LOC120096890

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC120096890 0.15 0.1 1.2e-04 0.03 0.03 0.05 0.03 1.1e-04 2.3e-04 4.7e-06 6.2e-04
2 Adipose gene expression LOC120096890 0.05 0.04 4.9e-06 0.02 0.03 0.03 0.03 9.1e-04 1.7e-04 2.7e-04 2.7e-04
3 Brain gene expression LOC120096890 0.08 0.06 7.9e-06 0.04 0.03 0.04 0.05 8.0e-05 8.3e-04 7.7e-05 1.6e-05
4 pVTA gene expression LOC120096890 0.03 0.03 9.1e-03 0.02 0.01 0.01 0.02 7.0e-03 1.9e-02 9.6e-02 8.3e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.2-0.3-0.4-0.40.2
Area under the delay curve0.30.40.70.70.80.7-0.1
BMI with tail0.72.43.31.8-1.8-1.50.8
BMI without tail0.31.62.40.6-1.6-1.51.3
Body weight1.77.68.62.6-2.9-2.92.5
Weight adjusted by age0.51.55.2-2.3-0.5-0.60.5
Bone surface0.20.40.80.5-0.9-0.70.4
Bone volume0.30.71.00.6-0.9-1.00.7
Breakpoint value in progressive ratio session0.71.22.3-1.01.50.8-1.0
Number of licking bursts0.72.23.01.5-1.3-1.71.4
Context. condit. distance diff. score0.10.20.4-0.1-0.6-0.30.5
Locomotion velocity, session 10.10.10.3-0.5-0.10.1-0.1
Locomotion distance, session 10.10.20.4-0.1-0.5-0.60.1
Locomotion velocity, session 20.00.00.1-0.0-0.3-0.10.1
Locomotion distance, session 20.10.10.2-0.20.00.2-0.5
Locomotion velocity, session 30.20.20.6-0.20.20.5-0.7
Locomotion distance, session 33.74.25.6-2.41.71.9-2.1
Stereotopy head waving bouts, day 30.10.10.30.0-0.5-0.30.2
Stereotopy head waving duration, day 30.60.71.30.6-1.1-0.90.7
Locomotion velocity, session 70.70.70.9-0.90.60.9-0.9
Locomotion distance, session 70.10.10.2-0.4-0.3-0.1-0.1
Stereotopy head waving bouts, day 70.10.20.4-0.4-0.60.2-0.2
Stereotopy head waving duration, day 70.10.20.7-0.1-0.8-0.00.2
Locomotion velocity, session 81.51.82.4-1.61.01.3-1.4
Locomotion distance, session 80.00.10.1-0.3-0.3-0.20.2
Degree of sensitization distance3.03.33.81.7-1.8-1.91.8
Degree of sensitization stereotypy0.10.10.5-0.1-0.70.20.1
Conditioned locomotion3.03.54.7-1.81.42.2-2.0
Cocaine response after cond. corrected0.40.51.11.1-0.5-0.80.4
Cocaine response after cond. not corrected0.40.61.01.0-0.7-0.90.4
Cocaine response before conditioning0.10.10.2-0.1-0.4-0.2-0.2
Saline control response0.60.91.80.6-1.4-0.80.8
Bone: connectivity density0.10.20.4-0.6-0.10.3-0.5
Bone: cortical apparent density0.71.12.51.6-0.2-0.91.0
Bone: cortical area1.22.02.80.6-1.6-1.71.5
Bone: cortical porosity3.74.04.7-1.91.92.2-2.1
Bone: cortical porosity2.22.43.0-1.51.41.7-1.6
Bone: cortical thickness0.61.11.60.6-1.0-1.21.1
Bone: cortical thickness1.51.93.21.8-1.2-1.41.0
Bone: cortical tissue density0.60.92.21.5-0.1-0.80.9
Condit. Reinf. active minus inactive responses0.30.30.70.4-0.6-0.90.3
Condit. Reinf. active-inactive response ratio0.50.51.00.3-0.9-1.00.4
