LOC120096980

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability LOC120096980 0.06 0.05 1.0e-06 0.04 0.04 0.04 0.04 2.1e-05 1.1e-05 3.9e-05 1.2e-05
2 Brain mRNA stability LOC120096980 0.02 0.02 5.2e-03 0 0.01 0 0 9.7e-02 3.8e-02 1.8e-01 1.4e-01
3 Adipose gene expression LOC120096980 0.05 0.04 6.3e-05 0.02 0.02 0.01 0.02 3.6e-03 1.2e-03 2.1e-02 3.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.91.40.80.9-1.2
Area under the delay curve0.50.61.01.00.8-0.4
BMI with tail0.10.20.5-0.3-0.40.7
BMI without tail0.30.91.31.11.0-0.7
Body weight3.013.113.43.53.7-3.6
Weight adjusted by age0.00.00.0-0.10.0-0.0
Bone surface1.52.83.01.71.7-1.6
Bone volume1.52.72.81.61.7-1.7
Breakpoint value in progressive ratio session1.61.92.51.61.4-1.1
Number of licking bursts3.04.95.9-2.1-2.12.4
Context. condit. distance diff. score0.00.00.10.20.10.3
Locomotion velocity, session 10.40.50.7-0.8-0.80.4
Locomotion distance, session 10.50.60.80.90.9-0.6
Locomotion velocity, session 20.50.60.7-0.8-0.80.7
Locomotion distance, session 21.31.82.5-1.2-1.21.6
Locomotion velocity, session 30.30.30.4-0.6-0.60.6
Locomotion distance, session 33.23.54.62.12.0-1.3
Stereotopy head waving bouts, day 30.60.71.1-1.1-1.00.3
Stereotopy head waving duration, day 31.51.82.5-1.6-1.50.8
Locomotion velocity, session 70.40.40.60.80.7-0.4
Locomotion distance, session 70.20.30.30.50.5-0.5
Stereotopy head waving bouts, day 71.92.22.7-1.3-1.41.7
Stereotopy head waving duration, day 72.53.03.1-1.7-1.71.8
Locomotion velocity, session 83.74.55.6-1.9-2.02.4
Locomotion distance, session 80.71.01.9-0.6-0.71.4
Degree of sensitization distance0.50.50.8-0.9-0.80.3
Degree of sensitization stereotypy1.51.62.5-1.0-1.11.6
Conditioned locomotion0.40.50.7-0.6-0.70.9
Cocaine response after cond. corrected0.10.10.2-0.4-0.4-0.2
Cocaine response after cond. not corrected0.10.10.2-0.4-0.3-0.4
Cocaine response before conditioning1.41.61.81.21.3-1.3
Saline control response0.10.10.1-0.3-0.30.1
Bone: connectivity density0.20.40.40.60.6-0.6
Bone: cortical apparent density1.52.12.1-1.4-1.41.4
Bone: cortical area1.72.63.01.51.6-1.7
Bone: cortical porosity1.01.12.0-0.8-0.91.4
Bone: cortical porosity1.71.83.0-1.0-1.11.7
Bone: cortical thickness0.61.01.40.80.9-1.2
Bone: cortical thickness0.60.70.9-1.0-0.90.7
Bone: cortical tissue density1.82.42.5-1.5-1.51.6
Condit. Reinf. active minus inactive responses0.20.20.2-0.4-0.50.5
Condit. Reinf. active-inactive response ratio0.20.20.3-0.6-0.50.1
Condit. Reinf. active responses2.02.53.0-1.5-1.61.7
Condit. Reinf. inactive responses2.12.63.9-1.3-1.52.0
Incentive salience index mean0.10.20.3-0.3-0.40.5
Condit. Reinf. lever presses0.00.00.10.20.10.2
Condit. Reinf. active minus inactive responses1.41.92.01.41.3-1.3
Condit. Reinf. active-inactive response ratio0.00.10.1-0.3-0.30.2
Condit. Reinf. active responses3.75.25.62.42.3-2.1
Condit. Reinf. inactive responses4.55.86.92.62.5-2.0
Condit. Reinf. lever presses8.111.211.43.43.3-3.3
Condit. Reinf. lever reinforcers received4.15.76.42.52.5-2.2
