LOC120097012

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression LOC120097012 0.07 0.05 1.5e-03 0.01 0.04 0.02 0.03 5.4e-02 4.7e-03 2.5e-02 8.1e-03
2 pVTA gene expression LOC120097012 0.07 0.04 9.0e-07 0.08 0.08 0.08 0.08 2.9e-07 3.4e-07 4.4e-07 8.9e-07
3 NAcc gene expression LOC120097012 0.08 0.05 1.4e-07 0.02 0.04 0.04 0.02 7.5e-04 4.8e-06 1.3e-06 1.9e-04
4 Brain gene expression LOC120097012 0.04 0.03 5.3e-03 0.03 0.02 0.01 0.02 1.3e-03 7.7e-03 8.4e-02 8.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.20.40.60.5-0.10.6
Area under the delay curve3.55.36.71.7-2.6-2.4-2.4
BMI with tail0.72.65.41.2-1.8-0.4-2.3
BMI without tail0.10.51.5-0.40.31.2-0.4
Body weight1.66.98.52.8-2.7-2.0-2.9
Weight adjusted by age1.03.14.12.0-1.7-1.5-1.7
Bone surface0.20.40.80.90.4-0.70.3
Bone volume0.30.61.21.1-0.1-1.1-0.2
Breakpoint value in progressive ratio session0.30.61.10.5-0.3-1.1-0.9
Number of licking bursts0.00.10.3-0.5-0.10.5-0.3
Context. condit. distance diff. score1.82.13.8-1.90.61.90.8
Locomotion velocity, session 11.11.22.21.3-0.8-1.5-0.7
Locomotion distance, session 10.91.22.61.4-0.2-1.6-0.3
Locomotion velocity, session 21.21.52.31.5-1.0-1.3-1.0
Locomotion distance, session 20.71.02.51.60.1-1.2-0.3
Locomotion velocity, session 30.30.30.60.8-0.40.1-0.6
Locomotion distance, session 30.20.20.30.4-0.5-0.2-0.5
Stereotopy head waving bouts, day 31.11.41.7-1.01.31.11.2
Stereotopy head waving duration, day 30.10.10.3-0.10.50.10.4
Locomotion velocity, session 70.80.82.5-0.80.31.60.3
Locomotion distance, session 71.92.53.2-1.71.51.81.2
Stereotopy head waving bouts, day 71.41.72.41.6-1.3-1.1-1.1
Stereotopy head waving duration, day 71.51.82.51.5-1.6-0.9-1.2
Locomotion velocity, session 80.40.40.60.7-0.8-0.6-0.6
Locomotion distance, session 80.00.10.2-0.10.20.40.1
Degree of sensitization distance4.44.75.6-2.42.22.21.9
Degree of sensitization stereotypy2.32.63.31.6-1.8-1.5-1.5
Conditioned locomotion0.30.30.9-0.90.10.50.3
Cocaine response after cond. corrected1.11.64.5-2.10.31.30.2
Cocaine response after cond. not corrected0.91.33.6-1.90.31.10.2
Cocaine response before conditioning0.70.81.91.4-0.4-1.0-0.6
Saline control response0.30.50.80.30.9-0.90.5
Bone: connectivity density0.91.52.3-0.31.51.21.4
Bone: cortical apparent density0.50.71.6-1.30.11.10.1
Bone: cortical area0.91.41.80.8-1.3-1.2-1.3
Bone: cortical porosity2.42.63.91.6-1.5-2.0-1.3
Bone: cortical porosity2.42.64.91.7-1.3-2.2-1.1
Bone: cortical thickness0.81.42.40.6-1.5-0.8-1.5
Bone: cortical thickness0.60.82.0-0.2-1.4-0.1-1.0
Bone: cortical tissue density0.50.81.9-1.40.21.20.2
Condit. Reinf. active minus inactive responses1.11.22.71.6-0.7-1.1-0.7
Condit. Reinf. active-inactive response ratio0.20.20.4-0.30.50.40.6
