LOC120097692

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC120097692 0.07 0.04 5.3e-08 0.09 0.07 0.07 0.08 2.6e-08 2.6e-07 3.4e-07 1.0e-07
2 IC gene expression LOC120097692 0.16 0.08 1.6e-05 0.12 0.11 0.1 0.12 7.3e-06 2.2e-05 5.3e-05 1.2e-05
3 BLA gene expression LOC120097692 0.13 0.07 8.6e-07 0.09 0.1 0.11 0.11 1.2e-05 5.9e-06 1.5e-06 2.6e-06
4 Liver gene expression LOC120097692 0.03 0.02 7.7e-05 0.02 0.03 0.02 0.02 3.4e-03 1.1e-04 1.0e-03 1.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.40.7-0.7-0.70.2-0.8
Area under the delay curve1.51.72.1-1.5-1.4-1.01.3
BMI with tail5.719.726.9-5.2-5.1-4.32.7
BMI without tail4.413.417.2-4.1-4.1-3.82.3
Body weight4.017.626.6-5.2-5.1-3.72.0
Weight adjusted by age6.19.312.0-3.5-3.3-3.02.2
Bone surface0.10.20.3-0.6-0.5-0.2-0.6
Bone volume0.81.52.5-1.6-1.6-1.00.3
Breakpoint value in progressive ratio session0.80.91.3-1.0-1.1-1.10.4
Number of licking bursts0.40.61.70.10.10.8-1.3
Context. condit. distance diff. score1.11.42.01.41.31.0-0.9
Locomotion velocity, session 10.30.30.60.80.60.3-0.2
Locomotion distance, session 10.10.20.30.60.4-0.30.2
Locomotion velocity, session 20.40.40.90.90.9-0.10.1
Locomotion distance, session 20.10.10.40.0-0.1-0.60.4
Locomotion velocity, session 30.20.30.60.80.60.2-0.0
Locomotion distance, session 30.40.40.90.90.90.20.1
Stereotopy head waving bouts, day 30.00.00.00.10.10.10.1
Stereotopy head waving duration, day 30.00.00.0-0.1-0.10.2-0.2
Locomotion velocity, session 70.70.81.1-1.0-1.1-1.00.5
Locomotion distance, session 70.10.10.2-0.3-0.4-0.40.3
Stereotopy head waving bouts, day 70.10.20.2-0.3-0.3-0.50.4
Stereotopy head waving duration, day 70.91.11.4-1.2-1.2-1.00.9
Locomotion velocity, session 83.94.75.42.32.22.1-2.0
Locomotion distance, session 82.63.85.32.32.11.6-1.6
Degree of sensitization distance0.30.40.7-0.8-0.9-0.1-0.1
Degree of sensitization stereotypy0.20.20.3-0.5-0.6-0.50.3
Conditioned locomotion0.20.20.4-0.3-0.4-0.50.6
Cocaine response after cond. corrected0.50.61.11.01.0-0.10.5
Cocaine response after cond. not corrected0.60.71.51.21.20.20.1
Cocaine response before conditioning0.30.40.90.30.20.8-0.9
Saline control response0.20.30.6-0.1-0.3-0.70.8
Bone: connectivity density0.40.51.40.30.40.8-1.2
Bone: cortical apparent density0.40.61.01.01.0-0.10.5
Bone: cortical area5.38.212.0-3.4-3.5-2.81.2
Bone: cortical porosity0.70.81.30.90.71.2-0.7
Bone: cortical porosity0.70.81.60.70.51.3-0.9
Bone: cortical thickness2.23.65.0-2.2-2.2-2.00.8
Bone: cortical thickness1.61.92.2-1.4-1.4-1.51.1
Bone: cortical tissue density0.60.81.51.21.20.10.4
Condit. Reinf. active minus inactive responses3.74.24.72.12.12.2-1.8
Condit. Reinf. active-inactive response ratio2.02.12.71.41.41.7-1.3