Condit. Reinf. active responses0.00.00.10.1-0.4-0.10.2
Condit. Reinf. inactive responses0.10.10.4-0.30.00.60.1
Incentive salience index mean0.10.10.2-0.40.10.2-0.4
Condit. Reinf. lever presses0.91.31.7-1.30.71.3-1.1
Condit. Reinf. active minus inactive responses0.10.10.4-0.3-0.00.0-0.6
Condit. Reinf. active-inactive response ratio0.10.10.40.6-0.2-0.2-0.0
Condit. Reinf. active responses0.81.22.1-1.40.70.6-1.3
Condit. Reinf. inactive responses1.62.45.1-2.31.01.1-1.5
Condit. Reinf. lever presses0.60.91.50.3-1.1-1.20.8
Condit. Reinf. lever reinforcers received1.11.52.4-1.60.80.9-1.5
Conditioned reinforcement - actives0.31.12.01.2-1.4-0.60.9
Conditioned reinforcement - inactives0.51.55.72.4-0.10.20.2
Conditioned locomotion0.60.92.01.1-1.4-0.40.6
Patch foraging indifference point 0 sec0.61.85.9-2.4-0.40.2-1.1
Patch foraging indifference point AUC0.30.81.81.0-1.3-0.70.2
Delay disc. indifference point, 0s delay2.42.84.1-1.61.42.0-1.6
Delay disc. indifference point, 16s delay1.41.97.12.70.5-0.10.6
Delay disc. indifference point, 2s delay0.30.30.8-0.10.90.80.0
Delay disc. indifference point, 24s delay2.03.19.93.1-1.0-0.61.1
Delay disc. indifference point, 4s delay0.10.10.2-0.40.1-0.3-0.3
Delay disc. indifference point, 8s delay0.30.51.0-0.20.91.0-0.2
Indifference point function ln k0.00.10.3-0.00.60.00.1
Indifference point function log k0.00.10.3-0.00.60.00.1
Patch foraging total patch changes 0 sec0.41.34.1-2.0-0.8-0.0-0.7
Patch foraging total patch changes 12 sec0.50.71.7-1.0-0.3-0.1-1.3
Patch foraging total patch changes 18 sec0.61.43.8-0.4-1.9-1.20.2
Patch foraging total patch changes 24 sec0.10.41.0-0.3-0.5-0.5-1.0
Patch foraging total patch changes 6 sec0.50.91.8-1.3-0.90.0-1.0
Patch foraging time to switch 0 sec0.41.54.2-0.32.00.9-1.0
Patch foraging water rate 0 sec0.41.64.00.8-2.0-1.00.8
Patch foraging water rate 12 sec0.10.20.6-0.2-0.8-0.40.4
Patch foraging water rate 18 sec0.40.91.30.6-1.1-0.91.1
Patch foraging water rate 24 sec0.50.71.50.4-1.2-0.90.7
Patch foraging water rate 6 sec2.13.04.22.1-1.6-1.91.4
Seeking ratio, delayed vs. immediate footshock6.18.721.5-4.61.72.2-2.4
Distance traveled before self-admin0.20.50.9-0.6-0.8-0.01.0
Distance traveled after self-admin0.20.30.6-0.50.60.8-0.2
Extensor digitorum longus weight3.212.714.63.5-3.4-3.83.4
Bone: elastic displacement1.21.52.9-1.71.01.0-1.1
Bone: elastic work0.30.31.2-1.1-0.10.4-0.2
Bone: endosteal estimation0.00.10.2-0.4-0.00.4-0.4
Bone: endosteal perimeter0.10.10.4-0.6-0.3-0.20.2
Epididymis fat weight0.10.71.40.91.20.1-0.7
Delta time in closed arm before/after self-admin0.60.61.4-1.2-0.7-0.60.3
Delta time in open arm before/after self-admin0.60.70.91.00.90.3-0.8
