LOC120096890

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC120096890 0.15 0.1 1.2e-04 0.03 0.03 0.05 0.03 1.1e-04 2.3e-04 5.0e-06 5.7e-04
2 Adipose gene expression LOC120096890 0.05 0.04 4.9e-06 0.02 0.03 0.03 0.03 9.1e-04 1.7e-04 2.7e-04 2.7e-04
3 Brain gene expression LOC120096890 0.08 0.06 7.9e-06 0.04 0.03 0.04 0.05 8.0e-05 8.3e-04 7.7e-05 1.5e-05
4 pVTA gene expression LOC120096890 0.03 0.03 9.1e-03 0.02 0.01 0.01 0.02 7.0e-03 1.9e-02 9.6e-02 7.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.20.3-0.4-0.4-0.2
Area under the delay curve0.40.40.7-0.70.80.70.1
BMI with tail0.72.43.3-1.8-1.8-1.5-0.8
BMI without tail0.51.62.4-0.6-1.6-1.5-1.3
Body weight1.77.68.6-2.7-2.9-2.9-2.5
Weight adjusted by age1.01.55.12.3-0.5-0.7-0.5
Bone surface0.20.40.8-0.5-0.9-0.7-0.4
Bone volume0.40.71.0-0.6-0.9-1.0-0.7
Breakpoint value in progressive ratio session1.01.22.31.01.50.81.0
Number of licking bursts1.42.23.0-1.5-1.3-1.7-1.4
Context. condit. distance diff. score0.10.20.40.1-0.6-0.3-0.5
Locomotion velocity, session 10.10.10.20.5-0.10.10.1
Locomotion distance, session 10.10.20.40.1-0.5-0.6-0.1
Locomotion velocity, session 20.00.00.10.0-0.3-0.1-0.1
Locomotion distance, session 20.10.10.20.20.00.20.5
Locomotion velocity, session 30.20.20.60.30.20.50.7
Locomotion distance, session 33.94.25.62.41.71.92.1
Stereotopy head waving bouts, day 30.10.10.30.0-0.5-0.3-0.2
Stereotopy head waving duration, day 30.60.71.3-0.6-1.1-0.9-0.7
Locomotion velocity, session 70.70.70.90.90.60.90.9
Locomotion distance, session 70.10.10.20.4-0.3-0.10.1
Stereotopy head waving bouts, day 70.20.20.40.5-0.60.20.2
Stereotopy head waving duration, day 70.10.20.70.1-0.80.0-0.2
Locomotion velocity, session 81.51.82.41.61.01.31.4
Locomotion distance, session 80.00.10.10.3-0.3-0.2-0.2
Degree of sensitization distance3.23.33.8-1.7-1.8-1.9-1.8
Degree of sensitization stereotypy0.10.10.50.2-0.70.2-0.1
Conditioned locomotion3.13.54.71.81.42.22.0
Cocaine response after cond. corrected0.50.51.1-1.1-0.5-0.8-0.4
Cocaine response after cond. not corrected0.50.60.9-1.0-0.7-0.9-0.4
Cocaine response before conditioning0.10.10.20.2-0.4-0.20.2
Saline control response0.60.91.8-0.6-1.4-0.8-0.8
Bone: connectivity density0.10.20.40.6-0.10.30.5
Bone: cortical apparent density0.81.12.6-1.6-0.2-0.9-1.0
Bone: cortical area1.32.02.8-0.6-1.6-1.7-1.5
Bone: cortical porosity3.74.04.71.91.92.22.1
Bone: cortical porosity2.22.43.01.51.41.71.6
Bone: cortical thickness0.71.11.6-0.7-1.0-1.2-1.1
Bone: cortical thickness1.61.93.2-1.8-1.2-1.4-1.0
Bone: cortical tissue density0.70.92.3-1.5-0.1-0.8-0.9
Condit. Reinf. active minus inactive responses0.30.30.7-0.4-0.6-0.9-0.3
Condit. Reinf. active-inactive response ratio0.50.51.0-0.2-0.9-1.0-0.4
