LOC120099930

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC120099930 0.09 0.04 9.3e-07 0.06 0.06 0.05 0.06 1.3e-06 2.6e-06 1.9e-05 3.2e-06
2 Adipose gene expression LOC120099930 0.22 0.1 0.0e+00 0.12 0.14 0.13 0.13 4.9e-13 7.9e-15 5.8e-14 1.7e-14
3 Adipose isoform ratio XR_010060839.1 0.37 0.14 1.7e-13 0.05 0.11 0.1 0.1 1.5e-06 2.2e-12 5.4e-11 1.7e-11
4 Adipose isoform ratio XR_005499451.2 0.36 0.14 6.8e-14 0.05 0.12 0.1 0.11 1.4e-06 1.1e-12 1.3e-11 8.0e-12

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.51.01.3-0.4-1.1-1.11.1
Area under the delay curve0.00.10.10.1-0.2-0.30.3
BMI with tail1.75.912.5-3.5-2.8-1.31.3
BMI without tail1.47.314.3-3.8-3.2-1.61.6
Body weight1.25.212.6-3.6-2.8-0.20.2
Weight adjusted by age0.00.10.2-0.3-0.1-0.40.4
Bone surface0.81.63.2-0.9-1.8-1.11.1
Bone volume1.01.93.4-1.1-1.8-1.31.3
Breakpoint value in progressive ratio session0.00.10.20.40.4-0.20.2
Number of licking bursts0.61.74.02.01.5-0.40.5
Context. condit. distance diff. score0.20.30.60.50.80.3-0.3
Locomotion velocity, session 10.30.30.5-0.0-0.5-0.70.7
Locomotion distance, session 10.10.10.1-0.3-0.3-0.40.4
Locomotion velocity, session 20.20.20.30.1-0.5-0.50.5
Locomotion distance, session 20.40.61.0-1.0-0.8-0.50.5
Locomotion velocity, session 30.91.12.4-1.5-1.30.4-0.4
Locomotion distance, session 30.10.20.4-0.2-0.70.3-0.3
Stereotopy head waving bouts, day 30.60.71.4-0.3-0.4-1.21.1
Stereotopy head waving duration, day 30.60.81.0-0.7-0.8-1.01.0
Locomotion velocity, session 71.31.42.6-0.10.61.6-1.6
Locomotion distance, session 70.20.30.60.60.70.4-0.4
Stereotopy head waving bouts, day 70.00.10.1-0.2-0.30.2-0.2
Stereotopy head waving duration, day 70.30.40.8-0.8-0.9-0.00.0
Locomotion velocity, session 80.10.10.2-0.4-0.5-0.00.0
Locomotion distance, session 80.00.00.0-0.2-0.1-0.10.2
Degree of sensitization distance0.30.41.20.41.1-0.30.3
Degree of sensitization stereotypy0.20.20.4-0.3-0.20.6-0.6
Conditioned locomotion0.40.40.80.00.40.9-0.9
Cocaine response after cond. corrected0.50.71.81.41.0-0.10.1
Cocaine response after cond. not corrected0.10.20.20.50.50.4-0.4
Cocaine response before conditioning1.21.42.9-1.7-1.20.8-0.8
Saline control response0.60.81.40.6-0.3-1.21.2
Bone: connectivity density0.40.71.00.0-0.8-1.01.0
Bone: cortical apparent density0.20.30.70.80.4-0.50.5
Bone: cortical area2.33.77.6-2.2-2.7-1.11.1
Bone: cortical porosity2.32.53.7-1.9-1.21.6-1.5
Bone: cortical porosity2.02.23.0-1.5-0.71.7-1.7
Bone: cortical thickness1.62.75.0-1.6-2.2-1.31.3
Bone: cortical thickness0.40.51.2-0.8-1.1-0.40.4
Bone: cortical tissue density0.20.40.70.80.5-0.50.5
Condit. Reinf. active minus inactive responses0.10.20.20.40.4-0.30.3