Diff in mean of infusions in LGA sessions0.61.01.6-1.31.10.7-0.9
Delay discount exponential model param0.20.30.6-0.8-0.6-0.4-0.1
Extinction: sum of active levers before priming1.62.57.0-2.70.70.9-1.3
Active lever presses in extinction session 60.20.20.70.3-0.1-0.8-0.1
Bone: final force0.40.71.1-0.0-1.0-0.90.9
Bone: final moment0.50.81.3-0.2-1.1-0.90.9
Food consumed during 24 hour testing period2.34.75.7-2.12.12.1-2.4
Glucose0.50.91.2-1.00.71.1-0.9
Heart weight0.81.42.50.0-1.6-1.31.2
Delay discount hyperbolic model param0.10.20.3-0.4-0.5-0.40.0
Intermittent access intake day 1-15 change0.31.62.60.3-1.3-1.51.6
Intermittent access intake escalation0.31.82.80.2-1.4-1.61.7
Intermittent access intake escalation 21.01.66.0-2.4-0.5-0.10.4
Intermitt. access day 1 inactive lever presses0.00.20.70.2-0.3-0.30.9
Intermitt. access day 15 inactive lever presses0.31.72.40.8-1.2-1.51.6
Intermitt. access escalation Index0.20.61.1-1.00.60.1-1.0
Intermittent access day 1 total infusions0.51.63.92.0-1.3-0.80.5
Intermittent access day 15 total infusions1.12.74.42.1-1.6-1.71.0
Intermittent access terminal intake (last 3 days)1.32.24.02.0-1.6-1.30.9
Intermittent access total infusions3.74.49.13.0-1.9-1.71.3
Intermittent access day 1 locomotion0.20.41.10.60.10.5-1.1
Intermittent access day 15 total locomotion0.10.20.60.4-0.8-0.20.4
Intermittent access total locomotion1.61.93.92.0-1.4-1.00.9
Intermittent access standard deviation0.00.10.20.3-0.0-0.30.4
Left kidney weight1.511.717.32.7-4.2-3.72.9
Right kidney weight1.913.017.03.3-4.1-3.83.1
Cocaine induced anxiety0.30.82.71.70.4-0.30.2
Post-drug Anxiety0.40.51.51.20.3-0.4-0.3
Baseline Anxiety0.81.34.9-2.2-0.00.4-0.4
Tail length0.31.62.9-0.3-1.3-1.31.7
Length with tail0.73.24.31.4-1.6-2.12.0
Length without tail1.15.810.03.2-1.9-2.51.8
Times rat made contact with spout0.20.20.50.5-0.2-0.50.7
Lifetime Intake2.83.57.62.8-1.7-1.41.1
Liver weight, left0.20.41.00.3-1.0-0.60.4
Liver weight, right0.61.02.20.7-1.5-1.00.6
Locomotor activity0.40.61.3-0.2-0.9-1.20.6
Locomotor testing distance0.10.30.70.3-0.5-0.80.4
Locomotor testing rearing1.13.96.70.8-2.6-2.12.0
Locomotion in novel chamber0.40.51.3-1.10.60.6-0.4
Locomotion in novel chamber post-restriction0.10.40.9-0.90.8-0.10.2
Fecal boli incidents, locomotor time 10.30.72.3-0.2-0.5-0.71.5
Change in fecal boli incidents, locomotor task1.41.54.4-2.10.30.5-1.1
Time >=10cm from walls, locomotor time 10.20.30.70.8-0.5-0.30.3
Bouts of movement, locomotor time 10.91.21.8-1.40.81.3-0.8
Total resting periods, locomotor time 10.91.01.6-1.30.91.1-0.6
Rest time, locomotor task time 10.20.20.6-0.70.40.5-0.1
Distance moved, locomotor task time 10.20.41.20.30.40.6-1.1
