LOC120093705

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 IC gene expression LOC120093705 0.08 0.05 7.0e-03 0.04 0.04 0.01 0.04 1.3e-02 1.3e-02 9.8e-02 7.2e-03
2 PL gene expression LOC120093705 0.05 0.03 2.8e-04 0.04 0.03 0.03 0.04 1.1e-05 2.5e-04 1.3e-04 1.5e-05
3 PL mRNA stability LOC120093705 0.07 0.04 4.2e-05 0.01 0.04 0.03 0.03 1.2e-02 7.2e-05 1.5e-04 2.7e-04
4 Brain mRNA stability LOC120093705 0.1 0.06 4.7e-06 0.07 0.06 0.08 0.08 2.9e-07 1.1e-06 1.3e-07 1.4e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.51.01.61.2-1.30.8-0.5
Area under the delay curve1.62.44.32.1-1.81.1-0.8
BMI with tail0.72.67.0-1.00.61.4-2.6
BMI without tail0.10.61.5-0.4-0.30.8-1.2
Body weight0.52.44.8-2.21.7-0.2-1.3
Weight adjusted by age0.20.61.7-1.30.7-0.1-0.2
Bone surface0.30.50.80.9-0.80.6-0.6
Bone volume0.20.30.60.8-0.70.4-0.3
Breakpoint value in progressive ratio session0.30.51.00.5-0.61.0-0.7
Number of licking bursts0.10.30.9-0.1-0.2-1.00.6
Context. condit. distance diff. score1.51.84.2-1.32.0-0.90.7
Locomotion velocity, session 10.91.01.6-1.31.1-0.80.5
Locomotion distance, session 10.60.71.9-0.20.6-0.81.4
Locomotion velocity, session 21.41.74.1-2.01.2-1.0-0.3
Locomotion distance, session 20.40.60.80.6-0.80.9-0.7
Locomotion velocity, session 36.17.08.2-2.92.8-2.91.9
Locomotion distance, session 32.12.43.3-1.41.1-1.81.8
Stereotopy head waving bouts, day 30.50.61.1-0.81.1-0.3-0.7
Stereotopy head waving duration, day 31.21.53.0-1.41.7-0.5-0.8
Locomotion velocity, session 72.32.63.5-1.91.9-1.60.8
Locomotion distance, session 70.40.50.7-0.70.6-0.80.8
Stereotopy head waving bouts, day 72.63.14.7-2.22.1-1.70.6
Stereotopy head waving duration, day 71.31.62.5-1.61.5-1.30.3
Locomotion velocity, session 82.02.54.9-2.22.0-0.5-0.8
Locomotion distance, session 81.01.52.5-1.31.6-1.00.8
Degree of sensitization distance0.80.91.60.5-0.21.3-1.3
Degree of sensitization stereotypy1.31.42.3-1.51.4-1.10.4
Conditioned locomotion0.20.20.4-0.20.6-0.10.5
Cocaine response after cond. corrected0.00.10.1-0.2-0.1-0.40.3
Cocaine response after cond. not corrected0.40.61.0-0.70.1-1.00.9
Cocaine response before conditioning0.30.41.0-0.20.1-0.71.0
Saline control response0.60.82.8-0.30.3-0.21.7
Bone: connectivity density0.20.30.60.7-0.70.2-0.4
Bone: cortical apparent density0.30.51.51.2-0.50.30.3
Bone: cortical area0.30.51.0-1.01.00.2-0.3
Bone: cortical porosity0.30.30.7-0.0-0.20.8-0.7
Bone: cortical porosity0.30.30.6-0.2-0.10.8-0.7
Bone: cortical thickness0.20.30.90.6-0.00.9-0.3
Bone: cortical thickness0.60.81.80.20.51.4-1.0
Bone: cortical tissue density0.20.41.21.1-0.40.30.3
Condit. Reinf. active minus inactive responses0.60.71.21.1-1.00.7-0.4
