LOC120095828

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC120095828 0.03 0.02 6.3e-04 0 0.01 0.01 0.01 4.6e-02 5.8e-03 1.6e-02 2.2e-02
2 Brain gene expression LOC120095828 0.17 0.11 5.8e-06 0.09 0.07 0.08 0.09 2.2e-08 7.5e-07 4.3e-08 1.0e-08
3 PL gene expression LOC120095828 0.03 0.02 8.4e-03 0.02 0.02 0.01 0.02 5.9e-03 6.9e-03 1.5e-02 5.8e-03
4 BLA gene expression LOC120095828 0.08 0.05 1.8e-03 0.06 0.04 0.04 0.04 2.8e-04 3.9e-03 2.9e-03 2.3e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density8.716.019.2-4.0-4.4-3.93.8
Area under the delay curve0.81.21.91.41.00.9-1.0
BMI with tail3.311.613.3-3.4-3.6-3.23.3
BMI without tail0.52.46.6-2.6-1.5-0.60.4
Body weight12.253.275.0-8.7-7.4-6.76.2
Weight adjusted by age0.61.62.7-1.6-1.4-1.30.5
Bone surface7.614.916.9-4.0-4.1-3.73.6
Bone volume7.414.717.8-3.4-4.2-3.93.8
Breakpoint value in progressive ratio session0.10.20.4-0.00.60.4-0.5
Number of licking bursts0.31.02.3-1.5-1.0-0.70.2
Context. condit. distance diff. score2.32.84.0-1.6-1.5-1.52.0
Locomotion velocity, session 11.11.32.40.61.61.3-0.8
Locomotion distance, session 11.01.31.91.01.11.1-1.4
Locomotion velocity, session 20.30.40.80.00.70.9-0.5
Locomotion distance, session 20.71.01.90.40.91.0-1.4
Locomotion velocity, session 30.70.81.7-0.6-0.8-1.30.8
Locomotion distance, session 30.00.10.20.2-0.0-0.2-0.4
Stereotopy head waving bouts, day 30.20.31.0-1.0-0.20.1-0.2
Stereotopy head waving duration, day 30.00.10.10.20.20.3-0.3
Locomotion velocity, session 70.20.20.80.90.3-0.1-0.3
Locomotion distance, session 70.10.10.30.60.2-0.1-0.3
Stereotopy head waving bouts, day 72.52.93.71.51.91.7-1.8
Stereotopy head waving duration, day 71.62.02.81.41.71.3-1.2
Locomotion velocity, session 80.40.50.70.40.80.8-0.6
Locomotion distance, session 80.71.01.8-1.3-0.9-0.71.0
Degree of sensitization distance0.50.60.70.80.90.8-0.5
Degree of sensitization stereotypy2.22.43.51.61.91.4-1.2
Conditioned locomotion0.10.10.1-0.3-0.10.2-0.3
Cocaine response after cond. corrected0.40.51.01.00.70.6-0.5
Cocaine response after cond. not corrected0.40.61.11.00.80.7-0.5
Cocaine response before conditioning0.10.10.2-0.4-0.3-0.20.4
Saline control response0.50.62.2-1.5-0.40.4-0.2
Bone: connectivity density9.214.618.7-4.3-4.1-3.43.4
Bone: cortical apparent density0.00.10.20.3-0.0-0.20.4
Bone: cortical area2.74.45.2-2.0-2.3-2.12.0
Bone: cortical porosity1.61.72.31.01.51.5-1.2
Bone: cortical porosity1.82.02.41.31.61.6-1.2
Bone: cortical thickness2.23.64.0-1.9-2.0-1.91.8
Bone: cortical thickness0.10.10.3-0.5-0.3-0.1-0.4
Bone: cortical tissue density0.00.10.10.30.1-0.10.3
Condit. Reinf. active minus inactive responses1.51.72.2-0.9-1.5-1.51.3