Condit. Reinf. active responses2.22.83.21.51.51.8-1.8
Condit. Reinf. inactive responses0.50.61.30.40.50.8-1.1
Incentive salience index mean4.04.95.72.42.32.3-1.8
Condit. Reinf. lever presses1.92.73.21.81.81.7-1.2
Condit. Reinf. active minus inactive responses0.40.51.1-1.1-0.9-0.2-0.3
Condit. Reinf. active-inactive response ratio0.40.40.9-0.9-0.9-0.3-0.0
Condit. Reinf. active responses0.81.22.4-1.6-1.4-0.5-0.1
Condit. Reinf. inactive responses0.20.30.6-0.8-0.7-0.1-0.1
Condit. Reinf. lever presses0.50.71.2-1.0-1.1-0.70.2
Condit. Reinf. lever reinforcers received0.60.81.6-1.3-1.2-0.4-0.3
Conditioned reinforcement - actives0.20.30.8-0.3-0.3-0.50.9
Conditioned reinforcement - inactives0.30.40.7-0.7-0.8-0.50.5
Conditioned locomotion0.10.20.50.00.1-0.40.7
Patch foraging indifference point 0 sec2.85.38.2-2.9-2.4-2.41.3
Patch foraging indifference point AUC1.21.82.6-1.5-1.6-1.30.8
Delay disc. indifference point, 0s delay1.51.62.0-1.2-1.3-1.41.1
Delay disc. indifference point, 16s delay0.30.40.5-0.7-0.7-0.40.6
Delay disc. indifference point, 2s delay0.40.41.2-0.2-0.2-0.61.1
Delay disc. indifference point, 24s delay0.20.30.5-0.7-0.60.30.3
Delay disc. indifference point, 4s delay0.30.30.6-0.5-0.4-0.40.7
Delay disc. indifference point, 8s delay6.07.08.9-3.0-2.9-2.52.1
Indifference point function ln k0.50.81.10.91.10.9-0.7
Indifference point function log k0.50.81.10.91.10.9-0.7
Patch foraging total patch changes 0 sec3.26.19.2-3.0-2.6-2.51.3
Patch foraging total patch changes 12 sec2.63.44.9-2.2-2.1-1.80.9
Patch foraging total patch changes 18 sec4.67.110.1-3.2-3.2-2.51.4
Patch foraging total patch changes 24 sec3.96.89.7-3.1-3.0-2.61.4
Patch foraging total patch changes 6 sec5.58.312.1-3.5-3.3-2.81.5
Patch foraging time to switch 0 sec0.20.40.80.90.80.6-0.1
Patch foraging water rate 0 sec0.30.61.2-1.1-0.9-0.80.3
Patch foraging water rate 12 sec0.51.01.9-1.3-1.4-0.5-0.1
Patch foraging water rate 18 sec0.40.71.2-0.8-0.6-1.10.7
Patch foraging water rate 24 sec1.21.72.5-1.2-1.1-1.61.2
Patch foraging water rate 6 sec1.31.92.6-1.4-1.3-1.61.1
Seeking ratio, delayed vs. immediate footshock2.32.84.22.12.01.4-1.0
Distance traveled before self-admin0.50.61.10.70.6-0.81.1
Distance traveled after self-admin0.40.50.90.70.7-0.61.0
Extensor digitorum longus weight0.41.52.4-1.5-1.6-0.80.8
Bone: elastic displacement0.50.60.9-0.6-0.8-0.71.0
Bone: elastic work1.11.52.3-0.9-1.0-1.41.5
Bone: endosteal estimation0.71.62.5-1.6-1.6-1.10.5
Bone: endosteal perimeter4.810.212.8-3.6-3.5-3.32.2
Epididymis fat weight4.515.527.9-5.0-5.3-2.91.2
Delta time in closed arm before/after self-admin0.50.50.80.90.90.6-0.2
Delta time in open arm before/after self-admin1.01.02.4-1.6-1.2-0.4-0.2
