LOC120097019

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC120097019 0.04 0.02 3.3e-05 0.04 0.03 0.02 0.02 7.5e-05 4.1e-04 1.8e-03 1.1e-03
2 PL gene expression LOC120097019 0.03 0.02 1.3e-03 0.02 0.02 0.01 0.01 5.3e-03 5.5e-03 1.1e-02 1.8e-02
3 NAcc gene expression LOC120097019 0.07 0.03 5.0e-10 0.08 0.06 0.07 0.07 1.5e-11 1.1e-09 1.0e-10 7.4e-11
4 pVTA gene expression LOC120097019 0.17 0.11 4.6e-06 0.08 0.06 0.08 0.08 6.0e-07 1.1e-05 2.6e-07 3.0e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.01.92.2-1.2-1.5-1.5-1.3
Area under the delay curve1.62.46.52.60.51.01.5
BMI with tail0.20.61.41.20.90.40.5
BMI without tail0.10.41.5-0.21.20.00.1
Body weight0.31.43.71.90.21.10.8
Weight adjusted by age0.41.33.01.10.31.70.9
Bone surface0.71.42.6-1.0-1.6-1.0-1.0
Bone volume0.61.22.6-0.7-1.6-1.0-0.7
Breakpoint value in progressive ratio session0.20.41.31.20.30.10.5
Number of licking bursts0.10.20.50.70.4-0.5-0.2
Context. condit. distance diff. score1.11.31.8-1.21.3-1.3-0.6
Locomotion velocity, session 10.30.31.20.3-1.1-0.20.0
Locomotion distance, session 10.70.93.6-0.0-1.9-0.1-0.1
Locomotion velocity, session 20.30.41.30.4-1.1-0.10.0
Locomotion distance, session 21.11.65.9-0.4-2.4-0.4-0.4
Locomotion velocity, session 31.11.31.81.01.31.11.0
Locomotion distance, session 30.40.50.80.80.90.40.4
Stereotopy head waving bouts, day 30.10.10.1-0.4-0.20.3-0.3
Stereotopy head waving duration, day 30.70.92.00.60.61.41.0
Locomotion velocity, session 72.02.24.4-1.20.8-2.1-1.5
Locomotion distance, session 72.73.46.9-1.8-0.1-2.6-1.8
Stereotopy head waving bouts, day 70.81.01.61.30.21.20.9
Stereotopy head waving duration, day 71.92.33.71.71.01.91.4
Locomotion velocity, session 80.20.20.40.20.70.20.5
Locomotion distance, session 80.40.61.2-0.7-0.5-1.1-0.5
Degree of sensitization distance4.85.17.9-2.7-0.9-2.8-2.2
Degree of sensitization stereotypy1.31.51.91.40.71.31.3
Conditioned locomotion0.30.30.9-0.90.2-0.5-0.2
Cocaine response after cond. corrected0.40.51.8-0.21.3-0.10.5
Cocaine response after cond. not corrected0.20.20.70.00.8-0.40.3
Cocaine response before conditioning0.70.92.40.5-1.6-0.6-0.8
Saline control response0.30.41.60.2-1.20.2-0.2
Bone: connectivity density3.15.07.2-1.9-1.9-2.3-2.7
Bone: cortical apparent density0.30.51.30.71.10.10.3
Bone: cortical area0.50.81.61.3-0.20.71.0
Bone: cortical porosity0.91.02.31.50.01.00.8
Bone: cortical porosity1.01.12.01.4-0.11.31.0
Bone: cortical thickness0.81.43.51.90.50.81.1
Bone: cortical thickness0.81.01.91.41.00.01.0
Bone: cortical tissue density0.30.51.50.61.20.10.3
Condit. Reinf. active minus inactive responses0.10.20.30.5-0.50.30.1
Condit. Reinf. active-inactive response ratio0.10.10.1-0.20.30.30.1