Condit. Reinf. active-inactive response ratio1.21.31.8-0.7-1.3-1.31.1
Condit. Reinf. active responses0.20.20.4-0.4-0.5-0.60.3
Condit. Reinf. inactive responses0.81.11.40.81.20.9-1.2
Incentive salience index mean0.20.30.5-0.3-0.7-0.60.4
Condit. Reinf. lever presses0.40.50.60.70.60.8-0.8
Condit. Reinf. active minus inactive responses0.20.30.5-0.30.50.6-0.7
Condit. Reinf. active-inactive response ratio0.40.71.00.20.91.0-1.0
Condit. Reinf. active responses0.10.20.6-0.8-0.1-0.1-0.2
Condit. Reinf. inactive responses0.40.60.8-0.8-0.8-0.90.5
Condit. Reinf. lever presses0.60.81.2-0.9-1.0-1.10.5
Condit. Reinf. lever reinforcers received0.10.20.6-0.8-0.2-0.2-0.1
Conditioned reinforcement - actives0.10.51.5-1.2-0.10.20.5
Conditioned reinforcement - inactives0.10.20.20.40.40.4-0.2
Conditioned locomotion0.30.40.8-0.90.10.70.6
Patch foraging indifference point 0 sec1.64.46.0-1.8-2.4-2.31.8
Patch foraging indifference point AUC0.30.81.8-1.3-1.0-0.60.4
Delay disc. indifference point, 0s delay0.40.40.9-0.2-0.5-0.90.7
Delay disc. indifference point, 16s delay0.30.51.01.00.70.5-0.5
Delay disc. indifference point, 2s delay1.31.53.31.81.10.9-0.7
Delay disc. indifference point, 24s delay0.61.01.61.30.70.9-1.1
Delay disc. indifference point, 4s delay1.21.32.11.51.10.9-1.0
Delay disc. indifference point, 8s delay0.10.20.30.50.20.3-0.6
Indifference point function ln k0.10.30.6-0.5-0.3-0.50.8
Indifference point function log k0.10.30.6-0.5-0.3-0.50.8
Patch foraging total patch changes 0 sec1.54.46.0-1.8-2.4-2.31.8
Patch foraging total patch changes 12 sec3.54.76.3-1.9-2.5-2.31.9
Patch foraging total patch changes 18 sec0.41.01.9-0.9-1.4-0.90.7
Patch foraging total patch changes 24 sec0.41.32.4-1.1-1.6-1.20.3
Patch foraging total patch changes 6 sec0.81.42.5-1.2-1.6-1.00.5
Patch foraging time to switch 0 sec0.72.85.42.31.91.1-1.1
Patch foraging water rate 0 sec1.45.39.2-3.0-2.4-1.81.7
Patch foraging water rate 12 sec0.41.42.6-1.6-1.3-1.00.8
Patch foraging water rate 18 sec0.30.71.20.10.80.9-1.1
Patch foraging water rate 24 sec0.81.13.7-1.9-0.7-0.10.2
Patch foraging water rate 6 sec1.82.73.4-1.8-1.6-1.51.6
Seeking ratio, delayed vs. immediate footshock1.11.62.01.41.41.2-0.9
Distance traveled before self-admin0.20.31.01.00.50.2-0.2
Distance traveled after self-admin0.10.10.3-0.0-0.4-0.5-0.3
Extensor digitorum longus weight2.610.414.5-3.8-3.3-2.82.9
Bone: elastic displacement1.11.42.50.51.21.6-1.2
Bone: elastic work1.62.14.9-2.2-1.5-0.80.9
Bone: endosteal estimation0.61.32.4-1.5-1.2-0.90.8
Bone: endosteal perimeter1.22.93.9-1.8-2.0-1.61.3
Epididymis fat weight1.15.89.3-2.0-2.3-2.13.0
Delta time in closed arm before/after self-admin0.30.30.5-0.6-0.6-0.10.7
Delta time in open arm before/after self-admin4.25.07.32.72.41.6-2.1