Diff in mean of infusions in LGA sessions0.40.50.80.80.90.4-0.7
Delay discount exponential model param1.51.62.01.41.41.0-1.3
Extinction: sum of active levers before priming0.00.00.00.10.00.0-0.1
Active lever presses in extinction session 60.00.00.0-0.0-0.2-0.10.1
Bone: final force1.72.84.0-1.9-2.0-1.70.8
Bone: final moment1.62.63.9-1.8-2.0-1.60.7
Food consumed during 24 hour testing period1.62.22.71.61.71.4-1.3
Glucose1.62.63.3-1.8-1.8-1.61.2
Heart weight0.91.32.3-1.5-1.5-0.80.1
Delay discount hyperbolic model param1.31.51.81.31.30.9-1.3
Intermittent access intake day 1-15 change1.73.64.1-1.8-1.8-2.02.0
Intermittent access intake escalation1.32.72.8-1.6-1.6-1.61.7
Intermittent access intake escalation 21.61.92.1-1.3-1.4-1.41.4
Intermitt. access day 1 inactive lever presses0.51.93.7-1.9-1.9-0.50.3
Intermitt. access day 15 inactive lever presses0.71.42.3-1.5-1.5-0.70.7
Intermitt. access escalation Index0.50.71.00.80.91.0-0.5
Intermittent access day 1 total infusions0.20.40.6-0.5-0.6-0.50.8
Intermittent access day 15 total infusions1.42.12.9-1.3-1.4-1.31.7
Intermittent access terminal intake (last 3 days)1.11.52.1-1.2-1.2-1.01.4
Intermittent access total infusions1.92.22.5-1.5-1.6-1.21.6
Intermittent access day 1 locomotion1.82.33.9-1.2-1.3-1.52.0
Intermittent access day 15 total locomotion3.66.68.2-2.9-2.8-2.42.1
Intermittent access total locomotion3.44.15.6-1.8-1.8-2.02.4
Intermittent access standard deviation2.55.36.3-2.4-2.5-2.31.9
Left kidney weight1.15.17.2-2.4-2.3-2.71.5
Right kidney weight2.712.117.6-3.5-3.4-4.22.7
Cocaine induced anxiety2.53.64.92.12.12.2-0.9
Post-drug Anxiety1.01.11.90.80.81.4-1.1
Baseline Anxiety1.01.11.8-1.3-1.3-0.9-0.3
Tail length0.10.20.3-0.6-0.6-0.40.2
Length with tail0.20.81.6-1.3-1.2-0.5-0.1
Length without tail0.72.24.4-2.1-1.9-0.8-0.2
Times rat made contact with spout0.00.00.10.10.1-0.20.1
Lifetime Intake1.72.12.4-1.5-1.5-1.31.4
Liver weight, left3.76.18.5-2.9-2.8-2.41.4
Liver weight, right2.44.15.5-2.1-1.9-2.31.8
Locomotor activity0.91.51.8-1.4-1.0-1.31.1
Locomotor testing distance1.52.74.1-1.5-1.2-2.01.7
Locomotor testing rearing1.73.54.7-1.7-1.5-2.22.0
Locomotion in novel chamber1.11.52.61.51.60.9-0.3
Locomotion in novel chamber post-restriction1.32.13.51.71.91.3-0.3
Fecal boli incidents, locomotor time 11.32.02.7-1.6-1.4-1.60.8
Change in fecal boli incidents, locomotor task6.36.27.22.72.62.7-2.0
Time >=10cm from walls, locomotor time 13.94.25.42.02.02.3-1.8
Bouts of movement, locomotor time 12.83.24.2-2.0-2.0-1.71.3
Total resting periods, locomotor time 12.32.63.1-1.8-1.8-1.61.3
Rest time, locomotor task time 11.41.82.1-1.4-1.3-1.41.2
Distance moved, locomotor task time 10.10.20.40.60.40.5-0.2