Condit. Reinf. active responses1.41.83.31.8-0.9-1.3-1.1
Condit. Reinf. inactive responses1.01.31.71.3-0.8-1.3-1.0
Incentive salience index mean3.64.66.92.6-2.0-1.9-2.1
Condit. Reinf. lever presses4.87.28.73.0-2.7-2.2-2.8
Condit. Reinf. active minus inactive responses0.30.50.6-0.70.60.60.8
Condit. Reinf. active-inactive response ratio0.20.30.7-0.30.20.90.5
Condit. Reinf. active responses0.20.30.4-0.50.60.40.6
Condit. Reinf. inactive responses0.30.40.9-0.60.90.10.8
Condit. Reinf. lever presses0.50.72.11.4-0.4-0.7-0.3
Condit. Reinf. lever reinforcers received0.10.10.2-0.30.40.20.4
Conditioned reinforcement - actives1.24.65.8-2.42.01.92.3
Conditioned reinforcement - inactives1.02.84.4-1.42.11.61.5
Conditioned locomotion2.53.77.2-2.71.51.81.4
Patch foraging indifference point 0 sec0.30.91.71.3-0.6-1.2-0.3
Patch foraging indifference point AUC0.92.33.6-1.91.21.80.9
Delay disc. indifference point, 0s delay0.50.61.50.6-0.6-1.2-0.0
Delay disc. indifference point, 16s delay1.21.72.80.6-1.2-1.5-1.7
Delay disc. indifference point, 2s delay1.21.31.91.0-1.3-1.4-0.8
Delay disc. indifference point, 24s delay0.91.53.60.4-1.2-0.7-1.9
Delay disc. indifference point, 4s delay4.85.16.62.0-2.6-2.3-2.1
Delay disc. indifference point, 8s delay3.25.36.91.7-2.6-2.2-2.5
Indifference point function ln k1.33.94.82.1-1.9-2.2-1.6
Indifference point function log k1.33.94.82.1-1.9-2.2-1.6
Patch foraging total patch changes 0 sec0.51.62.51.5-1.0-1.6-0.7
Patch foraging total patch changes 12 sec0.00.00.10.30.1-0.10.0
Patch foraging total patch changes 18 sec0.30.71.2-1.10.60.60.8
Patch foraging total patch changes 24 sec0.00.20.50.20.2-0.70.2
Patch foraging total patch changes 6 sec0.10.20.5-0.40.30.70.1
Patch foraging time to switch 0 sec0.00.10.2-0.20.40.3-0.0
Patch foraging water rate 0 sec0.31.31.61.1-1.2-1.3-0.8
Patch foraging water rate 12 sec0.52.04.01.5-1.1-2.0-0.9
Patch foraging water rate 18 sec1.94.25.62.0-2.4-2.2-1.6
Patch foraging water rate 24 sec0.50.81.20.9-0.9-1.1-0.6
Patch foraging water rate 6 sec1.21.74.01.2-1.1-2.0-0.7
Seeking ratio, delayed vs. immediate footshock0.50.70.90.7-0.9-0.9-0.7
Distance traveled before self-admin0.00.10.30.20.1-0.50.2
Distance traveled after self-admin0.40.81.40.4-0.7-1.2-1.0
Extensor digitorum longus weight6.224.731.04.2-5.6-4.5-5.4
Bone: elastic displacement0.60.81.3-0.11.1-0.91.1
Bone: elastic work1.21.54.51.3-0.2-2.1-0.0
Bone: endosteal estimation0.10.30.70.80.0-0.80.1
Bone: endosteal perimeter0.10.30.40.50.5-0.60.7
Epididymis fat weight0.00.20.6-0.20.2-0.8-0.0
Delta time in closed arm before/after self-admin0.20.20.60.3-0.80.1-0.4
Delta time in open arm before/after self-admin0.30.30.5-0.60.70.60.3