Diff in mean of infusions in LGA sessions0.00.00.00.00.1-0.1-0.2
Delay discount exponential model param1.41.92.9-1.7-1.2-1.21.3
Extinction: sum of active levers before priming1.01.52.7-0.8-1.5-1.60.9
Active lever presses in extinction session 62.82.84.2-1.5-1.6-2.01.5
Bone: final force1.32.23.6-1.9-1.7-1.20.8
Bone: final moment1.21.93.1-1.8-1.6-1.20.7
Food consumed during 24 hour testing period1.02.02.90.81.71.7-1.3
Glucose0.20.30.91.00.6-0.00.1
Heart weight0.61.01.5-1.2-1.0-0.90.9
Delay discount hyperbolic model param1.21.62.5-1.6-1.1-1.11.2
Intermittent access intake day 1-15 change0.00.20.5-0.7-0.3-0.60.0
Intermittent access intake escalation0.10.30.5-0.6-0.4-0.70.2
Intermittent access intake escalation 20.00.00.10.0-0.1-0.30.2
Intermitt. access day 1 inactive lever presses0.00.10.2-0.3-0.0-0.50.1
Intermitt. access day 15 inactive lever presses0.10.51.81.30.50.3-0.1
Intermitt. access escalation Index0.00.10.3-0.2-0.1-0.30.6
Intermittent access day 1 total infusions1.33.95.41.62.22.3-1.6
Intermittent access day 15 total infusions0.41.11.90.81.41.1-0.7
Intermittent access terminal intake (last 3 days)0.91.62.71.11.61.5-0.6
Intermittent access total infusions1.82.13.41.31.91.7-0.7
Intermittent access day 1 locomotion1.11.92.91.31.71.7-0.5
Intermittent access day 15 total locomotion0.62.33.11.11.71.8-1.4
Intermittent access total locomotion1.61.92.71.31.61.5-1.0
Intermittent access standard deviation0.00.10.10.20.30.30.1
Left kidney weight5.342.257.5-7.6-6.7-5.85.7
Right kidney weight5.638.950.7-7.1-6.3-5.55.9
Cocaine induced anxiety0.10.20.30.50.50.5-0.4
Post-drug Anxiety2.32.64.52.11.81.3-1.0
Baseline Anxiety0.81.43.41.81.30.70.0
Tail length1.58.022.4-4.7-2.4-1.71.1
Length with tail8.437.166.7-8.2-5.8-5.24.6
Length without tail8.343.551.3-7.2-6.6-6.56.1
Times rat made contact with spout0.20.20.9-1.0-0.2-0.1-0.0
Lifetime Intake1.92.43.71.51.91.7-0.7
Liver weight, left6.310.812.4-3.5-3.5-3.13.0
Liver weight, right4.47.811.3-3.4-2.9-2.52.3
Locomotor activity0.71.02.6-1.6-1.0-0.60.4
Locomotor testing distance0.41.11.8-1.3-1.1-0.90.6
Locomotor testing rearing0.00.10.2-0.1-0.5-0.20.0
Locomotion in novel chamber1.52.03.4-0.21.31.8-1.8
Locomotion in novel chamber post-restriction0.41.12.0-0.70.81.1-1.4
Fecal boli incidents, locomotor time 10.61.52.7-1.6-0.7-0.91.3
Change in fecal boli incidents, locomotor task0.60.60.91.00.60.8-0.8
Time >=10cm from walls, locomotor time 10.20.20.70.90.0-0.20.2
Bouts of movement, locomotor time 10.40.51.1-1.1-0.9-0.1-0.4
Total resting periods, locomotor time 10.50.61.2-1.1-1.0-0.2-0.4
Rest time, locomotor task time 10.50.82.0-0.60.50.9-1.4
Distance moved, locomotor task time 10.10.41.20.0-0.3-0.41.1
