LOC120097012

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC120097012 0.04 0.03 3.1e-06 0.04 0.05 0.03 0.05 5.8e-06 1.1e-06 8.9e-05 4.8e-06
2 pVTA gene expression LOC120097012 0.09 0.06 1.1e-03 0.09 0.08 0.03 0.07 1.4e-04 2.3e-04 1.3e-02 7.0e-04
3 BLA gene expression LOC120097012 0.05 0.04 8.6e-03 0.03 0.03 0.05 0.03 1.2e-02 1.5e-02 1.4e-03 1.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.30.40.2-0.5
Area under the delay curve4.64.88.22.1-2.9-1.3
BMI with tail0.61.93.81.3-1.90.2
BMI without tail0.61.21.7-1.20.61.3
Body weight1.14.76.82.6-2.6-0.9
Weight adjusted by age2.73.03.51.9-1.5-1.9
Bone surface0.20.40.70.8-0.0-0.7
Bone volume0.30.51.11.1-0.4-0.6
Breakpoint value in progressive ratio session1.21.34.0-0.10.02.0
Number of licking bursts0.10.10.2-0.2-0.40.2
Context. condit. distance diff. score1.11.32.3-1.50.41.2
Locomotion velocity, session 10.80.81.11.1-0.7-0.9
Locomotion distance, session 11.62.04.61.1-0.6-2.1
Locomotion velocity, session 21.31.52.31.5-1.2-0.9
Locomotion distance, session 20.81.12.11.1-0.2-1.4
Locomotion velocity, session 30.60.71.20.6-0.7-1.1
Locomotion distance, session 31.21.43.30.4-0.8-1.8
Stereotopy head waving bouts, day 31.01.21.9-1.21.40.6
Stereotopy head waving duration, day 30.00.10.10.10.1-0.4
Locomotion velocity, session 70.20.20.4-0.60.20.5
Locomotion distance, session 71.62.12.6-1.61.21.5
Stereotopy head waving bouts, day 72.12.32.71.6-1.4-1.6
Stereotopy head waving duration, day 72.63.24.21.6-1.7-2.0
Locomotion velocity, session 80.60.70.90.8-0.9-0.8
Locomotion distance, session 80.10.10.2-0.1-0.2-0.4
Degree of sensitization distance6.46.49.4-2.32.23.1
Degree of sensitization stereotypy2.62.83.11.8-1.7-1.5
Conditioned locomotion0.20.20.5-0.30.10.7
Cocaine response after cond. corrected1.31.52.4-1.40.31.6
Cocaine response after cond. not corrected1.01.11.7-1.30.31.3
Cocaine response before conditioning0.80.91.71.0-0.4-1.3
Saline control response0.20.30.8-0.30.90.0
Bone: connectivity density0.40.61.3-0.61.10.1
Bone: cortical apparent density0.40.61.7-1.30.20.1
Bone: cortical area0.50.71.11.0-1.1-0.4
Bone: cortical porosity2.42.63.31.8-1.5-1.4
Bone: cortical porosity1.92.12.61.5-1.2-1.6
Bone: cortical thickness0.50.81.50.8-1.2-0.2
Bone: cortical thickness0.60.71.60.3-1.3-0.7
Bone: cortical tissue density0.50.61.8-1.30.20.2
Condit. Reinf. active minus inactive responses1.01.21.91.4-0.7-1.0
Condit. Reinf. active-inactive response ratio0.20.20.4-0.40.60.1
Condit. Reinf. active responses1.31.62.51.6-1.0-1.2
Condit. Reinf. inactive responses0.91.11.31.1-0.8-1.1
Incentive salience index mean3.03.66.12.5-1.8-1.3
Condit. Reinf. lever presses3.85.18.52.9-2.3-1.2
Condit. Reinf. active minus inactive responses0.10.10.2-0.40.2-0.4
Condit. Reinf. active-inactive response ratio0.20.20.5-0.1-0.1-0.7
Condit. Reinf. active responses0.20.30.7-0.3-0.0-0.8
Condit. Reinf. inactive responses0.30.40.6-0.70.80.4
Condit. Reinf. lever presses2.12.86.21.2-0.9-2.5
Condit. Reinf. lever reinforcers received0.20.31.0-0.1-0.2-1.0
