LOC120097050

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc alternative polyA XR_005494140.1 0.03 0.02 1.2e-04 0.01 0.03 0.01 0.01 6.0e-03 4.7e-04 6.7e-03 8.4e-03
2 NAcc alternative polyA XR_005494145.1 0.03 0.02 1.6e-04 0.01 0.03 0.02 0.01 6.7e-03 5.2e-04 3.6e-03 8.0e-03
3 OFC alternative polyA XR_005494140.1 0.33 0.25 5.8e-04 0.14 0.09 0.11 0.13 2.7e-04 3.4e-03 1.7e-03 5.9e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.61.01.2-1.11.10.8
Area under the delay curve0.20.20.3-0.40.40.6
BMI with tail0.10.50.60.8-0.8-0.4
BMI without tail0.00.00.1-0.20.20.1
Body weight3.012.613.1-3.63.63.4
Weight adjusted by age0.30.30.6-0.40.40.8
Bone surface1.52.63.1-1.81.81.3
Bone volume1.62.63.1-1.71.81.3
Breakpoint value in progressive ratio session1.21.41.6-1.11.11.3
Number of licking bursts3.23.84.22.1-2.0-1.7
Context. condit. distance diff. score0.10.10.30.1-0.10.5
Locomotion velocity, session 10.50.60.70.7-0.7-0.8
Locomotion distance, session 10.50.60.6-0.80.80.7
Locomotion velocity, session 21.51.83.51.0-1.0-1.9
Locomotion distance, session 21.62.23.01.4-1.4-1.7
Locomotion velocity, session 30.50.51.00.6-0.5-1.0
Locomotion distance, session 32.22.42.8-1.71.71.2
Stereotopy head waving bouts, day 30.70.91.20.9-0.9-1.1
Stereotopy head waving duration, day 31.51.81.81.3-1.3-1.3
Locomotion velocity, session 70.30.40.4-0.60.60.6
Locomotion distance, session 70.10.20.2-0.50.50.2
Stereotopy head waving bouts, day 71.21.41.41.2-1.2-1.1
Stereotopy head waving duration, day 72.42.93.21.8-1.8-1.5
Locomotion velocity, session 83.94.75.02.2-2.2-2.0
Locomotion distance, session 80.60.91.01.0-1.0-0.9
Degree of sensitization distance0.30.30.40.6-0.6-0.5
Degree of sensitization stereotypy1.41.61.71.3-1.3-1.1
Conditioned locomotion0.60.70.90.9-1.0-0.6
Cocaine response after cond. corrected0.00.00.10.3-0.3-0.0
Cocaine response after cond. not corrected0.00.00.10.1-0.1-0.3
Cocaine response before conditioning0.91.11.6-1.31.30.3
Saline control response0.00.00.0-0.00.0-0.2
Bone: connectivity density0.20.30.4-0.60.60.1
Bone: cortical apparent density1.41.92.41.6-1.5-0.9
Bone: cortical area1.31.92.1-1.51.51.2
Bone: cortical porosity2.62.84.21.5-1.5-2.0
Bone: cortical porosity3.23.54.91.7-1.7-2.2
Bone: cortical thickness0.20.40.5-0.70.70.5
Bone: cortical thickness0.70.80.80.9-0.9-0.9
Bone: cortical tissue density1.72.32.81.7-1.7-1.0
Condit. Reinf. active minus inactive responses0.20.20.30.5-0.5-0.3
Condit. Reinf. active-inactive response ratio0.20.20.20.5-0.5-0.3
Condit. Reinf. active responses2.12.52.91.7-1.7-1.3
Condit. Reinf. inactive responses2.22.72.91.7-1.7-1.5
Incentive salience index mean0.20.30.30.5-0.5-0.6
Condit. Reinf. lever presses0.00.10.20.1-0.1-0.4
Condit. Reinf. active minus inactive responses1.01.21.7-1.31.30.5
Condit. Reinf. active-inactive response ratio0.00.00.10.2-0.2-0.3
Condit. Reinf. active responses2.63.64.7-2.22.21.2
Condit. Reinf. inactive responses3.34.05.1-2.22.21.4
Condit. Reinf. lever presses6.48.710.2-3.23.22.4