Vertical activity count, locomotor time 11.02.33.61.91.61.6-0.7
Time >=10cm from walls, locomotor time 20.50.81.40.80.70.9-1.2
Bouts of movement, locomotor time 20.10.10.20.30.2-0.20.4
Total resting periods, locomotor time 20.20.30.7-0.3-0.3-0.70.8
Rest time, locomotor task time 21.62.02.4-1.5-1.2-1.51.4
Distance moved, locomotor task time 20.00.00.1-0.0-0.30.0-0.3
Vertical activity count, locomotor time 20.20.30.70.50.10.8-0.5
Light reinforcement 10.81.92.61.51.61.5-0.8
Light reinforcement 21.82.84.11.92.01.5-1.1
Bone: marrow area0.71.52.5-1.6-1.6-1.00.5
Bone: maximum diameter4.58.512.6-3.6-3.6-2.61.4
Bone: maximum force0.61.21.7-1.3-1.3-1.10.2
Bone: maximum moment0.61.01.6-1.2-1.3-0.90.1
Mean time between licks in bursts0.71.62.51.00.91.6-1.5
Mean num. licks in bursts0.60.92.3-0.1-0.2-1.11.5
Cd content in liver0.50.61.21.01.10.2-0.1
Co content in liver0.00.00.10.30.0-0.20.1
Cu content in liver0.00.00.10.0-0.1-0.20.4
Fe content in liver0.50.61.3-0.0-0.21.0-1.1
K content in liver0.30.30.6-0.3-0.4-0.60.7
Mg content in liver1.31.32.3-0.8-1.0-1.21.5
Mn content in liver0.10.10.20.1-0.1-0.20.5
Na content in liver0.30.30.7-0.4-0.2-0.40.9
Rb content in liver0.20.20.60.50.20.8-0.2
Se content in liver0.40.40.50.70.50.7-0.6
Sr content in liver0.70.61.31.01.20.50.2
Zn content in liver0.30.41.20.1-0.1-0.41.1
Bone: minimum diameter2.23.96.0-2.5-2.4-1.80.7
Time in familiar zone, hab. session 10.20.20.5-0.00.1-0.40.7
Time in novel zone, hab. session 10.30.30.5-0.6-0.70.2-0.6
Total zone transitions, hab. session 11.21.72.7-1.1-1.1-1.61.3
Total locomotion distance, hab. session 10.91.21.61.10.91.2-1.3
Locomotion velocity, hab. session 11.11.61.71.31.21.2-1.3
Time in familiar zone, hab. session 20.30.30.5-0.7-0.60.3-0.6
Time in novel zone, hab. session 20.20.20.30.50.4-0.40.6
Total zone transitions, hab. session 21.52.02.7-1.2-1.3-1.61.4
Total locomotion distance, hab. session 20.10.10.10.40.40.2-0.2
Locomotion velocity, hab. session 20.00.00.10.30.20.0-0.0
Novel to familiar place preference ratio0.91.01.80.70.51.2-1.3
Novelty place preference0.60.71.20.50.41.0-1.1
Time in novel zone, NPP test0.50.51.30.20.10.9-1.1
Total zone transitions, NPP test0.40.51.0-0.6-0.5-1.00.7
Total locomotion distance, NPP test0.71.01.11.01.10.8-1.1
Locomotion velocity, NPP test1.01.52.01.41.40.9-1.1
Intraocular pressure1.42.13.4-1.8-1.8-1.20.4
Delta distance traveled before/after self-admin0.20.20.5-0.4-0.3-0.10.7
Delta ambulatory time before/after self-admin0.10.10.2-0.5-0.30.00.4
Parametrial fat weight9.522.433.7-5.8-5.8-4.22.2
Pavlov. Cond. lever latency0.30.30.5-0.7-0.7-0.50.2
Pavlov. Cond. magazine entry latency0.70.81.30.90.91.1-0.6
Pavlov. Cond. change in total contacts0.30.30.40.60.60.6-0.2