Conditioned reinforcement - actives7.77.78.3-2.82.92.7
Conditioned reinforcement - inactives3.43.95.2-1.71.92.3
Conditioned locomotion4.15.06.2-2.41.72.5
Patch foraging indifference point 0 sec0.50.71.41.2-0.5-0.8
Patch foraging indifference point AUC1.01.12.8-1.70.70.3
Delay disc. indifference point, 0s delay0.50.50.70.7-0.8-0.6
Delay disc. indifference point, 16s delay1.01.12.21.0-1.5-0.1
Delay disc. indifference point, 2s delay1.71.92.61.1-1.3-1.6
Delay disc. indifference point, 24s delay1.81.73.80.9-1.90.7
Delay disc. indifference point, 4s delay4.85.17.52.3-2.7-1.6
Delay disc. indifference point, 8s delay5.55.79.42.3-3.1-1.6
Indifference point function ln k2.12.95.42.3-1.7-0.7
Indifference point function log k2.12.95.42.3-1.7-0.7
Patch foraging total patch changes 0 sec0.81.32.21.5-1.0-1.0
Patch foraging total patch changes 12 sec0.10.10.40.0-0.0-0.6
Patch foraging total patch changes 18 sec0.30.30.9-1.00.3-0.1
Patch foraging total patch changes 24 sec0.80.92.80.1-0.1-1.7
Patch foraging total patch changes 6 sec0.00.00.1-0.3-0.10.0
Patch foraging time to switch 0 sec0.20.40.5-0.40.70.7
Patch foraging water rate 0 sec1.52.43.11.4-1.8-1.4
Patch foraging water rate 12 sec2.84.27.81.5-1.6-2.8
Patch foraging water rate 18 sec7.19.612.12.6-3.2-3.5
Patch foraging water rate 24 sec0.71.01.31.0-1.2-0.8
Patch foraging water rate 6 sec2.03.05.61.3-1.3-2.4
Seeking ratio, delayed vs. immediate footshock0.60.70.80.9-0.60.9
Distance traveled before self-admin0.20.20.50.10.20.7
Distance traveled after self-admin0.40.41.1-0.20.11.1
Extensor digitorum longus weight6.124.131.04.8-5.6-4.3
Bone: elastic displacement0.30.30.6-0.30.8-0.5
Bone: elastic work0.60.81.21.1-0.3-1.1
Bone: endosteal estimation0.10.20.50.7-0.00.1
Bone: endosteal perimeter0.10.10.20.40.40.0
Epididymis fat weight0.10.10.3-0.30.30.5
Delta time in closed arm before/after self-admin0.10.10.10.3-0.40.1
Delta time in open arm before/after self-admin1.81.82.9-1.11.11.7
Diff in mean of infusions in LGA sessions0.91.01.71.3-1.00.3
Delay discount exponential model param5.65.89.6-2.33.11.7
Extinction: sum of active levers before priming1.21.22.8-0.70.51.7
Active lever presses in extinction session 60.90.81.2-0.71.10.9
Bone: final force1.11.82.71.7-1.6-0.4
Bone: final moment1.21.93.01.7-1.5-0.7
Food consumed during 24 hour testing period0.10.10.20.4-0.1-0.5
Glucose0.10.20.40.1-0.5-0.6
Heart weight0.20.30.30.6-0.5-0.5
Delay discount hyperbolic model param5.65.99.1-2.33.01.8
Intermittent access intake day 1-15 change1.91.92.9-0.91.41.7
Intermittent access intake escalation2.82.74.5-1.11.62.1
Intermittent access intake escalation 21.61.61.8-1.11.31.3
Intermitt. access day 1 inactive lever presses2.52.74.5-1.31.42.1
Intermitt. access day 15 inactive lever presses1.21.33.5-0.30.51.9
Intermitt. access escalation Index0.60.61.1-0.60.4-1.0
Intermittent access day 1 total infusions0.60.61.3-1.10.50.6
Intermittent access day 15 total infusions3.74.14.5-2.11.92.1
Intermittent access terminal intake (last 3 days)2.93.24.3-2.11.71.5