Conditioned reinforcement - actives0.61.01.2-1.1-1.10.8
Conditioned reinforcement - inactives0.20.30.50.70.50.3
Conditioned locomotion2.33.03.1-1.7-1.71.7
Patch foraging indifference point 0 sec0.10.10.20.40.4-0.3
Patch foraging indifference point AUC0.71.01.1-1.0-1.01.0
Delay disc. indifference point, 0s delay0.40.40.80.90.70.0
Delay disc. indifference point, 16s delay1.11.21.81.41.1-0.6
Delay disc. indifference point, 2s delay1.01.11.61.21.2-0.7
Delay disc. indifference point, 24s delay2.22.43.01.71.7-1.2
Delay disc. indifference point, 4s delay0.00.00.10.20.00.3
Delay disc. indifference point, 8s delay0.10.20.20.50.4-0.3
Indifference point function ln k0.30.50.60.80.7-0.7
Indifference point function log k0.30.50.60.80.7-0.7
Patch foraging total patch changes 0 sec0.10.20.30.50.5-0.4
Patch foraging total patch changes 12 sec0.00.00.0-0.0-0.1-0.1
Patch foraging total patch changes 18 sec0.10.20.3-0.3-0.30.5
Patch foraging total patch changes 24 sec0.40.60.80.90.9-0.6
Patch foraging total patch changes 6 sec0.00.00.0-0.1-0.0-0.0
Patch foraging time to switch 0 sec0.30.70.8-0.9-0.90.6
Patch foraging water rate 0 sec0.51.01.1-1.0-0.91.0
Patch foraging water rate 12 sec0.20.50.70.70.8-0.5
Patch foraging water rate 18 sec0.10.20.2-0.5-0.40.4
Patch foraging water rate 24 sec0.10.20.40.20.10.6
Patch foraging water rate 6 sec0.81.11.51.21.2-0.7
Seeking ratio, delayed vs. immediate footshock1.21.52.11.51.4-0.8
Distance traveled before self-admin0.20.30.50.70.5-0.4
Distance traveled after self-admin2.43.03.01.71.7-1.7
Extensor digitorum longus weight0.20.81.2-1.1-1.00.4
Bone: elastic displacement0.00.00.0-0.1-0.0-0.2
Bone: elastic work1.92.42.71.51.5-1.6
Bone: endosteal estimation1.73.83.82.02.0-1.9
Bone: endosteal perimeter1.53.13.61.91.8-1.6
Epididymis fat weight0.00.00.0-0.1-0.0-0.0
Delta time in closed arm before/after self-admin1.01.01.01.01.0-1.0
Delta time in open arm before/after self-admin0.70.70.9-0.9-0.80.6
Diff in mean of infusions in LGA sessions0.30.30.6-0.3-0.50.8
Delay discount exponential model param0.60.71.0-1.0-0.90.5
Extinction: sum of active levers before priming4.14.65.62.02.0-2.4
Active lever presses in extinction session 62.12.13.71.11.1-1.9
Bone: final force1.93.03.11.71.7-1.7
Bone: final moment2.54.04.12.02.0-2.0
Food consumed during 24 hour testing period0.70.91.41.21.1-0.6
Glucose0.30.40.7-0.8-0.70.2
Heart weight0.00.10.10.30.3-0.0
Delay discount hyperbolic model param0.40.50.7-0.9-0.70.4
Intermittent access intake day 1-15 change1.02.12.31.41.5-1.5
Intermittent access intake escalation0.71.51.71.11.2-1.3
Intermittent access intake escalation 21.31.51.91.11.2-1.4
Intermitt. access day 1 inactive lever presses1.76.58.12.92.7-2.0
Intermitt. access day 15 inactive lever presses0.61.32.01.41.3-0.5
Intermitt. access escalation Index0.10.10.3-0.2-0.20.6
Intermittent access day 1 total infusions1.52.53.9-1.2-1.42.0
Intermittent access day 15 total infusions0.00.10.20.0-0.00.4
Intermittent access terminal intake (last 3 days)0.20.30.7-0.2-0.30.9
