LOC120094203

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression LOC120094203 0.38 0.17 1.6e-07 0.14 0.15 0.15 0.14 8.4e-07 5.1e-07 6.0e-07 1.1e-06
2 NAcc gene expression LOC120094203 0.1 0.07 1.8e-06 0.05 0.06 0.06 0.06 1.0e-06 3.1e-07 2.1e-07 2.9e-07
3 Brain gene expression LOC120094203 0.04 0.03 3.3e-05 0.06 0.05 0.05 0.05 5.7e-06 8.8e-06 2.0e-05 8.4e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.30.60.5-0.3-0.8
Area under the delay curve0.20.20.4-0.30.7-0.2
BMI with tail5.618.320.0-4.44.53.9
BMI without tail2.24.55.5-2.21.72.4
Body weight5.322.325.2-5.05.04.1
Weight adjusted by age5.66.37.0-2.62.32.6
Bone surface0.10.20.2-0.40.50.4
Bone volume0.00.10.1-0.20.30.1
Breakpoint value in progressive ratio session0.50.60.7-0.90.80.6
Number of licking bursts2.12.42.71.6-1.7-1.4
Context. condit. distance diff. score0.60.81.10.9-0.7-1.0
Locomotion velocity, session 10.80.92.0-0.80.41.4
Locomotion distance, session 10.50.61.00.7-1.0-0.5
Locomotion velocity, session 20.10.10.2-0.20.10.4
Locomotion distance, session 20.10.10.2-0.30.10.5
Locomotion velocity, session 30.70.81.60.8-1.3-0.1
Locomotion distance, session 32.62.83.11.6-1.8-1.6
Stereotopy head waving bouts, day 30.40.50.6-0.70.60.8
Stereotopy head waving duration, day 30.50.60.9-0.70.60.9
Locomotion velocity, session 72.02.22.61.5-1.6-1.4
Locomotion distance, session 72.32.93.51.8-1.9-1.5
Stereotopy head waving bouts, day 70.50.51.0-0.60.51.0
Stereotopy head waving duration, day 70.30.41.0-0.40.21.0
Locomotion velocity, session 80.20.20.6-0.30.00.8
Locomotion distance, session 80.60.80.90.9-1.0-0.9
Degree of sensitization distance0.20.20.30.5-0.4-0.2
Degree of sensitization stereotypy0.30.30.6-0.50.40.8
Conditioned locomotion0.10.10.3-0.20.6-0.1
Cocaine response after cond. corrected2.22.53.4-1.61.21.9
Cocaine response after cond. not corrected1.21.31.8-1.20.81.3
Cocaine response before conditioning0.70.91.40.9-0.7-1.2
Saline control response0.70.91.41.0-1.2-0.5
Bone: connectivity density0.91.41.61.3-1.2-1.2
Bone: cortical apparent density0.60.80.90.9-0.9-0.9
Bone: cortical area0.00.00.00.00.1-0.1
Bone: cortical porosity0.40.51.00.5-0.5-1.0
Bone: cortical porosity0.90.91.90.8-0.6-1.4
Bone: cortical thickness0.91.51.91.2-1.0-1.4
Bone: cortical thickness0.70.81.00.9-0.9-1.0
Bone: cortical tissue density0.60.80.90.9-0.9-0.8
Condit. Reinf. active minus inactive responses0.30.30.6-0.60.8-0.2
Condit. Reinf. active-inactive response ratio0.20.20.70.10.3-0.8
Condit. Reinf. active responses0.60.71.0-1.00.90.6
Condit. Reinf. inactive responses0.60.71.3-0.80.31.1
Incentive salience index mean0.40.51.0-0.81.0-0.0
Condit. Reinf. lever presses0.10.20.4-0.40.6-0.1
Condit. Reinf. active minus inactive responses3.23.94.5-2.12.11.7
Condit. Reinf. active-inactive response ratio1.21.21.5-1.11.21.0
Condit. Reinf. active responses2.12.93.7-1.91.91.2
Condit. Reinf. inactive responses0.10.20.2-0.50.5-0.2
Condit. Reinf. lever presses0.40.50.90.6-0.5-0.9
Condit. Reinf. lever reinforcers received1.42.02.8-1.61.70.9
