LOC120097050

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC120097050 0.04 0.03 3.6e-04 0.03 0.03 0.03 0.04 2.6e-04 1.2e-04 1.3e-04 9.8e-05
2 NAcc intron excision ratio chr1_94917622_94918044 0.03 0.03 4.4e-03 0.02 0.01 0.01 0.01 1.6e-03 5.2e-03 2.4e-02 7.8e-03
3 Brain gene expression LOC120097050 0.05 0.04 4.9e-03 0.03 0.01 0.02 0.02 6.4e-04 1.7e-02 3.9e-03 4.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.81.7-1.3-0.80.2
Area under the delay curve0.91.01.5-0.7-1.1-1.2
BMI with tail0.00.20.20.1-0.5-0.5
BMI without tail0.41.21.4-0.9-1.2-1.1
Body weight2.19.015.8-4.0-2.6-2.1
Weight adjusted by age0.20.30.4-0.6-0.6-0.3
Bone surface1.73.03.8-1.9-1.9-1.3
Bone volume1.62.84.1-2.0-1.8-1.0
Breakpoint value in progressive ratio session1.01.21.3-1.1-1.1-1.1
Number of licking bursts0.50.72.11.50.2-0.2
Context. condit. distance diff. score0.50.61.2-0.0-0.8-1.1
Locomotion velocity, session 10.40.40.80.50.40.9
Locomotion distance, session 12.43.06.0-1.3-2.4-1.2
Locomotion velocity, session 20.60.71.21.10.10.9
Locomotion distance, session 21.21.74.11.0-2.0-0.4
Locomotion velocity, session 30.30.40.80.6-0.90.2
Locomotion distance, session 36.77.212.0-1.8-3.5-2.6
Stereotopy head waving bouts, day 33.54.16.01.02.52.3
Stereotopy head waving duration, day 34.75.67.81.52.82.6
Locomotion velocity, session 71.82.03.6-0.7-1.9-1.4
Locomotion distance, session 70.70.91.9-0.5-1.4-0.7
Stereotopy head waving bouts, day 70.50.61.61.30.50.1
Stereotopy head waving duration, day 71.31.62.51.61.20.8
Locomotion velocity, session 81.11.44.02.0-0.30.1
Locomotion distance, session 81.42.03.80.6-2.0-1.4
Degree of sensitization distance1.81.93.70.71.91.2
Degree of sensitization stereotypy0.40.40.90.9-0.1-0.6
Conditioned locomotion0.20.30.60.80.30.1
Cocaine response after cond. corrected1.31.62.60.61.61.4
Cocaine response after cond. not corrected2.12.44.40.62.11.6
Cocaine response before conditioning0.50.51.2-1.1-0.1-0.6
Saline control response0.30.40.50.50.70.7
Bone: connectivity density0.40.61.0-0.8-1.0-0.0
Bone: cortical apparent density0.40.51.31.2-0.20.5
Bone: cortical area0.71.01.6-1.3-1.0-0.7
Bone: cortical porosity0.40.40.90.9-0.2-0.6
Bone: cortical porosity0.60.61.41.2-0.2-0.6
Bone: cortical thickness0.10.20.5-0.7-0.40.1
Bone: cortical thickness0.40.50.60.80.60.8
Bone: cortical tissue density0.40.61.51.2-0.20.4
Condit. Reinf. active minus inactive responses0.10.10.20.5-0.20.2
Condit. Reinf. active-inactive response ratio0.91.01.80.50.91.3
Condit. Reinf. active responses0.60.82.31.5-0.10.2
Condit. Reinf. inactive responses0.91.12.21.5-0.7-0.7
Incentive salience index mean0.10.20.30.5-0.5-0.1
Condit. Reinf. lever presses0.20.30.50.1-0.7-0.5
Condit. Reinf. active minus inactive responses0.50.61.3-0.7-1.1-0.2
Condit. Reinf. active-inactive response ratio0.20.20.40.7-0.10.4
Condit. Reinf. active responses1.82.53.2-1.8-1.8-1.1
Condit. Reinf. inactive responses3.24.25.1-2.3-1.8-2.0
Condit. Reinf. lever presses3.54.99.2-3.0-1.8-1.5
Condit. Reinf. lever reinforcers received2.63.64.7-2.0-2.2-1.5