Condit. Reinf. lever reinforcers received2.83.95.0-2.22.21.3
Conditioned reinforcement - actives0.70.71.50.5-0.5-1.2
Conditioned reinforcement - inactives0.20.20.3-0.50.50.2
Conditioned locomotion2.83.43.71.8-1.8-1.9
Patch foraging indifference point 0 sec0.00.00.1-0.20.2-0.1
Patch foraging indifference point AUC0.50.50.60.7-0.7-0.8
Delay disc. indifference point, 0s delay0.30.30.8-0.10.10.9
Delay disc. indifference point, 16s delay0.30.30.4-0.60.60.5
Delay disc. indifference point, 2s delay1.31.52.3-1.01.01.5
Delay disc. indifference point, 24s delay2.32.22.3-1.51.51.5
Delay disc. indifference point, 4s delay0.20.20.40.4-0.4-0.6
Delay disc. indifference point, 8s delay0.20.20.3-0.40.40.5
Indifference point function ln k0.40.50.6-0.80.80.6
Indifference point function log k0.40.50.6-0.80.80.6
Patch foraging total patch changes 0 sec0.10.10.2-0.40.40.1
Patch foraging total patch changes 12 sec0.20.20.50.2-0.2-0.7
Patch foraging total patch changes 18 sec0.00.00.00.1-0.1-0.1
Patch foraging total patch changes 24 sec0.91.11.4-1.01.01.2
Patch foraging total patch changes 6 sec0.00.10.2-0.10.1-0.4
Patch foraging time to switch 0 sec0.81.21.61.0-1.0-1.2
Patch foraging water rate 0 sec0.60.90.91.0-1.0-1.0
Patch foraging water rate 12 sec0.50.80.9-0.90.90.8
Patch foraging water rate 18 sec0.20.30.50.5-0.4-0.7
Patch foraging water rate 24 sec0.00.00.00.0-0.00.1
Patch foraging water rate 6 sec1.11.61.6-1.31.31.2
Seeking ratio, delayed vs. immediate footshock1.01.21.3-1.11.11.2
Distance traveled before self-admin0.00.00.00.1-0.1-0.1
Distance traveled after self-admin3.33.74.3-2.12.11.6
Extensor digitorum longus weight0.00.20.20.4-0.40.5
Bone: elastic displacement0.00.00.10.0-0.0-0.2
Bone: elastic work1.62.12.4-1.61.61.2
Bone: endosteal estimation1.53.23.6-1.91.91.5
Bone: endosteal perimeter1.32.63.0-1.71.71.3
Epididymis fat weight0.20.40.5-0.50.50.7
Delta time in closed arm before/after self-admin3.53.43.6-1.81.81.9
Delta time in open arm before/after self-admin1.00.91.50.8-0.8-1.2
Diff in mean of infusions in LGA sessions0.40.50.60.8-0.8-0.4
Delay discount exponential model param0.30.30.40.5-0.5-0.6
Extinction: sum of active levers before priming4.64.65.4-2.02.02.3
Active lever presses in extinction session 62.42.43.0-1.71.71.1
Bone: final force1.82.93.0-1.71.71.7
Bone: final moment2.33.83.8-1.91.91.9
Food consumed during 24 hour testing period0.60.70.7-0.90.90.7
Glucose0.10.10.20.4-0.4-0.2
Heart weight0.30.40.6-0.50.50.8
Delay discount hyperbolic model param0.20.20.30.4-0.4-0.6
Intermittent access intake day 1-15 change2.82.83.0-1.71.71.5
Intermittent access intake escalation2.82.83.0-1.71.71.6
Intermittent access intake escalation 21.61.61.9-1.41.41.0
Intermitt. access day 1 inactive lever presses3.13.33.7-1.91.91.6
Intermitt. access day 15 inactive lever presses0.20.20.3-0.60.50.2
Intermitt. access escalation Index0.10.10.10.3-0.30.0
Intermittent access day 1 total infusions2.83.33.31.8-1.8-1.8
Intermittent access day 15 total infusions0.10.10.20.2-0.2-0.5