Condit. Reinf. active responses0.50.61.90.7-1.40.0-0.2
Condit. Reinf. inactive responses1.31.74.90.6-2.2-0.7-1.0
Incentive salience index mean0.70.92.21.5-0.80.70.3
Condit. Reinf. lever presses0.91.43.61.9-1.30.50.2
Condit. Reinf. active minus inactive responses0.10.20.4-0.5-0.6-0.4-0.4
Condit. Reinf. active-inactive response ratio0.10.10.4-0.30.60.10.1
Condit. Reinf. active responses0.30.40.8-0.7-0.9-0.5-0.4
Condit. Reinf. inactive responses1.21.73.0-1.1-1.7-1.3-1.0
Condit. Reinf. lever presses0.10.20.6-0.2-0.80.40.0
Condit. Reinf. lever reinforcers received0.10.20.4-0.4-0.6-0.2-0.1
Conditioned reinforcement - actives0.62.26.4-2.5-0.4-1.2-0.9
Conditioned reinforcement - inactives1.43.86.5-1.4-1.3-2.3-2.6
Conditioned locomotion0.40.61.3-0.91.1-0.50.1
Patch foraging indifference point 0 sec1.02.88.90.1-3.0-0.9-1.2
Patch foraging indifference point AUC0.92.14.1-0.12.01.21.7
Delay disc. indifference point, 0s delay1.11.33.00.0-1.7-1.0-1.0
Delay disc. indifference point, 16s delay1.21.73.71.90.60.91.4
Delay disc. indifference point, 2s delay0.40.41.20.7-1.10.10.3
Delay disc. indifference point, 24s delay0.91.43.51.90.30.51.2
Delay disc. indifference point, 4s delay2.52.65.02.21.11.41.5
Delay disc. indifference point, 8s delay1.72.86.42.51.11.21.5
Indifference point function ln k0.30.81.90.7-1.4-0.6-0.8
Indifference point function log k0.30.81.90.7-1.4-0.6-0.8
Patch foraging total patch changes 0 sec0.82.27.60.5-2.8-0.5-0.8
Patch foraging total patch changes 12 sec0.20.30.80.5-0.9-0.10.1
Patch foraging total patch changes 18 sec0.00.10.2-0.4-0.4-0.00.3
Patch foraging total patch changes 24 sec0.10.40.70.3-0.80.60.6
Patch foraging total patch changes 6 sec0.00.10.20.2-0.50.0-0.0
Patch foraging time to switch 0 sec0.41.32.1-0.6-1.1-1.4-1.4
Patch foraging water rate 0 sec0.31.01.81.3-0.01.11.0
Patch foraging water rate 12 sec0.10.50.90.9-0.40.90.4
Patch foraging water rate 18 sec2.25.06.82.21.72.62.3
Patch foraging water rate 24 sec0.40.50.70.30.90.80.8
Patch foraging water rate 6 sec1.31.93.51.20.31.91.6
Seeking ratio, delayed vs. immediate footshock1.52.13.9-0.2-2.0-1.3-1.7
Distance traveled before self-admin0.20.40.8-0.20.40.90.9
Distance traveled after self-admin0.71.22.30.60.61.41.5
Extensor digitorum longus weight7.831.338.15.64.76.25.9
Bone: elastic displacement0.60.82.4-0.5-1.5-0.4-0.6
Bone: elastic work0.70.93.00.7-1.70.30.1
Bone: endosteal estimation0.10.20.4-0.5-0.60.10.1
Bone: endosteal perimeter0.41.12.5-1.2-1.6-0.3-0.5
Epididymis fat weight0.10.40.70.5-0.9-0.5-0.5
Delta time in closed arm before/after self-admin1.61.52.3-0.7-0.9-1.5-1.5
Delta time in open arm before/after self-admin0.10.20.20.40.40.40.4