Vertical activity count, locomotor time 10.21.62.5-1.0-1.3-1.11.6
Time >=10cm from walls, locomotor time 20.41.21.6-0.8-1.2-1.31.1
Bouts of movement, locomotor time 21.34.46.2-2.0-2.5-2.21.5
Total resting periods, locomotor time 21.14.36.1-2.0-2.5-2.21.4
Rest time, locomotor task time 20.50.91.90.70.90.6-1.4
Distance moved, locomotor task time 20.70.91.4-1.1-1.2-0.60.8
Vertical activity count, locomotor time 21.02.43.9-2.0-1.7-1.11.3
Light reinforcement 10.31.32.91.71.00.9-0.8
Light reinforcement 20.10.30.70.80.50.5-0.2
Bone: marrow area0.51.22.2-1.5-1.2-0.90.7
Bone: maximum diameter1.73.44.3-1.9-2.1-1.81.6
Bone: maximum force1.63.24.4-2.0-2.1-1.71.2
Bone: maximum moment1.52.94.0-1.9-2.0-1.71.1
Mean time between licks in bursts0.31.61.91.41.41.3-1.0
Mean num. licks in bursts0.20.60.80.90.90.8-0.5
Cd content in liver0.91.01.40.31.11.2-1.1
Co content in liver2.83.23.91.22.01.9-2.0
Cu content in liver0.80.91.2-0.9-0.9-1.01.1
Fe content in liver8.210.111.6-2.8-3.2-3.43.2
K content in liver0.30.30.30.60.50.5-0.5
Mg content in liver0.80.91.10.81.01.0-0.9
Mn content in liver0.20.20.40.40.60.4-0.2
Na content in liver0.40.50.6-0.7-0.6-0.70.7
Rb content in liver1.41.63.61.91.01.1-0.9
Se content in liver1.11.42.3-0.8-1.1-1.21.5
Sr content in liver0.20.20.6-0.8-0.3-0.10.1
Zn content in liver2.02.44.5-2.1-1.3-1.11.4
Bone: minimum diameter0.00.00.00.2-0.1-0.1-0.1
Time in familiar zone, hab. session 10.40.50.9-0.3-0.8-0.90.6
Time in novel zone, hab. session 10.40.40.7-0.8-0.5-0.50.6
Total zone transitions, hab. session 12.02.83.41.11.81.9-1.8
Total locomotion distance, hab. session 11.11.52.21.31.11.1-1.5
Locomotion velocity, hab. session 13.04.34.92.22.01.9-2.1
Time in familiar zone, hab. session 21.82.13.7-0.7-1.2-1.91.6
Time in novel zone, hab. session 21.71.92.91.01.31.7-1.4
Total zone transitions, hab. session 21.21.52.50.31.31.6-1.4
Total locomotion distance, hab. session 22.53.34.41.51.71.9-2.1
Locomotion velocity, hab. session 22.73.64.91.51.72.1-2.2
Novel to familiar place preference ratio0.40.50.90.70.90.7-0.4
Novelty place preference0.20.30.60.70.70.5-0.1
Time in novel zone, NPP test0.10.10.20.40.50.20.1
Total zone transitions, NPP test0.20.30.7-0.20.30.8-0.7
Total locomotion distance, NPP test1.62.22.91.31.21.6-1.7
Locomotion velocity, NPP test2.13.04.51.31.51.9-2.1
Intraocular pressure0.40.71.1-0.9-0.7-0.61.0
Delta distance traveled before/after self-admin0.20.20.4-0.7-0.5-0.2-0.3
Delta ambulatory time before/after self-admin0.10.10.2-0.2-0.4-0.3-0.4
Parametrial fat weight0.81.92.9-1.1-1.3-1.71.4
Pavlov. Cond. lever latency5.06.36.9-2.4-2.5-2.62.5
Pavlov. Cond. magazine entry latency0.91.21.80.31.11.4-1.3
Pavlov. Cond. change in total contacts0.90.91.00.91.00.9-1.0