Condit. Reinf. active responses0.00.00.1-0.1-0.4-0.1-0.2
Condit. Reinf. inactive responses0.10.10.40.30.00.6-0.1
Incentive salience index mean0.10.10.20.40.10.20.4
Condit. Reinf. lever presses0.91.31.81.30.71.31.1
Condit. Reinf. active minus inactive responses0.10.10.40.3-0.00.00.6
Condit. Reinf. active-inactive response ratio0.10.10.3-0.6-0.2-0.20.0
Condit. Reinf. active responses0.81.22.11.50.70.61.3
Condit. Reinf. inactive responses1.82.45.02.21.01.11.5
Condit. Reinf. lever presses0.60.91.5-0.3-1.1-1.2-0.8
Condit. Reinf. lever reinforcers received1.11.52.51.60.80.91.5
Conditioned reinforcement - actives0.71.12.0-1.2-1.4-0.6-0.9
Conditioned reinforcement - inactives1.01.45.6-2.4-0.10.2-0.2
Conditioned locomotion0.70.92.0-1.1-1.4-0.4-0.6
Patch foraging indifference point 0 sec1.01.85.82.4-0.40.21.1
Patch foraging indifference point AUC0.60.81.8-0.9-1.3-0.7-0.2
Delay disc. indifference point, 0s delay2.52.74.11.61.42.01.6
Delay disc. indifference point, 16s delay1.71.97.1-2.70.5-0.1-0.6
Delay disc. indifference point, 2s delay0.30.30.80.10.90.8-0.0
Delay disc. indifference point, 24s delay2.83.19.9-3.2-1.0-0.6-1.1
Delay disc. indifference point, 4s delay0.10.10.20.40.1-0.30.3
Delay disc. indifference point, 8s delay0.40.51.00.20.91.00.2
Indifference point function ln k0.10.10.3-0.00.60.0-0.1
Indifference point function log k0.10.10.3-0.00.60.0-0.1
Patch foraging total patch changes 0 sec0.71.34.02.0-0.8-0.00.7
Patch foraging total patch changes 12 sec0.50.71.71.0-0.3-0.11.3
Patch foraging total patch changes 18 sec0.91.43.80.4-1.9-1.2-0.2
Patch foraging total patch changes 24 sec0.20.41.00.3-0.5-0.51.0
Patch foraging total patch changes 6 sec0.60.91.91.4-0.90.01.0
Patch foraging time to switch 0 sec0.71.54.20.32.00.91.0
Patch foraging water rate 0 sec0.71.54.0-0.8-2.0-1.0-0.8
Patch foraging water rate 12 sec0.10.20.60.2-0.8-0.4-0.4
Patch foraging water rate 18 sec0.60.91.3-0.7-1.1-0.9-1.1
Patch foraging water rate 24 sec0.50.71.5-0.4-1.2-0.9-0.7
Patch foraging water rate 6 sec2.13.04.2-2.1-1.6-1.9-1.4
Seeking ratio, delayed vs. immediate footshock7.18.721.74.71.72.22.4
Distance traveled before self-admin0.30.50.90.5-0.8-0.0-1.0
Distance traveled after self-admin0.20.30.60.40.60.80.2
Extensor digitorum longus weight3.212.714.6-3.6-3.4-3.8-3.4
Bone: elastic displacement1.31.52.91.71.00.91.1
Bone: elastic work0.30.31.11.1-0.10.40.2
Bone: endosteal estimation0.00.10.20.4-0.00.40.4
Bone: endosteal perimeter0.10.10.30.6-0.3-0.2-0.2
Epididymis fat weight0.20.71.4-0.91.20.10.7
Delta time in closed arm before/after self-admin0.60.61.41.2-0.7-0.6-0.3
Delta time in open arm before/after self-admin0.60.60.9-0.90.90.30.8
