LOC120097019

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC120097019 0.04 0.02 3.3e-05 0.04 0.03 0.02 0.02 7.5e-05 4.1e-04 1.8e-03 1.1e-03
2 PL gene expression LOC120097019 0.03 0.02 1.3e-03 0.02 0.02 0.01 0.01 5.3e-03 5.5e-03 1.1e-02 1.8e-02
3 NAcc gene expression LOC120097019 0.07 0.03 5.0e-10 0.08 0.06 0.07 0.07 1.5e-11 1.1e-09 1.0e-10 7.9e-11
4 pVTA gene expression LOC120097019 0.17 0.11 4.6e-06 0.08 0.06 0.08 0.08 6.0e-07 1.1e-05 2.6e-07 3.0e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.11.92.21.21.51.51.3
Area under the delay curve2.12.46.5-2.6-0.5-1.0-1.5
BMI with tail0.20.61.4-1.2-0.9-0.4-0.5
BMI without tail0.10.41.50.2-1.2-0.0-0.1
Body weight0.31.43.7-1.9-0.2-1.1-0.8
Weight adjusted by age0.81.33.0-1.1-0.3-1.7-0.9
Bone surface0.81.42.61.01.61.01.0
Bone volume0.71.22.60.71.61.00.7
Breakpoint value in progressive ratio session0.40.41.3-1.2-0.3-0.1-0.5
Number of licking bursts0.10.20.5-0.7-0.40.50.2
Context. condit. distance diff. score1.11.31.81.2-1.31.30.6
Locomotion velocity, session 10.30.31.2-0.31.10.2-0.0
Locomotion distance, session 10.70.93.60.01.90.10.1
Locomotion velocity, session 20.30.41.3-0.41.10.1-0.0
Locomotion distance, session 21.11.65.90.42.40.40.4
Locomotion velocity, session 31.11.31.8-1.0-1.3-1.1-1.0
Locomotion distance, session 30.40.50.8-0.8-0.9-0.4-0.4
Stereotopy head waving bouts, day 30.10.10.10.40.2-0.30.3
Stereotopy head waving duration, day 30.80.92.0-0.6-0.6-1.4-1.0
Locomotion velocity, session 72.02.24.41.2-0.82.11.5
Locomotion distance, session 72.73.46.91.80.12.61.8
Stereotopy head waving bouts, day 70.91.01.6-1.3-0.2-1.2-0.9
Stereotopy head waving duration, day 71.92.33.7-1.7-1.0-1.9-1.4
Locomotion velocity, session 80.20.20.4-0.2-0.7-0.2-0.5
Locomotion distance, session 80.40.61.20.70.51.10.5
Degree of sensitization distance5.05.17.92.70.92.82.2
Degree of sensitization stereotypy1.31.51.9-1.4-0.7-1.3-1.3
Conditioned locomotion0.30.30.90.9-0.20.50.2
Cocaine response after cond. corrected0.40.51.80.2-1.30.1-0.5
Cocaine response after cond. not corrected0.20.20.7-0.0-0.80.4-0.3
Cocaine response before conditioning0.80.92.4-0.51.60.60.8
Saline control response0.30.41.6-0.21.2-0.20.2
Bone: connectivity density3.25.07.21.91.92.32.7
Bone: cortical apparent density0.30.51.3-0.7-1.1-0.1-0.3
Bone: cortical area0.50.81.6-1.30.2-0.7-1.0
Bone: cortical porosity0.91.02.3-1.5-0.0-1.0-0.8
Bone: cortical porosity1.01.12.0-1.40.1-1.3-1.0
Bone: cortical thickness0.91.43.5-1.9-0.5-0.8-1.1
Bone: cortical thickness0.81.01.9-1.4-1.0-0.0-1.0
Bone: cortical tissue density0.40.51.5-0.6-1.2-0.1-0.3
Condit. Reinf. active minus inactive responses0.10.20.3-0.50.5-0.3-0.1
Condit. Reinf. active-inactive response ratio0.10.10.10.2-0.3-0.3-0.1