Diff in mean of infusions in LGA sessions1.11.96.22.5-0.50.90.5
Delay discount exponential model param2.53.47.5-2.7-0.9-1.4-1.8
Extinction: sum of active levers before priming0.20.40.80.5-0.9-0.6-0.3
Active lever presses in extinction session 60.20.20.4-0.40.4-0.7-0.2
Bone: final force0.50.91.91.40.10.81.0
Bone: final moment0.50.81.61.3-0.10.91.0
Food consumed during 24 hour testing period0.10.30.8-0.0-0.10.90.6
Glucose1.01.63.60.51.90.91.4
Heart weight0.20.30.6-0.5-0.8-0.4-0.5
Delay discount hyperbolic model param2.22.86.4-2.5-0.7-1.2-1.7
Intermittent access intake day 1-15 change0.20.91.9-1.4-0.5-0.9-0.9
Intermittent access intake escalation0.10.50.9-1.0-0.3-0.7-0.7
Intermittent access intake escalation 20.10.10.4-0.60.1-0.1-0.2
Intermitt. access day 1 inactive lever presses0.22.86.0-1.0-0.6-2.0-2.5
Intermitt. access day 15 inactive lever presses0.10.31.20.11.10.1-0.4
Intermitt. access escalation Index0.10.50.7-0.5-0.8-0.8-0.6
Intermittent access day 1 total infusions0.10.20.6-0.80.3-0.20.2
Intermittent access day 15 total infusions0.41.12.6-1.60.0-1.0-0.8
Intermittent access terminal intake (last 3 days)0.61.02.9-1.71.0-0.3-0.0
Intermittent access total infusions1.11.33.3-1.80.3-1.2-0.7
Intermittent access day 1 locomotion0.10.30.40.4-0.6-0.6-0.3
Intermittent access day 15 total locomotion0.10.51.5-0.81.20.10.2
Intermittent access total locomotion0.10.10.3-0.50.4-0.3-0.2
Intermittent access standard deviation0.31.72.1-1.11.41.31.3
Left kidney weight0.11.02.01.40.41.10.7
Right kidney weight0.21.13.61.9-0.90.3-0.3
Cocaine induced anxiety0.20.71.41.2-1.00.50.1
Post-drug Anxiety1.21.44.40.9-2.1-0.1-0.5
Baseline Anxiety0.10.20.5-0.1-0.7-0.6-0.3
Tail length0.10.61.1-0.6-1.1-0.5-0.8
Length with tail0.20.92.90.7-1.70.0-0.5
Length without tail0.42.35.92.4-0.41.41.0
Times rat made contact with spout0.00.00.1-0.30.3-0.00.1
Lifetime Intake0.91.23.5-1.90.3-0.9-0.5
Liver weight, left0.61.01.91.30.01.40.7
Liver weight, right2.23.94.71.81.92.02.2
Locomotor activity1.62.54.62.1-1.51.60.8
Locomotor testing distance1.53.812.90.2-3.6-0.6-1.3
Locomotor testing rearing1.66.018.3-0.6-4.3-1.1-2.0
Locomotion in novel chamber0.10.20.50.70.20.10.2
Locomotion in novel chamber post-restriction0.51.42.40.51.11.31.6
Fecal boli incidents, locomotor time 10.92.43.6-0.01.51.91.9
Change in fecal boli incidents, locomotor task0.50.51.10.0-0.4-0.8-1.1
Time >=10cm from walls, locomotor time 10.30.40.80.1-0.8-0.4-0.9
Bouts of movement, locomotor time 10.50.61.2-0.31.10.70.8
Total resting periods, locomotor time 10.80.92.1-0.51.40.70.9
Rest time, locomotor task time 10.30.51.6-0.31.30.10.6
Distance moved, locomotor task time 10.20.61.1-0.1-1.1-0.6-0.8