Diff in mean of infusions in LGA sessions0.81.01.61.31.10.70.9
Delay discount exponential model param0.30.30.60.8-0.6-0.40.1
Extinction: sum of active levers before priming2.22.46.82.60.70.91.3
Active lever presses in extinction session 60.20.20.7-0.4-0.1-0.80.1
Bone: final force0.40.71.1-0.0-1.0-0.9-0.9
Bone: final moment0.50.81.30.1-1.1-0.9-0.9
Food consumed during 24 hour testing period3.44.75.72.22.12.12.4
Glucose0.50.91.21.00.71.10.9
Heart weight0.91.42.5-0.0-1.6-1.3-1.2
Delay discount hyperbolic model param0.20.20.30.4-0.5-0.5-0.0
Intermittent access intake day 1-15 change0.81.62.6-0.3-1.3-1.5-1.6
Intermittent access intake escalation0.91.82.8-0.2-1.4-1.6-1.7
Intermittent access intake escalation 21.41.66.02.5-0.5-0.1-0.4
Intermitt. access day 1 inactive lever presses0.10.20.7-0.2-0.3-0.3-0.9
Intermitt. access day 15 inactive lever presses0.81.72.4-0.8-1.2-1.5-1.6
Intermitt. access escalation Index0.40.61.11.00.60.11.0
Intermittent access day 1 total infusions1.01.63.8-2.0-1.3-0.7-0.5
Intermittent access day 15 total infusions1.82.74.1-2.0-1.6-1.7-1.0
Intermittent access terminal intake (last 3 days)1.72.23.8-2.0-1.6-1.3-0.9
Intermittent access total infusions3.64.38.8-3.0-1.9-1.7-1.3
Intermittent access day 1 locomotion0.30.41.1-0.60.10.51.1
Intermittent access day 15 total locomotion0.10.20.6-0.3-0.8-0.2-0.4
Intermittent access total locomotion1.51.83.7-1.9-1.4-1.0-0.9
Intermittent access standard deviation0.00.10.2-0.2-0.0-0.3-0.4
Left kidney weight2.511.617.3-2.7-4.2-3.7-2.9
Right kidney weight2.812.917.0-3.2-4.1-3.8-3.1
Cocaine induced anxiety0.50.72.7-1.60.4-0.3-0.2
Post-drug Anxiety0.40.41.4-1.20.3-0.40.3
Baseline Anxiety1.11.34.92.2-0.00.40.4
Tail length0.41.62.90.3-1.3-1.3-1.7
Length with tail0.73.24.3-1.4-1.6-2.1-2.0
Length without tail1.85.810.0-3.2-1.9-2.5-1.8
Times rat made contact with spout0.20.30.5-0.5-0.2-0.5-0.7
Lifetime Intake2.83.47.4-2.7-1.7-1.4-1.1
Liver weight, left0.20.41.0-0.3-1.0-0.6-0.4
Liver weight, right0.61.02.2-0.7-1.5-1.0-0.6
Locomotor activity0.40.61.30.2-0.9-1.2-0.6
Locomotor testing distance0.20.30.7-0.3-0.5-0.8-0.4
Locomotor testing rearing1.93.96.7-0.8-2.6-2.1-2.0
Locomotion in novel chamber0.40.51.21.10.60.60.4
Locomotion in novel chamber post-restriction0.20.40.90.90.8-0.1-0.2
Fecal boli incidents, locomotor time 10.50.72.30.2-0.5-0.7-1.5
Change in fecal boli incidents, locomotor task1.41.44.12.00.30.51.1
Time >=10cm from walls, locomotor time 10.30.30.7-0.8-0.5-0.3-0.3
Bouts of movement, locomotor time 11.01.21.71.30.81.30.8
Total resting periods, locomotor time 10.91.01.51.20.91.10.6
Rest time, locomotor task time 10.20.20.50.70.40.50.1
Distance moved, locomotor task time 10.30.41.2-0.20.40.61.1
Vertical activity count, locomotor time 10.81.84.32.10.61.01.3