Diff in mean of infusions in LGA sessions1.62.83.61.9-1.5-1.8-1.5
Delay discount exponential model param4.76.38.3-1.92.92.52.7
Extinction: sum of active levers before priming0.00.10.2-0.00.1-0.4-0.2
Active lever presses in extinction session 60.10.10.2-0.40.20.1-0.1
Bone: final force1.82.94.31.6-2.1-1.5-1.5
Bone: final moment1.82.93.41.8-1.9-1.8-1.3
Food consumed during 24 hour testing period0.10.20.40.60.1-0.60.1
Glucose0.00.00.0-0.1-0.1-0.10.0
Heart weight0.20.30.3-0.50.50.50.5
Delay discount hyperbolic model param4.35.57.1-1.82.72.42.4
Intermittent access intake day 1-15 change0.42.33.3-1.51.61.81.0
Intermittent access intake escalation0.31.63.0-1.21.21.70.7
Intermittent access intake escalation 20.91.52.8-1.31.11.70.6
Intermitt. access day 1 inactive lever presses0.11.12.7-0.80.91.60.5
Intermitt. access day 15 inactive lever presses0.10.41.1-0.10.61.1-0.3
Intermitt. access escalation Index0.10.20.60.3-0.8-0.3-0.3
Intermittent access day 1 total infusions0.30.81.5-1.20.90.40.8
Intermittent access day 15 total infusions1.23.04.0-2.01.61.91.3
Intermittent access terminal intake (last 3 days)2.23.95.2-2.31.82.21.5
Intermittent access total infusions2.93.55.4-2.31.62.01.4
Intermittent access day 1 locomotion0.00.10.1-0.3-0.3-0.2-0.4
Intermittent access day 15 total locomotion0.62.43.7-1.91.51.41.3
Intermittent access total locomotion0.70.91.7-1.30.61.00.5
Intermittent access standard deviation0.21.02.0-0.91.40.51.0
Left kidney weight0.64.47.12.7-2.1-1.4-2.1
Right kidney weight1.17.912.03.5-2.7-2.1-2.8
Cocaine induced anxiety1.13.03.41.8-1.8-1.8-1.6
Post-drug Anxiety1.82.03.01.7-1.3-1.5-1.1
Baseline Anxiety0.10.20.5-0.20.70.40.6
Tail length0.10.40.80.40.9-0.00.8
Length with tail0.52.44.72.2-0.9-1.9-0.8
Length without tail1.68.310.03.2-2.8-3.1-2.4
Times rat made contact with spout0.20.30.80.9-0.5-0.1-0.3
Lifetime Intake2.53.14.7-2.21.51.81.4
Liver weight, left1.22.23.11.7-1.3-1.8-1.1
Liver weight, right0.30.50.80.3-0.8-0.9-0.7
Locomotor activity4.97.710.43.2-2.3-3.2-2.2
Locomotor testing distance1.12.75.72.2-0.6-2.4-0.4
Locomotor testing rearing0.72.66.12.50.1-2.10.3
Locomotion in novel chamber0.40.61.00.9-0.5-0.5-1.0
Locomotion in novel chamber post-restriction0.30.81.11.0-0.9-0.9-0.7
Fecal boli incidents, locomotor time 10.10.40.80.4-0.9-0.70.0
Change in fecal boli incidents, locomotor task0.00.00.10.2-0.00.20.3
Time >=10cm from walls, locomotor time 10.20.30.90.90.2-0.60.1
Bouts of movement, locomotor time 10.91.21.71.2-1.3-1.0-0.8
Total resting periods, locomotor time 10.40.51.00.5-1.0-0.4-0.6
Rest time, locomotor task time 10.40.61.50.2-0.90.5-1.2
Distance moved, locomotor task time 10.20.71.2-0.61.0-0.01.1