Vertical activity count, locomotor time 10.31.84.3-2.10.61.0-1.3
Time >=10cm from walls, locomotor time 20.10.20.4-0.30.30.7-0.6
Bouts of movement, locomotor time 20.51.83.8-1.22.01.1-0.7
Total resting periods, locomotor time 20.51.93.9-1.22.01.2-0.8
Rest time, locomotor task time 20.30.40.8-0.90.50.80.1
Distance moved, locomotor task time 20.30.41.40.4-0.20.2-1.2
Vertical activity count, locomotor time 20.10.20.50.60.20.1-0.7
Light reinforcement 10.00.20.70.8-0.20.3-0.2
Light reinforcement 20.00.10.20.4-0.3-0.20.2
Bone: marrow area0.00.10.2-0.4-0.00.4-0.4
Bone: maximum diameter1.32.64.00.5-2.0-1.91.6
Bone: maximum force0.20.40.8-0.2-0.9-0.60.6
Bone: maximum moment0.30.50.9-0.3-1.0-0.70.7
Mean time between licks in bursts0.00.20.8-0.90.20.1-0.1
Mean num. licks in bursts0.72.02.9-1.31.31.7-1.2
Cd content in liver0.70.81.30.6-0.7-1.11.0
Co content in liver1.11.31.5-1.21.21.1-1.0
Cu content in liver1.31.52.71.3-0.6-1.21.6
Fe content in liver2.22.74.02.0-1.8-1.61.1
K content in liver0.80.81.9-1.40.60.7-0.6
Mg content in liver0.00.00.0-0.20.20.00.1
Mn content in liver1.11.31.8-1.00.71.3-1.4
Na content in liver0.10.10.3-0.50.1-0.1-0.1
Rb content in liver0.10.10.20.5-0.3-0.40.1
Se content in liver0.20.30.60.2-0.8-0.40.4
Sr content in liver0.70.61.5-1.20.20.8-0.6
Zn content in liver0.60.71.00.8-0.7-0.81.0
Bone: minimum diameter0.40.71.20.2-1.0-1.10.9
Time in familiar zone, hab. session 10.30.30.6-0.8-0.6-0.3-0.1
Time in novel zone, hab. session 10.80.91.31.1-0.7-1.00.9
Total zone transitions, hab. session 10.40.61.10.3-1.0-1.00.6
Total locomotion distance, hab. session 10.10.20.7-0.80.1-0.10.2
Locomotion velocity, hab. session 10.10.20.6-0.70.50.20.1
Time in familiar zone, hab. session 21.41.51.81.0-1.3-1.31.3
Time in novel zone, hab. session 20.00.00.0-0.00.2-0.0-0.0
Total zone transitions, hab. session 20.10.20.3-0.5-0.6-0.30.1
Total locomotion distance, hab. session 20.10.20.3-0.60.50.3-0.1
Locomotion velocity, hab. session 20.20.20.6-0.80.40.3-0.3
Novel to familiar place preference ratio0.91.21.90.7-1.4-1.11.0
Novelty place preference0.81.01.50.8-1.2-1.10.8
Time in novel zone, NPP test1.31.52.21.1-1.5-1.31.1
Total zone transitions, NPP test0.10.10.3-0.0-0.5-0.50.3
Total locomotion distance, NPP test0.91.31.90.7-1.1-1.41.3
Locomotion velocity, NPP test0.50.71.20.3-0.8-1.11.0
Intraocular pressure0.81.41.61.3-1.0-1.31.1
Delta distance traveled before/after self-admin1.11.22.50.11.60.9-1.2
Delta ambulatory time before/after self-admin0.30.61.2-0.01.10.5-0.9
Parametrial fat weight0.30.83.0-1.7-0.3-0.20.4
Pavlov. Cond. lever latency0.60.71.01.0-0.4-1.00.9
Pavlov. Cond. magazine entry latency0.30.40.6-0.0-0.8-0.70.6
Pavlov. Cond. change in total contacts1.92.02.8-1.71.21.4-1.4