Intermittent access total infusions2.93.24.4-1.91.32.1
Intermittent access day 1 locomotion0.10.10.1-0.1-0.40.2
Intermittent access day 15 total locomotion2.42.63.7-1.51.41.9
Intermittent access total locomotion1.11.32.9-0.80.51.7
Intermittent access standard deviation0.80.81.2-0.61.10.9
Left kidney weight2.67.39.13.0-2.6-2.4
Right kidney weight3.08.49.12.9-2.8-3.0
Cocaine induced anxiety1.72.04.41.0-0.7-2.1
Post-drug Anxiety0.80.91.71.3-0.8-0.7
Baseline Anxiety0.80.82.30.4-0.11.5
Tail length0.20.61.1-0.81.00.0
Length with tail0.41.42.51.6-0.8-1.0
Length without tail2.96.410.63.3-2.4-1.6
Times rat made contact with spout0.30.40.60.8-0.6-0.5
Lifetime Intake2.12.42.9-1.71.31.7
Liver weight, left1.93.14.11.6-2.0-1.6
Liver weight, right0.20.30.70.5-0.90.0
Locomotor activity4.77.49.93.1-2.3-2.6
Locomotor testing distance1.42.33.71.9-0.8-1.6
Locomotor testing rearing1.01.62.71.50.2-1.6
Locomotion in novel chamber0.91.21.80.9-1.0-1.3
Locomotion in novel chamber post-restriction1.51.83.31.0-1.1-1.8
Fecal boli incidents, locomotor time 12.83.16.90.5-1.5-2.6
Change in fecal boli incidents, locomotor task0.10.10.20.20.40.4
Time >=10cm from walls, locomotor time 10.10.10.30.50.1-0.2
Bouts of movement, locomotor time 11.61.72.81.4-1.7-0.6
Total resting periods, locomotor time 10.91.02.00.9-1.4-0.4
Rest time, locomotor task time 11.21.42.50.7-1.6-1.1
Distance moved, locomotor task time 11.61.82.9-1.01.71.2
Vertical activity count, locomotor time 10.70.81.9-0.61.40.2
Time >=10cm from walls, locomotor time 20.20.30.50.50.10.7
Bouts of movement, locomotor time 22.12.34.21.6-2.0-0.4
Total resting periods, locomotor time 22.62.84.91.7-2.2-0.7
Rest time, locomotor task time 22.32.63.31.1-1.8-1.8
Distance moved, locomotor task time 21.31.52.3-0.81.31.5
Vertical activity count, locomotor time 21.11.21.5-0.91.21.2
Light reinforcement 10.50.91.20.9-0.8-1.1
Light reinforcement 20.20.30.6-0.80.20.5
Bone: marrow area0.10.20.50.70.10.1
Bone: maximum diameter0.00.10.10.3-0.30.3
Bone: maximum force1.22.03.21.8-1.6-0.6
Bone: maximum moment1.32.23.51.9-1.5-0.9
Mean time between licks in bursts2.43.34.3-1.92.11.4
Mean num. licks in bursts0.10.20.30.60.0-0.5
Cd content in liver0.10.20.2-0.10.50.5
Co content in liver0.91.01.81.1-1.3-0.2
Cu content in liver1.41.72.01.4-1.1-1.3
Fe content in liver0.50.50.8-0.60.90.7
K content in liver0.70.71.4-1.20.60.5
Mg content in liver1.41.51.9-1.41.11.1
Mn content in liver0.91.01.3-1.00.81.2
Na content in liver3.73.95.62.4-1.9-1.6
Rb content in liver3.13.85.0-1.71.82.2
Se content in liver0.60.71.80.40.41.4
Sr content in liver1.21.12.2-1.01.50.3
Zn content in liver2.62.94.32.1-1.5-1.5
Bone: minimum diameter0.40.71.51.2-0.7-0.3
Time in familiar zone, hab. session 10.00.00.0-0.1-0.1-0.0
Time in novel zone, hab. session 10.00.00.00.1-0.1-0.1
Total zone transitions, hab. session 11.82.54.41.2-1.3-2.1
Total locomotion distance, hab. session 10.40.51.30.4-0.4-1.1
Locomotion velocity, hab. session 10.60.81.50.8-0.6-1.2