Conditioned reinforcement - actives0.40.70.80.90.70.9
Conditioned reinforcement - inactives1.32.03.8-0.2-1.9-1.5
Conditioned locomotion1.21.62.91.71.00.9
Patch foraging indifference point 0 sec0.00.00.1-0.1-0.0-0.3
Patch foraging indifference point AUC0.60.91.21.10.90.9
Delay disc. indifference point, 0s delay3.53.95.8-1.0-2.2-2.4
Delay disc. indifference point, 16s delay0.91.01.7-0.6-1.0-1.3
Delay disc. indifference point, 2s delay2.83.14.6-1.4-2.1-1.7
Delay disc. indifference point, 24s delay1.71.92.2-1.2-1.5-1.4
Delay disc. indifference point, 4s delay0.40.50.80.1-0.9-0.8
Delay disc. indifference point, 8s delay0.10.20.3-0.4-0.2-0.5
Indifference point function ln k0.40.81.9-0.6-1.4-0.3
Indifference point function log k0.40.81.9-0.6-1.4-0.3
Patch foraging total patch changes 0 sec0.00.10.1-0.2-0.2-0.4
Patch foraging total patch changes 12 sec0.40.51.00.41.00.7
Patch foraging total patch changes 18 sec0.10.10.20.10.5-0.2
Patch foraging total patch changes 24 sec0.81.42.8-1.1-0.5-1.7
Patch foraging total patch changes 6 sec0.20.30.40.40.70.6
Patch foraging time to switch 0 sec1.42.95.91.12.41.2
Patch foraging water rate 0 sec0.30.61.01.0-0.90.2
Patch foraging water rate 12 sec1.12.33.4-1.3-1.8-1.4
Patch foraging water rate 18 sec0.00.10.10.3-0.4-0.1
Patch foraging water rate 24 sec3.04.29.0-0.4-3.0-1.9
Patch foraging water rate 6 sec3.45.08.8-1.5-3.0-2.0
Seeking ratio, delayed vs. immediate footshock3.64.46.1-1.5-2.2-2.5
Distance traveled before self-admin0.10.10.2-0.2-0.2-0.4
Distance traveled after self-admin0.81.02.1-1.4-0.5-0.7
Extensor digitorum longus weight0.31.01.60.70.91.3
Bone: elastic displacement0.50.51.20.21.10.6
Bone: elastic work0.70.92.5-1.6-0.2-0.6
Bone: endosteal estimation0.81.72.7-1.6-0.9-1.2
Bone: endosteal perimeter0.92.02.4-1.4-1.3-1.6
Epididymis fat weight0.10.30.5-0.5-0.70.0
Delta time in closed arm before/after self-admin1.00.91.3-1.1-0.9-0.8
Delta time in open arm before/after self-admin0.90.91.30.61.01.1
Diff in mean of infusions in LGA sessions0.30.40.91.00.5-0.1
Delay discount exponential model param0.80.91.20.71.01.1
Extinction: sum of active levers before priming1.31.54.4-2.1-0.10.1
Active lever presses in extinction session 61.21.21.5-0.71.21.2
Bone: final force1.01.62.7-1.6-1.2-0.9
Bone: final moment1.32.03.4-1.8-1.3-1.0
Food consumed during 24 hour testing period1.62.22.8-1.2-1.6-1.7
Glucose0.71.12.00.50.91.4
Heart weight0.50.81.7-0.2-1.3-0.7
Delay discount hyperbolic model param0.80.91.10.61.01.1
Intermittent access intake day 1-15 change1.22.43.7-1.9-1.0-1.6
Intermittent access intake escalation0.91.83.1-1.8-0.9-1.2
Intermittent access intake escalation 20.50.51.3-1.10.0-0.5
Intermitt. access day 1 inactive lever presses1.03.73.7-1.9-1.9-1.9
Intermitt. access day 15 inactive lever presses1.32.74.0-0.8-1.8-2.0
Intermitt. access escalation Index0.40.51.10.1-0.7-1.1
Intermittent access day 1 total infusions0.40.61.21.1-0.4-0.7
Intermittent access day 15 total infusions0.81.22.0-0.4-1.2-1.4
Intermittent access terminal intake (last 3 days)0.70.91.80.1-0.9-1.4