Conditioned reinforcement - actives0.20.20.30.5-0.5-0.1
Conditioned reinforcement - inactives0.20.20.40.4-0.6-0.2
Conditioned locomotion0.20.30.80.20.1-0.9
Patch foraging indifference point 0 sec0.10.20.4-0.40.10.6
Patch foraging indifference point AUC0.10.20.3-0.50.4-0.1
Delay disc. indifference point, 0s delay0.10.10.30.1-0.0-0.6
Delay disc. indifference point, 16s delay0.20.20.40.20.1-0.7
Delay disc. indifference point, 2s delay0.10.10.20.2-0.3-0.4
Delay disc. indifference point, 24s delay0.20.20.40.5-0.1-0.6
Delay disc. indifference point, 4s delay0.10.20.4-0.10.3-0.6
Delay disc. indifference point, 8s delay0.30.40.8-0.40.90.2
Indifference point function ln k0.20.30.6-0.40.40.8
Indifference point function log k0.20.30.6-0.40.40.8
Patch foraging total patch changes 0 sec0.20.30.6-0.50.20.8
Patch foraging total patch changes 12 sec0.00.00.00.0-0.2-0.2
Patch foraging total patch changes 18 sec0.00.10.2-0.40.10.1
Patch foraging total patch changes 24 sec0.10.20.3-0.4-0.00.6
Patch foraging total patch changes 6 sec0.30.40.6-0.80.60.5
Patch foraging time to switch 0 sec1.52.32.91.5-1.3-1.7
Patch foraging water rate 0 sec2.13.43.8-1.91.62.0
Patch foraging water rate 12 sec3.45.27.4-2.31.72.7
Patch foraging water rate 18 sec0.40.60.9-0.80.41.0
Patch foraging water rate 24 sec0.20.20.4-0.60.10.6
Patch foraging water rate 6 sec1.01.51.8-1.31.01.3
Seeking ratio, delayed vs. immediate footshock0.70.81.0-0.81.00.9
Distance traveled before self-admin0.10.10.20.40.00.2
Distance traveled after self-admin1.01.12.3-0.70.81.5
Extensor digitorum longus weight8.433.134.2-5.95.65.8
Bone: elastic displacement0.60.60.8-0.80.90.6
Bone: elastic work0.40.50.9-0.70.90.1
Bone: endosteal estimation1.94.25.0-2.01.92.2
Bone: endosteal perimeter3.87.88.4-2.92.82.7
Epididymis fat weight0.00.00.00.1-0.2-0.1
Delta time in closed arm before/after self-admin0.10.10.10.30.3-0.3
Delta time in open arm before/after self-admin2.01.93.11.3-1.8-1.1
Diff in mean of infusions in LGA sessions1.31.52.2-1.51.30.6
Delay discount exponential model param0.20.20.50.3-0.70.1
Extinction: sum of active levers before priming0.40.40.80.6-0.9-0.1
Active lever presses in extinction session 60.10.10.10.3-0.1-0.3
Bone: final force0.81.31.7-1.31.30.9
Bone: final moment0.40.60.9-0.91.00.5
Food consumed during 24 hour testing period0.30.30.8-0.30.20.9
Glucose0.40.60.8-0.80.60.9
Heart weight1.11.52.5-1.31.60.7
Delay discount hyperbolic model param0.10.10.20.2-0.50.3
Intermittent access intake day 1-15 change2.42.33.21.8-1.7-0.9
Intermittent access intake escalation3.03.04.02.0-1.9-1.1
Intermittent access intake escalation 20.50.50.70.8-0.8-0.3
Intermitt. access day 1 inactive lever presses2.02.12.81.7-1.2-1.5
Intermitt. access day 15 inactive lever presses0.20.20.40.50.2-0.6
Intermitt. access escalation Index1.51.32.4-1.01.50.8
Intermittent access day 1 total infusions0.91.01.61.0-1.3-0.7
Intermittent access day 15 total infusions3.13.54.62.0-2.1-1.3
Intermittent access terminal intake (last 3 days)1.21.32.01.1-1.4-0.9