Intermittent access terminal intake (last 3 days)0.50.60.90.7-0.6-1.0
Intermittent access total infusions1.01.11.50.9-0.9-1.2
Intermittent access day 1 locomotion1.41.51.51.2-1.2-1.2
Intermittent access day 15 total locomotion0.00.00.10.1-0.1-0.3
Intermittent access total locomotion1.61.82.01.3-1.3-1.4
Intermittent access standard deviation4.64.85.5-2.32.31.9
Left kidney weight3.39.39.6-3.13.12.9
Right kidney weight5.415.316.3-4.04.03.6
Cocaine induced anxiety0.50.60.6-0.80.70.8
Post-drug Anxiety0.10.10.20.3-0.3-0.4
Baseline Anxiety1.71.82.11.3-1.3-1.5
Tail length4.513.615.6-3.93.93.1
Length with tail8.330.533.0-5.75.75.0
Length without tail6.213.614.0-3.73.73.6
Times rat made contact with spout0.20.20.40.6-0.60.0
Lifetime Intake1.01.21.51.0-1.0-1.2
Liver weight, left0.20.30.50.7-0.7-0.2
Liver weight, right0.20.40.70.4-0.5-0.8
Locomotor activity0.50.81.20.8-0.8-1.1
Locomotor testing distance0.40.70.90.7-0.7-1.0
Locomotor testing rearing1.82.72.81.7-1.6-1.7
Locomotion in novel chamber0.30.40.60.6-0.6-0.8
Locomotion in novel chamber post-restriction0.00.00.00.1-0.1-0.1
Fecal boli incidents, locomotor time 12.83.14.01.6-1.6-2.0
Change in fecal boli incidents, locomotor task0.10.10.1-0.30.30.2
Time >=10cm from walls, locomotor time 10.00.00.00.2-0.2-0.0
Bouts of movement, locomotor time 10.50.50.8-0.60.60.9
Total resting periods, locomotor time 10.30.30.4-0.50.50.7
Rest time, locomotor task time 11.21.41.41.2-1.2-1.2
Distance moved, locomotor task time 10.40.41.1-0.30.31.0
Vertical activity count, locomotor time 12.32.42.5-1.61.61.5
Time >=10cm from walls, locomotor time 22.22.32.41.5-1.5-1.4
Bouts of movement, locomotor time 20.00.00.00.1-0.1-0.0
Total resting periods, locomotor time 20.10.10.20.3-0.3-0.5
Rest time, locomotor task time 20.80.91.60.8-0.8-1.2
Distance moved, locomotor task time 20.10.20.40.2-0.20.6
Vertical activity count, locomotor time 21.11.21.6-1.01.01.3
Light reinforcement 10.20.30.50.4-0.4-0.7
Light reinforcement 22.43.33.51.9-1.9-1.7
Bone: marrow area1.53.23.7-1.91.91.5
Bone: maximum diameter1.42.52.7-1.61.61.5
Bone: maximum force2.84.95.0-2.22.22.2
Bone: maximum moment3.45.85.8-2.42.42.4
Mean time between licks in bursts0.00.00.00.1-0.1-0.2
Mean num. licks in bursts1.72.02.2-1.41.41.5
Cd content in liver0.10.10.2-0.30.30.4
Co content in liver0.30.30.40.6-0.6-0.5
Cu content in liver0.70.91.2-0.80.81.1
Fe content in liver0.00.00.00.2-0.20.0
K content in liver0.10.10.20.0-0.0-0.4
Mg content in liver0.90.91.30.8-0.8-1.1
Mn content in liver1.61.82.71.1-1.1-1.6
Na content in liver1.11.11.4-1.21.20.8
Rb content in liver0.10.10.10.3-0.30.3
Se content in liver7.59.29.83.1-3.1-2.8
Sr content in liver1.21.11.60.9-0.9-1.3
Zn content in liver0.10.10.10.3-0.3-0.0
Bone: minimum diameter2.64.95.5-2.32.31.9
Time in familiar zone, hab. session 11.00.91.5-0.80.81.2
Time in novel zone, hab. session 12.22.12.61.4-1.4-1.6
Total zone transitions, hab. session 10.00.00.00.1-0.1-0.1
Total locomotion distance, hab. session 10.40.60.9-1.01.00.0
Locomotion velocity, hab. session 10.30.40.5-0.70.7-0.2