Pavlov. Cond. index score0.10.10.20.40.50.4-0.1
Pavlov. Cond. latency score0.00.10.10.30.30.2-0.0
Pavlov. Cond. lever contacts0.10.10.20.30.40.2-0.0
Pavlov. Cond. magazine entry number0.00.00.1-0.1-0.1-0.2-0.2
Pavlov. Cond. intertrial magazine entries0.70.80.80.90.90.8-0.9
Pavlov. Cond. lever-magazine prob. diff.0.30.30.50.60.60.7-0.3
Pavlov. Cond. response bias0.40.50.70.80.80.8-0.3
Pavlov. Cond. lever latency0.20.20.40.70.70.10.3
Pavlov. Cond. magazine entry latency0.30.30.7-0.7-0.8-0.40.2
Pavlov. Cond. change in total contacts0.50.71.4-1.1-1.2-0.60.1
Pavlov. Cond. index score0.40.61.1-1.0-1.1-0.50.1
Pavlov. Cond. latency score0.50.71.3-1.1-1.1-0.60.1
Pavlov. Cond. lever contacts0.20.20.4-0.7-0.7-0.3-0.1
Pavlov. Cond. magazine entry number0.30.40.70.80.90.5-0.2
Pavlov. Cond. intertrial magazine entries0.10.20.3-0.6-0.4-0.30.4
Pavlov. Cond. lever-magazine prob. diff.0.50.71.2-1.0-1.1-0.60.2
Pavlov. Cond. response bias0.20.30.5-0.7-0.7-0.2-0.3
Time in closed arm before self-admin0.10.20.5-0.3-0.2-0.10.7
Time in closed arm after self-admin0.30.30.30.60.50.40.6
Time in open arm before self-admin3.53.85.22.32.11.6-1.7
Time in open arm after self-admin0.10.20.6-0.20.10.1-0.8
Bone: periosteal estimation2.75.78.6-2.9-2.9-2.21.0
Bone: periosteal perimeter10.317.722.9-4.8-4.7-4.22.7
Bone: post-yield work2.13.14.41.41.42.0-2.1
Progressive ratio test 1 active lever presses1.82.22.9-1.4-1.4-1.41.7
Progressive ratio test 1 breakpoint1.72.12.8-1.3-1.4-1.41.7
Progressive ratio test 1 inactive lever presses0.20.20.4-0.5-0.6-0.20.5
Progressive ratio test 2 active lever presses3.33.94.7-2.1-2.2-1.61.9
Progressive ratio test 2 breakpoint3.33.84.7-2.1-2.2-1.61.9
Progressive ratio test 2 inactive lever presses1.01.72.9-1.6-1.7-0.90.6
Incentive Sensitization - Responses1.52.12.9-1.7-1.7-1.11.3
Incentive Sensitization - Breakpoint1.41.82.6-1.6-1.6-0.91.2
Sum of active levers in priming session hrs 5-60.00.00.10.20.20.1-0.1
Progressive ratio0.30.50.60.80.80.6-0.8
Food seeking constrained by brief footshock0.60.81.90.70.61.4-0.6
Seeking ratio, punishment vs. effort0.40.51.0-0.7-0.8-0.31.0
Retroperitoneal fat weight5.624.040.7-6.2-6.4-3.71.6
Reaction time number correct1.42.73.6-1.7-1.9-1.51.4
Reaction time mean minus median0.71.71.9-1.3-1.3-1.21.4
Reaction time mean minus median AUC1.43.65.3-1.6-1.6-1.92.3
Reaction time num false alarms0.30.40.60.60.80.6-0.4
Reaction time num false alarms AUC0.10.10.30.40.60.2-0.0
Reaction time trials correct on left1.42.73.6-1.7-1.9-1.51.4
Reaction time trials on left1.62.93.9-1.8-2.0-1.51.5
Reaction time mean0.91.42.5-0.9-1.1-1.01.6
Reaction time mean AUC0.81.32.7-0.8-1.0-1.01.7
Median of all reaction times0.71.02.3-0.6-0.8-0.91.5