Vertical activity count, locomotor time 10.10.71.2-0.10.9-1.10.9
Time >=10cm from walls, locomotor time 20.00.10.30.5-0.2-0.30.3
Bouts of movement, locomotor time 20.51.83.41.1-1.8-1.1-1.2
Total resting periods, locomotor time 20.52.14.01.2-2.0-1.1-1.4
Rest time, locomotor task time 20.81.32.40.8-1.5-0.4-1.5
Distance moved, locomotor task time 20.40.61.1-0.51.1-0.30.9
Vertical activity count, locomotor time 20.30.81.2-0.81.1-0.70.9
Light reinforcement 10.10.71.21.1-0.7-0.8-0.6
Light reinforcement 20.20.51.0-1.00.20.80.6
Bone: marrow area0.10.30.60.80.1-0.80.1
Bone: maximum diameter0.20.40.70.2-0.6-0.8-0.6
Bone: maximum force1.93.74.51.8-2.0-2.1-1.8
Bone: maximum moment2.03.85.61.9-1.8-2.4-1.6
Mean time between licks in bursts0.42.73.6-1.31.71.51.9
Mean num. licks in bursts0.10.30.90.9-0.1-0.60.2
Cd content in liver1.11.22.91.7-0.4-1.30.2
Co content in liver1.72.02.41.1-1.6-1.4-1.5
Cu content in liver1.72.03.01.7-1.6-0.9-1.4
Fe content in liver1.11.32.4-0.71.40.71.6
K content in liver1.01.01.7-1.20.71.30.6
Mg content in liver1.61.72.3-1.11.31.31.5
Mn content in liver0.50.60.9-0.80.90.40.7
Na content in liver3.33.84.52.1-1.8-1.7-2.0
Rb content in liver1.51.72.7-0.91.41.21.6
Se content in liver0.20.20.70.40.3-0.80.1
Sr content in liver0.70.61.1-0.21.10.90.8
Zn content in liver0.20.20.40.30.5-0.00.7
Bone: minimum diameter0.71.32.01.2-0.9-1.4-0.9
Time in familiar zone, hab. session 10.00.00.1-0.3-0.2-0.1-0.2
Time in novel zone, hab. session 10.00.00.00.1-0.10.0-0.0
Total zone transitions, hab. session 11.01.32.41.1-1.1-1.5-0.9
Total locomotion distance, hab. session 10.10.20.60.4-0.1-0.7-0.1
Locomotion velocity, hab. session 10.50.71.81.0-0.3-1.3-0.4
Time in familiar zone, hab. session 20.30.30.8-0.90.40.30.5
Time in novel zone, hab. session 20.20.20.60.8-0.2-0.3-0.2
Total zone transitions, hab. session 22.02.63.21.8-1.4-1.7-1.5
Total locomotion distance, hab. session 21.41.82.11.4-1.1-1.4-1.4
Locomotion velocity, hab. session 21.92.62.91.7-1.3-1.7-1.7
Novel to familiar place preference ratio0.10.20.3-0.10.50.50.4
Novelty place preference0.10.10.10.30.30.40.1
Time in novel zone, NPP test0.10.10.20.40.30.30.1
Total zone transitions, NPP test1.01.52.11.4-1.1-1.2-1.2
Total locomotion distance, NPP test0.10.10.20.50.4-0.00.2
Locomotion velocity, NPP test0.10.10.20.40.40.00.2
Intraocular pressure3.86.213.1-1.52.81.33.6
Delta distance traveled before/after self-admin0.30.30.60.2-0.6-0.5-0.8
Delta ambulatory time before/after self-admin0.10.10.2-0.1-0.3-0.4-0.4
Parametrial fat weight0.61.52.5-1.11.40.51.6
Pavlov. Cond. lever latency3.03.85.3-1.82.31.32.2
Pavlov. Cond. magazine entry latency0.81.01.41.0-1.2-0.5-1.0
Pavlov. Cond. change in total contacts4.95.36.22.4-2.5-2.1-2.2