Vertical activity count, locomotor time 10.10.61.20.7-1.10.70.4
Time >=10cm from walls, locomotor time 20.00.00.1-0.10.10.1-0.3
Bouts of movement, locomotor time 20.51.71.91.41.21.31.3
Total resting periods, locomotor time 20.72.83.41.61.81.61.7
Rest time, locomotor task time 24.27.012.51.23.52.33.0
Distance moved, locomotor task time 21.92.55.0-0.6-2.2-1.4-1.6
Vertical activity count, locomotor time 20.41.03.70.0-1.9-0.3-0.4
Light reinforcement 10.10.40.80.0-0.6-0.9-0.6
Light reinforcement 20.20.41.3-0.51.1-0.30.1
Bone: marrow area0.10.20.5-0.6-0.70.00.0
Bone: maximum diameter0.50.91.90.70.31.11.4
Bone: maximum force0.91.93.01.70.11.31.7
Bone: maximum moment0.91.82.51.6-0.21.41.6
Mean time between licks in bursts0.85.05.8-2.3-1.9-2.3-2.4
Mean num. licks in bursts0.10.30.8-0.9-0.10.40.3
Cd content in liver0.60.71.90.40.11.40.7
Co content in liver2.22.63.41.11.71.71.8
Cu content in liver0.70.91.30.81.10.90.8
Fe content in liver1.92.43.7-1.2-1.4-1.5-1.9
K content in liver0.70.71.3-0.6-0.4-1.1-0.9
Mg content in liver1.31.52.7-1.6-0.9-1.2-1.0
Mn content in liver1.61.82.3-1.2-1.5-1.4-1.1
Na content in liver2.93.37.12.7-0.11.91.5
Rb content in liver0.40.51.1-1.10.0-0.4-0.8
Se content in liver2.83.37.9-0.2-2.8-1.4-1.8
Sr content in liver1.00.91.2-0.9-1.0-0.8-1.1
Zn content in liver0.80.91.5-1.1-1.2-0.6-0.7
Bone: minimum diameter0.30.61.00.7-0.41.00.9
Time in familiar zone, hab. session 10.10.10.2-0.4-0.4-0.4-0.1
Time in novel zone, hab. session 11.71.92.71.31.71.31.2
Total zone transitions, hab. session 10.40.60.70.8-0.70.60.8
Total locomotion distance, hab. session 10.40.62.30.2-1.5-0.20.1
Locomotion velocity, hab. session 11.01.55.40.2-2.3-0.5-0.3
Time in familiar zone, hab. session 20.20.30.9-0.41.0-0.10.0
Time in novel zone, hab. session 20.20.20.70.2-0.8-0.00.1
Total zone transitions, hab. session 20.50.61.00.7-0.61.00.8
Total locomotion distance, hab. session 20.20.30.90.4-1.00.10.2
Locomotion velocity, hab. session 20.30.40.90.7-0.90.40.5
Novel to familiar place preference ratio0.20.30.7-0.5-0.9-0.3-0.2
Novelty place preference0.30.41.0-0.6-1.0-0.3-0.3
Time in novel zone, NPP test0.30.31.0-0.4-1.0-0.2-0.2
Total zone transitions, NPP test0.60.93.30.0-1.8-0.5-0.4
Total locomotion distance, NPP test3.75.210.1-1.4-3.2-2.2-2.0
Locomotion velocity, NPP test3.14.57.9-1.4-2.8-2.1-1.8
Intraocular pressure1.93.04.7-2.2-1.7-1.3-1.7
Delta distance traveled before/after self-admin0.50.60.91.00.30.70.9
Delta ambulatory time before/after self-admin0.30.61.00.80.20.91.0
Parametrial fat weight1.73.95.0-2.2-1.9-2.0-1.7
Pavlov. Cond. lever latency0.40.51.4-1.20.5-0.6-0.4
Pavlov. Cond. magazine entry latency0.10.20.60.7-0.10.4-0.1
Pavlov. Cond. change in total contacts2.22.44.02.00.01.71.5