Condit. Reinf. active responses0.50.61.9-0.71.4-0.00.2
Condit. Reinf. inactive responses1.41.74.9-0.62.20.71.0
Incentive salience index mean0.70.92.2-1.50.8-0.7-0.3
Condit. Reinf. lever presses1.01.43.6-1.91.3-0.5-0.2
Condit. Reinf. active minus inactive responses0.20.20.40.50.60.40.4
Condit. Reinf. active-inactive response ratio0.10.10.40.3-0.6-0.1-0.1
Condit. Reinf. active responses0.30.40.80.70.90.50.4
Condit. Reinf. inactive responses1.31.73.01.11.71.31.0
Condit. Reinf. lever presses0.10.20.60.20.8-0.4-0.0
Condit. Reinf. lever reinforcers received0.10.20.40.40.60.20.1
Conditioned reinforcement - actives1.32.26.42.50.41.20.9
Conditioned reinforcement - inactives2.63.86.51.41.32.32.6
Conditioned locomotion0.50.61.30.9-1.10.5-0.1
Patch foraging indifference point 0 sec1.52.88.9-0.13.00.91.2
Patch foraging indifference point AUC1.52.14.10.1-2.0-1.2-1.7
Delay disc. indifference point, 0s delay1.21.33.0-0.01.71.01.0
Delay disc. indifference point, 16s delay1.51.73.7-1.9-0.6-0.9-1.4
Delay disc. indifference point, 2s delay0.40.41.2-0.71.1-0.1-0.3
Delay disc. indifference point, 24s delay1.21.43.5-1.9-0.3-0.5-1.2
Delay disc. indifference point, 4s delay2.52.65.0-2.2-1.1-1.4-1.5
Delay disc. indifference point, 8s delay2.42.86.4-2.5-1.1-1.2-1.5
Indifference point function ln k0.50.81.9-0.71.40.60.8
Indifference point function log k0.50.81.9-0.71.40.60.8
Patch foraging total patch changes 0 sec1.22.27.6-0.52.80.50.8
Patch foraging total patch changes 12 sec0.20.30.8-0.50.90.1-0.1
Patch foraging total patch changes 18 sec0.10.10.20.40.40.0-0.3
Patch foraging total patch changes 24 sec0.20.40.7-0.30.8-0.6-0.6
Patch foraging total patch changes 6 sec0.00.10.2-0.20.5-0.00.0
Patch foraging time to switch 0 sec0.71.32.10.61.11.41.4
Patch foraging water rate 0 sec0.51.01.8-1.30.0-1.1-1.0
Patch foraging water rate 12 sec0.20.50.9-0.90.4-0.9-0.4
Patch foraging water rate 18 sec3.25.06.8-2.2-1.7-2.6-2.3
Patch foraging water rate 24 sec0.40.50.7-0.3-0.9-0.8-0.8
Patch foraging water rate 6 sec1.31.93.5-1.2-0.3-1.9-1.6
Seeking ratio, delayed vs. immediate footshock1.72.13.90.22.01.31.7
Distance traveled before self-admin0.30.40.80.2-0.4-0.9-0.9
Distance traveled after self-admin1.01.22.3-0.6-0.6-1.4-1.5
Extensor digitorum longus weight8.031.338.1-5.6-4.7-6.2-5.9
Bone: elastic displacement0.70.82.40.51.50.40.6
Bone: elastic work0.70.93.0-0.71.7-0.3-0.1
Bone: endosteal estimation0.10.20.40.50.6-0.1-0.1
Bone: endosteal perimeter0.51.12.51.21.60.30.5
Epididymis fat weight0.10.40.7-0.50.90.50.5
Delta time in closed arm before/after self-admin1.61.52.30.70.91.51.5
Delta time in open arm before/after self-admin0.20.20.2-0.4-0.4-0.4-0.4