Intermittent access total infusions0.50.61.30.3-0.6-1.1
Intermittent access day 1 locomotion0.81.01.40.8-1.1-1.2
Intermittent access day 15 total locomotion0.71.22.1-0.4-1.2-1.5
Intermittent access total locomotion0.30.40.60.8-0.3-0.6
Intermittent access standard deviation1.94.05.1-2.3-1.4-2.2
Left kidney weight1.36.112.2-3.5-1.9-1.5
Right kidney weight1.46.514.4-3.8-2.0-1.1
Cocaine induced anxiety0.00.00.10.10.00.3
Post-drug Anxiety0.10.10.30.50.30.1
Baseline Anxiety0.20.30.70.1-0.3-0.8
Tail length2.911.320.5-4.5-2.8-2.4
Length with tail3.916.931.5-5.6-3.3-2.8
Length without tail2.16.611.3-3.4-2.4-1.6
Times rat made contact with spout0.50.61.00.30.81.0
Lifetime Intake0.20.20.40.4-0.4-0.6
Liver weight, left0.40.71.01.00.70.7
Liver weight, right0.61.02.21.0-0.01.5
Locomotor activity2.03.25.30.91.92.3
Locomotor testing distance1.22.12.90.91.71.6
Locomotor testing rearing0.71.32.01.41.01.0
Locomotion in novel chamber0.91.21.31.01.11.1
Locomotion in novel chamber post-restriction0.20.30.60.60.80.3
Fecal boli incidents, locomotor time 13.04.35.22.32.01.9
Change in fecal boli incidents, locomotor task1.21.21.90.41.21.4
Time >=10cm from walls, locomotor time 10.10.10.10.20.30.3
Bouts of movement, locomotor time 12.73.04.3-1.0-2.1-1.9
Total resting periods, locomotor time 11.82.02.7-0.8-1.6-1.6
Rest time, locomotor task time 11.82.23.51.91.41.1
Distance moved, locomotor task time 10.30.50.8-0.6-0.9-0.7
Vertical activity count, locomotor time 11.12.63.2-1.8-1.5-1.5
Time >=10cm from walls, locomotor time 20.81.12.41.60.60.8
Bouts of movement, locomotor time 20.10.10.3-0.2-0.6-0.1
Total resting periods, locomotor time 20.00.00.00.1-0.20.2
Rest time, locomotor task time 20.70.91.11.01.00.8
Distance moved, locomotor task time 20.50.61.2-0.2-1.1-0.7
Vertical activity count, locomotor time 21.42.02.8-1.1-1.7-1.4
Light reinforcement 10.00.10.20.3-0.4-0.1
Light reinforcement 21.21.83.31.80.21.4
Bone: marrow area0.71.62.7-1.7-0.8-1.2
Bone: maximum diameter0.71.21.8-1.3-0.8-1.1
Bone: maximum force1.93.45.3-2.3-1.7-1.4
Bone: maximum moment2.23.95.9-2.4-1.9-1.5
Mean time between licks in bursts0.41.02.30.0-1.5-0.9
Mean num. licks in bursts0.40.61.3-1.10.10.7
Cd content in liver0.20.20.50.20.70.0
Co content in liver1.21.42.11.01.41.1
Cu content in liver1.11.31.9-1.4-1.2-0.8
Fe content in liver0.50.60.80.70.90.8
K content in liver0.00.00.00.10.20.2
Mg content in liver1.61.62.61.01.11.6
Mn content in liver3.53.96.31.32.51.9
Na content in liver0.40.40.6-0.8-0.2-0.7
Rb content in liver0.10.10.10.30.4-0.3
Se content in liver6.07.18.52.92.12.9
Sr content in liver1.21.11.80.71.40.9
Zn content in liver2.62.93.31.61.71.8
Bone: minimum diameter3.05.46.3-2.2-2.3-2.5
Time in familiar zone, hab. session 10.20.20.4-0.3-0.40.7
Time in novel zone, hab. session 10.40.40.80.90.6-0.3
Total zone transitions, hab. session 10.71.01.9-0.0-1.4-1.0
Total locomotion distance, hab. session 10.60.91.3-1.1-0.8-0.9
Locomotion velocity, hab. session 10.20.30.7-0.9-0.3-0.3