Pavlov. Cond. index score2.02.53.31.21.61.8-1.7
Pavlov. Cond. latency score2.73.54.31.41.82.1-2.0
Pavlov. Cond. lever contacts5.36.46.92.42.52.6-2.6
Pavlov. Cond. magazine entry number0.70.91.4-0.3-1.0-1.21.0
Pavlov. Cond. intertrial magazine entries0.10.20.4-0.0-0.5-0.70.2
Pavlov. Cond. lever-magazine prob. diff.1.92.43.31.21.61.8-1.6
Pavlov. Cond. response bias1.72.13.10.91.51.7-1.5
Pavlov. Cond. lever latency0.00.10.2-0.2-0.2-0.20.4
Pavlov. Cond. magazine entry latency0.50.71.51.20.90.8-0.2
Pavlov. Cond. change in total contacts0.00.10.2-0.4-0.1-0.20.3
Pavlov. Cond. index score0.20.30.40.60.60.5-0.5
Pavlov. Cond. latency score0.20.30.40.60.60.5-0.4
Pavlov. Cond. lever contacts0.10.10.30.40.20.2-0.5
Pavlov. Cond. magazine entry number0.40.51.1-1.0-0.7-0.50.3
Pavlov. Cond. intertrial magazine entries0.10.20.8-0.9-0.3-0.2-0.3
Pavlov. Cond. lever-magazine prob. diff.0.20.30.30.60.60.5-0.4
Pavlov. Cond. response bias0.30.40.70.90.50.5-0.7
Time in closed arm before self-admin0.71.12.9-1.7-0.7-0.31.0
Time in closed arm after self-admin2.52.85.3-2.3-1.3-0.81.9
Time in open arm before self-admin0.20.30.6-0.3-0.8-0.70.1
Time in open arm after self-admin3.13.45.12.21.61.1-2.3
Bone: periosteal estimation1.33.14.0-2.0-1.9-1.61.5
Bone: periosteal perimeter2.14.25.8-1.8-2.4-2.21.8
Bone: post-yield work0.40.71.2-0.6-1.0-1.10.5
Progressive ratio test 1 active lever presses0.10.20.5-0.40.60.70.1
Progressive ratio test 1 breakpoint0.10.20.5-0.30.60.70.1
Progressive ratio test 1 inactive lever presses0.10.30.40.30.60.6-0.6
Progressive ratio test 2 active lever presses0.50.71.6-0.21.11.3-0.1
Progressive ratio test 2 breakpoint0.60.71.6-0.11.11.3-0.1
Progressive ratio test 2 inactive lever presses0.10.30.6-0.80.40.5-0.2
Incentive Sensitization - Responses0.51.52.21.01.51.4-0.8
Incentive Sensitization - Breakpoint0.61.52.21.01.51.4-0.8
Sum of active levers in priming session hrs 5-61.11.01.8-0.7-1.2-1.40.6
Progressive ratio0.30.91.81.30.90.7-0.5
Food seeking constrained by brief footshock0.40.41.5-0.2-0.4-0.21.2
Seeking ratio, punishment vs. effort0.71.53.1-1.7-0.9-0.51.3
Retroperitoneal fat weight1.98.411.1-1.9-2.8-3.33.3
Reaction time number correct0.51.62.3-1.5-1.5-1.20.8
Reaction time mean minus median0.63.84.91.72.22.0-1.9
Reaction time mean minus median AUC0.64.24.82.12.22.1-1.9
Reaction time num false alarms0.30.51.20.40.91.1-0.3
Reaction time num false alarms AUC0.00.10.30.00.30.60.1
Reaction time trials correct on left0.51.62.3-1.5-1.5-1.20.8
Reaction time trials on left0.41.52.1-1.5-1.4-1.10.7
Reaction time mean3.78.111.03.33.22.5-2.2
Reaction time mean AUC3.27.710.53.23.12.5-2.1
Median of all reaction times4.57.011.03.32.92.2-2.0