Diff in mean of infusions in LGA sessions1.61.96.2-2.50.5-0.9-0.5
Delay discount exponential model param3.03.47.52.70.91.41.8
Extinction: sum of active levers before priming0.30.40.8-0.50.90.60.3
Active lever presses in extinction session 60.20.20.40.4-0.40.70.2
Bone: final force0.60.91.9-1.4-0.1-0.8-1.0
Bone: final moment0.50.81.6-1.30.1-0.9-1.0
Food consumed during 24 hour testing period0.20.30.80.00.1-0.9-0.6
Glucose1.01.63.6-0.5-1.9-0.9-1.4
Heart weight0.20.30.60.50.80.40.5
Delay discount hyperbolic model param2.52.86.42.50.71.21.7
Intermittent access intake day 1-15 change0.50.91.91.40.50.90.9
Intermittent access intake escalation0.20.50.91.00.30.70.7
Intermittent access intake escalation 20.10.10.40.6-0.10.10.2
Intermitt. access day 1 inactive lever presses0.72.86.01.00.62.02.5
Intermitt. access day 15 inactive lever presses0.20.31.2-0.1-1.1-0.10.4
Intermitt. access escalation Index0.30.50.70.50.80.80.6
Intermittent access day 1 total infusions0.10.20.60.8-0.30.2-0.2
Intermittent access day 15 total infusions0.71.12.61.6-0.01.00.8
Intermittent access terminal intake (last 3 days)0.71.02.91.7-1.00.30.0
Intermittent access total infusions1.11.33.31.8-0.31.20.7
Intermittent access day 1 locomotion0.20.30.4-0.40.60.60.3
Intermittent access day 15 total locomotion0.30.51.50.8-1.2-0.1-0.2
Intermittent access total locomotion0.10.10.30.5-0.40.30.2
Intermittent access standard deviation0.81.72.11.1-1.4-1.3-1.3
Left kidney weight0.21.02.0-1.4-0.4-1.1-0.7
Right kidney weight0.31.13.6-1.90.9-0.30.3
Cocaine induced anxiety0.50.71.4-1.21.0-0.5-0.1
Post-drug Anxiety1.31.44.4-0.92.10.10.5
Baseline Anxiety0.20.20.50.10.70.60.3
Tail length0.20.61.10.61.10.50.8
Length with tail0.20.92.9-0.71.7-0.00.5
Length without tail0.72.35.9-2.40.4-1.4-1.0
Times rat made contact with spout0.00.00.10.3-0.30.0-0.1
Lifetime Intake1.01.23.51.9-0.30.90.5
Liver weight, left0.61.01.9-1.3-0.0-1.4-0.7
Liver weight, right2.23.94.7-1.8-1.9-2.0-2.2
Locomotor activity1.62.54.6-2.11.5-1.6-0.8
Locomotor testing distance2.13.812.9-0.23.60.61.3
Locomotor testing rearing3.06.018.30.64.31.12.0
Locomotion in novel chamber0.10.20.5-0.7-0.2-0.1-0.2
Locomotion in novel chamber post-restriction0.91.42.4-0.5-1.1-1.3-1.6
Fecal boli incidents, locomotor time 11.62.43.60.0-1.5-1.9-1.9
Change in fecal boli incidents, locomotor task0.50.51.1-0.00.40.81.1
Time >=10cm from walls, locomotor time 10.40.40.8-0.10.80.40.9
Bouts of movement, locomotor time 10.50.61.20.3-1.1-0.7-0.8
Total resting periods, locomotor time 10.80.92.10.5-1.4-0.7-0.9
Rest time, locomotor task time 10.40.51.60.3-1.3-0.1-0.6
Distance moved, locomotor task time 10.40.61.10.11.10.60.8