Time >=10cm from walls, locomotor time 20.20.30.40.40.30.70.6
Bouts of movement, locomotor time 21.11.83.81.22.01.10.7
Total resting periods, locomotor time 21.11.93.91.22.01.20.8
Rest time, locomotor task time 20.30.40.70.90.50.8-0.1
Distance moved, locomotor task time 20.30.41.4-0.4-0.20.21.2
Vertical activity count, locomotor time 20.20.20.5-0.60.20.10.7
Light reinforcement 10.10.20.6-0.8-0.20.30.2
Light reinforcement 20.00.10.2-0.4-0.3-0.2-0.2
Bone: marrow area0.10.10.20.4-0.00.40.4
Bone: maximum diameter1.42.64.0-0.6-2.0-1.9-1.6
Bone: maximum force0.20.40.80.2-0.9-0.6-0.6
Bone: maximum moment0.30.50.90.3-1.0-0.7-0.7
Mean time between licks in bursts0.10.20.80.90.20.10.1
Mean num. licks in bursts1.32.02.91.41.31.71.2
Cd content in liver0.70.81.3-0.6-0.7-1.1-1.0
Co content in liver1.11.31.51.21.21.11.0
Cu content in liver1.31.62.7-1.3-0.6-1.2-1.6
Fe content in liver2.22.73.9-2.0-1.8-1.6-1.1
K content in liver0.80.81.91.40.60.70.6
Mg content in liver0.00.00.00.20.20.0-0.1
Mn content in liver1.21.31.81.10.71.31.4
Na content in liver0.10.10.30.50.1-0.10.1
Rb content in liver0.10.10.2-0.5-0.3-0.4-0.1
Se content in liver0.20.30.6-0.2-0.8-0.4-0.4
Sr content in liver0.70.61.51.20.20.80.6
Zn content in liver0.60.71.0-0.8-0.7-0.8-1.0
Bone: minimum diameter0.40.71.2-0.2-1.0-1.1-0.9
Time in familiar zone, hab. session 10.30.30.60.8-0.6-0.30.1
Time in novel zone, hab. session 10.90.91.2-1.1-0.7-1.0-0.9
Total zone transitions, hab. session 10.50.61.1-0.3-1.0-1.0-0.6
Total locomotion distance, hab. session 10.10.20.70.80.1-0.1-0.2
Locomotion velocity, hab. session 10.10.20.50.70.50.2-0.1
Time in familiar zone, hab. session 21.51.51.8-1.0-1.3-1.3-1.3
Time in novel zone, hab. session 20.00.00.00.00.2-0.00.0
Total zone transitions, hab. session 20.10.20.30.5-0.6-0.3-0.1
Total locomotion distance, hab. session 20.10.20.30.60.50.30.1
Locomotion velocity, hab. session 20.20.20.50.70.40.40.3
Novel to familiar place preference ratio1.11.21.9-0.7-1.4-1.1-1.0
Novelty place preference0.91.01.5-0.8-1.2-1.1-0.8
Time in novel zone, NPP test1.41.52.2-1.1-1.5-1.3-1.1
Total zone transitions, NPP test0.10.10.30.0-0.5-0.5-0.3
Total locomotion distance, NPP test0.91.31.9-0.7-1.1-1.4-1.3
Locomotion velocity, NPP test0.50.71.2-0.3-0.8-1.1-1.0
Intraocular pressure1.01.41.7-1.3-1.0-1.3-1.1
Delta distance traveled before/after self-admin1.11.22.5-0.11.60.91.2
Delta ambulatory time before/after self-admin0.50.61.20.01.10.50.9
Parametrial fat weight0.30.82.91.7-0.3-0.2-0.4
Pavlov. Cond. lever latency0.60.71.1-1.0-0.4-1.0-0.9
Pavlov. Cond. magazine entry latency0.30.40.60.0-0.8-0.7-0.6
Pavlov. Cond. change in total contacts1.92.02.81.71.21.41.4
