LOC120097019

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC120097019 0.03 0.02 3.4e-04 0.01 0.02 0.01 0.01 5.7e-02 4.5e-03 6.0e-02 9.3e-03
2 PL gene expression LOC120097019 0.03 0.02 7.5e-04 0.01 0.01 0.01 0 1.5e-02 1.0e-02 5.4e-02 8.0e-02
3 NAcc gene expression LOC120097019 0.19 0.12 5.5e-07 0.06 0.06 0.06 0.06 1.0e-07 6.9e-08 4.2e-07 3.1e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.71.22.61.01.60.2
Area under the delay curve1.81.92.2-1.5-1.5-1.2
BMI with tail0.61.93.3-1.4-1.8-0.7
BMI without tail0.20.51.11.00.40.4
Body weight0.73.15.7-2.4-1.3-1.3
Weight adjusted by age1.82.03.7-1.9-0.6-1.4
Bone surface0.30.61.50.51.2-0.1
Bone volume0.30.51.20.61.1-0.2
Breakpoint value in progressive ratio session0.20.20.70.10.10.8
Number of licking bursts0.00.00.1-0.0-0.30.2
Context. condit. distance diff. score2.42.94.42.10.12.1
Locomotion velocity, session 10.10.10.2-0.10.4-0.4
Locomotion distance, session 10.40.61.0-0.00.8-1.0
Locomotion velocity, session 20.10.10.1-0.30.2-0.3
Locomotion distance, session 20.50.71.60.11.3-0.8
Locomotion velocity, session 31.11.31.4-1.1-1.2-1.0
Locomotion distance, session 30.30.30.5-0.5-0.7-0.4
Stereotopy head waving bouts, day 30.10.10.1-0.40.2-0.2
Stereotopy head waving duration, day 31.51.82.3-1.5-0.9-1.5
Locomotion velocity, session 73.94.37.72.20.52.8
Locomotion distance, session 74.45.67.62.81.52.6
Stereotopy head waving bouts, day 71.72.02.7-1.6-1.1-1.4
Stereotopy head waving duration, day 73.23.85.3-2.3-1.6-1.9
Locomotion velocity, session 80.10.10.30.2-0.6-0.1
Locomotion distance, session 80.71.01.91.40.70.8
Degree of sensitization distance8.28.210.93.32.13.1
Degree of sensitization stereotypy1.51.72.1-1.4-1.3-1.1
Conditioned locomotion0.50.60.90.90.40.9
Cocaine response after cond. corrected0.50.50.60.7-0.70.8
Cocaine response after cond. not corrected0.30.30.40.6-0.50.6
Cocaine response before conditioning0.30.40.8-0.50.9-0.3
Saline control response0.10.10.2-0.20.4-0.2
Bone: connectivity density2.43.86.81.52.61.5
Bone: cortical apparent density0.20.30.8-0.1-0.90.1
Bone: cortical area0.50.81.1-0.7-1.0-1.0
Bone: cortical porosity1.61.73.0-1.7-0.8-1.2
Bone: cortical porosity1.41.62.4-1.6-0.8-1.3
Bone: cortical thickness0.91.52.4-1.1-1.5-1.0
Bone: cortical thickness0.60.72.10.1-1.40.1
Bone: cortical tissue density0.20.30.9-0.1-1.00.1
Condit. Reinf. active minus inactive responses0.20.30.6-0.8-0.1-0.4
Condit. Reinf. active-inactive response ratio0.10.10.1-0.2-0.3-0.2
Condit. Reinf. active responses0.20.20.5-0.70.3-0.2
Condit. Reinf. inactive responses0.50.61.6-0.11.30.3
Incentive salience index mean0.91.12.4-1.6-0.5-0.7
Condit. Reinf. lever presses0.81.12.7-1.7-0.4-0.6
Condit. Reinf. active minus inactive responses0.30.30.40.50.50.7
Condit. Reinf. active-inactive response ratio0.10.10.10.2-0.40.2
Condit. Reinf. active responses0.40.60.80.80.90.7
Condit. Reinf. inactive responses1.82.23.11.31.81.2
Condit. Reinf. lever presses0.30.30.6-0.60.4-0.8
Condit. Reinf. lever reinforcers received0.10.20.30.40.60.3