Intermittent access total infusions0.50.61.2-0.5-0.61.1
Intermittent access day 1 locomotion0.81.02.3-0.4-0.71.5
Intermittent access day 15 total locomotion0.10.10.20.30.20.4
Intermittent access total locomotion1.01.22.0-0.8-0.91.4
Intermittent access standard deviation2.45.15.92.42.4-1.9
Left kidney weight1.98.710.02.72.9-3.2
Right kidney weight2.511.513.83.13.3-3.7
Cocaine induced anxiety0.00.00.0-0.00.0-0.1
Post-drug Anxiety0.00.00.00.1-0.10.2
Baseline Anxiety0.10.10.10.30.20.2
Tail length5.119.920.14.44.5-4.5
Length with tail7.030.331.05.45.5-5.6
Length without tail2.99.410.12.93.1-3.2
Times rat made contact with spout0.70.81.3-1.1-1.00.5
Lifetime Intake0.70.91.3-0.8-0.81.1
Liver weight, left0.61.01.1-1.1-1.00.9
Liver weight, right0.30.60.8-0.9-0.80.5
Locomotor activity0.50.71.2-1.1-1.00.3
Locomotor testing distance0.61.11.5-1.2-1.20.6
Locomotor testing rearing1.83.64.3-2.1-1.91.7
Locomotion in novel chamber0.00.00.1-0.2-0.30.1
Locomotion in novel chamber post-restriction0.10.10.20.40.2-0.2
Fecal boli incidents, locomotor time 11.82.73.1-1.6-1.81.5
Change in fecal boli incidents, locomotor task0.10.10.2-0.2-0.1-0.4
Time >=10cm from walls, locomotor time 10.00.00.0-0.2-0.20.1
Bouts of movement, locomotor time 10.91.01.61.21.1-0.5
Total resting periods, locomotor time 10.80.91.41.21.0-0.5
Rest time, locomotor task time 11.11.31.5-1.0-1.21.2
Distance moved, locomotor task time 10.00.00.0-0.00.10.0
Vertical activity count, locomotor time 10.81.82.21.41.5-1.2
Time >=10cm from walls, locomotor time 20.91.41.6-1.1-1.21.3
Bouts of movement, locomotor time 20.00.00.00.10.1-0.0
Total resting periods, locomotor time 20.00.00.0-0.1-0.10.1
Rest time, locomotor task time 20.30.30.4-0.6-0.60.5
Distance moved, locomotor task time 20.10.10.2-0.3-0.30.5
Vertical activity count, locomotor time 20.50.70.90.91.0-0.6
Light reinforcement 10.10.20.4-0.4-0.40.6
Light reinforcement 22.33.53.6-1.9-1.91.8
Bone: marrow area1.83.93.92.02.0-2.0
Bone: maximum diameter1.52.72.81.61.7-1.6
Bone: maximum force3.05.35.52.32.3-2.3
Bone: maximum moment3.66.46.52.52.6-2.5
Mean time between licks in bursts0.00.00.10.30.20.1
Mean num. licks in bursts1.21.93.11.11.2-1.8
Cd content in liver0.20.20.2-0.5-0.40.4
Co content in liver0.40.50.6-0.8-0.80.5
Cu content in liver1.01.21.31.11.1-1.1
Fe content in liver0.30.40.4-0.6-0.70.6
K content in liver0.00.00.00.20.2-0.2
Mg content in liver0.50.50.7-0.8-0.80.4
Mn content in liver0.60.60.9-1.0-0.90.4
Na content in liver0.80.90.91.01.0-0.9
Rb content in liver0.10.10.3-0.2-0.30.5
Se content in liver5.76.77.9-2.8-2.82.2
Sr content in liver0.20.20.3-0.5-0.50.2
Zn content in liver2.62.93.5-1.9-1.81.4
Bone: minimum diameter3.76.77.82.82.7-2.2
Time in familiar zone, hab. session 10.40.40.90.30.5-1.0
Time in novel zone, hab. session 11.51.52.4-0.9-1.01.5
Total zone transitions, hab. session 10.00.00.10.10.00.3
Total locomotion distance, hab. session 11.21.72.11.41.3-1.1
Locomotion velocity, hab. session 10.81.11.21.11.0-1.0