Pavlov. Cond. index score1.11.44.22.0-0.11.10.6
Pavlov. Cond. latency score0.81.03.01.7-0.30.90.5
Pavlov. Cond. lever contacts0.50.61.71.3-0.50.60.2
Pavlov. Cond. magazine entry number1.11.43.0-1.7-0.5-1.3-0.9
Pavlov. Cond. intertrial magazine entries0.50.62.0-0.0-1.4-0.3-0.5
Pavlov. Cond. lever-magazine prob. diff.1.41.84.92.20.01.20.8
Pavlov. Cond. response bias1.11.33.01.70.41.20.8
Pavlov. Cond. lever latency0.81.12.4-0.9-0.1-1.5-1.1
Pavlov. Cond. magazine entry latency0.50.72.41.6-0.30.50.4
Pavlov. Cond. change in total contacts1.43.56.01.90.92.41.9
Pavlov. Cond. index score0.91.42.61.60.11.41.0
Pavlov. Cond. latency score0.71.22.41.6-0.21.30.8
Pavlov. Cond. lever contacts0.71.02.30.90.11.51.1
Pavlov. Cond. magazine entry number0.30.41.0-1.00.6-0.2-0.2
Pavlov. Cond. intertrial magazine entries4.710.213.1-3.6-2.8-3.3-3.1
Pavlov. Cond. lever-magazine prob. diff.1.01.63.01.70.21.41.1
Pavlov. Cond. response bias0.91.21.91.4-0.01.41.1
Time in closed arm before self-admin0.30.51.31.20.40.70.3
Time in closed arm after self-admin0.70.81.20.2-1.1-0.9-1.1
Time in open arm before self-admin0.50.61.1-0.8-1.1-0.7-0.5
Time in open arm after self-admin0.00.00.0-0.20.1-0.1-0.1
Bone: periosteal estimation0.10.20.40.3-0.40.50.6
Bone: periosteal perimeter0.20.41.6-0.0-1.2-0.0-0.0
Bone: post-yield work1.11.93.90.21.80.72.0
Progressive ratio test 1 active lever presses0.30.61.3-0.81.10.10.6
Progressive ratio test 1 breakpoint0.30.61.3-0.71.20.20.7
Progressive ratio test 1 inactive lever presses0.71.82.6-1.1-1.1-1.5-1.6
Progressive ratio test 2 active lever presses0.50.71.5-1.21.10.10.2
Progressive ratio test 2 breakpoint0.40.61.2-1.11.00.20.2
Progressive ratio test 2 inactive lever presses0.51.43.2-1.80.6-1.0-1.1
Incentive Sensitization - Responses0.10.30.7-0.90.40.3-0.1
Incentive Sensitization - Breakpoint0.10.20.8-0.90.40.3-0.1
Sum of active levers in priming session hrs 5-60.30.20.70.0-0.1-0.9-0.5
Progressive ratio0.41.11.81.10.51.31.1
Food seeking constrained by brief footshock0.40.51.9-0.21.4-0.3-0.1
Seeking ratio, punishment vs. effort0.20.50.6-0.60.8-0.8-0.6
Retroperitoneal fat weight0.31.51.8-1.1-1.2-1.4-1.3
Reaction time number correct0.10.30.9-0.90.1-0.2-0.4
Reaction time mean minus median0.00.20.50.7-0.50.4-0.1
Reaction time mean minus median AUC0.00.20.40.3-0.6-0.1-0.5
Reaction time num false alarms0.20.40.80.9-0.9-0.3-0.2
Reaction time num false alarms AUC0.10.30.80.9-0.50.20.3
Reaction time trials correct on left0.10.30.9-0.90.1-0.2-0.4
Reaction time trials on left0.10.41.1-1.1-0.0-0.3-0.5
Reaction time mean0.10.20.5-0.20.20.70.4
Reaction time mean AUC0.10.30.80.00.10.90.5
Median of all reaction times0.20.30.6-0.40.50.80.5
