LOC120095311

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC120095311 0.05 0.04 3.7e-05 0.06 0.05 0.06 0.06 2.8e-06 1.2e-05 3.4e-06 3.1e-06
2 Adipose gene expression LOC120095311 0.04 0.03 2.5e-04 0.04 0.03 0.03 0.03 8.3e-05 1.6e-04 4.7e-04 9.5e-05
3 NAcc gene expression LOC120095311 0.13 0.16 3.4e-04 0.02 0.03 0.02 0.02 3.0e-03 2.6e-04 4.8e-03 2.1e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.40.50.50.6-0.7
Area under the delay curve2.42.52.9-1.6-1.41.7
BMI with tail0.62.02.31.41.5-1.3
BMI without tail6.112.513.23.53.6-3.5
Body weight5.121.522.84.74.8-4.4
Weight adjusted by age3.13.64.82.12.2-1.1
Bone surface0.40.71.10.60.7-1.1
Bone volume0.30.60.70.70.8-0.9
Breakpoint value in progressive ratio session0.40.50.91.00.40.5
Number of licking bursts0.60.81.50.80.5-1.2
Context. condit. distance diff. score0.81.01.50.71.0-1.2
Locomotion velocity, session 14.04.34.9-2.0-2.02.2
Locomotion distance, session 12.32.93.4-1.8-1.81.4
Locomotion velocity, session 25.66.57.4-2.7-2.72.2
Locomotion distance, session 20.20.30.4-0.6-0.60.3
Locomotion velocity, session 32.42.83.3-1.5-1.71.8
Locomotion distance, session 33.94.34.3-2.1-2.12.1
Stereotopy head waving bouts, day 30.60.70.9-0.7-1.00.8
Stereotopy head waving duration, day 30.30.30.5-0.5-0.70.5
Locomotion velocity, session 70.80.81.0-1.0-0.90.9
Locomotion distance, session 72.33.03.7-1.9-1.71.5
Stereotopy head waving bouts, day 70.20.20.30.60.5-0.4
Stereotopy head waving duration, day 70.60.80.90.90.7-1.0
Locomotion velocity, session 80.20.20.3-0.6-0.60.2
Locomotion distance, session 80.40.61.20.50.6-1.1
Degree of sensitization distance0.90.91.20.80.9-1.1
Degree of sensitization stereotypy0.60.60.80.90.8-0.6
Conditioned locomotion5.76.67.22.52.5-2.7
Cocaine response after cond. corrected0.50.51.3-0.4-0.41.1
Cocaine response after cond. not corrected1.21.32.0-0.9-1.11.4
Cocaine response before conditioning0.50.61.0-0.9-1.00.3
Saline control response3.84.95.12.32.2-2.2
Bone: connectivity density0.20.20.7-0.10.1-0.8
Bone: cortical apparent density3.54.65.1-2.1-2.12.3
Bone: cortical area7.010.511.63.43.4-2.9
Bone: cortical porosity0.30.30.40.60.60.4
Bone: cortical porosity0.40.50.70.80.90.1
Bone: cortical thickness4.98.19.23.03.0-2.4
Bone: cortical thickness1.61.82.41.61.5-0.9
Bone: cortical tissue density4.05.35.9-2.3-2.22.4
Condit. Reinf. active minus inactive responses2.63.03.31.81.8-1.5
Condit. Reinf. active-inactive response ratio1.11.21.51.21.2-0.8
Condit. Reinf. active responses5.06.26.52.52.5-2.4
Condit. Reinf. inactive responses1.21.51.51.21.2-1.2
Incentive salience index mean2.53.13.31.81.7-1.7
Condit. Reinf. lever presses0.20.30.50.50.3-0.7
Condit. Reinf. active minus inactive responses1.21.51.61.31.2-1.3
Condit. Reinf. active-inactive response ratio2.42.52.81.71.6-1.5
Condit. Reinf. active responses0.30.40.50.70.6-0.5
Condit. Reinf. inactive responses0.50.60.8-0.6-0.70.9
Condit. Reinf. lever presses0.20.30.60.70.6-0.2
Condit. Reinf. lever reinforcers received0.20.30.60.70.6-0.3