Intermittent access total infusions1.71.83.31.3-1.8-0.7
Intermittent access day 1 locomotion2.93.13.71.9-1.8-1.5
Intermittent access day 15 total locomotion1.81.92.61.6-1.3-1.3
Intermittent access total locomotion0.40.40.70.7-0.8-0.3
Intermittent access standard deviation2.52.63.71.9-1.8-0.9
Left kidney weight2.36.57.0-2.52.72.5
Right kidney weight2.67.38.8-3.02.72.4
Cocaine induced anxiety0.10.10.20.1-0.2-0.4
Post-drug Anxiety1.41.62.01.3-1.1-1.4
Baseline Anxiety0.40.40.50.7-0.6-0.7
Tail length0.10.30.6-0.4-0.50.8
Length with tail1.14.14.9-2.21.92.0
Length without tail3.37.110.0-2.73.22.0
Times rat made contact with spout0.40.40.60.8-0.7-0.4
Lifetime Intake1.61.83.21.3-1.8-0.8
Liver weight, left0.30.51.1-0.60.41.0
Liver weight, right1.32.22.9-1.51.21.7
Locomotor activity6.09.610.6-3.32.93.1
Locomotor testing distance2.94.85.1-2.32.12.2
Locomotor testing rearing1.82.83.3-1.81.71.5
Locomotion in novel chamber0.70.91.10.9-1.0-0.9
Locomotion in novel chamber post-restriction0.20.20.30.5-0.2-0.6
Fecal boli incidents, locomotor time 10.00.00.00.00.1-0.2
Change in fecal boli incidents, locomotor task0.10.10.3-0.00.20.5
Time >=10cm from walls, locomotor time 10.50.50.7-0.80.80.5
Bouts of movement, locomotor time 10.20.20.2-0.40.40.5
Total resting periods, locomotor time 10.10.10.1-0.30.20.3
Rest time, locomotor task time 10.00.00.10.0-0.2-0.3
Distance moved, locomotor task time 10.10.10.20.4-0.4-0.2
Vertical activity count, locomotor time 10.00.00.10.3-0.1-0.1
Time >=10cm from walls, locomotor time 20.00.00.1-0.20.3-0.0
Bouts of movement, locomotor time 20.91.01.1-1.11.00.9
Total resting periods, locomotor time 21.01.01.2-1.11.01.0
Rest time, locomotor task time 20.30.40.40.6-0.6-0.7
Distance moved, locomotor task time 20.00.00.10.3-0.20.1
Vertical activity count, locomotor time 20.91.01.21.1-1.1-0.7
Light reinforcement 13.97.28.5-2.82.92.3
Light reinforcement 20.20.20.30.4-0.6-0.5
Bone: marrow area2.04.45.1-2.11.92.3
Bone: maximum diameter1.93.53.9-1.91.72.0
Bone: maximum force1.01.82.3-1.41.51.0
Bone: maximum moment0.50.91.3-1.01.10.6
Mean time between licks in bursts0.10.10.20.4-0.0-0.4
Mean num. licks in bursts0.81.01.0-0.91.01.0
Cd content in liver0.10.10.2-0.20.4-0.1
Co content in liver0.30.40.7-0.60.9-0.1
Cu content in liver0.81.01.4-1.11.20.6
Fe content in liver1.21.52.41.3-1.6-0.7
K content in liver2.32.32.6-1.61.51.4
Mg content in liver4.44.54.8-2.22.22.0
Mn content in liver0.10.10.2-0.30.50.1
Na content in liver2.02.12.6-1.61.21.6
Rb content in liver1.11.42.5-1.00.81.6
Se content in liver0.70.81.10.9-1.0-0.7
Sr content in liver0.00.00.1-0.20.3-0.1
Zn content in liver0.20.20.5-0.10.4-0.7
Bone: minimum diameter0.10.10.3-0.30.6-0.1
Time in familiar zone, hab. session 10.20.20.3-0.50.50.1
Time in novel zone, hab. session 10.40.40.50.7-0.7-0.4
Total zone transitions, hab. session 10.71.01.51.1-1.2-0.6
Total locomotion distance, hab. session 10.10.20.40.4-0.6-0.2
Locomotion velocity, hab. session 10.10.10.20.2-0.40.0