Pavlov. Cond. index score5.36.79.02.5-3.0-1.7-2.9
Pavlov. Cond. latency score4.45.67.72.3-2.8-1.5-2.7
Pavlov. Cond. lever contacts3.94.76.52.1-2.5-1.3-2.5
Pavlov. Cond. magazine entry number2.73.54.3-1.92.11.32.0
Pavlov. Cond. intertrial magazine entries0.20.30.50.6-0.3-0.7-0.2
Pavlov. Cond. lever-magazine prob. diff.5.77.19.72.5-3.1-1.7-3.0
Pavlov. Cond. response bias3.34.15.91.8-2.4-1.3-2.3
Pavlov. Cond. lever latency1.11.63.5-1.90.91.20.8
Pavlov. Cond. magazine entry latency1.52.12.71.5-1.5-1.6-1.2
Pavlov. Cond. change in total contacts0.81.82.61.6-1.2-1.4-1.2
Pavlov. Cond. index score1.52.43.41.9-1.4-1.6-1.2
Pavlov. Cond. latency score1.52.43.51.9-1.4-1.6-1.3
Pavlov. Cond. lever contacts1.21.83.92.0-0.9-1.3-0.9
Pavlov. Cond. magazine entry number0.81.01.5-1.01.01.20.7
Pavlov. Cond. intertrial magazine entries2.24.97.5-1.42.61.82.7
Pavlov. Cond. lever-magazine prob. diff.1.52.32.91.7-1.5-1.5-1.3
Pavlov. Cond. response bias1.92.64.32.1-1.4-1.7-1.1
Time in closed arm before self-admin0.71.22.41.0-1.5-0.3-1.2
Time in closed arm after self-admin2.73.16.31.6-2.5-1.1-1.5
Time in open arm before self-admin0.30.40.70.20.6-0.70.9
Time in open arm after self-admin0.80.91.8-0.61.30.80.8
Bone: periosteal estimation0.30.61.10.8-0.6-1.1-0.5
Bone: periosteal perimeter0.20.40.70.7-0.5-0.9-0.2
Bone: post-yield work0.30.51.6-1.3-0.30.3-0.3
Progressive ratio test 1 active lever presses0.61.11.5-1.20.91.20.8
Progressive ratio test 1 breakpoint0.50.91.3-1.20.81.00.6
Progressive ratio test 1 inactive lever presses0.71.82.6-1.11.61.51.0
Progressive ratio test 2 active lever presses1.72.44.7-1.41.22.21.1
Progressive ratio test 2 breakpoint1.41.83.9-1.21.12.00.9
Progressive ratio test 2 inactive lever presses1.23.86.9-1.81.72.61.4
Incentive Sensitization - Responses0.61.63.1-0.81.11.81.3
Incentive Sensitization - Breakpoint0.61.42.8-0.61.01.71.2
Sum of active levers in priming session hrs 5-60.20.20.5-0.60.70.10.2
Progressive ratio0.10.30.50.4-0.3-0.7-0.6
Food seeking constrained by brief footshock1.82.33.9-2.01.12.00.1
Seeking ratio, punishment vs. effort0.30.71.5-1.00.31.20.2
Retroperitoneal fat weight0.00.10.10.4-0.2-0.3-0.1
Reaction time number correct0.10.20.70.10.5-0.10.9
Reaction time mean minus median0.00.10.20.50.1-0.0-0.3
Reaction time mean minus median AUC0.00.10.20.20.30.40.1
Reaction time num false alarms0.91.62.81.7-1.1-0.9-1.2
Reaction time num false alarms AUC0.61.52.51.6-1.2-0.8-1.1
Reaction time trials correct on left0.10.20.70.10.5-0.10.9
Reaction time trials on left0.10.30.90.00.60.11.0
Reaction time mean0.30.81.3-0.70.91.20.7
Reaction time mean AUC0.20.40.8-0.50.70.90.5
Median of all reaction times0.61.01.6-0.91.01.30.9