Condit. Reinf. active-inactive response ratio0.60.71.71.3-0.90.5-0.1
Condit. Reinf. active responses0.30.40.90.9-0.90.10.2
Condit. Reinf. inactive responses0.30.30.8-0.1-0.1-0.70.9
Incentive salience index mean0.00.00.10.2-0.2-0.00.3
Condit. Reinf. lever presses0.60.91.3-1.10.7-0.91.0
Condit. Reinf. active minus inactive responses0.40.71.30.3-0.61.0-1.1
Condit. Reinf. active-inactive response ratio0.20.30.50.3-0.50.4-0.7
Condit. Reinf. active responses0.50.71.7-0.3-0.11.0-1.3
Condit. Reinf. inactive responses0.50.70.8-0.90.80.7-0.9
Condit. Reinf. lever presses0.20.30.9-0.60.10.3-1.0
Condit. Reinf. lever reinforcers received0.50.71.6-0.0-0.31.1-1.3
Conditioned reinforcement - actives0.00.10.20.10.2-0.10.5
Conditioned reinforcement - inactives0.00.00.1-0.20.20.10.3
Conditioned locomotion0.60.91.7-1.30.9-1.00.4
Patch foraging indifference point 0 sec0.10.30.90.2-0.90.4-0.5
Patch foraging indifference point AUC0.10.20.30.6-0.50.20.2
Delay disc. indifference point, 0s delay0.10.10.30.1-0.30.3-0.5
Delay disc. indifference point, 16s delay1.62.34.72.2-1.71.1-0.6
Delay disc. indifference point, 2s delay0.91.01.51.2-1.10.9-0.7
Delay disc. indifference point, 24s delay0.61.01.50.7-0.81.1-1.2
Delay disc. indifference point, 4s delay3.13.35.32.3-2.11.4-1.2
Delay disc. indifference point, 8s delay1.22.13.61.9-1.71.0-0.9
Indifference point function ln k0.92.64.3-2.12.0-1.10.8
Indifference point function log k0.92.64.3-2.12.0-1.10.8
Patch foraging total patch changes 0 sec0.10.20.70.2-0.90.2-0.2
Patch foraging total patch changes 12 sec0.10.20.30.3-0.60.4-0.5
Patch foraging total patch changes 18 sec0.10.30.60.6-0.80.00.3
Patch foraging total patch changes 24 sec0.10.40.7-0.60.1-0.80.6
Patch foraging total patch changes 6 sec0.71.22.51.0-1.60.9-0.7
Patch foraging time to switch 0 sec0.10.30.50.6-0.40.4-0.7
Patch foraging water rate 0 sec0.00.20.6-0.80.1-0.0-0.3
Patch foraging water rate 12 sec0.31.12.4-1.60.3-1.10.9
Patch foraging water rate 18 sec0.00.10.2-0.3-0.4-0.1-0.0
Patch foraging water rate 24 sec0.10.10.4-0.70.1-0.0-0.3
Patch foraging water rate 6 sec0.71.02.0-0.70.6-1.11.4
Seeking ratio, delayed vs. immediate footshock0.50.71.80.9-1.30.3-0.2
Distance traveled before self-admin0.51.11.5-0.71.1-1.11.2
Distance traveled after self-admin0.10.20.6-0.80.3-0.30.4
Extensor digitorum longus weight0.20.81.9-1.40.8-0.7-0.4
Bone: elastic displacement0.50.61.5-1.20.3-0.70.7
Bone: elastic work1.01.33.4-1.91.2-0.2-0.6
Bone: endosteal estimation1.02.45.8-2.41.7-0.9-0.5
Bone: endosteal perimeter1.43.58.5-2.92.0-1.30.0
Epididymis fat weight0.21.12.80.0-0.31.3-1.7
Delta time in closed arm before/after self-admin0.80.81.30.9-0.71.2-0.6
Delta time in open arm before/after self-admin4.45.27.3-2.21.9-2.72.2