Time in familiar zone, hab. session 20.10.10.10.3-0.40.0
Time in novel zone, hab. session 20.10.10.10.2-0.1-0.4
Total zone transitions, hab. session 20.60.81.1-1.11.00.6
Total locomotion distance, hab. session 21.41.92.5-1.61.50.9
Locomotion velocity, hab. session 20.91.21.7-1.31.30.6
Novel to familiar place preference ratio1.41.41.9-1.21.41.0
Novelty place preference1.41.51.9-1.21.41.0
Time in novel zone, NPP test1.51.61.9-1.21.41.1
Total zone transitions, NPP test0.30.40.5-0.70.60.5
Total locomotion distance, NPP test0.50.70.9-0.90.60.8
Locomotion velocity, NPP test0.10.20.3-0.50.30.5
Intraocular pressure0.00.00.1-0.00.10.2
Delta distance traveled before/after self-admin1.21.32.1-1.10.81.5
Delta ambulatory time before/after self-admin0.60.61.0-0.80.51.0
Parametrial fat weight0.20.41.10.3-1.00.1
Pavlov. Cond. lever latency0.40.60.90.8-0.9-0.4
Pavlov. Cond. magazine entry latency0.70.91.4-0.71.2-0.9
Pavlov. Cond. change in total contacts0.60.61.2-0.81.1-0.1
Pavlov. Cond. index score0.20.30.5-0.30.5-0.7
Pavlov. Cond. latency score0.20.30.5-0.40.7-0.4
Pavlov. Cond. lever contacts0.30.30.6-0.60.70.0
Pavlov. Cond. magazine entry number0.50.61.40.2-0.61.2
Pavlov. Cond. intertrial magazine entries0.20.20.40.3-0.60.3
Pavlov. Cond. lever-magazine prob. diff.0.30.30.5-0.40.7-0.5
Pavlov. Cond. response bias0.50.61.0-0.61.0-0.7
Pavlov. Cond. lever latency0.20.30.7-0.30.20.9
Pavlov. Cond. magazine entry latency3.13.64.21.8-1.8-2.1
Pavlov. Cond. change in total contacts0.30.40.70.5-0.5-0.8
Pavlov. Cond. index score0.60.81.30.7-0.7-1.1
Pavlov. Cond. latency score0.40.50.80.6-0.6-0.9
Pavlov. Cond. lever contacts0.10.10.4-0.10.0-0.6
Pavlov. Cond. magazine entry number2.83.43.9-1.71.82.0
Pavlov. Cond. intertrial magazine entries0.30.40.8-0.50.40.9
Pavlov. Cond. lever-magazine prob. diff.0.70.91.60.7-0.8-1.2
Pavlov. Cond. response bias0.50.71.80.5-0.4-1.3
Time in closed arm before self-admin0.00.00.1-0.10.1-0.3
Time in closed arm after self-admin0.00.00.00.10.20.0
Time in open arm before self-admin0.50.60.8-0.50.90.8
Time in open arm after self-admin0.40.40.80.6-0.9-0.4
Bone: periosteal estimation1.22.52.7-1.61.51.7
Bone: periosteal perimeter1.83.03.2-1.81.71.8
Bone: post-yield work0.10.10.2-0.30.40.4
Progressive ratio test 1 active lever presses0.20.20.60.2-0.80.1
Progressive ratio test 1 breakpoint0.50.51.10.5-1.0-0.3
Progressive ratio test 1 inactive lever presses3.53.85.32.0-2.3-1.5
Progressive ratio test 2 active lever presses0.00.00.0-0.0-0.20.2
Progressive ratio test 2 breakpoint0.10.10.2-0.2-0.10.5
Progressive ratio test 2 inactive lever presses1.11.31.41.1-1.2-1.1
Incentive Sensitization - Responses0.60.61.0-0.81.00.4
Incentive Sensitization - Breakpoint0.40.40.7-0.60.90.2
Sum of active levers in priming session hrs 5-60.00.00.0-0.0-0.20.0
Progressive ratio0.40.51.10.50.2-1.0
Food seeking constrained by brief footshock0.40.51.3-0.20.31.1
Seeking ratio, punishment vs. effort2.53.06.1-1.50.92.5
Retroperitoneal fat weight0.00.00.0-0.20.20.1