Condit. Reinf. active-inactive response ratio0.10.10.40.30.60.1-0.2
Condit. Reinf. active responses0.81.02.00.4-0.2-1.41.4
Condit. Reinf. inactive responses1.51.93.50.2-0.8-1.91.9
Incentive salience index mean0.10.10.1-0.3-0.4-0.40.4
Condit. Reinf. lever presses0.71.01.7-1.0-1.3-0.80.8
Condit. Reinf. active minus inactive responses2.94.58.0-0.3-1.4-2.82.8
Condit. Reinf. active-inactive response ratio3.45.310.00.1-1.2-3.23.2
Condit. Reinf. active responses2.12.95.0-0.3-1.3-2.22.2
Condit. Reinf. inactive responses0.20.30.4-0.5-0.30.6-0.6
Condit. Reinf. lever presses1.82.73.3-1.0-1.7-1.81.8
Condit. Reinf. lever reinforcers received1.82.64.60.0-1.0-2.22.1
Conditioned reinforcement - actives0.20.91.21.01.10.8-0.8
Conditioned reinforcement - inactives0.20.71.01.00.7-0.80.8
Conditioned locomotion1.31.92.51.21.61.3-1.3
Patch foraging indifference point 0 sec0.51.52.0-0.9-1.0-1.41.4
Patch foraging indifference point AUC0.40.91.8-1.3-1.0-0.60.6
Delay disc. indifference point, 0s delay0.10.10.3-0.6-0.3-0.10.1
Delay disc. indifference point, 16s delay0.40.50.91.00.70.6-0.6
Delay disc. indifference point, 2s delay3.94.35.1-2.0-2.3-2.02.0
Delay disc. indifference point, 24s delay0.40.71.21.11.00.5-0.5
Delay disc. indifference point, 4s delay0.10.10.20.1-0.2-0.40.4
Delay disc. indifference point, 8s delay0.00.10.1-0.0-0.3-0.30.3
Indifference point function ln k0.30.81.5-1.2-1.1-0.50.5
Indifference point function log k0.30.81.5-1.2-1.1-0.50.5
Patch foraging total patch changes 0 sec0.61.92.8-0.9-1.0-1.71.7
Patch foraging total patch changes 12 sec0.40.50.90.40.1-1.00.9
Patch foraging total patch changes 18 sec0.20.40.70.40.2-0.80.8
Patch foraging total patch changes 24 sec0.31.12.2-0.0-0.3-1.51.5
Patch foraging total patch changes 6 sec1.22.03.6-0.3-0.8-1.91.9
Patch foraging time to switch 0 sec1.24.68.83.02.31.4-1.5
Patch foraging water rate 0 sec0.20.91.4-1.2-1.0-0.80.8
Patch foraging water rate 12 sec0.31.23.0-1.7-1.2-0.40.4
Patch foraging water rate 18 sec0.41.02.4-1.6-0.90.6-0.6
Patch foraging water rate 24 sec0.60.81.7-1.3-1.0-0.50.5
Patch foraging water rate 6 sec0.71.01.8-0.5-0.6-1.31.3
Seeking ratio, delayed vs. immediate footshock1.01.42.40.60.51.6-1.6
Distance traveled before self-admin0.00.10.30.60.20.0-0.0
Distance traveled after self-admin0.50.81.71.30.1-0.90.9
Extensor digitorum longus weight1.97.718.4-4.3-3.50.2-0.2
Bone: elastic displacement0.30.40.50.30.70.7-0.7
Bone: elastic work0.60.81.0-0.4-1.0-1.01.0
Bone: endosteal estimation0.41.02.3-1.2-1.5-0.40.4
Bone: endosteal perimeter0.10.30.6-0.5-0.80.4-0.4
Epididymis fat weight0.21.22.7-1.6-1.3-0.40.4
Delta time in closed arm before/after self-admin1.00.91.20.70.81.1-1.1
Delta time in open arm before/after self-admin4.25.05.9-1.7-2.3-2.42.4