Reaction time omissions1.62.64.7-2.2-1.1-1.4-1.6
Reaction time false alarm rate0.30.51.71.3-0.30.10.3
Reaction time premature initiation rate0.61.01.21.11.11.00.8
Reaction time premature initiations0.20.61.20.31.10.80.6
Std. dev. reaction times0.00.10.20.00.00.50.1
Reaction time trials completed0.10.41.1-1.1-0.0-0.3-0.5
Reaction time trials AUC0.10.41.3-1.2-0.0-0.3-0.4
Run reversals in cocaine runway, females0.10.10.5-0.10.0-0.7-0.1
Run reversals in cocaine runway, males5.76.28.12.02.42.72.8
Latency to leave start box in cocaine runway0.60.82.8-1.70.70.2-0.0
Latency to leave start box in cocaine runway, F0.70.91.7-0.81.31.00.6
Latency to leave start box in cocaine runway, M0.80.82.1-1.4-0.5-0.6-0.6
Std. dev. time between licks in bursts2.85.210.5-1.5-3.2-1.9-2.1
Total sessions with >9 infusions0.30.41.2-1.10.1-0.4-0.3
Short access day 1 total inactive lever presses1.12.13.8-0.51.91.41.6
Short access day 10 total inactive lever presses0.00.30.5-0.7-0.2-0.5-0.6
Short access day 1 total infusions0.71.34.6-2.20.8-0.20.1
Short access day 10 total infusions0.10.20.3-0.20.20.40.6
Short access total infusions0.30.41.3-1.10.40.20.4
Short access day 1 locomotion0.10.10.2-0.30.10.50.4
Short access day 10 total locomotion0.00.10.20.1-0.4-0.3-0.5
Short access total locomotion0.00.10.10.2-0.10.30.2
One hour access (0.3 mA shock)0.30.40.9-0.90.0-0.8-0.3
Compulsive drug intake1.21.82.8-0.0-1.5-1.7-1.5
One hour access (shock baseline)0.20.51.7-1.30.6-0.10.2
Social response proportion1.11.43.7-1.90.4-0.9-1.0
Social responses4.15.46.0-2.3-2.2-2.3-2.4
Social time0.50.82.1-0.4-1.4-0.5-0.9
Soleus weight0.41.22.11.11.40.81.0
Bone: stiffness0.81.42.31.50.81.11.2
Tibialis anterior weight6.221.427.65.33.44.94.7
Time to tail flick, vehicle, before self-admin0.50.62.41.6-0.30.0-0.1
Time to tail flick, vehicle, after self-admin1.22.54.61.42.11.31.3
Time to tail flick, test, before self-admin0.50.61.50.1-1.2-0.7-0.6
Time to tail flick, test, after self-admin2.83.05.7-2.4-0.9-1.6-1.7
Delta time to tail flick, vehicle, before/after SA1.21.33.2-0.81.80.80.8
Delta time to tail flick, test, before/after SA1.51.84.2-2.00.5-1.1-1.2
Tibia length1.02.77.01.3-2.6-0.5-1.3
Ambulatory time before self-admin0.20.50.9-0.10.50.91.0
Ambulatory time after self-admin1.72.74.41.21.02.02.1
Bone: tissue strength0.10.10.3-0.6-0.40.20.3
Total heroin consumption1.61.92.61.01.51.41.6
Bone: trabecular number1.63.13.8-1.5-1.7-1.9-2.0
Bone: trabecular spacing2.02.94.42.11.31.61.8
Bone: trabecular thickness0.20.30.60.6-0.8-0.20.0
Bone: trabecular tissue density1.52.75.82.41.11.51.3
Water consumed over 24 hours0.61.11.71.00.61.31.2
Number of responses in last shaping day1.01.42.20.90.51.41.5