Vertical activity count, locomotor time 10.20.61.2-0.71.1-0.7-0.4
Time >=10cm from walls, locomotor time 20.00.00.10.1-0.1-0.10.3
Bouts of movement, locomotor time 21.11.71.9-1.4-1.2-1.3-1.3
Total resting periods, locomotor time 21.62.83.4-1.6-1.8-1.6-1.7
Rest time, locomotor task time 25.57.012.5-1.2-3.5-2.3-3.0
Distance moved, locomotor task time 22.12.55.00.62.21.41.6
Vertical activity count, locomotor time 20.71.03.7-0.01.90.30.4
Light reinforcement 10.20.40.8-0.00.60.90.6
Light reinforcement 20.30.41.30.5-1.10.3-0.1
Bone: marrow area0.10.20.50.60.7-0.0-0.0
Bone: maximum diameter0.50.91.9-0.7-0.3-1.1-1.4
Bone: maximum force1.11.93.0-1.7-0.1-1.3-1.7
Bone: maximum moment1.01.82.5-1.60.2-1.4-1.6
Mean time between licks in bursts2.15.05.82.31.92.32.4
Mean num. licks in bursts0.20.30.80.90.1-0.4-0.3
Cd content in liver0.60.71.9-0.4-0.1-1.4-0.7
Co content in liver2.22.63.4-1.1-1.7-1.7-1.8
Cu content in liver0.70.91.3-0.8-1.1-0.9-0.8
Fe content in liver2.02.43.71.21.41.51.9
K content in liver0.70.71.30.60.41.10.9
Mg content in liver1.41.52.71.60.91.21.0
Mn content in liver1.61.82.31.21.51.41.1
Na content in liver3.13.37.1-2.70.1-1.9-1.5
Rb content in liver0.40.51.11.1-0.00.40.8
Se content in liver2.83.37.90.22.81.41.8
Sr content in liver1.00.91.20.91.00.81.1
Zn content in liver0.80.91.51.11.20.60.7
Bone: minimum diameter0.30.61.0-0.70.4-1.0-0.9
Time in familiar zone, hab. session 10.10.10.20.40.40.40.1
Time in novel zone, hab. session 11.91.92.7-1.3-1.7-1.3-1.2
Total zone transitions, hab. session 10.40.60.7-0.80.7-0.6-0.8
Total locomotion distance, hab. session 10.40.62.3-0.21.50.2-0.1
Locomotion velocity, hab. session 11.01.55.4-0.22.30.50.3
Time in familiar zone, hab. session 20.30.30.90.4-1.00.1-0.0
Time in novel zone, hab. session 20.20.20.7-0.20.80.0-0.1
Total zone transitions, hab. session 20.50.61.0-0.70.6-1.0-0.8
Total locomotion distance, hab. session 20.20.30.9-0.41.0-0.1-0.2
Locomotion velocity, hab. session 20.30.40.9-0.70.9-0.4-0.5
Novel to familiar place preference ratio0.30.30.70.50.90.30.2
Novelty place preference0.40.41.00.61.00.30.3
Time in novel zone, NPP test0.30.31.00.41.00.20.2
Total zone transitions, NPP test0.60.93.3-0.01.80.50.4
Total locomotion distance, NPP test3.85.210.11.43.22.22.0
Locomotion velocity, NPP test3.24.57.91.42.82.11.8
Intraocular pressure2.13.04.72.21.71.31.7
Delta distance traveled before/after self-admin0.60.60.9-1.0-0.3-0.7-0.9
Delta ambulatory time before/after self-admin0.50.61.0-0.8-0.2-0.9-1.0
Parametrial fat weight1.73.95.02.21.92.01.7
Pavlov. Cond. lever latency0.40.51.41.2-0.50.60.4
Pavlov. Cond. magazine entry latency0.10.20.6-0.70.1-0.40.1
Pavlov. Cond. change in total contacts2.22.44.0-2.0-0.0-1.7-1.5