Pavlov. Cond. index score0.30.40.9-1.00.10.5-0.5
Pavlov. Cond. latency score0.81.02.0-1.40.50.9-1.0
Pavlov. Cond. lever contacts0.30.40.5-0.70.30.7-0.6
Pavlov. Cond. magazine entry number0.10.10.20.50.30.4-0.1
Pavlov. Cond. intertrial magazine entries0.20.30.6-0.50.20.8-0.6
Pavlov. Cond. lever-magazine prob. diff.0.20.30.6-0.80.10.5-0.4
Pavlov. Cond. response bias0.30.40.70.3-0.8-0.60.6
Pavlov. Cond. lever latency0.20.30.80.90.40.60.0
Pavlov. Cond. magazine entry latency2.12.93.71.5-1.9-1.81.5
Pavlov. Cond. change in total contacts0.20.41.0-0.2-0.6-1.00.6
Pavlov. Cond. index score0.91.42.30.6-1.3-1.51.1
Pavlov. Cond. latency score0.71.01.90.5-1.1-1.40.9
Pavlov. Cond. lever contacts0.40.51.0-0.5-0.8-1.00.4
Pavlov. Cond. magazine entry number1.92.52.9-1.51.61.7-1.5
Pavlov. Cond. intertrial magazine entries1.02.33.2-1.01.61.8-1.6
Pavlov. Cond. lever-magazine prob. diff.1.01.62.40.8-1.4-1.51.2
Pavlov. Cond. response bias0.30.50.9-0.1-0.9-1.00.5
Time in closed arm before self-admin0.61.02.11.4-1.1-0.30.7
Time in closed arm after self-admin1.82.16.92.6-0.3-0.90.7
Time in open arm before self-admin4.25.119.7-4.40.50.50.4
Time in open arm after self-admin4.04.411.5-3.41.61.2-1.5
Bone: periosteal estimation0.20.50.90.1-0.9-0.80.7
Bone: periosteal perimeter0.30.60.8-0.0-0.9-0.90.9
Bone: post-yield work0.10.20.3-0.30.60.5-0.5
Progressive ratio test 1 active lever presses0.20.41.00.9-1.00.1-0.0
Progressive ratio test 1 breakpoint0.20.30.80.6-0.90.2-0.2
Progressive ratio test 1 inactive lever presses1.74.413.63.7-1.3-0.81.3
Progressive ratio test 2 active lever presses2.94.18.62.9-1.7-1.61.5
Progressive ratio test 2 breakpoint3.64.710.13.2-1.8-1.71.6
Progressive ratio test 2 inactive lever presses0.31.02.61.6-0.8-0.80.5
Incentive Sensitization - Responses2.98.018.64.3-1.8-2.32.2
Incentive Sensitization - Breakpoint3.58.019.14.4-1.7-2.42.1
Sum of active levers in priming session hrs 5-62.01.92.61.01.51.2-1.6
Progressive ratio0.10.30.50.50.70.7-0.4
Food seeking constrained by brief footshock13.216.431.5-5.63.03.7-3.5
Seeking ratio, punishment vs. effort1.63.68.1-2.81.41.3-1.6
Retroperitoneal fat weight0.10.60.80.9-0.5-0.90.8
Reaction time number correct1.96.69.81.5-3.1-2.33.0
Reaction time mean minus median0.00.10.30.5-0.20.3-0.0
Reaction time mean minus median AUC0.21.33.01.7-1.0-0.61.0
Reaction time num false alarms1.72.96.60.7-2.6-1.51.5
Reaction time num false alarms AUC0.92.15.50.2-2.3-1.11.4
Reaction time trials correct on left1.96.69.81.5-3.1-2.33.0
Reaction time trials on left1.96.69.81.5-3.1-2.33.0
Reaction time mean0.20.50.60.60.80.7-0.8
Reaction time mean AUC0.20.50.70.30.70.9-0.8
Median of all reaction times0.50.71.20.41.10.8-1.0