Time in familiar zone, hab. session 22.12.22.81.41.4-1.7
Time in novel zone, hab. session 21.41.41.5-1.2-1.11.2
Total zone transitions, hab. session 23.24.14.7-1.9-2.02.2
Total locomotion distance, hab. session 20.10.10.4-0.1-0.20.6
Locomotion velocity, hab. session 20.20.20.4-0.3-0.40.7
Novel to familiar place preference ratio0.10.10.10.40.4-0.2
Novelty place preference0.00.10.10.30.3-0.1
Time in novel zone, NPP test0.00.00.00.10.10.2
Total zone transitions, NPP test0.00.00.1-0.2-0.20.2
Total locomotion distance, NPP test2.73.63.81.91.9-2.0
Locomotion velocity, NPP test2.84.04.22.02.0-2.1
Intraocular pressure0.00.00.10.10.00.3
Delta distance traveled before/after self-admin1.71.82.01.21.4-1.4
Delta ambulatory time before/after self-admin1.51.82.01.21.4-1.4
Parametrial fat weight0.30.61.1-1.1-0.8-0.1
Pavlov. Cond. lever latency0.10.10.10.20.2-0.4
Pavlov. Cond. magazine entry latency0.81.01.1-1.1-1.10.9
Pavlov. Cond. change in total contacts0.40.40.8-0.4-0.50.9
Pavlov. Cond. index score0.50.70.7-0.8-0.80.8
Pavlov. Cond. latency score0.20.30.4-0.5-0.50.6
Pavlov. Cond. lever contacts0.00.00.00.20.10.0
Pavlov. Cond. magazine entry number0.60.70.80.90.9-0.9
Pavlov. Cond. intertrial magazine entries0.70.80.9-0.9-0.90.9
Pavlov. Cond. lever-magazine prob. diff.0.91.11.1-1.0-1.01.0
Pavlov. Cond. response bias0.30.40.5-0.7-0.70.5
Pavlov. Cond. lever latency5.37.27.8-2.8-2.82.5
Pavlov. Cond. magazine entry latency3.84.54.92.22.2-2.0
Pavlov. Cond. change in total contacts7.612.113.33.73.6-3.2
Pavlov. Cond. index score6.18.38.83.02.9-2.7
Pavlov. Cond. latency score5.57.37.92.82.8-2.5
Pavlov. Cond. lever contacts5.77.88.52.92.9-2.6
Pavlov. Cond. magazine entry number4.45.45.6-2.3-2.42.3
Pavlov. Cond. intertrial magazine entries1.11.61.7-1.3-1.31.2
Pavlov. Cond. lever-magazine prob. diff.5.77.78.02.82.8-2.6
Pavlov. Cond. response bias6.79.19.93.13.1-2.8
Time in closed arm before self-admin1.51.92.6-1.2-1.31.6
Time in closed arm after self-admin0.20.30.50.70.50.0
Time in open arm before self-admin4.75.26.32.12.2-2.5
Time in open arm after self-admin0.60.71.20.50.7-1.1
Bone: periosteal estimation2.55.25.42.22.3-2.3
Bone: periosteal perimeter1.62.72.91.61.6-1.7
Bone: post-yield work2.43.44.32.12.0-1.5
Progressive ratio test 1 active lever presses0.00.10.10.30.20.3
Progressive ratio test 1 breakpoint0.10.10.20.40.30.2
Progressive ratio test 1 inactive lever presses0.30.50.90.90.70.3
Progressive ratio test 2 active lever presses0.20.20.3-0.4-0.40.5
Progressive ratio test 2 breakpoint0.30.30.4-0.5-0.60.7
Progressive ratio test 2 inactive lever presses0.50.81.61.20.9-0.1
Incentive Sensitization - Responses0.40.60.6-0.7-0.80.8
Incentive Sensitization - Breakpoint0.40.60.6-0.7-0.70.8
Sum of active levers in priming session hrs 5-60.00.00.0-0.1-0.10.1
Progressive ratio0.00.00.00.10.00.1
Food seeking constrained by brief footshock3.03.74.12.01.9-1.8
Seeking ratio, punishment vs. effort0.40.60.60.80.8-0.6
Retroperitoneal fat weight0.72.94.8-2.2-1.90.5