Time in familiar zone, hab. session 20.70.71.1-0.80.71.1
Time in novel zone, hab. session 20.70.71.70.6-0.4-1.3
Total zone transitions, hab. session 23.03.85.61.7-1.7-2.4
Total locomotion distance, hab. session 22.02.63.81.4-1.4-1.9
Locomotion velocity, hab. session 22.53.44.31.8-1.7-2.1
Novel to familiar place preference ratio0.30.30.4-0.20.60.7
Novelty place preference0.20.20.30.10.50.5
Time in novel zone, NPP test0.20.20.20.20.50.5
Total zone transitions, NPP test1.72.43.81.4-1.3-2.0
Total locomotion distance, NPP test0.20.30.80.20.3-0.9
Locomotion velocity, NPP test0.20.31.00.10.2-1.0
Intraocular pressure2.73.87.0-2.02.70.8
Delta distance traveled before/after self-admin0.00.00.1-0.1-0.00.3
Delta ambulatory time before/after self-admin0.10.10.1-0.30.20.3
Parametrial fat weight3.05.96.1-2.52.42.4
Pavlov. Cond. lever latency1.82.33.6-1.91.70.5
Pavlov. Cond. magazine entry latency0.70.91.71.3-0.80.6
Pavlov. Cond. change in total contacts3.23.46.42.5-1.9-0.3
Pavlov. Cond. index score3.74.77.62.8-2.4-0.6
Pavlov. Cond. latency score3.03.96.52.5-2.2-0.6
Pavlov. Cond. lever contacts3.03.55.92.4-2.1-0.4
Pavlov. Cond. magazine entry number1.62.03.7-1.91.50.2
Pavlov. Cond. intertrial magazine entries0.60.81.70.6-0.6-1.3
Pavlov. Cond. lever-magazine prob. diff.4.25.28.32.9-2.6-0.7
Pavlov. Cond. response bias2.83.45.42.3-2.2-0.4
Pavlov. Cond. lever latency3.24.36.7-1.81.62.6
Pavlov. Cond. magazine entry latency1.71.93.01.7-1.5-0.6
Pavlov. Cond. change in total contacts3.04.26.31.7-1.8-2.5
Pavlov. Cond. index score3.03.84.32.0-1.8-2.1
Pavlov. Cond. latency score2.83.53.81.9-1.7-1.9
Pavlov. Cond. lever contacts3.04.17.71.7-1.3-2.8
Pavlov. Cond. magazine entry number1.31.51.9-1.31.41.0
Pavlov. Cond. intertrial magazine entries3.03.96.7-2.12.60.7
Pavlov. Cond. lever-magazine prob. diff.2.63.33.61.9-1.8-1.8
Pavlov. Cond. response bias3.34.46.02.0-1.8-2.5
Time in closed arm before self-admin2.52.83.51.9-1.8-1.3
Time in closed arm after self-admin5.45.56.42.5-2.5-2.0
Time in open arm before self-admin0.80.92.2-0.30.6-1.5
Time in open arm after self-admin2.22.52.9-1.61.71.4
Bone: periosteal estimation0.10.20.50.7-0.30.2
Bone: periosteal perimeter0.10.20.40.6-0.2-0.2
Bone: post-yield work0.10.20.3-0.6-0.3-0.2
Progressive ratio test 1 active lever presses0.40.50.9-1.00.30.6
Progressive ratio test 1 breakpoint0.30.30.8-0.90.20.3
Progressive ratio test 1 inactive lever presses1.41.62.6-1.61.4-0.4
Progressive ratio test 2 active lever presses5.05.46.2-2.52.02.4
Progressive ratio test 2 breakpoint3.33.74.3-2.11.72.0
Progressive ratio test 2 inactive lever presses2.22.53.7-1.91.61.1
Incentive Sensitization - Responses5.25.35.7-2.22.22.4
Incentive Sensitization - Breakpoint4.64.74.9-2.12.22.2
Sum of active levers in priming session hrs 5-60.80.81.3-1.10.80.7
Progressive ratio0.40.51.30.20.0-1.1
Food seeking constrained by brief footshock2.42.95.5-1.60.92.3
Seeking ratio, punishment vs. effort0.91.13.0-0.7-0.11.7
Retroperitoneal fat weight0.31.11.5-1.20.81.2