Reaction time omissions0.00.00.00.2-0.1-0.10.2
Reaction time false alarm rate0.20.20.5-0.7-0.30.3-0.4
Reaction time premature initiation rate0.50.71.30.51.20.5-1.0
Reaction time premature initiations0.20.71.81.3-0.5-0.70.7
Std. dev. reaction times0.10.20.30.60.20.6-0.4
Reaction time trials completed1.96.69.81.5-3.1-2.33.0
Reaction time trials AUC2.27.511.31.7-3.4-2.53.1
Run reversals in cocaine runway, females0.10.10.30.50.2-0.10.4
Run reversals in cocaine runway, males0.30.30.70.8-0.3-0.40.5
Latency to leave start box in cocaine runway0.91.21.61.3-1.1-1.10.9
Latency to leave start box in cocaine runway, F0.81.01.30.7-1.1-1.01.1
Latency to leave start box in cocaine runway, M0.70.72.31.5-0.4-0.60.0
Std. dev. time between licks in bursts0.30.51.7-1.3-0.10.3-0.6
Total sessions with >9 infusions2.42.98.73.0-1.2-0.90.8
Short access day 1 total inactive lever presses2.34.614.93.9-0.5-1.51.0
Short access day 10 total inactive lever presses0.10.40.60.70.80.20.5
Short access day 1 total infusions1.22.37.82.8-0.8-0.60.6
Short access day 10 total infusions1.62.65.92.4-1.7-0.51.2
Short access total infusions1.21.85.02.2-1.1-0.40.7
Short access day 1 locomotion2.33.88.42.9-1.5-1.51.5
Short access day 10 total locomotion0.10.41.2-1.10.10.7-0.0
Short access total locomotion0.10.10.3-0.1-0.10.5-0.5
One hour access (0.3 mA shock)2.32.79.53.1-0.3-1.10.1
Compulsive drug intake0.50.71.61.30.5-0.1-1.0
One hour access (shock baseline)1.43.89.63.1-1.4-1.51.1
Social response proportion0.50.71.40.9-1.2-0.50.7
Social responses0.10.10.20.4-0.40.0-0.3
Social time1.32.02.9-1.31.71.3-1.3
Soleus weight1.75.07.21.7-2.0-2.52.7
Bone: stiffness1.01.82.30.9-1.5-1.31.5
Tibialis anterior weight4.515.416.93.4-4.1-4.14.1
Time to tail flick, vehicle, before self-admin0.40.41.0-1.0-0.80.2-0.2
Time to tail flick, vehicle, after self-admin0.71.42.31.5-1.0-1.40.8
Time to tail flick, test, before self-admin4.45.09.7-3.11.62.1-1.9
Time to tail flick, test, after self-admin0.70.81.4-0.90.51.2-0.7
Delta time to tail flick, vehicle, before/after SA0.60.71.31.1-0.5-0.70.8
Delta time to tail flick, test, before/after SA1.21.41.91.4-1.3-0.91.2
Tibia length0.10.20.50.7-0.30.2-0.1
Ambulatory time before self-admin0.10.20.5-0.3-0.40.10.7
Ambulatory time after self-admin0.30.50.8-0.30.80.9-0.7
Bone: tissue strength2.02.15.7-2.40.81.2-0.9
Total heroin consumption0.50.61.1-0.80.41.0-0.8
Bone: trabecular number0.10.10.3-0.60.10.2-0.3
Bone: trabecular spacing0.00.10.1-0.2-0.2-0.30.3
Bone: trabecular thickness0.91.31.61.0-1.3-1.21.2
Bone: trabecular tissue density2.23.86.72.6-1.2-1.62.1
Water consumed over 24 hours0.50.91.5-0.50.81.1-1.2
Number of responses in last shaping day4.15.314.33.8-1.7-1.61.2