Reaction time number correct0.00.00.1-0.3-0.20.1
Reaction time mean minus median0.20.40.50.50.6-0.7
Reaction time mean minus median AUC0.30.81.10.70.9-1.0
Reaction time num false alarms1.01.41.5-1.2-1.21.2
Reaction time num false alarms AUC1.11.81.8-1.3-1.31.3
Reaction time trials correct on left0.00.00.1-0.3-0.20.1
Reaction time trials on left0.00.10.1-0.3-0.20.1
Reaction time mean0.10.10.10.20.3-0.3
Reaction time mean AUC0.00.00.10.10.2-0.2
Median of all reaction times0.00.00.0-0.1-0.00.1
Reaction time omissions0.10.10.2-0.5-0.3-0.1
Reaction time false alarm rate0.60.91.1-0.8-0.91.0
Reaction time premature initiation rate0.00.10.10.30.20.2
Reaction time premature initiations0.00.00.10.10.10.3
Std. dev. reaction times0.30.60.70.70.8-0.7
Reaction time trials completed0.00.10.1-0.3-0.20.1
Reaction time trials AUC0.10.10.3-0.5-0.40.1
Run reversals in cocaine runway, females0.50.50.70.70.8-0.5
Run reversals in cocaine runway, males0.40.40.6-0.8-0.6-0.3
Latency to leave start box in cocaine runway0.10.10.20.40.4-0.1
Latency to leave start box in cocaine runway, F0.00.10.2-0.00.00.4
Latency to leave start box in cocaine runway, M0.00.00.10.20.2-0.1
Std. dev. time between licks in bursts0.30.40.70.80.60.0
Total sessions with >9 infusions1.31.61.8-1.4-1.31.1
Short access day 1 total inactive lever presses0.70.91.61.31.10.0
Short access day 10 total inactive lever presses1.84.46.42.52.3-1.4
Short access day 1 total infusions0.00.00.1-0.1-0.10.3
Short access day 10 total infusions0.30.40.4-0.6-0.70.7
Short access total infusions0.81.01.1-1.0-1.00.9
Short access day 1 locomotion1.21.41.5-1.2-1.21.2
Short access day 10 total locomotion0.40.71.21.10.9-0.4
Short access total locomotion1.11.31.6-1.0-1.11.3
One hour access (0.3 mA shock)0.60.71.11.10.9-0.3
Compulsive drug intake0.00.10.10.20.20.3
One hour access (shock baseline)0.00.00.10.30.20.1
Social response proportion2.42.73.21.81.7-1.5
Social responses0.70.91.11.11.0-0.8
Social time2.83.84.52.12.1-1.6
Soleus weight0.00.10.2-0.5-0.40.2
Bone: stiffness1.62.52.71.61.6-1.5
Tibialis anterior weight0.10.30.6-0.8-0.6-0.1
Time to tail flick, vehicle, before self-admin0.40.40.4-0.6-0.60.7
Time to tail flick, vehicle, after self-admin0.50.70.91.00.7-0.8
Time to tail flick, test, before self-admin0.20.20.5-0.1-0.10.7
Time to tail flick, test, after self-admin0.10.10.1-0.2-0.30.3
Delta time to tail flick, vehicle, before/after SA1.00.91.01.01.0-0.9
Delta time to tail flick, test, before/after SA0.30.30.4-0.6-0.60.0
Tibia length2.57.07.22.62.7-2.6
Ambulatory time before self-admin0.30.40.70.80.6-0.4
Ambulatory time after self-admin4.65.45.92.42.4-2.2
Bone: tissue strength3.13.23.82.01.9-1.4
Total heroin consumption0.50.50.80.90.8-0.4
Bone: trabecular number1.22.12.11.41.5-1.4
Bone: trabecular spacing0.30.40.60.50.5-0.8
Bone: trabecular thickness0.10.10.1-0.4-0.30.3
Bone: trabecular tissue density1.82.73.9-2.0-1.80.9
Water consumed over 24 hours0.40.60.70.70.7-0.9
Number of responses in last shaping day0.10.10.20.40.4-0.2