Diff in mean of infusions in LGA sessions0.40.71.2-0.0-0.6-1.11.1
Delay discount exponential model param0.00.00.1-0.30.00.2-0.2
Extinction: sum of active levers before priming0.20.30.70.80.7-0.40.4
Active lever presses in extinction session 60.90.91.5-1.2-1.2-0.50.5
Bone: final force4.57.413.1-2.7-3.6-2.22.2
Bone: final moment4.26.811.6-2.4-3.4-2.22.2
Food consumed during 24 hour testing period1.22.42.7-1.6-1.7-1.41.4
Glucose0.10.10.4-0.7-0.1-0.10.1
Heart weight0.10.20.6-0.8-0.10.4-0.4
Delay discount hyperbolic model param0.10.20.30.00.40.5-0.5
Intermittent access intake day 1-15 change0.10.71.51.21.1-0.40.4
Intermittent access intake escalation0.10.61.21.10.9-0.40.4
Intermittent access intake escalation 20.40.71.51.21.10.1-0.1
Intermitt. access day 1 inactive lever presses0.11.11.90.80.3-1.41.4
Intermitt. access day 15 inactive lever presses0.10.60.9-0.9-0.7-0.60.6
Intermitt. access escalation Index0.10.20.3-0.4-0.5-0.40.4
Intermittent access day 1 total infusions0.20.50.90.0-0.2-1.00.9
Intermittent access day 15 total infusions0.40.91.11.00.7-1.01.0
Intermittent access terminal intake (last 3 days)0.50.81.30.80.3-1.11.1
Intermittent access total infusions0.50.50.9-0.1-0.6-1.01.0
Intermittent access day 1 locomotion0.20.40.70.3-0.3-0.80.8
Intermittent access day 15 total locomotion0.20.91.60.7-0.0-1.31.3
Intermittent access total locomotion0.80.91.5-0.4-0.9-1.21.2
Intermittent access standard deviation0.00.20.4-0.00.0-0.60.6
Left kidney weight1.18.722.4-4.7-2.81.5-1.5
Right kidney weight1.17.721.0-4.6-2.90.8-0.8
Cocaine induced anxiety0.00.10.30.40.60.0-0.0
Post-drug Anxiety0.10.10.2-0.50.00.3-0.3
Baseline Anxiety0.40.71.5-1.2-0.90.5-0.5
Tail length0.21.13.0-1.7-1.10.0-0.0
Length with tail0.42.03.0-1.2-0.61.7-1.7
Length without tail0.73.77.2-0.30.52.7-2.7
Times rat made contact with spout0.50.50.8-0.2-0.7-0.90.9
Lifetime Intake0.30.40.6-0.3-0.4-0.80.8
Liver weight, left0.50.81.30.31.11.0-1.0
Liver weight, right0.91.62.40.41.31.5-1.5
Locomotor activity0.10.10.2-0.20.10.5-0.5
Locomotor testing distance0.00.00.10.20.30.0-0.0
Locomotor testing rearing0.41.32.61.61.60.4-0.4
Locomotion in novel chamber0.40.61.0-0.8-1.0-0.60.6
Locomotion in novel chamber post-restriction0.51.42.01.40.5-1.31.3
Fecal boli incidents, locomotor time 11.33.44.21.62.01.9-1.9
Change in fecal boli incidents, locomotor task2.32.44.3-2.1-2.0-0.80.8
Time >=10cm from walls, locomotor time 10.30.40.60.70.2-0.70.7
Bouts of movement, locomotor time 10.60.81.00.81.00.8-0.8
Total resting periods, locomotor time 10.70.80.90.91.00.8-0.8
Rest time, locomotor task time 11.22.03.00.91.01.7-1.7
Distance moved, locomotor task time 11.23.45.4-0.9-1.4-2.32.3