Reaction time number correct1.82.52.7-1.61.51.7
Reaction time mean minus median0.70.91.70.8-1.3-0.5
Reaction time mean minus median AUC1.82.34.11.4-2.0-1.0
Reaction time num false alarms0.71.01.31.1-1.1-0.7
Reaction time num false alarms AUC0.50.71.01.0-1.0-0.2
Reaction time trials correct on left1.82.52.7-1.61.51.7
Reaction time trials on left1.92.73.0-1.71.51.7
Reaction time mean2.94.15.71.9-2.4-1.7
Reaction time mean AUC2.53.45.21.7-2.3-1.4
Median of all reaction times3.54.85.92.1-2.4-2.0
Reaction time omissions0.10.20.4-0.30.00.7
Reaction time false alarm rate1.82.63.31.8-1.7-1.2
Reaction time premature initiation rate1.41.82.2-1.51.31.3
Reaction time premature initiations2.73.84.5-2.11.81.9
Std. dev. reaction times1.72.44.01.5-2.0-1.1
Reaction time trials completed1.92.73.0-1.71.51.7
Reaction time trials AUC1.62.32.4-1.61.41.6
Run reversals in cocaine runway, females0.10.10.10.3-0.30.2
Run reversals in cocaine runway, males0.10.10.20.1-0.10.4
Latency to leave start box in cocaine runway1.31.41.5-1.11.21.2
Latency to leave start box in cocaine runway, F0.10.10.2-0.00.30.4
Latency to leave start box in cocaine runway, M3.02.93.2-1.81.71.6
Std. dev. time between licks in bursts1.61.92.9-1.41.71.0
Total sessions with >9 infusions0.70.81.80.7-1.4-0.3
Short access day 1 total inactive lever presses0.80.91.41.1-1.2-0.1
Short access day 10 total inactive lever presses2.32.63.61.9-1.5-1.4
Short access day 1 total infusions1.01.11.71.1-1.3-0.6
Short access day 10 total infusions1.11.22.31.0-1.5-0.6
Short access total infusions2.22.54.01.5-2.0-1.1
Short access day 1 locomotion0.20.20.30.5-0.5-0.0
Short access day 10 total locomotion0.10.10.30.4-0.50.2
Short access total locomotion1.81.82.51.5-1.6-1.0
One hour access (0.3 mA shock)0.00.00.1-0.1-0.10.3
Compulsive drug intake0.70.70.8-0.80.70.9
One hour access (shock baseline)0.80.91.21.1-1.0-0.8
Social response proportion0.10.10.30.10.5-0.1
Social responses0.10.10.1-0.30.30.2
Social time0.10.20.30.5-0.6-0.0
Soleus weight16.448.250.2-7.06.77.1
Bone: stiffness0.61.01.7-0.90.71.3
Tibialis anterior weight11.740.045.7-6.35.96.8
Time to tail flick, vehicle, before self-admin0.00.00.0-0.10.20.0
Time to tail flick, vehicle, after self-admin0.20.20.50.7-0.1-0.3
Time to tail flick, test, before self-admin0.30.30.80.20.0-0.9
Time to tail flick, test, after self-admin3.73.84.72.2-2.2-1.4
Delta time to tail flick, vehicle, before/after SA0.30.30.60.7-0.5-0.5
Delta time to tail flick, test, before/after SA0.80.71.40.9-1.2-0.1
Tibia length0.00.10.20.10.2-0.4
Ambulatory time before self-admin0.10.10.30.6-0.3-0.1
Ambulatory time after self-admin0.50.51.3-0.50.31.1
Bone: tissue strength1.71.61.71.3-1.2-1.3
Total heroin consumption1.41.72.6-1.11.11.6
Bone: trabecular number0.91.41.81.2-1.0-1.3
Bone: trabecular spacing0.00.00.10.1-0.3-0.1
Bone: trabecular thickness0.20.30.30.6-0.5-0.4
Bone: trabecular tissue density5.37.48.8-2.72.53.0
Water consumed over 24 hours0.50.60.70.8-0.7-0.7
Number of responses in last shaping day0.30.30.30.6-0.6-0.5