Conditioned reinforcement - actives0.80.80.90.90.9-1.0
Conditioned reinforcement - inactives1.51.62.31.41.5-0.8
Conditioned locomotion0.70.81.11.10.8-0.8
Patch foraging indifference point 0 sec0.10.20.30.60.4-0.1
Patch foraging indifference point AUC0.00.00.00.10.00.0
Delay disc. indifference point, 0s delay0.00.00.10.20.20.1
Delay disc. indifference point, 16s delay1.41.41.6-1.3-1.01.3
Delay disc. indifference point, 2s delay0.50.61.1-0.6-0.61.1
Delay disc. indifference point, 24s delay7.26.97.9-2.7-2.42.8
Delay disc. indifference point, 4s delay0.60.60.8-0.7-0.90.7
Delay disc. indifference point, 8s delay1.81.92.1-1.4-1.21.5
Indifference point function ln k0.91.21.4-1.2-1.11.1
Indifference point function log k0.91.21.4-1.2-1.11.1
Patch foraging total patch changes 0 sec0.10.20.30.60.50.1
Patch foraging total patch changes 12 sec0.00.00.10.20.00.3
Patch foraging total patch changes 18 sec0.00.10.10.0-0.20.4
Patch foraging total patch changes 24 sec1.01.22.01.41.2-0.6
Patch foraging total patch changes 6 sec0.50.71.41.20.7-0.5
Patch foraging time to switch 0 sec0.71.11.3-1.2-1.10.9
Patch foraging water rate 0 sec3.25.26.42.52.5-1.7
Patch foraging water rate 12 sec0.40.60.80.80.9-0.6
Patch foraging water rate 18 sec1.52.12.51.61.3-1.4
Patch foraging water rate 24 sec3.04.25.62.42.1-1.5
Patch foraging water rate 6 sec0.30.40.50.60.6-0.7
Seeking ratio, delayed vs. immediate footshock1.51.82.31.31.2-1.5
Distance traveled before self-admin0.60.71.10.91.0-0.3
Distance traveled after self-admin0.60.70.80.90.8-0.7
Extensor digitorum longus weight0.10.30.50.30.6-0.7
Bone: elastic displacement1.51.72.61.61.2-0.9
Bone: elastic work5.87.510.33.22.9-1.9
Bone: endosteal estimation0.00.10.10.20.2-0.3
Bone: endosteal perimeter0.81.71.81.31.4-1.3
Epididymis fat weight1.74.14.12.02.0-2.0
Delta time in closed arm before/after self-admin0.30.30.70.30.1-0.9
Delta time in open arm before/after self-admin0.20.20.20.50.50.2
Diff in mean of infusions in LGA sessions0.10.10.3-0.1-0.30.6
Delay discount exponential model param3.53.74.32.01.7-2.1
Extinction: sum of active levers before priming1.51.52.0-1.0-1.21.4
Active lever presses in extinction session 60.80.82.20.3-0.21.5
Bone: final force6.310.211.63.43.4-2.7
Bone: final moment6.911.313.23.63.6-2.7
Food consumed during 24 hour testing period0.70.81.21.10.9-0.7
Glucose6.49.614.3-2.8-2.63.8
Heart weight0.40.60.80.80.9-0.4
Delay discount hyperbolic model param3.33.54.01.91.7-2.0
Intermittent access intake day 1-15 change0.20.20.30.40.5-0.4
Intermittent access intake escalation0.30.30.40.50.6-0.5
Intermittent access intake escalation 20.70.71.00.91.0-0.6
Intermitt. access day 1 inactive lever presses1.41.52.31.51.4-0.3
Intermitt. access day 15 inactive lever presses2.32.53.01.71.7-1.2
Intermitt. access escalation Index2.52.22.51.41.6-1.5
Intermittent access day 1 total infusions0.40.40.70.60.4-0.9
Intermittent access day 15 total infusions0.70.81.00.90.8-1.0
Intermittent access terminal intake (last 3 days)1.51.61.81.31.2-1.3