Reaction time number correct0.10.10.3-0.10.5-0.1
Reaction time mean minus median0.00.00.10.3-0.1-0.2
Reaction time mean minus median AUC0.00.00.00.00.00.2
Reaction time num false alarms0.60.92.21.5-0.60.2
Reaction time num false alarms AUC0.60.92.01.4-0.80.2
Reaction time trials correct on left0.10.10.3-0.10.5-0.1
Reaction time trials on left0.10.10.4-0.20.60.0
Reaction time mean0.50.70.9-0.80.91.0
Reaction time mean AUC0.40.61.0-0.50.71.0
Median of all reaction times0.81.11.3-1.01.11.1
Reaction time omissions2.93.95.0-1.92.21.8
Reaction time false alarm rate0.71.01.81.3-1.00.1
Reaction time premature initiation rate0.00.00.10.2-0.30.0
Reaction time premature initiations0.00.00.10.10.10.3
Std. dev. reaction times0.30.40.4-0.60.60.6
Reaction time trials completed0.10.10.4-0.20.60.0
Reaction time trials AUC0.10.20.5-0.20.7-0.1
Run reversals in cocaine runway, females0.90.91.5-0.50.91.2
Run reversals in cocaine runway, males1.41.41.61.3-1.2-1.1
Latency to leave start box in cocaine runway0.30.30.4-0.30.6-0.6
Latency to leave start box in cocaine runway, F0.20.20.4-0.20.60.3
Latency to leave start box in cocaine runway, M0.80.81.8-0.50.6-1.3
Std. dev. time between licks in bursts1.31.62.4-0.91.51.3
Total sessions with >9 infusions1.82.02.2-1.51.31.4
Short access day 1 total inactive lever presses0.20.30.4-0.60.6-0.3
Short access day 10 total inactive lever presses0.50.61.3-1.10.70.4
Short access day 1 total infusions1.92.03.2-1.81.41.0
Short access day 10 total infusions0.00.00.0-0.2-0.1-0.1
Short access total infusions0.30.30.6-0.70.50.2
Short access day 1 locomotion0.00.00.1-0.20.10.3
Short access day 10 total locomotion0.30.30.50.7-0.6-0.0
Short access total locomotion0.10.10.20.3-0.2-0.4
One hour access (0.3 mA shock)2.63.15.0-1.51.32.2
Compulsive drug intake0.40.40.50.5-0.6-0.7
One hour access (shock baseline)3.94.66.5-2.01.82.5
Social response proportion3.03.23.7-1.61.91.8
Social responses1.82.33.1-1.11.81.6
Social time0.30.40.60.8-0.4-0.7
Soleus weight0.10.20.70.1-0.8-0.1
Bone: stiffness1.11.72.81.5-1.70.1
Tibialis anterior weight7.023.928.54.7-5.3-4.6
Time to tail flick, vehicle, before self-admin0.70.81.50.8-0.41.2
Time to tail flick, vehicle, after self-admin0.10.20.30.4-0.20.5
Time to tail flick, test, before self-admin0.00.00.00.20.1-0.1
Time to tail flick, test, after self-admin3.03.14.3-1.92.11.2
Delta time to tail flick, vehicle, before/after SA0.10.10.1-0.30.40.2
Delta time to tail flick, test, before/after SA2.21.92.6-1.61.60.8
Tibia length1.64.48.52.9-1.7-1.4
Ambulatory time before self-admin0.20.20.30.6-0.6-0.3
Ambulatory time after self-admin0.30.30.50.5-0.7-0.2
Bone: tissue strength0.90.91.9-0.71.40.6
Total heroin consumption0.00.00.00.1-0.0-0.2
Bone: trabecular number0.10.10.3-0.10.5-0.1
Bone: trabecular spacing0.10.20.3-0.0-0.60.4
Bone: trabecular thickness2.32.73.21.8-1.6-1.5
Bone: trabecular tissue density0.50.71.30.6-1.1-0.6
Water consumed over 24 hours1.01.22.01.4-1.1-0.5
Number of responses in last shaping day0.20.20.3-0.30.4-0.5