Time in familiar zone, hab. session 20.70.81.2-0.91.10.6
Time in novel zone, hab. session 20.30.30.60.8-0.5-0.0
Total zone transitions, hab. session 20.81.03.01.7-0.20.3
Total locomotion distance, hab. session 20.10.20.40.1-0.4-0.6
Locomotion velocity, hab. session 20.10.10.20.3-0.1-0.4
Novel to familiar place preference ratio0.20.20.4-0.4-0.3-0.6
Novelty place preference0.20.20.5-0.3-0.2-0.7
Time in novel zone, NPP test0.20.20.4-0.1-0.3-0.7
Total zone transitions, NPP test0.30.41.30.0-1.1-0.0
Total locomotion distance, NPP test1.31.83.6-1.9-1.1-0.7
Locomotion velocity, NPP test1.11.63.8-2.0-0.9-0.5
Intraocular pressure0.20.30.40.50.6-0.5
Delta distance traveled before/after self-admin0.91.02.2-1.5-0.6-0.6
Delta ambulatory time before/after self-admin1.21.52.8-1.7-0.9-0.9
Parametrial fat weight1.63.75.70.82.22.4
Pavlov. Cond. lever latency0.10.20.3-0.40.5-0.1
Pavlov. Cond. magazine entry latency0.40.50.80.7-0.10.9
Pavlov. Cond. change in total contacts0.70.81.60.6-1.3-0.6
Pavlov. Cond. index score0.30.40.60.8-0.40.6
Pavlov. Cond. latency score0.20.30.40.6-0.60.3
Pavlov. Cond. lever contacts0.10.10.30.2-0.6-0.1
Pavlov. Cond. magazine entry number0.20.20.3-0.50.5-0.5
Pavlov. Cond. intertrial magazine entries0.60.71.71.30.20.6
Pavlov. Cond. lever-magazine prob. diff.0.40.50.80.9-0.30.7
Pavlov. Cond. response bias0.40.51.00.60.01.0
Pavlov. Cond. lever latency4.05.57.82.82.31.9
Pavlov. Cond. magazine entry latency1.92.34.4-2.1-1.1-1.2
Pavlov. Cond. change in total contacts5.68.912.7-3.6-2.4-2.9
Pavlov. Cond. index score4.15.69.1-3.0-2.0-1.9
Pavlov. Cond. latency score3.64.87.7-2.8-1.8-1.8
Pavlov. Cond. lever contacts4.46.18.7-2.9-2.3-2.1
Pavlov. Cond. magazine entry number3.34.17.02.61.81.5
Pavlov. Cond. intertrial magazine entries0.91.42.11.51.30.4
Pavlov. Cond. lever-magazine prob. diff.3.74.98.5-2.9-1.8-1.7
Pavlov. Cond. response bias5.87.910.6-3.3-2.8-2.4
Time in closed arm before self-admin0.40.51.11.10.4-0.3
Time in closed arm after self-admin0.70.71.4-0.1-0.8-1.2
Time in open arm before self-admin1.11.33.2-1.8-0.7-0.4
Time in open arm after self-admin0.40.40.8-0.90.30.5
Bone: periosteal estimation1.12.23.6-1.9-1.2-1.2
Bone: periosteal perimeter0.30.61.1-1.0-0.4-0.7
Bone: post-yield work3.14.55.2-1.9-2.3-2.1
Progressive ratio test 1 active lever presses0.70.81.5-0.4-0.9-1.2
Progressive ratio test 1 breakpoint0.81.01.7-0.4-1.1-1.3
Progressive ratio test 1 inactive lever presses2.43.56.0-0.5-2.4-2.1
Progressive ratio test 2 active lever presses0.10.20.3-0.0-0.4-0.5
Progressive ratio test 2 breakpoint0.10.20.20.1-0.5-0.5
Progressive ratio test 2 inactive lever presses2.03.24.8-0.6-2.2-2.1
Incentive Sensitization - Responses0.10.10.20.3-0.4-0.2
Incentive Sensitization - Breakpoint0.10.10.20.3-0.5-0.3
Sum of active levers in priming session hrs 5-60.10.10.10.20.40.1
Progressive ratio0.00.10.20.4-0.10.1
Food seeking constrained by brief footshock0.91.01.7-1.3-0.9-0.8
Seeking ratio, punishment vs. effort0.50.81.0-0.8-1.0-0.8
Retroperitoneal fat weight2.410.115.91.73.44.0