Intermittent access total infusions0.70.81.10.90.8-1.0
Intermittent access day 1 locomotion0.80.80.90.90.9-0.8
Intermittent access day 15 total locomotion0.50.50.60.70.7-0.8
Intermittent access total locomotion0.70.91.01.00.9-0.8
Intermittent access standard deviation0.80.91.5-0.6-0.91.2
Left kidney weight0.10.30.40.60.4-0.6
Right kidney weight0.10.30.60.30.2-0.8
Cocaine induced anxiety3.03.55.72.42.1-0.6
Post-drug Anxiety0.30.30.50.70.50.6
Baseline Anxiety6.97.49.2-3.0-2.92.1
Tail length7.622.923.04.84.8-4.8
Length with tail3.613.213.53.73.7-3.6
Length without tail0.00.10.1-0.2-0.30.4
Times rat made contact with spout0.80.91.41.21.0-0.5
Lifetime Intake0.20.20.50.40.3-0.7
Liver weight, left0.20.30.5-0.4-0.50.7
Liver weight, right3.05.06.22.02.2-2.5
Locomotor activity0.71.11.3-1.0-1.01.1
Locomotor testing distance0.40.71.2-0.7-0.61.1
Locomotor testing rearing0.10.10.30.20.20.5
Locomotion in novel chamber0.00.00.10.2-0.00.1
Locomotion in novel chamber post-restriction1.61.93.21.01.2-1.8
Fecal boli incidents, locomotor time 10.40.50.7-0.7-0.80.5
Change in fecal boli incidents, locomotor task4.64.35.0-2.2-2.02.0
Time >=10cm from walls, locomotor time 11.01.03.00.20.2-1.7
Bouts of movement, locomotor time 12.32.52.8-1.6-1.71.5
Total resting periods, locomotor time 13.13.43.9-1.8-2.01.7
Rest time, locomotor task time 10.40.40.7-0.5-0.60.8
Distance moved, locomotor task time 11.01.11.41.00.9-1.2
Vertical activity count, locomotor time 12.32.43.21.41.4-1.8
Time >=10cm from walls, locomotor time 20.30.41.0-0.0-0.2-1.0
Bouts of movement, locomotor time 21.41.51.8-1.3-1.21.0
Total resting periods, locomotor time 20.60.60.9-0.9-0.90.5
Rest time, locomotor task time 20.10.10.1-0.4-0.4-0.2
Distance moved, locomotor task time 20.10.10.20.40.3-0.3
Vertical activity count, locomotor time 20.40.40.70.60.5-0.8
Light reinforcement 12.44.45.52.01.9-2.3
Light reinforcement 24.15.56.92.12.2-2.6
Bone: marrow area0.00.10.10.20.2-0.3
Bone: maximum diameter2.24.14.42.01.9-2.1
Bone: maximum force6.411.012.23.53.5-3.0
Bone: maximum moment7.012.013.63.73.7-3.0
Mean time between licks in bursts1.62.32.6-1.6-1.61.3
Mean num. licks in bursts0.20.20.50.10.30.7
Cd content in liver2.22.42.8-1.4-1.61.7
Co content in liver0.10.10.3-0.2-0.20.5
Cu content in liver0.10.10.20.30.40.1
Fe content in liver0.91.11.2-1.1-1.11.0
K content in liver3.73.64.71.71.8-2.2
Mg content in liver1.01.02.20.60.6-1.5
Mn content in liver0.40.50.70.60.6-0.9
Na content in liver0.00.00.10.10.2-0.3
Rb content in liver1.21.51.81.21.1-1.3
Se content in liver0.40.40.60.60.6-0.7
Sr content in liver0.70.61.1-0.5-0.61.1
Zn content in liver0.10.10.3-0.1-0.1-0.5
Bone: minimum diameter3.66.87.82.82.8-2.2
Time in familiar zone, hab. session 10.20.20.5-0.3-0.30.7
Time in novel zone, hab. session 10.10.10.20.20.2-0.5
Total zone transitions, hab. session 10.30.40.6-0.5-0.60.8
Total locomotion distance, hab. session 10.20.20.50.70.5-0.2
Locomotion velocity, hab. session 10.20.30.50.70.6-0.2