Time in familiar zone, hab. session 21.61.72.0-1.41.41.0
Time in novel zone, hab. session 21.21.21.31.1-1.1-1.0
Total zone transitions, hab. session 23.85.05.32.2-2.2-2.3
Total locomotion distance, hab. session 20.40.61.00.6-0.6-1.0
Locomotion velocity, hab. session 20.50.71.10.7-0.7-1.1
Novel to familiar place preference ratio0.10.10.2-0.30.30.5
Novelty place preference0.10.10.2-0.20.20.4
Time in novel zone, NPP test0.00.00.1-0.00.00.3
Total zone transitions, NPP test0.10.10.10.2-0.2-0.4
Total locomotion distance, NPP test1.72.33.0-1.71.71.0
Locomotion velocity, NPP test1.62.33.1-1.81.80.8
Intraocular pressure0.00.00.00.1-0.10.2
Delta distance traveled before/after self-admin5.15.55.8-2.42.42.2
Delta ambulatory time before/after self-admin5.66.26.7-2.62.62.3
Parametrial fat weight0.00.00.00.1-0.1-0.2
Pavlov. Cond. lever latency0.81.12.3-0.70.71.5
Pavlov. Cond. magazine entry latency1.51.93.90.9-0.9-2.0
Pavlov. Cond. change in total contacts1.11.22.40.8-0.8-1.6
Pavlov. Cond. index score1.82.34.51.1-1.1-2.1
Pavlov. Cond. latency score1.21.53.20.8-0.8-1.8
Pavlov. Cond. lever contacts0.40.41.30.1-0.2-1.1
Pavlov. Cond. magazine entry number1.72.14.2-1.11.12.0
Pavlov. Cond. intertrial magazine entries0.50.60.80.9-0.9-0.4
Pavlov. Cond. lever-magazine prob. diff.2.22.75.21.2-1.2-2.3
Pavlov. Cond. response bias1.11.33.20.6-0.6-1.8
Pavlov. Cond. lever latency4.56.16.92.6-2.6-2.2
Pavlov. Cond. magazine entry latency2.02.32.9-1.71.71.0
Pavlov. Cond. change in total contacts7.910.811.5-3.43.43.1
Pavlov. Cond. index score4.35.66.5-2.52.51.9
Pavlov. Cond. latency score4.04.95.8-2.42.41.8
Pavlov. Cond. lever contacts4.25.76.2-2.52.52.2
Pavlov. Cond. magazine entry number3.54.34.92.2-2.2-1.8
Pavlov. Cond. intertrial magazine entries0.70.91.11.0-1.0-0.7
Pavlov. Cond. lever-magazine prob. diff.4.35.46.4-2.52.51.9
Pavlov. Cond. response bias4.76.57.1-2.72.72.3
Time in closed arm before self-admin2.93.23.61.9-1.9-1.6
Time in closed arm after self-admin0.00.00.1-0.00.00.3
Time in open arm before self-admin4.34.75.4-2.32.31.8
Time in open arm after self-admin0.91.01.5-1.21.20.3
Bone: periosteal estimation1.94.04.5-2.12.11.8
Bone: periosteal perimeter1.01.72.1-1.51.51.0
Bone: post-yield work1.92.63.1-1.51.51.8
Progressive ratio test 1 active lever presses0.20.20.3-0.50.50.4
Progressive ratio test 1 breakpoint0.50.50.6-0.80.80.6
Progressive ratio test 1 inactive lever presses0.10.20.2-0.50.50.0
Progressive ratio test 2 active lever presses0.10.10.20.1-0.1-0.4
Progressive ratio test 2 breakpoint0.10.10.30.2-0.2-0.6
Progressive ratio test 2 inactive lever presses0.10.20.2-0.50.50.2
Incentive Sensitization - Responses0.10.10.20.3-0.3-0.5
Incentive Sensitization - Breakpoint0.10.10.20.2-0.2-0.4
Sum of active levers in priming session hrs 5-60.20.20.4-0.40.40.6
Progressive ratio0.20.20.50.1-0.1-0.7
Food seeking constrained by brief footshock2.22.83.6-1.91.91.0
Seeking ratio, punishment vs. effort0.60.70.9-0.80.80.9
Retroperitoneal fat weight0.92.93.71.9-1.9-1.2