Conditioned reinforcement - actives3.83.87.82.81.61.0
Conditioned reinforcement - inactives2.73.03.51.41.91.9
Conditioned locomotion1.61.93.01.70.51.5
Patch foraging indifference point 0 sec0.61.02.9-0.41.7-0.1
Patch foraging indifference point AUC1.11.32.90.3-1.7-0.9
Delay disc. indifference point, 0s delay0.40.51.10.31.00.5
Delay disc. indifference point, 16s delay1.21.21.9-1.0-1.4-0.9
Delay disc. indifference point, 2s delay0.30.40.8-0.60.0-0.9
Delay disc. indifference point, 24s delay1.21.12.3-0.9-1.5-0.5
Delay disc. indifference point, 4s delay2.32.42.8-1.7-1.6-1.3
Delay disc. indifference point, 8s delay2.72.83.5-1.9-1.8-1.2
Indifference point function ln k0.30.50.9-0.90.7-0.1
Indifference point function log k0.30.50.9-0.90.7-0.1
Patch foraging total patch changes 0 sec0.50.81.9-0.71.4-0.4
Patch foraging total patch changes 12 sec0.10.10.3-0.20.2-0.6
Patch foraging total patch changes 18 sec0.10.20.40.70.3-0.1
Patch foraging total patch changes 24 sec0.40.51.2-0.50.2-1.1
Patch foraging total patch changes 6 sec0.00.00.0-0.00.2-0.0
Patch foraging time to switch 0 sec0.71.11.40.71.11.2
Patch foraging water rate 0 sec0.91.42.1-1.2-0.8-1.4
Patch foraging water rate 12 sec0.30.40.9-0.9-0.4-0.4
Patch foraging water rate 18 sec4.66.26.5-2.5-2.4-2.6
Patch foraging water rate 24 sec0.20.30.8-0.1-0.90.1
Patch foraging water rate 6 sec2.23.25.2-1.7-1.2-2.3
Seeking ratio, delayed vs. immediate footshock0.91.01.80.21.11.3
Distance traveled before self-admin0.30.30.9-0.1-0.2-0.9
Distance traveled after self-admin0.60.61.5-0.2-0.7-1.2
Extensor digitorum longus weight8.633.836.4-5.6-6.0-5.8
Bone: elastic displacement0.20.20.6-0.00.80.0
Bone: elastic work0.70.91.7-1.00.4-1.3
Bone: endosteal estimation0.00.10.10.20.4-0.2
Bone: endosteal perimeter0.30.51.30.61.1-0.1
Epididymis fat weight0.51.22.60.60.81.6
Delta time in closed arm before/after self-admin0.70.71.30.60.71.1
Delta time in open arm before/after self-admin0.30.20.50.40.30.7
Diff in mean of infusions in LGA sessions2.02.25.4-2.3-1.0-0.6
Delay discount exponential model param2.62.73.31.71.81.4
Extinction: sum of active levers before priming1.21.21.40.91.11.2
Active lever presses in extinction session 60.60.61.00.90.31.0
Bone: final force0.50.80.9-0.9-1.0-0.8
Bone: final moment0.61.01.2-1.1-0.8-1.1
Food consumed during 24 hour testing period0.50.61.3-0.6-0.4-1.1
Glucose0.30.51.50.1-1.2-0.1
Heart weight0.00.00.1-0.3-0.1-0.0
Delay discount hyperbolic model param2.93.03.31.81.81.6
Intermittent access intake day 1-15 change0.50.50.50.70.70.7
Intermittent access intake escalation0.30.30.40.70.40.4
Intermittent access intake escalation 20.20.20.30.30.40.6
Intermitt. access day 1 inactive lever presses2.93.17.01.01.22.6
Intermitt. access day 15 inactive lever presses0.10.10.3-0.50.2-0.0
Intermitt. access escalation Index0.40.40.80.90.10.5
Intermittent access day 1 total infusions0.30.40.50.7-0.7-0.3
Intermittent access day 15 total infusions0.70.81.91.40.00.8
Intermittent access terminal intake (last 3 days)0.40.51.01.0-0.6-0.1