Diff in mean of infusions in LGA sessions0.40.82.00.8-0.11.4-0.8
Delay discount exponential model param1.92.54.5-2.11.9-1.20.9
Extinction: sum of active levers before priming1.42.12.71.1-1.41.6-1.7
Active lever presses in extinction session 60.80.81.90.2-0.11.0-1.4
Bone: final force0.81.32.70.5-0.11.6-1.5
Bone: final moment1.01.73.40.5-0.11.9-1.7
Food consumed during 24 hour testing period0.40.91.8-1.31.30.2-0.4
Glucose0.20.30.70.9-0.00.60.2
Heart weight0.91.43.9-0.60.51.0-2.0
Delay discount hyperbolic model param1.92.54.6-2.11.8-1.10.9
Intermittent access intake day 1-15 change0.00.10.2-0.40.10.20.5
Intermittent access intake escalation0.00.20.5-0.40.3-0.20.7
Intermittent access intake escalation 20.30.50.80.6-0.90.90.1
Intermitt. access day 1 inactive lever presses0.00.30.80.4-0.10.9-0.5
Intermitt. access day 15 inactive lever presses0.10.51.40.4-0.21.2-0.5
Intermitt. access escalation Index0.00.10.20.5-0.10.20.4
Intermittent access day 1 total infusions1.02.94.1-1.92.0-1.81.0
Intermittent access day 15 total infusions1.43.44.0-1.82.0-1.81.8
Intermittent access terminal intake (last 3 days)1.32.33.4-1.71.9-1.31.1
Intermittent access total infusions2.32.84.1-1.72.0-1.51.2
Intermittent access day 1 locomotion0.81.52.5-1.01.3-1.61.0
Intermittent access day 15 total locomotion0.93.54.8-2.22.0-1.91.1
Intermittent access total locomotion2.12.53.5-1.91.8-1.70.8
Intermittent access standard deviation0.00.20.4-0.60.60.3-0.1
Left kidney weight2.419.539.8-6.35.8-1.3-1.8
Right kidney weight2.316.429.8-5.55.2-0.2-3.0
Cocaine induced anxiety0.51.52.50.6-0.91.5-1.6
Post-drug Anxiety3.13.54.41.8-1.92.1-1.6
Baseline Anxiety0.20.30.90.40.0-0.61.0
Tail length0.31.74.3-0.50.2-1.62.1
Length with tail0.52.43.4-1.81.6-1.61.0
Length without tail0.21.22.8-0.90.80.7-1.7
Times rat made contact with spout0.30.30.7-0.50.9-0.50.1
Lifetime Intake2.32.84.0-1.82.0-1.61.1
Liver weight, left1.12.03.3-1.61.8-1.01.1
Liver weight, right2.44.25.5-1.72.3-2.02.1
Locomotor activity1.42.14.0-2.01.8-1.2-0.1
Locomotor testing distance0.10.10.2-0.40.3-0.5-0.0
Locomotor testing rearing0.31.11.6-1.11.3-1.00.7
Locomotion in novel chamber2.94.05.6-1.71.5-2.42.2
Locomotion in novel chamber post-restriction0.00.10.10.3-0.40.1-0.0
Fecal boli incidents, locomotor time 10.00.10.3-0.50.3-0.3-0.2
Change in fecal boli incidents, locomotor task0.60.71.1-0.70.6-0.91.0
Time >=10cm from walls, locomotor time 10.20.20.7-0.00.10.4-0.8
Bouts of movement, locomotor time 10.60.82.00.4-0.20.9-1.4
Total resting periods, locomotor time 11.71.93.51.1-0.71.6-1.9
Rest time, locomotor task time 10.30.51.7-0.40.30.2-1.3
Distance moved, locomotor task time 10.00.00.1-0.10.2-0.10.2