Vertical activity count, locomotor time 10.53.86.4-0.9-1.2-2.52.5
Time >=10cm from walls, locomotor time 20.00.00.1-0.3-0.2-0.20.2
Bouts of movement, locomotor time 20.30.91.61.20.1-1.01.0
Total resting periods, locomotor time 20.10.40.80.90.0-0.70.7
Rest time, locomotor task time 20.91.63.0-0.60.31.7-1.7
Distance moved, locomotor task time 22.43.26.10.8-0.5-2.52.5
Vertical activity count, locomotor time 21.22.85.40.9-0.1-2.32.3
Light reinforcement 10.41.62.10.91.21.4-1.5
Light reinforcement 20.00.00.1-0.1-0.20.2-0.2
Bone: marrow area0.41.12.2-1.3-1.5-0.40.4
Bone: maximum diameter1.22.45.0-1.9-2.2-0.60.6
Bone: maximum force3.26.411.5-2.5-3.4-2.02.0
Bone: maximum moment3.05.810.0-2.3-3.2-2.02.0
Mean time between licks in bursts0.21.02.21.21.5-0.20.2
Mean num. licks in bursts0.51.42.8-1.7-1.6-0.20.1
Cd content in liver0.70.81.11.00.2-1.11.1
Co content in liver1.92.34.6-1.0-2.2-1.31.3
Cu content in liver2.93.45.8-1.7-2.4-1.51.5
Fe content in liver0.30.30.60.30.1-0.80.8
K content in liver2.62.56.0-1.8-2.5-0.60.6
Mg content in liver0.70.81.2-1.1-0.90.7-0.7
Mn content in liver0.10.20.2-0.3-0.40.4-0.4
Na content in liver2.52.87.1-2.7-1.90.5-0.5
Rb content in liver1.01.21.9-0.6-0.8-1.41.4
Se content in liver0.10.10.20.3-0.4-0.40.4
Sr content in liver0.10.10.2-0.1-0.40.1-0.1
Zn content in liver1.11.22.2-1.1-1.5-0.90.9
Bone: minimum diameter0.81.53.2-1.2-1.8-0.90.9
Time in familiar zone, hab. session 10.70.81.50.1-0.4-1.21.2
Time in novel zone, hab. session 12.22.44.5-0.00.92.1-2.1
Total zone transitions, hab. session 11.11.63.5-1.9-1.5-0.50.5
Total locomotion distance, hab. session 11.92.77.4-2.7-1.7-0.50.5
Locomotion velocity, hab. session 11.72.46.5-2.5-1.5-0.70.7
Time in familiar zone, hab. session 22.12.43.9-0.4-1.3-2.02.0
Time in novel zone, hab. session 21.41.52.10.31.31.4-1.4
Total zone transitions, hab. session 20.40.51.2-1.1-0.80.1-0.2
Total locomotion distance, hab. session 20.60.82.3-1.5-1.0-0.30.3
Locomotion velocity, hab. session 21.01.33.3-1.8-1.3-0.40.4
Novel to familiar place preference ratio0.81.01.81.31.0-0.70.7
Novelty place preference0.81.11.81.40.9-0.90.9
Time in novel zone, NPP test1.11.32.01.41.0-1.11.0
Total zone transitions, NPP test0.81.22.9-1.7-1.30.3-0.3
Total locomotion distance, NPP test0.60.82.7-1.6-0.60.3-0.3
Locomotion velocity, NPP test0.81.23.2-1.8-0.80.7-0.7
Intraocular pressure0.40.71.91.40.70.4-0.4
Delta distance traveled before/after self-admin0.50.50.80.7-0.0-0.90.9
Delta ambulatory time before/after self-admin0.50.91.60.7-0.2-1.31.2
Parametrial fat weight3.68.515.8-4.0-3.5-1.71.8
Pavlov. Cond. lever latency0.40.41.21.10.7-0.20.2
Pavlov. Cond. magazine entry latency0.81.01.6-1.30.11.1-1.1
Pavlov. Cond. change in total contacts0.50.51.0-0.4-0.01.0-1.0