Pavlov. Cond. index score0.30.41.01.00.10.50.5
Pavlov. Cond. latency score0.81.02.01.40.50.91.0
Pavlov. Cond. lever contacts0.30.40.60.80.30.70.6
Pavlov. Cond. magazine entry number0.10.10.2-0.50.30.40.1
Pavlov. Cond. intertrial magazine entries0.30.30.60.50.20.80.6
Pavlov. Cond. lever-magazine prob. diff.0.20.30.60.80.10.50.4
Pavlov. Cond. response bias0.30.40.7-0.2-0.8-0.6-0.6
Pavlov. Cond. lever latency0.20.30.8-0.90.40.6-0.0
Pavlov. Cond. magazine entry latency2.42.93.7-1.5-1.9-1.8-1.5
Pavlov. Cond. change in total contacts0.30.41.00.2-0.6-1.0-0.6
Pavlov. Cond. index score1.11.42.3-0.6-1.3-1.5-1.1
Pavlov. Cond. latency score0.81.11.8-0.5-1.1-1.4-0.9
Pavlov. Cond. lever contacts0.40.51.00.5-0.8-1.0-0.4
Pavlov. Cond. magazine entry number2.12.52.91.51.61.71.5
Pavlov. Cond. intertrial magazine entries1.52.33.21.01.61.81.6
Pavlov. Cond. lever-magazine prob. diff.1.21.62.4-0.8-1.4-1.5-1.2
Pavlov. Cond. response bias0.30.50.90.1-0.9-1.0-0.5
Time in closed arm before self-admin0.81.02.1-1.5-1.1-0.2-0.7
Time in closed arm after self-admin2.02.17.0-2.6-0.3-0.9-0.7
Time in open arm before self-admin4.55.019.24.40.50.5-0.4
Time in open arm after self-admin4.14.511.73.41.61.21.5
Bone: periosteal estimation0.20.50.9-0.1-0.9-0.8-0.7
Bone: periosteal perimeter0.30.60.80.0-0.9-0.9-0.9
Bone: post-yield work0.20.20.30.30.60.50.5
Progressive ratio test 1 active lever presses0.30.41.0-0.8-1.00.10.0
Progressive ratio test 1 breakpoint0.20.30.8-0.5-0.90.20.2
Progressive ratio test 1 inactive lever presses3.14.413.6-3.7-1.3-0.8-1.3
Progressive ratio test 2 active lever presses3.54.18.4-2.9-1.7-1.6-1.5
Progressive ratio test 2 breakpoint4.04.69.9-3.1-1.8-1.7-1.6
Progressive ratio test 2 inactive lever presses0.61.02.5-1.6-0.8-0.8-0.5
Incentive Sensitization - Responses5.67.918.4-4.3-1.8-2.3-2.2
Incentive Sensitization - Breakpoint6.17.918.8-4.3-1.7-2.4-2.1
Sum of active levers in priming session hrs 5-62.01.92.6-1.01.51.21.6
Progressive ratio0.20.30.5-0.50.70.70.4
Food seeking constrained by brief footshock13.416.431.35.63.03.73.5
Seeking ratio, punishment vs. effort2.43.57.92.81.41.31.6
Retroperitoneal fat weight0.10.60.8-0.9-0.5-0.9-0.8
Reaction time number correct3.56.69.8-1.6-3.1-2.3-3.0
Reaction time mean minus median0.00.10.3-0.5-0.20.30.0
Reaction time mean minus median AUC0.51.33.0-1.7-1.0-0.6-1.0
Reaction time num false alarms2.02.96.6-0.7-2.6-1.5-1.5
Reaction time num false alarms AUC1.42.15.5-0.2-2.3-1.1-1.4
Reaction time trials correct on left3.56.69.8-1.6-3.1-2.3-3.0
Reaction time trials on left3.56.69.8-1.6-3.1-2.3-3.0
Reaction time mean0.30.50.6-0.60.80.70.8
Reaction time mean AUC0.30.50.7-0.30.70.90.8
Median of all reaction times0.50.71.2-0.41.10.81.0