Time in familiar zone, hab. session 20.30.30.7-0.3-0.40.8
Time in novel zone, hab. session 20.10.10.1-0.4-0.2-0.3
Total zone transitions, hab. session 20.00.00.1-0.2-0.3-0.1
Total locomotion distance, hab. session 20.81.11.70.90.9-1.3
Locomotion velocity, hab. session 21.21.72.41.21.2-1.5
Novel to familiar place preference ratio2.02.02.81.71.6-0.8
Novelty place preference1.91.92.61.61.5-0.8
Time in novel zone, NPP test1.61.62.21.51.4-0.8
Total zone transitions, NPP test0.10.10.2-0.4-0.4-0.2
Total locomotion distance, NPP test0.40.61.10.60.5-1.1
Locomotion velocity, NPP test0.50.71.00.80.7-1.0
Intraocular pressure0.30.40.60.40.8-0.6
Delta distance traveled before/after self-admin0.00.00.00.0-0.2-0.0
Delta ambulatory time before/after self-admin0.30.30.5-0.5-0.70.4
Parametrial fat weight1.93.84.01.92.0-1.9
Pavlov. Cond. lever latency0.70.91.0-1.0-0.91.0
Pavlov. Cond. magazine entry latency1.62.13.31.81.6-0.8
Pavlov. Cond. change in total contacts0.20.20.30.40.30.5
Pavlov. Cond. index score3.13.94.82.22.0-1.7
Pavlov. Cond. latency score2.22.83.41.81.7-1.5
Pavlov. Cond. lever contacts0.91.01.21.10.9-1.0
Pavlov. Cond. magazine entry number1.01.32.1-1.4-1.30.4
Pavlov. Cond. intertrial magazine entries0.30.40.60.50.7-0.8
Pavlov. Cond. lever-magazine prob. diff.3.24.05.02.22.0-1.6
Pavlov. Cond. response bias1.41.72.51.61.4-0.8
Pavlov. Cond. lever latency0.81.11.5-1.2-1.20.8
Pavlov. Cond. magazine entry latency1.31.51.6-1.2-1.31.2
Pavlov. Cond. change in total contacts0.10.10.3-0.0-0.20.6
Pavlov. Cond. index score0.10.10.30.0-0.10.6
Pavlov. Cond. latency score0.00.00.10.20.00.3
Pavlov. Cond. lever contacts1.31.82.21.51.3-1.2
Pavlov. Cond. magazine entry number0.70.91.10.80.9-1.1
Pavlov. Cond. intertrial magazine entries2.22.93.01.71.7-1.7
Pavlov. Cond. lever-magazine prob. diff.0.20.20.6-0.1-0.20.7
Pavlov. Cond. response bias0.20.20.40.60.5-0.2
Time in closed arm before self-admin1.11.31.9-1.4-1.01.0
Time in closed arm after self-admin2.12.12.8-1.7-1.51.1
Time in open arm before self-admin0.30.30.60.50.2-0.8
Time in open arm after self-admin0.10.10.20.40.2-0.2
Bone: periosteal estimation2.55.15.62.32.4-2.1
Bone: periosteal perimeter3.15.15.72.42.4-2.0
Bone: post-yield work0.00.00.10.00.1-0.3
Progressive ratio test 1 active lever presses1.51.62.21.21.1-1.5
Progressive ratio test 1 breakpoint1.81.92.71.31.2-1.7
Progressive ratio test 1 inactive lever presses3.84.24.92.22.1-1.8
Progressive ratio test 2 active lever presses0.50.60.70.80.6-0.8
Progressive ratio test 2 breakpoint0.80.91.20.90.9-1.1
Progressive ratio test 2 inactive lever presses0.40.50.80.90.7-0.5
Incentive Sensitization - Responses0.10.10.20.20.2-0.4
Incentive Sensitization - Breakpoint0.10.10.10.20.2-0.3
Sum of active levers in priming session hrs 5-60.60.61.10.70.51.0
Progressive ratio0.50.50.9-0.6-0.51.0
Food seeking constrained by brief footshock0.30.30.8-0.3-0.40.9
Seeking ratio, punishment vs. effort0.10.20.20.40.3-0.5
Retroperitoneal fat weight6.320.823.04.84.7-4.2