Reaction time omissions0.91.22.1-1.3-1.4-0.61.0
Reaction time false alarm rate1.52.02.81.51.71.3-1.1
Reaction time premature initiation rate0.20.30.9-0.2-0.1-0.90.6
Reaction time premature initiations1.42.53.8-1.3-1.4-1.91.6
Std. dev. reaction times1.93.64.1-1.9-2.0-1.81.8
Reaction time trials completed1.62.93.9-1.8-2.0-1.51.5
Reaction time trials AUC1.52.93.9-1.8-2.0-1.61.5
Run reversals in cocaine runway, females0.60.60.9-0.9-1.0-0.40.6
Run reversals in cocaine runway, males0.10.10.40.60.40.00.2
Latency to leave start box in cocaine runway0.10.10.2-0.2-0.2-0.40.5
Latency to leave start box in cocaine runway, F0.10.20.40.50.60.2-0.2
Latency to leave start box in cocaine runway, M1.51.41.9-1.2-1.4-1.01.1
Std. dev. time between licks in bursts1.72.33.41.31.31.6-1.8
Total sessions with >9 infusions1.92.32.6-1.6-1.6-1.61.2
Short access day 1 total inactive lever presses1.21.62.41.11.01.4-1.5
Short access day 10 total inactive lever presses0.30.60.8-0.8-0.9-0.80.6
Short access day 1 total infusions0.20.30.4-0.4-0.4-0.70.6
Short access day 10 total infusions0.30.40.9-0.2-0.2-0.81.0
Short access total infusions0.40.50.7-0.6-0.6-0.80.8
Short access day 1 locomotion1.82.23.4-1.3-1.3-1.81.5
Short access day 10 total locomotion2.13.94.3-1.9-1.9-2.12.1
Short access total locomotion3.64.45.6-1.9-1.8-2.42.2
One hour access (0.3 mA shock)0.80.91.7-1.3-1.3-0.30.6
Compulsive drug intake0.91.01.70.80.81.3-1.1
One hour access (shock baseline)1.72.72.9-1.7-1.7-1.51.6
Social response proportion1.01.11.9-0.7-0.8-1.41.2
Social responses4.55.87.3-2.7-2.7-2.51.5
Social time2.43.34.3-1.6-1.6-2.02.1
Soleus weight4.613.415.6-3.4-3.3-3.93.9
Bone: stiffness0.61.01.4-1.2-1.1-1.10.1
Tibialis anterior weight0.41.42.0-1.3-1.4-0.91.1
Time to tail flick, vehicle, before self-admin0.20.20.6-0.8-0.5-0.0-0.2
Time to tail flick, vehicle, after self-admin0.00.00.10.2-0.2-0.2-0.1
Time to tail flick, test, before self-admin1.21.22.5-0.3-0.3-1.51.6
Time to tail flick, test, after self-admin0.50.51.1-1.0-1.0-0.20.1
Delta time to tail flick, vehicle, before/after SA0.30.30.5-0.3-0.7-0.70.2
Delta time to tail flick, test, before/after SA0.40.40.6-0.8-0.80.2-0.4
Tibia length0.92.53.5-1.5-1.7-1.91.1
Ambulatory time before self-admin0.40.51.10.1-0.0-1.01.1
Ambulatory time after self-admin0.50.61.40.00.1-0.91.2
Bone: tissue strength0.00.00.10.10.20.2-0.3
Total heroin consumption1.31.62.0-1.4-1.4-1.40.6
Bone: trabecular number0.30.51.3-0.3-0.20.6-1.2
Bone: trabecular spacing0.00.00.00.10.20.1-0.0
Bone: trabecular thickness3.34.26.4-2.5-2.5-1.81.0
Bone: trabecular tissue density0.81.12.0-0.6-0.8-1.21.4
Water consumed over 24 hours0.10.20.4-0.2-0.2-0.60.5
Number of responses in last shaping day1.21.32.3-0.8-0.7-1.51.3