Pavlov. Cond. index score1.11.44.2-2.00.1-1.1-0.6
Pavlov. Cond. latency score0.81.03.0-1.70.3-0.9-0.5
Pavlov. Cond. lever contacts0.50.61.7-1.30.5-0.6-0.2
Pavlov. Cond. magazine entry number1.11.43.01.70.51.30.9
Pavlov. Cond. intertrial magazine entries0.50.62.00.01.40.30.5
Pavlov. Cond. lever-magazine prob. diff.1.41.84.9-2.2-0.0-1.2-0.8
Pavlov. Cond. response bias1.11.33.0-1.7-0.4-1.2-0.8
Pavlov. Cond. lever latency0.81.12.40.90.11.51.1
Pavlov. Cond. magazine entry latency0.60.72.4-1.60.3-0.5-0.4
Pavlov. Cond. change in total contacts2.23.56.0-1.9-0.9-2.4-1.9
Pavlov. Cond. index score1.01.42.6-1.6-0.1-1.4-1.0
Pavlov. Cond. latency score0.91.22.4-1.60.2-1.3-0.8
Pavlov. Cond. lever contacts0.81.02.3-0.9-0.1-1.5-1.1
Pavlov. Cond. magazine entry number0.30.41.01.0-0.60.20.2
Pavlov. Cond. intertrial magazine entries6.810.213.13.62.83.33.1
Pavlov. Cond. lever-magazine prob. diff.1.21.63.0-1.7-0.2-1.4-1.1
Pavlov. Cond. response bias0.91.21.9-1.40.0-1.4-1.1
Time in closed arm before self-admin0.40.51.3-1.2-0.4-0.7-0.3
Time in closed arm after self-admin0.70.81.2-0.21.10.91.1
Time in open arm before self-admin0.60.61.10.81.10.70.5
Time in open arm after self-admin0.00.00.00.2-0.10.10.1
Bone: periosteal estimation0.10.20.4-0.30.4-0.5-0.6
Bone: periosteal perimeter0.20.41.60.01.20.00.0
Bone: post-yield work1.31.93.9-0.2-1.8-0.7-2.0
Progressive ratio test 1 active lever presses0.50.61.30.8-1.1-0.1-0.6
Progressive ratio test 1 breakpoint0.50.61.30.7-1.2-0.2-0.7
Progressive ratio test 1 inactive lever presses1.31.82.61.11.11.51.6
Progressive ratio test 2 active lever presses0.60.71.51.2-1.1-0.1-0.2
Progressive ratio test 2 breakpoint0.50.61.21.1-1.0-0.2-0.2
Progressive ratio test 2 inactive lever presses0.91.43.21.8-0.61.01.1
Incentive Sensitization - Responses0.20.30.70.9-0.4-0.30.1
Incentive Sensitization - Breakpoint0.20.20.80.9-0.4-0.30.1
Sum of active levers in priming session hrs 5-60.30.20.7-0.00.10.90.5
Progressive ratio0.71.11.8-1.1-0.5-1.3-1.1
Food seeking constrained by brief footshock0.40.51.90.2-1.40.30.1
Seeking ratio, punishment vs. effort0.30.50.60.6-0.80.80.6
Retroperitoneal fat weight0.41.51.81.11.21.41.3
Reaction time number correct0.10.30.90.9-0.10.20.4
Reaction time mean minus median0.10.20.5-0.70.5-0.40.1
Reaction time mean minus median AUC0.10.20.4-0.30.60.10.5
Reaction time num false alarms0.30.40.8-0.90.90.30.2
Reaction time num false alarms AUC0.20.30.8-0.90.5-0.2-0.3
Reaction time trials correct on left0.10.30.90.9-0.10.20.4
Reaction time trials on left0.20.41.11.10.00.30.5
Reaction time mean0.10.20.50.2-0.2-0.7-0.4
Reaction time mean AUC0.20.30.8-0.0-0.1-0.9-0.5
Median of all reaction times0.20.30.60.4-0.5-0.8-0.5