Pavlov. Cond. index score0.30.40.9-0.9-0.20.6-0.6
Pavlov. Cond. latency score0.40.61.4-1.2-0.50.5-0.5
Pavlov. Cond. lever contacts0.50.61.4-1.2-0.70.4-0.4
Pavlov. Cond. magazine entry number0.50.71.00.5-0.6-1.01.0
Pavlov. Cond. intertrial magazine entries0.91.11.80.8-0.1-1.41.3
Pavlov. Cond. lever-magazine prob. diff.0.30.41.1-1.0-0.30.5-0.5
Pavlov. Cond. response bias0.50.61.1-0.50.41.0-1.0
Pavlov. Cond. lever latency0.81.11.81.01.30.9-0.9
Pavlov. Cond. magazine entry latency1.62.23.61.71.91.1-1.1
Pavlov. Cond. change in total contacts0.30.71.40.2-0.4-1.21.2
Pavlov. Cond. index score0.10.10.20.40.3-0.20.2
Pavlov. Cond. latency score0.00.00.10.30.2-0.00.0
Pavlov. Cond. lever contacts0.71.01.7-1.1-1.3-0.70.7
Pavlov. Cond. magazine entry number1.01.33.1-1.8-1.3-0.30.3
Pavlov. Cond. intertrial magazine entries1.02.25.3-2.3-1.8-0.30.3
Pavlov. Cond. lever-magazine prob. diff.0.10.20.50.70.6-0.10.1
Pavlov. Cond. response bias0.20.30.50.2-0.2-0.70.7
Time in closed arm before self-admin0.40.71.90.81.40.4-0.4
Time in closed arm after self-admin3.64.15.01.82.22.0-2.0
Time in open arm before self-admin0.40.51.1-0.0-0.21.0-1.0
Time in open arm after self-admin5.56.18.0-2.0-2.8-2.52.5
Bone: periosteal estimation1.84.28.8-2.2-3.0-1.21.2
Bone: periosteal perimeter0.50.91.7-1.3-1.30.3-0.3
Bone: post-yield work2.13.58.4-2.9-2.4-0.30.3
Progressive ratio test 1 active lever presses0.20.40.8-0.0-0.1-0.90.9
Progressive ratio test 1 breakpoint0.20.40.90.0-0.0-0.90.9
Progressive ratio test 1 inactive lever presses0.10.20.5-0.2-0.1-0.70.7
Progressive ratio test 2 active lever presses0.71.02.41.51.20.1-0.2
Progressive ratio test 2 breakpoint0.60.82.01.41.10.2-0.2
Progressive ratio test 2 inactive lever presses0.10.40.70.30.60.8-0.8
Incentive Sensitization - Responses0.41.02.11.41.20.6-0.6
Incentive Sensitization - Breakpoint0.30.71.51.21.00.5-0.5
Sum of active levers in priming session hrs 5-60.60.60.9-0.9-0.70.6-0.7
Progressive ratio0.41.12.0-0.20.51.4-1.4
Food seeking constrained by brief footshock0.00.00.1-0.20.30.2-0.2
Seeking ratio, punishment vs. effort0.20.50.8-0.4-0.7-0.90.9
Retroperitoneal fat weight0.62.68.2-2.9-0.90.9-0.8
Reaction time number correct0.41.42.61.61.40.7-0.7
Reaction time mean minus median0.00.00.1-0.3-0.2-0.10.1
Reaction time mean minus median AUC0.00.00.10.30.1-0.00.0
Reaction time num false alarms0.10.20.40.60.1-0.50.5
Reaction time num false alarms AUC0.00.00.00.1-0.10.0-0.0
Reaction time trials correct on left0.41.42.61.61.40.7-0.7
Reaction time trials on left0.41.42.61.61.40.8-0.8
Reaction time mean0.10.20.2-0.40.10.5-0.5
Reaction time mean AUC0.10.30.6-0.10.30.7-0.7
Median of all reaction times0.10.20.4-0.40.20.6-0.6