Reaction time omissions0.00.00.1-0.2-0.1-0.1-0.2
Reaction time false alarm rate0.20.20.50.7-0.30.30.4
Reaction time premature initiation rate0.50.71.3-0.41.20.51.0
Reaction time premature initiations0.40.71.8-1.3-0.5-0.7-0.7
Std. dev. reaction times0.10.20.4-0.60.20.60.4
Reaction time trials completed3.56.69.8-1.6-3.1-2.3-3.0
Reaction time trials AUC4.07.611.3-1.7-3.4-2.5-3.1
Run reversals in cocaine runway, females0.10.10.3-0.50.2-0.1-0.4
Run reversals in cocaine runway, males0.30.30.6-0.8-0.3-0.4-0.5
Latency to leave start box in cocaine runway1.11.21.6-1.3-1.1-1.1-0.9
Latency to leave start box in cocaine runway, F0.91.01.3-0.8-1.1-1.0-1.1
Latency to leave start box in cocaine runway, M0.80.72.3-1.5-0.4-0.6-0.0
Std. dev. time between licks in bursts0.40.51.71.3-0.10.30.6
Total sessions with >9 infusions2.32.88.3-2.9-1.2-0.9-0.8
Short access day 1 total inactive lever presses3.54.514.6-3.8-0.5-1.5-1.0
Short access day 10 total inactive lever presses0.20.40.6-0.80.80.2-0.5
Short access day 1 total infusions1.72.27.6-2.7-0.8-0.6-0.6
Short access day 10 total infusions2.02.65.8-2.4-1.7-0.5-1.2
Short access total infusions1.41.74.9-2.2-1.1-0.4-0.7
Short access day 1 locomotion3.03.78.1-2.9-1.5-1.5-1.5
Short access day 10 total locomotion0.20.41.21.10.10.70.0
Short access total locomotion0.10.10.30.1-0.10.50.5
One hour access (0.3 mA shock)2.22.69.1-3.0-0.3-1.1-0.1
Compulsive drug intake0.60.71.5-1.20.5-0.11.0
One hour access (shock baseline)2.43.79.3-3.0-1.4-1.5-1.1
Social response proportion0.60.71.4-0.9-1.2-0.5-0.7
Social responses0.10.10.2-0.3-0.40.00.3
Social time1.52.02.91.31.71.31.3
Soleus weight1.75.17.2-1.8-2.0-2.5-2.7
Bone: stiffness1.11.82.3-0.9-1.5-1.3-1.5
Tibialis anterior weight4.615.416.9-3.5-4.1-4.0-4.1
Time to tail flick, vehicle, before self-admin0.40.41.01.0-0.80.20.2
Time to tail flick, vehicle, after self-admin1.11.52.3-1.5-1.0-1.4-0.8
Time to tail flick, test, before self-admin4.95.19.93.11.62.11.9
Time to tail flick, test, after self-admin0.70.71.40.90.51.20.7
Delta time to tail flick, vehicle, before/after SA0.70.71.3-1.1-0.5-0.7-0.8
Delta time to tail flick, test, before/after SA1.41.42.0-1.4-1.3-0.9-1.2
Tibia length0.10.20.5-0.7-0.30.20.1
Ambulatory time before self-admin0.10.20.50.3-0.40.1-0.7
Ambulatory time after self-admin0.40.50.70.30.80.90.7
Bone: tissue strength2.12.15.72.40.81.20.9
Total heroin consumption0.50.61.10.80.41.00.8
Bone: trabecular number0.10.10.30.60.10.20.3
Bone: trabecular spacing0.00.10.10.2-0.2-0.3-0.3
Bone: trabecular thickness1.01.31.6-1.0-1.3-1.2-1.2
Bone: trabecular tissue density2.63.86.7-2.6-1.2-1.6-2.1
Water consumed over 24 hours0.70.91.50.50.81.11.2
Number of responses in last shaping day4.85.314.1-3.8-1.7-1.6-1.2