Intermittent access total infusions1.01.12.51.6-0.20.9
Intermittent access day 1 locomotion0.00.00.10.30.00.0
Intermittent access day 15 total locomotion0.20.30.40.6-0.10.6
Intermittent access total locomotion0.10.10.20.3-0.10.5
Intermittent access standard deviation0.20.20.30.2-0.4-0.5
Left kidney weight1.33.75.4-2.3-1.5-1.8
Right kidney weight0.72.05.3-2.30.1-0.9
Cocaine induced anxiety0.20.20.7-0.8-0.0-0.2
Post-drug Anxiety0.70.82.1-0.41.40.4
Baseline Anxiety0.70.81.80.61.30.4
Tail length0.51.43.21.01.80.2
Length with tail0.20.81.7-1.30.4-0.8
Length without tail2.65.710.0-3.2-1.8-1.9
Times rat made contact with spout0.10.10.20.4-0.1-0.3
Lifetime Intake1.01.12.71.60.10.8
Liver weight, left3.76.07.9-2.4-2.8-2.0
Liver weight, right2.44.04.8-1.7-2.1-2.2
Locomotor activity2.54.07.0-2.6-0.5-2.2
Locomotor testing distance0.81.32.7-0.81.6-0.7
Locomotor testing rearing1.62.57.5-0.42.7-0.2
Locomotion in novel chamber0.40.51.0-0.7-0.4-1.0
Locomotion in novel chamber post-restriction0.70.91.2-0.4-1.1-1.1
Fecal boli incidents, locomotor time 12.22.43.9-0.8-1.7-2.0
Change in fecal boli incidents, locomotor task0.50.51.10.10.61.1
Time >=10cm from walls, locomotor time 10.30.31.0-0.21.00.0
Bouts of movement, locomotor time 10.30.30.8-0.1-0.9-0.3
Total resting periods, locomotor time 10.40.41.20.2-1.10.0
Rest time, locomotor task time 10.50.51.30.1-1.1-0.4
Distance moved, locomotor task time 10.60.71.30.41.20.7
Vertical activity count, locomotor time 10.70.81.5-0.70.5-1.2
Time >=10cm from walls, locomotor time 20.10.10.1-0.20.3-0.3
Bouts of movement, locomotor time 21.11.12.3-0.9-1.5-0.6
Total resting periods, locomotor time 21.92.04.1-1.1-2.0-0.8
Rest time, locomotor task time 24.04.69.3-0.9-3.1-1.9
Distance moved, locomotor task time 21.41.63.80.62.00.8
Vertical activity count, locomotor time 20.50.61.2-0.11.1-0.7
Light reinforcement 10.40.81.00.81.00.9
Light reinforcement 20.40.51.21.10.00.5
Bone: marrow area0.00.10.20.30.4-0.1
Bone: maximum diameter0.40.71.4-0.4-1.2-0.8
Bone: maximum force0.91.62.0-1.1-1.3-1.4
Bone: maximum moment1.11.82.9-1.3-1.0-1.7
Mean time between licks in bursts3.75.38.42.12.91.7
Mean num. licks in bursts0.10.10.10.30.2-0.3
Cd content in liver0.10.20.30.30.60.2
Co content in liver1.11.22.9-0.5-1.7-0.8
Cu content in liver0.50.60.9-0.7-1.0-0.7
Fe content in liver1.01.22.00.71.11.4
K content in liver0.80.81.01.00.71.0
Mg content in liver0.80.81.31.20.80.7
Mn content in liver2.42.72.91.71.71.6
Na content in liver5.15.48.5-2.9-1.0-2.6
Rb content in liver0.60.71.10.90.51.0
Se content in liver1.01.22.7-0.11.60.9
Sr content in liver1.41.32.31.01.50.8
Zn content in liver1.82.03.1-1.8-0.4-1.6
Bone: minimum diameter0.40.71.0-0.7-0.7-1.0
Time in familiar zone, hab. session 10.30.30.70.80.30.5
Time in novel zone, hab. session 11.91.82.5-1.4-1.6-1.0
Total zone transitions, hab. session 10.40.61.4-0.5-0.4-1.2
Total locomotion distance, hab. session 10.10.10.20.10.5-0.3
Locomotion velocity, hab. session 10.30.41.00.01.0-0.4