Reaction time omissions0.91.42.60.10.51.6-1.6
Reaction time false alarm rate0.20.20.3-0.3-0.6-0.50.5
Reaction time premature initiation rate1.32.13.9-0.10.62.0-2.0
Reaction time premature initiations1.33.86.40.81.42.5-2.5
Std. dev. reaction times0.00.10.2-0.20.20.5-0.5
Reaction time trials completed0.41.42.61.61.40.8-0.8
Reaction time trials AUC0.31.22.11.51.30.6-0.6
Run reversals in cocaine runway, females1.21.42.6-1.6-1.01.0-1.0
Run reversals in cocaine runway, males0.00.00.10.0-0.30.2-0.2
Latency to leave start box in cocaine runway1.21.72.4-1.3-1.6-1.11.1
Latency to leave start box in cocaine runway, F0.10.10.1-0.1-0.1-0.40.4
Latency to leave start box in cocaine runway, M2.32.24.0-1.7-2.0-0.90.9
Std. dev. time between licks in bursts0.10.20.3-0.00.2-0.60.6
Total sessions with >9 infusions0.40.50.6-0.6-0.6-0.80.8
Short access day 1 total inactive lever presses0.61.22.4-0.20.41.5-1.5
Short access day 10 total inactive lever presses0.00.30.60.80.6-0.20.2
Short access day 1 total infusions0.61.11.81.01.30.9-0.9
Short access day 10 total infusions0.20.30.60.30.2-0.70.7
Short access total infusions0.10.10.2-0.3-0.1-0.40.4
Short access day 1 locomotion0.30.51.51.20.7-0.10.0
Short access day 10 total locomotion0.52.03.6-0.2-0.8-1.91.9
Short access total locomotion0.91.42.1-0.7-0.9-1.41.4
One hour access (0.3 mA shock)0.20.30.40.30.5-0.60.6
Compulsive drug intake0.30.40.9-1.0-0.8-0.20.2
One hour access (shock baseline)0.20.40.60.50.4-0.80.8
Social response proportion0.50.61.70.71.30.5-0.5
Social responses0.70.91.50.71.20.9-0.9
Social time0.60.91.71.31.30.4-0.4
Soleus weight1.85.410.4-3.2-2.9-1.21.2
Bone: stiffness4.07.314.0-2.9-3.7-1.81.8
Tibialis anterior weight4.013.929.8-5.5-4.8-1.21.2
Time to tail flick, vehicle, before self-admin0.50.61.5-1.2-0.70.4-0.4
Time to tail flick, vehicle, after self-admin0.20.40.7-0.00.40.8-0.8
Time to tail flick, test, before self-admin0.60.72.4-1.6-0.70.2-0.2
Time to tail flick, test, after self-admin0.10.10.50.20.7-0.20.2
Delta time to tail flick, vehicle, before/after SA0.10.10.20.0-0.2-0.40.4
Delta time to tail flick, test, before/after SA0.10.10.20.40.4-0.30.3
Tibia length0.00.10.2-0.0-0.4-0.30.3
Ambulatory time before self-admin0.10.31.01.00.3-0.10.1
Ambulatory time after self-admin0.71.03.11.80.4-0.70.7
Bone: tissue strength0.20.20.4-0.7-0.60.1-0.1
Total heroin consumption0.00.00.0-0.10.0-0.10.0
Bone: trabecular number0.40.70.9-0.6-0.9-0.90.9
Bone: trabecular spacing1.21.72.60.61.21.6-1.6
Bone: trabecular thickness1.11.61.9-1.0-1.2-1.41.4
Bone: trabecular tissue density0.30.51.0-1.0-0.70.6-0.6
Water consumed over 24 hours0.51.01.41.20.91.0-1.0
Number of responses in last shaping day0.30.30.60.30.80.6-0.6