Reaction time number correct0.00.10.2-0.2-0.50.2
Reaction time mean minus median0.10.20.2-0.50.2-0.5
Reaction time mean minus median AUC0.20.41.0-1.0-0.1-0.5
Reaction time num false alarms0.40.61.20.71.10.2
Reaction time num false alarms AUC0.71.12.11.01.40.5
Reaction time trials correct on left0.00.10.2-0.2-0.50.2
Reaction time trials on left0.10.10.2-0.2-0.40.2
Reaction time mean0.30.40.6-0.6-0.6-0.8
Reaction time mean AUC0.10.20.3-0.4-0.3-0.5
Median of all reaction times0.20.20.3-0.3-0.6-0.5
Reaction time omissions0.20.30.50.10.70.6
Reaction time false alarm rate0.50.71.60.71.30.1
Reaction time premature initiation rate0.20.30.9-0.1-0.0-0.9
Reaction time premature initiations0.10.20.5-0.1-0.3-0.7
Std. dev. reaction times0.51.01.6-1.0-0.5-1.3
Reaction time trials completed0.10.10.2-0.2-0.40.2
Reaction time trials AUC0.10.10.3-0.0-0.10.6
Run reversals in cocaine runway, females1.61.62.0-1.2-1.4-1.2
Run reversals in cocaine runway, males3.43.45.90.62.02.4
Latency to leave start box in cocaine runway1.21.41.6-1.1-1.2-1.3
Latency to leave start box in cocaine runway, F1.31.53.2-0.5-1.8-0.9
Latency to leave start box in cocaine runway, M0.40.40.5-0.60.6-0.7
Std. dev. time between licks in bursts0.81.11.80.2-1.2-1.3
Total sessions with >9 infusions0.50.71.00.90.31.0
Short access day 1 total inactive lever presses4.96.510.6-1.1-3.3-2.7
Short access day 10 total inactive lever presses2.66.39.1-1.7-3.0-2.6
Short access day 1 total infusions0.40.51.30.0-1.1-0.4
Short access day 10 total infusions0.10.10.20.30.5-0.1
Short access total infusions0.20.20.50.70.20.4
Short access day 1 locomotion0.30.30.70.80.20.5
Short access day 10 total locomotion0.30.51.0-0.4-0.6-1.0
Short access total locomotion0.50.61.31.20.40.5
One hour access (0.3 mA shock)2.93.34.7-1.1-2.0-2.2
Compulsive drug intake0.91.12.1-0.1-1.5-1.1
One hour access (shock baseline)0.30.50.9-0.3-0.6-0.9
Social response proportion0.60.70.9-0.9-0.6-0.8
Social responses0.00.00.10.00.0-0.4
Social time2.94.04.5-1.8-2.1-2.1
Soleus weight0.10.30.40.40.60.6
Bone: stiffness1.42.33.2-1.6-1.8-1.1
Tibialis anterior weight0.31.21.90.41.41.2
Time to tail flick, vehicle, before self-admin0.20.20.30.3-0.6-0.3
Time to tail flick, vehicle, after self-admin0.20.30.90.10.9-0.1
Time to tail flick, test, before self-admin2.52.64.0-0.8-2.0-1.8
Time to tail flick, test, after self-admin0.10.10.20.4-0.10.4
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.50.6-0.1
Delta time to tail flick, test, before/after SA3.83.95.41.52.12.3
Tibia length2.67.19.8-3.1-2.9-1.7
Ambulatory time before self-admin0.10.10.2-0.1-0.1-0.5
Ambulatory time after self-admin2.22.54.4-2.1-1.2-1.3
Bone: tissue strength3.73.74.1-1.9-1.8-2.0
Total heroin consumption0.80.91.3-0.9-1.1-0.8
Bone: trabecular number1.52.43.4-1.8-1.8-0.8
Bone: trabecular spacing0.70.92.5-0.21.60.5
Bone: trabecular thickness0.20.30.8-0.3-0.9-0.2
Bone: trabecular tissue density3.95.77.81.82.82.5
Water consumed over 24 hours0.40.61.0-1.0-0.7-0.2
Number of responses in last shaping day0.60.71.3-0.5-1.2-0.7