Vertical activity count, locomotor time 10.10.40.60.8-0.50.7-0.2
Time >=10cm from walls, locomotor time 20.10.40.80.2-0.70.9-0.4
Bouts of movement, locomotor time 20.72.22.71.7-1.11.5-1.6
Total resting periods, locomotor time 20.72.73.31.8-1.31.6-1.8
Rest time, locomotor task time 20.20.40.50.6-0.7-0.70.2
Distance moved, locomotor task time 21.01.33.0-1.71.4-0.50.5
Vertical activity count, locomotor time 20.30.71.8-1.31.0-0.00.2
Light reinforcement 10.62.74.9-2.21.5-1.61.1
Light reinforcement 20.71.63.9-2.01.5-0.7-0.1
Bone: marrow area0.92.25.4-2.31.6-0.8-0.5
Bone: maximum diameter1.63.27.5-2.72.2-0.4-0.8
Bone: maximum force0.71.32.80.10.21.6-1.7
Bone: maximum moment0.91.73.70.10.21.8-1.9
Mean time between licks in bursts0.10.31.00.3-0.2-0.41.0
Mean num. licks in bursts0.10.40.9-0.30.90.7-0.3
Cd content in liver0.10.10.3-0.30.6-0.20.1
Co content in liver0.10.10.2-0.40.1-0.50.4
Cu content in liver3.64.39.92.4-3.21.1-0.7
Fe content in liver0.60.81.50.1-0.51.1-1.2
K content in liver0.00.00.1-0.1-0.30.00.3
Mg content in liver0.60.60.90.8-0.90.8-0.7
Mn content in liver2.12.32.9-1.51.7-1.31.5
Na content in liver0.60.71.41.2-1.10.4-0.2
Rb content in liver2.83.34.11.6-1.72.0-1.9
Se content in liver0.30.30.9-0.20.3-0.51.0
Sr content in liver0.40.30.60.00.3-0.70.8
Zn content in liver0.50.50.8-0.40.7-0.90.9
Bone: minimum diameter1.32.54.7-2.21.7-1.40.8
Time in familiar zone, hab. session 10.30.41.0-1.00.6-0.1-0.2
Time in novel zone, hab. session 10.10.10.30.5-0.20.20.1
Total zone transitions, hab. session 10.50.71.81.4-0.60.30.7
Total locomotion distance, hab. session 10.91.32.0-0.71.2-1.21.4
Locomotion velocity, hab. session 10.91.31.6-0.81.1-1.31.3
Time in familiar zone, hab. session 20.40.51.1-0.40.4-0.71.0
Time in novel zone, hab. session 20.20.20.30.6-0.50.5-0.4
Total zone transitions, hab. session 20.20.20.60.20.10.8-0.5
Total locomotion distance, hab. session 20.10.10.3-0.40.5-0.30.1
Locomotion velocity, hab. session 20.10.10.2-0.30.5-0.20.0
Novel to familiar place preference ratio0.10.20.4-0.30.3-0.40.6
Novelty place preference0.60.71.0-0.80.8-0.81.0
Time in novel zone, NPP test0.70.81.2-0.80.9-0.91.1
Total zone transitions, NPP test0.20.20.30.6-0.50.10.5
Total locomotion distance, NPP test0.20.30.5-0.60.3-0.70.6
Locomotion velocity, NPP test0.20.30.5-0.50.2-0.70.7
Intraocular pressure0.71.11.4-1.10.9-1.21.0
Delta distance traveled before/after self-admin0.30.31.0-1.00.3-0.30.0
Delta ambulatory time before/after self-admin0.10.10.5-0.7-0.00.0-0.3
Parametrial fat weight0.20.40.80.4-0.3-0.60.9
Pavlov. Cond. lever latency0.60.71.50.9-0.40.6-1.2
Pavlov. Cond. magazine entry latency0.71.01.81.0-1.31.1-0.0
Pavlov. Cond. change in total contacts1.21.31.80.9-1.31.4-0.8