Reaction time number correct0.81.11.80.90.8-1.4
Reaction time mean minus median0.10.10.2-0.3-0.40.3
Reaction time mean minus median AUC0.10.20.30.40.3-0.5
Reaction time num false alarms0.60.80.9-0.8-0.90.9
Reaction time num false alarms AUC1.01.41.6-1.2-1.31.1
Reaction time trials correct on left0.81.11.80.90.8-1.4
Reaction time trials on left0.81.21.91.00.9-1.4
Reaction time mean0.30.40.50.60.7-0.7
Reaction time mean AUC0.40.60.80.70.7-0.9
Median of all reaction times0.40.50.50.60.7-0.7
Reaction time omissions0.30.50.60.70.8-0.5
Reaction time false alarm rate1.82.52.8-1.5-1.51.7
Reaction time premature initiation rate2.12.84.0-1.5-1.52.0
Reaction time premature initiations0.60.81.0-0.8-0.91.0
Std. dev. reaction times0.30.40.4-0.7-0.70.5
Reaction time trials completed0.81.21.91.00.9-1.4
Reaction time trials AUC0.91.32.11.00.9-1.4
Run reversals in cocaine runway, females0.70.70.9-0.9-0.90.6
Run reversals in cocaine runway, males0.50.50.70.70.9-0.5
Latency to leave start box in cocaine runway0.30.30.5-0.7-0.60.2
Latency to leave start box in cocaine runway, F0.10.10.1-0.3-0.3-0.2
Latency to leave start box in cocaine runway, M0.00.00.1-0.3-0.2-0.1
Std. dev. time between licks in bursts1.31.52.61.01.0-1.6
Total sessions with >9 infusions0.30.30.5-0.7-0.6-0.2
Short access day 1 total inactive lever presses0.30.30.50.50.3-0.7
Short access day 10 total inactive lever presses3.63.95.22.32.1-1.5
Short access day 1 total infusions1.41.51.7-1.3-1.31.0
Short access day 10 total infusions0.60.60.80.90.7-0.8
Short access total infusions0.00.00.1-0.1-0.2-0.3
Short access day 1 locomotion0.20.20.4-0.6-0.50.3
Short access day 10 total locomotion0.20.30.4-0.5-0.40.6
Short access total locomotion0.40.50.6-0.8-0.80.4
One hour access (0.3 mA shock)1.72.02.41.41.2-1.6
Compulsive drug intake0.50.50.70.90.8-0.4
One hour access (shock baseline)0.70.81.40.70.6-1.2
Social response proportion0.20.20.3-0.4-0.30.6
Social responses0.00.00.00.0-0.0-0.1
Social time0.00.00.0-0.1-0.0-0.0
Soleus weight2.16.06.52.42.4-2.6
Bone: stiffness0.91.41.61.01.3-1.2
Tibialis anterior weight0.10.20.5-0.00.4-0.7
Time to tail flick, vehicle, before self-admin0.20.20.30.40.2-0.6
Time to tail flick, vehicle, after self-admin2.32.43.7-1.9-1.70.9
Time to tail flick, test, before self-admin0.00.00.1-0.1-0.00.2
Time to tail flick, test, after self-admin0.10.10.1-0.1-0.30.4
Delta time to tail flick, vehicle, before/after SA0.10.10.1-0.4-0.20.2
Delta time to tail flick, test, before/after SA0.50.50.5-0.6-0.70.7
Tibia length9.025.327.75.35.2-4.6
Ambulatory time before self-admin1.71.82.31.51.5-0.9
Ambulatory time after self-admin0.50.50.60.80.7-0.6
Bone: tissue strength2.22.22.51.41.4-1.6
Total heroin consumption0.30.40.90.40.30.9
Bone: trabecular number0.00.00.1-0.00.1-0.3
Bone: trabecular spacing0.50.70.80.80.7-0.9
Bone: trabecular thickness0.10.10.10.20.40.3
Bone: trabecular tissue density0.91.21.5-1.1-1.21.1
Water consumed over 24 hours0.00.00.1-0.1-0.20.3
Number of responses in last shaping day2.32.43.11.51.8-1.4