Reaction time omissions1.82.64.72.21.11.41.6
Reaction time false alarm rate0.30.51.7-1.30.3-0.1-0.3
Reaction time premature initiation rate0.71.01.2-1.1-1.1-1.0-0.8
Reaction time premature initiations0.30.61.2-0.3-1.1-0.8-0.6
Std. dev. reaction times0.00.10.2-0.0-0.0-0.5-0.1
Reaction time trials completed0.20.41.11.10.00.30.5
Reaction time trials AUC0.20.41.31.20.00.30.4
Run reversals in cocaine runway, females0.10.10.50.1-0.00.70.1
Run reversals in cocaine runway, males6.26.28.1-2.0-2.4-2.7-2.8
Latency to leave start box in cocaine runway0.70.82.81.7-0.7-0.20.0
Latency to leave start box in cocaine runway, F0.80.91.70.8-1.3-1.0-0.6
Latency to leave start box in cocaine runway, M0.80.82.11.40.50.60.6
Std. dev. time between licks in bursts3.85.210.51.53.21.92.1
Total sessions with >9 infusions0.30.41.21.1-0.10.40.3
Short access day 1 total inactive lever presses1.62.13.80.5-1.9-1.4-1.6
Short access day 10 total inactive lever presses0.10.30.50.70.20.50.6
Short access day 1 total infusions1.01.34.62.2-0.80.2-0.1
Short access day 10 total infusions0.10.20.30.2-0.2-0.4-0.6
Short access total infusions0.30.41.31.1-0.4-0.2-0.4
Short access day 1 locomotion0.10.10.20.3-0.1-0.5-0.4
Short access day 10 total locomotion0.10.10.2-0.10.40.30.5
Short access total locomotion0.00.10.1-0.20.1-0.3-0.2
One hour access (0.3 mA shock)0.30.40.90.9-0.00.80.3
Compulsive drug intake1.51.82.80.01.51.71.5
One hour access (shock baseline)0.30.51.71.3-0.60.1-0.2
Social response proportion1.31.43.71.9-0.40.91.0
Social responses4.25.46.02.32.22.32.4
Social time0.60.82.10.41.40.50.9
Soleus weight0.41.22.1-1.1-1.4-0.8-1.0
Bone: stiffness0.91.42.3-1.5-0.8-1.1-1.2
Tibialis anterior weight6.321.427.6-5.3-3.4-4.9-4.7
Time to tail flick, vehicle, before self-admin0.60.62.4-1.60.3-0.00.1
Time to tail flick, vehicle, after self-admin1.92.54.6-1.4-2.1-1.3-1.3
Time to tail flick, test, before self-admin0.60.61.5-0.11.20.70.6
Time to tail flick, test, after self-admin2.93.05.72.40.91.61.7
Delta time to tail flick, vehicle, before/after SA1.31.33.20.8-1.8-0.8-0.8
Delta time to tail flick, test, before/after SA1.71.84.22.0-0.51.11.2
Tibia length1.02.77.0-1.32.60.51.3
Ambulatory time before self-admin0.30.50.90.1-0.5-0.9-1.0
Ambulatory time after self-admin2.32.74.4-1.2-1.0-2.0-2.1
Bone: tissue strength0.10.10.30.60.4-0.2-0.3
Total heroin consumption1.71.92.6-1.0-1.5-1.4-1.6
Bone: trabecular number1.93.13.81.51.71.92.0
Bone: trabecular spacing2.22.94.4-2.1-1.3-1.6-1.8
Bone: trabecular thickness0.20.30.6-0.60.80.2-0.0
Bone: trabecular tissue density1.82.75.8-2.4-1.1-1.5-1.3
Water consumed over 24 hours0.81.11.7-1.0-0.6-1.3-1.2
Number of responses in last shaping day1.21.42.2-0.9-0.5-1.4-1.5