Pavlov. Cond. index score0.20.30.60.3-0.80.60.3
Pavlov. Cond. latency score0.10.10.2-0.0-0.50.30.5
Pavlov. Cond. lever contacts0.40.51.3-0.70.2-0.51.1
Pavlov. Cond. magazine entry number0.70.91.5-1.01.2-1.00.0
Pavlov. Cond. intertrial magazine entries0.40.41.00.8-1.00.3-0.1
Pavlov. Cond. lever-magazine prob. diff.0.30.30.70.4-0.80.60.3
Pavlov. Cond. response bias0.30.40.80.4-0.90.60.2
Pavlov. Cond. lever latency0.20.30.90.20.3-0.50.9
Pavlov. Cond. magazine entry latency3.04.34.81.9-2.22.1-2.1
Pavlov. Cond. change in total contacts1.12.75.30.9-1.21.8-2.3
Pavlov. Cond. index score1.11.72.40.9-1.31.4-1.6
Pavlov. Cond. latency score1.21.93.10.9-1.31.5-1.8
Pavlov. Cond. lever contacts0.40.61.20.1-0.60.9-1.1
Pavlov. Cond. magazine entry number1.01.31.8-1.01.1-1.11.4
Pavlov. Cond. intertrial magazine entries0.30.71.30.3-0.11.1-1.1
Pavlov. Cond. lever-magazine prob. diff.0.81.32.00.8-1.21.1-1.4
Pavlov. Cond. response bias1.01.42.00.8-1.21.2-1.4
Time in closed arm before self-admin0.40.81.91.0-1.40.30.4
Time in closed arm after self-admin0.20.20.50.4-0.3-0.20.7
Time in open arm before self-admin0.10.20.3-0.40.5-0.50.1
Time in open arm after self-admin1.11.21.9-1.41.0-1.30.6
Bone: periosteal estimation0.92.04.7-2.21.8-0.5-0.4
Bone: periosteal perimeter1.83.67.8-2.82.2-1.30.2
Bone: post-yield work1.62.83.71.8-1.21.9-1.7
Progressive ratio test 1 active lever presses0.50.91.4-0.71.0-1.20.9
Progressive ratio test 1 breakpoint0.50.81.3-0.61.0-1.10.9
Progressive ratio test 1 inactive lever presses0.51.32.4-1.01.5-1.00.8
Progressive ratio test 2 active lever presses0.00.00.1-0.20.3-0.0-0.1
Progressive ratio test 2 breakpoint0.00.00.1-0.30.3-0.10.0
Progressive ratio test 2 inactive lever presses0.10.30.6-0.40.6-0.40.8
Incentive Sensitization - Responses0.10.40.60.4-0.40.8-0.7
Incentive Sensitization - Breakpoint0.20.40.60.3-0.40.8-0.8
Sum of active levers in priming session hrs 5-60.30.30.40.5-0.60.5-0.6
Progressive ratio0.10.20.40.6-0.50.4-0.3
Food seeking constrained by brief footshock0.10.20.3-0.20.20.6-0.5
Seeking ratio, punishment vs. effort0.20.51.10.1-0.11.1-0.9
Retroperitoneal fat weight0.42.04.0-1.70.90.7-2.0
Reaction time number correct0.10.20.4-0.30.0-0.60.5
Reaction time mean minus median0.00.20.40.0-0.6-0.40.4
Reaction time mean minus median AUC0.10.41.0-0.70.1-1.00.4
Reaction time num false alarms0.91.52.3-0.90.9-1.41.5
Reaction time num false alarms AUC1.12.53.7-1.11.3-1.81.9
Reaction time trials correct on left0.10.20.4-0.30.0-0.60.5
Reaction time trials on left0.10.20.4-0.3-0.0-0.60.6
Reaction time mean1.02.24.21.7-2.11.2-0.6
Reaction time mean AUC0.81.93.71.6-1.91.0-0.4
Median of all reaction times2.23.45.32.2-2.31.7-1.0