Reaction time omissions2.94.76.7-1.72.22.62.1
Reaction time false alarm rate1.21.72.71.3-1.4-0.6-1.6
Reaction time premature initiation rate0.10.10.30.3-0.0-0.1-0.6
Reaction time premature initiations0.00.00.10.10.30.10.1
Std. dev. reaction times0.20.51.2-0.50.71.10.5
Reaction time trials completed0.10.30.90.00.60.11.0
Reaction time trials AUC0.10.41.10.10.60.01.0
Run reversals in cocaine runway, females0.20.20.7-0.40.80.10.0
Run reversals in cocaine runway, males1.81.93.11.3-1.2-1.8-1.3
Latency to leave start box in cocaine runway0.71.03.2-0.50.70.21.8
Latency to leave start box in cocaine runway, F0.40.51.5-0.30.50.41.2
Latency to leave start box in cocaine runway, M0.40.41.2-0.10.4-0.21.1
Std. dev. time between licks in bursts0.61.22.0-0.81.40.71.3
Total sessions with >9 infusions0.60.81.2-1.10.41.10.8
Short access day 1 total inactive lever presses0.00.00.10.00.1-0.30.1
Short access day 10 total inactive lever presses0.00.30.4-0.60.60.50.7
Short access day 1 total infusions0.91.92.8-1.71.01.21.5
Short access day 10 total infusions0.10.10.4-0.20.0-0.60.1
Short access total infusions0.40.51.0-1.00.50.30.9
Short access day 1 locomotion0.00.10.2-0.1-0.4-0.3-0.2
Short access day 10 total locomotion0.00.20.50.2-0.7-0.2-0.3
Short access total locomotion0.10.10.30.1-0.6-0.2-0.4
One hour access (0.3 mA shock)1.72.03.4-1.71.81.20.6
Compulsive drug intake0.30.40.80.9-0.1-0.6-0.7
One hour access (shock baseline)1.02.53.7-1.91.61.41.3
Social response proportion1.92.43.4-1.31.41.81.5
Social responses1.21.62.9-0.81.40.91.7
Social time0.30.51.81.4-0.1-0.0-0.3
Soleus weight0.10.40.8-0.4-0.9-0.3-0.7
Bone: stiffness1.73.04.91.4-2.2-1.0-2.0
Tibialis anterior weight6.723.028.44.3-5.1-4.4-5.3
Time to tail flick, vehicle, before self-admin0.40.51.50.6-0.1-0.3-1.2
Time to tail flick, vehicle, after self-admin0.10.30.70.4-0.4-0.1-0.9
Time to tail flick, test, before self-admin0.00.00.10.40.20.0-0.1
Time to tail flick, test, after self-admin3.73.95.2-1.72.32.01.9
Delta time to tail flick, vehicle, before/after SA0.10.10.3-0.30.10.50.4
Delta time to tail flick, test, before/after SA2.53.13.8-1.71.72.01.7
Tibia length2.15.812.53.5-1.7-2.2-1.7
Ambulatory time before self-admin0.10.30.80.5-0.2-0.9-0.1
Ambulatory time after self-admin1.11.83.20.9-1.2-1.8-1.3
Bone: tissue strength0.70.71.5-0.31.1-0.11.2
Total heroin consumption0.20.20.70.3-0.2-0.9-0.3
Bone: trabecular number0.20.40.70.30.80.50.8
Bone: trabecular spacing0.60.92.0-0.4-1.1-0.6-1.4
Bone: trabecular thickness1.72.33.21.8-1.4-1.6-1.2
Bone: trabecular tissue density0.81.52.50.5-1.6-1.0-1.4
Water consumed over 24 hours0.71.42.01.4-1.0-1.2-1.0
Number of responses in last shaping day0.20.20.4-0.2-0.2-0.6-0.7