Time in familiar zone, hab. session 20.20.20.30.6-0.10.4
Time in novel zone, hab. session 20.10.10.1-0.20.0-0.4
Total zone transitions, hab. session 20.81.12.3-0.9-0.4-1.5
Total locomotion distance, hab. session 20.10.10.3-0.20.0-0.5
Locomotion velocity, hab. session 20.30.40.9-0.6-0.2-0.9
Novel to familiar place preference ratio0.20.20.30.60.40.3
Novelty place preference0.30.30.30.50.60.4
Time in novel zone, NPP test0.10.10.30.30.50.2
Total zone transitions, NPP test0.20.30.80.10.9-0.4
Total locomotion distance, NPP test2.43.36.61.62.61.0
Locomotion velocity, NPP test2.13.05.61.62.40.9
Intraocular pressure1.72.33.61.51.91.0
Delta distance traveled before/after self-admin0.50.50.9-0.5-1.0-0.7
Delta ambulatory time before/after self-admin0.40.50.8-0.3-0.9-0.7
Parametrial fat weight3.36.49.13.02.32.2
Pavlov. Cond. lever latency0.30.41.01.00.4-0.0
Pavlov. Cond. magazine entry latency0.30.41.0-1.0-0.40.2
Pavlov. Cond. change in total contacts2.52.73.8-2.0-1.4-1.4
Pavlov. Cond. index score1.21.53.4-1.9-0.9-0.6
Pavlov. Cond. latency score0.81.02.5-1.6-0.7-0.3
Pavlov. Cond. lever contacts0.70.82.0-1.4-0.6-0.2
Pavlov. Cond. magazine entry number1.21.52.71.61.10.8
Pavlov. Cond. intertrial magazine entries0.30.30.7-0.10.8-0.5
Pavlov. Cond. lever-magazine prob. diff.1.72.14.2-2.1-1.2-0.8
Pavlov. Cond. response bias1.62.03.6-1.9-1.3-0.7
Pavlov. Cond. lever latency1.82.43.51.90.91.8
Pavlov. Cond. magazine entry latency0.80.92.1-1.5-0.6-0.6
Pavlov. Cond. change in total contacts3.95.47.5-2.7-1.7-2.4
Pavlov. Cond. index score2.12.64.8-2.2-1.0-1.5
Pavlov. Cond. latency score1.82.24.3-2.1-0.7-1.3
Pavlov. Cond. lever contacts1.72.33.6-1.7-0.6-1.9
Pavlov. Cond. magazine entry number0.20.30.70.80.20.3
Pavlov. Cond. intertrial magazine entries8.310.912.93.63.62.6
Pavlov. Cond. lever-magazine prob. diff.2.12.64.6-2.1-1.0-1.5
Pavlov. Cond. response bias1.92.63.9-2.0-0.9-1.8
Time in closed arm before self-admin1.72.03.0-1.7-1.0-1.4
Time in closed arm after self-admin0.20.20.7-0.80.00.2
Time in open arm before self-admin0.40.40.80.90.7-0.3
Time in open arm after self-admin0.40.50.80.90.70.4
Bone: periosteal estimation0.10.20.4-0.1-0.3-0.6
Bone: periosteal perimeter0.00.00.10.10.3-0.2
Bone: post-yield work0.71.02.20.9-1.5-0.1
Progressive ratio test 1 active lever presses0.60.61.30.8-1.1-0.1
Progressive ratio test 1 breakpoint0.60.71.30.8-1.20.1
Progressive ratio test 1 inactive lever presses0.80.91.31.10.90.8
Progressive ratio test 2 active lever presses0.90.92.41.6-0.20.5
Progressive ratio test 2 breakpoint0.50.61.71.3-0.20.3
Progressive ratio test 2 inactive lever presses0.80.91.61.30.51.0
Incentive Sensitization - Responses0.30.30.70.80.50.0
Incentive Sensitization - Breakpoint0.40.40.80.90.60.0
Sum of active levers in priming session hrs 5-60.80.81.41.20.50.8
Progressive ratio2.02.34.4-1.4-0.7-2.1
Food seeking constrained by brief footshock0.60.71.50.6-0.61.2
Seeking ratio, punishment vs. effort1.21.43.41.0-0.11.8
Retroperitoneal fat weight0.62.02.91.70.71.6