Reaction time omissions0.81.31.91.41.31.0-0.8
Reaction time false alarm rate0.30.50.80.60.80.9-0.1
Reaction time premature initiation rate5.07.710.12.23.13.2-2.5
Reaction time premature initiations1.23.75.21.32.02.3-1.9
Std. dev. reaction times1.65.36.92.32.62.3-2.0
Reaction time trials completed0.41.52.1-1.5-1.4-1.10.7
Reaction time trials AUC0.51.62.2-1.5-1.4-1.20.9
Run reversals in cocaine runway, females1.41.52.61.61.01.0-1.3
Run reversals in cocaine runway, males1.11.21.8-1.1-1.3-1.10.7
Latency to leave start box in cocaine runway1.01.43.3-0.3-1.0-1.81.1
Latency to leave start box in cocaine runway, F1.51.93.3-0.7-1.2-1.81.6
Latency to leave start box in cocaine runway, M0.40.31.0-0.3-0.6-1.0-0.1
Std. dev. time between licks in bursts0.10.10.30.00.50.60.0
Total sessions with >9 infusions0.30.40.80.90.80.50.2
Short access day 1 total inactive lever presses0.10.20.4-0.30.30.10.7
Short access day 10 total inactive lever presses0.00.00.1-0.20.1-0.20.1
Short access day 1 total infusions0.30.61.31.11.00.5-0.3
Short access day 10 total infusions0.81.32.11.31.51.0-0.5
Short access total infusions1.31.92.71.61.61.3-0.8
Short access day 1 locomotion0.61.01.61.11.30.9-0.4
Short access day 10 total locomotion0.10.41.4-0.2-0.0-0.21.2
Short access total locomotion0.60.81.31.11.20.90.0
One hour access (0.3 mA shock)2.32.84.90.71.82.2-1.6
Compulsive drug intake0.81.21.91.40.71.0-1.2
One hour access (shock baseline)0.10.40.8-0.30.70.9-0.3
Social response proportion0.30.41.3-1.1-0.5-0.1-0.1
Social responses0.20.20.6-0.30.20.5-0.8
Social time0.91.42.71.61.10.9-1.0
Soleus weight1.54.34.6-2.1-2.1-2.02.1
Bone: stiffness0.40.81.1-0.9-1.0-1.00.6
Tibialis anterior weight2.89.717.3-4.2-3.0-2.42.6
Time to tail flick, vehicle, before self-admin0.10.10.40.20.70.2-0.0
Time to tail flick, vehicle, after self-admin1.12.33.1-1.1-1.6-1.81.5
Time to tail flick, test, before self-admin2.32.63.8-2.0-1.5-1.31.7
Time to tail flick, test, after self-admin0.50.61.90.20.1-0.61.4
Delta time to tail flick, vehicle, before/after SA2.52.74.0-0.7-1.9-2.01.6
Delta time to tail flick, test, before/after SA1.01.22.31.51.20.7-0.7
Tibia length4.111.315.7-4.0-3.6-3.02.8
Ambulatory time before self-admin0.10.20.40.60.40.1-0.2
Ambulatory time after self-admin0.00.10.1-0.0-0.2-0.4-0.2
Bone: tissue strength1.31.31.7-1.2-1.1-1.01.3
Total heroin consumption2.22.64.12.01.71.1-1.5
Bone: trabecular number7.113.316.2-3.8-4.0-3.43.3
Bone: trabecular spacing1.01.53.01.71.40.8-0.6
Bone: trabecular thickness5.77.99.5-2.8-3.1-2.82.7
Bone: trabecular tissue density0.20.30.60.40.1-0.60.7
Water consumed over 24 hours0.20.41.4-1.2-0.40.0-0.2
Number of responses in last shaping day0.00.00.10.1-0.0-0.10.3