Reaction time number correct0.00.00.1-0.10.10.3
Reaction time mean minus median0.60.80.9-0.90.90.9
Reaction time mean minus median AUC1.31.71.7-1.31.31.3
Reaction time num false alarms0.71.01.11.1-1.1-0.9
Reaction time num false alarms AUC1.01.41.51.2-1.2-1.1
Reaction time trials correct on left0.00.00.1-0.10.10.3
Reaction time trials on left0.00.00.1-0.10.10.3
Reaction time mean0.20.30.4-0.50.60.6
Reaction time mean AUC0.10.10.2-0.40.40.3
Median of all reaction times0.00.10.1-0.20.20.2
Reaction time omissions0.00.00.0-0.00.0-0.1
Reaction time false alarm rate0.71.01.11.0-1.0-1.0
Reaction time premature initiation rate0.20.20.7-0.0-0.0-0.8
Reaction time premature initiations0.10.10.4-0.00.0-0.6
Std. dev. reaction times0.91.31.6-1.11.11.3
Reaction time trials completed0.00.00.1-0.10.10.3
Reaction time trials AUC0.00.00.1-0.00.00.2
Run reversals in cocaine runway, females1.21.11.8-0.90.91.3
Run reversals in cocaine runway, males0.20.20.40.2-0.2-0.6
Latency to leave start box in cocaine runway0.30.30.6-0.40.40.8
Latency to leave start box in cocaine runway, F0.20.20.5-0.10.10.7
Latency to leave start box in cocaine runway, M0.00.00.1-0.20.20.1
Std. dev. time between licks in bursts0.20.30.8-0.20.1-0.9
Total sessions with >9 infusions1.31.51.61.2-1.2-1.3
Short access day 1 total inactive lever presses0.00.00.1-0.10.10.3
Short access day 10 total inactive lever presses1.51.71.9-1.21.21.4
Short access day 1 total infusions0.20.20.20.4-0.4-0.4
Short access day 10 total infusions0.50.60.80.7-0.7-0.9
Short access total infusions1.21.31.51.1-1.1-1.2
Short access day 1 locomotion0.20.30.30.5-0.5-0.5
Short access day 10 total locomotion0.20.20.4-0.60.60.1
Short access total locomotion1.31.41.71.1-1.1-1.3
One hour access (0.3 mA shock)0.40.40.7-0.80.8-0.0
Compulsive drug intake0.00.00.0-0.20.2-0.1
One hour access (shock baseline)0.10.10.40.1-0.1-0.6
Social response proportion2.42.63.4-1.51.51.8
Social responses0.40.50.7-0.80.80.4
Social time3.14.24.7-2.02.02.2
Soleus weight0.10.20.20.4-0.4-0.5
Bone: stiffness1.72.73.7-1.51.51.9
Tibialis anterior weight0.00.10.3-0.00.00.6
Time to tail flick, vehicle, before self-admin1.01.11.21.1-1.1-0.9
Time to tail flick, vehicle, after self-admin0.30.30.90.2-0.2-0.9
Time to tail flick, test, before self-admin0.20.10.20.5-0.40.2
Time to tail flick, test, after self-admin0.00.00.0-0.00.00.2
Delta time to tail flick, vehicle, before/after SA0.40.40.6-0.80.70.1
Delta time to tail flick, test, before/after SA0.30.30.70.3-0.3-0.8
Tibia length3.510.011.7-3.03.03.4
Ambulatory time before self-admin0.10.10.10.2-0.2-0.3
Ambulatory time after self-admin7.17.88.4-2.92.92.6
Bone: tissue strength3.93.84.4-1.91.82.1
Total heroin consumption0.20.30.4-0.50.50.6
Bone: trabecular number1.52.42.6-1.61.61.4
Bone: trabecular spacing0.10.10.1-0.30.3-0.3
Bone: trabecular thickness0.00.00.10.0-0.00.3
Bone: trabecular tissue density1.92.72.91.7-1.7-1.6
Water consumed over 24 hours0.60.70.8-0.80.80.9
Number of responses in last shaping day0.10.10.10.4-0.4-0.3