Reaction time number correct0.10.20.40.60.40.3
Reaction time mean minus median0.40.51.1-1.1-0.0-0.6
Reaction time mean minus median AUC0.20.30.5-0.70.2-0.5
Reaction time num false alarms0.40.61.0-0.70.4-1.0
Reaction time num false alarms AUC0.60.81.7-0.80.1-1.3
Reaction time trials correct on left0.10.20.40.60.40.3
Reaction time trials on left0.20.30.50.70.50.3
Reaction time mean0.10.10.2-0.40.1-0.3
Reaction time mean AUC0.20.30.5-0.70.0-0.6
Median of all reaction times0.00.00.0-0.10.10.1
Reaction time omissions1.82.54.41.52.10.8
Reaction time false alarm rate0.50.71.1-1.0-0.2-1.0
Reaction time premature initiation rate0.40.51.0-0.7-1.00.2
Reaction time premature initiations0.20.20.6-0.3-0.80.2
Std. dev. reaction times0.10.10.2-0.4-0.0-0.3
Reaction time trials completed0.20.30.50.70.50.3
Reaction time trials AUC0.20.30.60.80.50.3
Run reversals in cocaine runway, females0.70.70.80.80.90.7
Run reversals in cocaine runway, males5.75.57.3-2.0-2.7-2.3
Latency to leave start box in cocaine runway0.10.10.20.4-0.30.1
Latency to leave start box in cocaine runway, F0.40.41.0-0.4-1.0-0.4
Latency to leave start box in cocaine runway, M1.11.11.91.01.40.5
Std. dev. time between licks in bursts3.03.68.01.22.81.2
Total sessions with >9 infusions0.91.01.71.31.00.6
Short access day 1 total inactive lever presses0.30.30.50.7-0.70.1
Short access day 10 total inactive lever presses1.21.32.31.00.81.5
Short access day 1 total infusions1.31.43.21.80.30.9
Short access day 10 total infusions0.30.40.60.2-0.8-0.7
Short access total infusions0.20.20.70.8-0.10.0
Short access day 1 locomotion0.00.00.1-0.10.2-0.3
Short access day 10 total locomotion0.10.10.3-0.40.50.1
Short access total locomotion0.20.20.5-0.20.70.0
One hour access (0.3 mA shock)0.40.51.31.1-0.20.4
Compulsive drug intake0.10.10.20.30.40.3
One hour access (shock baseline)0.40.41.21.1-0.30.2
Social response proportion1.82.03.01.60.61.7
Social responses4.86.27.82.22.42.8
Social time0.40.51.2-0.21.1-0.5
Soleus weight0.30.91.7-0.7-1.3-0.6
Bone: stiffness0.60.91.3-0.9-1.2-0.8
Tibialis anterior weight7.625.927.6-5.3-4.9-5.2
Time to tail flick, vehicle, before self-admin0.40.41.3-1.1-0.20.0
Time to tail flick, vehicle, after self-admin1.21.31.8-1.2-1.3-0.7
Time to tail flick, test, before self-admin0.90.92.5-0.30.4-1.6
Time to tail flick, test, after self-admin4.95.16.22.52.22.0
Delta time to tail flick, vehicle, before/after SA0.20.20.30.4-0.5-0.3
Delta time to tail flick, test, before/after SA4.94.46.52.31.22.5
Tibia length0.61.72.9-1.71.3-0.6
Ambulatory time before self-admin0.10.10.3-0.1-0.3-0.5
Ambulatory time after self-admin1.31.42.3-0.8-1.2-1.5
Bone: tissue strength0.30.30.50.20.6-0.7
Total heroin consumption1.11.31.7-1.1-1.3-1.1
Bone: trabecular number1.32.03.71.31.90.8
Bone: trabecular spacing1.82.33.4-1.5-1.9-1.1
Bone: trabecular thickness0.10.10.2-0.30.2-0.4
Bone: trabecular tissue density1.52.13.0-1.7-1.5-1.1
Water consumed over 24 hours1.51.83.1-1.2-0.9-1.8
Number of responses in last shaping day0.40.41.0-0.6-0.2-1.0