Reaction time omissions0.40.61.21.0-1.10.4-0.1
Reaction time false alarm rate0.91.31.6-0.81.2-1.21.3
Reaction time premature initiation rate2.03.15.81.1-1.02.1-2.4
Reaction time premature initiations0.61.93.50.9-1.01.6-1.9
Std. dev. reaction times0.10.41.20.6-1.1-0.00.3
Reaction time trials completed0.10.20.4-0.3-0.0-0.60.6
Reaction time trials AUC0.00.10.3-0.40.0-0.50.4
Run reversals in cocaine runway, females0.40.41.1-0.00.0-0.71.1
Run reversals in cocaine runway, males2.52.73.6-1.91.6-1.91.1
Latency to leave start box in cocaine runway0.60.81.9-1.11.4-0.30.1
Latency to leave start box in cocaine runway, F0.40.51.4-0.81.2-0.0-0.2
Latency to leave start box in cocaine runway, M0.40.40.6-0.80.6-0.50.4
Std. dev. time between licks in bursts0.51.01.80.4-0.91.1-1.3
Total sessions with >9 infusions2.02.54.2-2.02.1-1.30.3
Short access day 1 total inactive lever presses0.30.61.1-1.10.60.3-1.0
Short access day 10 total inactive lever presses0.00.20.4-0.60.20.1-0.5
Short access day 1 total infusions0.81.52.6-1.41.6-1.10.6
Short access day 10 total infusions1.01.63.3-1.41.8-0.90.5
Short access total infusions1.01.52.6-1.51.6-0.90.2
Short access day 1 locomotion0.10.20.4-0.30.6-0.30.3
Short access day 10 total locomotion0.62.43.3-1.01.8-1.81.5
Short access total locomotion0.60.91.3-0.91.1-1.00.8
One hour access (0.3 mA shock)1.31.62.1-1.41.4-1.11.1
Compulsive drug intake0.30.50.90.3-0.60.7-0.9
One hour access (shock baseline)1.02.63.2-1.51.8-1.51.7
Social response proportion0.30.40.9-1.00.9-0.1-0.1
Social responses1.52.03.4-1.91.5-1.20.9
Social time0.20.30.90.3-0.1-0.31.0
Soleus weight0.41.22.20.7-0.41.4-1.5
Bone: stiffness1.93.55.51.7-1.22.3-2.1
Tibialis anterior weight0.10.50.80.6-0.70.5-0.9
Time to tail flick, vehicle, before self-admin0.10.10.20.10.5-0.2-0.0
Time to tail flick, vehicle, after self-admin0.00.00.1-0.20.0-0.20.1
Time to tail flick, test, before self-admin1.01.22.4-1.11.5-0.80.7
Time to tail flick, test, after self-admin0.50.50.90.7-0.61.0-0.6
Delta time to tail flick, vehicle, before/after SA0.50.51.5-0.2-0.30.7-1.2
Delta time to tail flick, test, before/after SA1.51.93.31.5-1.81.2-0.7
Tibia length0.00.10.1-0.2-0.30.3-0.2
Ambulatory time before self-admin0.72.13.2-1.01.3-1.61.8
Ambulatory time after self-admin0.20.30.8-0.4-0.1-0.40.9
Bone: tissue strength1.92.02.31.2-1.51.5-1.3
Total heroin consumption0.91.02.00.4-0.61.4-1.3
Bone: trabecular number0.20.40.90.8-0.9-0.10.5
Bone: trabecular spacing1.11.63.1-1.81.3-0.2-1.2
Bone: trabecular thickness0.10.10.40.20.1-0.30.6
Bone: trabecular tissue density0.61.12.11.4-1.30.6-0.4
Water consumed over 24 hours0.20.30.7-0.90.7-0.1-0.2
Number of responses in last shaping day0.20.30.70.9-0.30.6-0.3