LOC108352144

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression LOC108352144 0.04 0.02 2.8e-03 0 0.03 0.01 0.01 2.0e-01 3.3e-03 2.0e-02 6.0e-02
2 PL gene expression LOC108352144 0.06 0.04 3.3e-05 0.05 0.03 0.04 0.05 3.2e-06 1.1e-04 3.2e-05 3.4e-06
3 NAcc gene expression LOC108352144 0.04 0.02 1.5e-05 0.05 0.03 0.04 0.04 3.8e-08 8.1e-05 2.9e-07 2.6e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density4.07.411.2-1.73.32.9
Area under the delay curve0.10.20.2-0.40.50.3
BMI with tail1.24.08.00.8-1.8-2.8
BMI without tail0.31.42.8-1.0-0.7-1.7
Body weight0.31.22.8-1.70.1-0.9
Weight adjusted by age0.41.11.60.5-1.3-1.2
Bone surface4.58.811.4-2.43.43.0
Bone volume4.69.112.0-2.53.53.0
Breakpoint value in progressive ratio session0.10.20.3-0.50.30.5
Number of licking bursts0.00.00.00.1-0.20.1
Context. condit. distance diff. score2.02.42.91.3-1.7-1.7
Locomotion velocity, session 13.13.54.1-1.91.72.0
Locomotion distance, session 10.91.11.4-1.21.01.0
Locomotion velocity, session 22.63.15.0-1.51.42.2
Locomotion distance, session 20.30.50.7-0.70.50.8
Locomotion velocity, session 30.10.20.4-0.30.20.6
Locomotion distance, session 30.20.20.5-0.00.40.7
Stereotopy head waving bouts, day 30.30.40.9-0.31.00.4
Stereotopy head waving duration, day 30.10.10.1-0.30.2-0.3
Locomotion velocity, session 70.10.10.40.20.20.6
Locomotion distance, session 70.10.10.20.5-0.2-0.1
Stereotopy head waving bouts, day 70.30.30.60.10.60.8
Stereotopy head waving duration, day 70.40.51.30.10.61.1
Locomotion velocity, session 80.40.51.0-0.7-1.0-0.3
Locomotion distance, session 80.10.10.2-0.2-0.5-0.2
Degree of sensitization distance0.40.40.70.1-0.6-0.9
Degree of sensitization stereotypy0.20.30.50.7-0.00.5
Conditioned locomotion0.10.10.2-0.30.50.3
Cocaine response after cond. corrected0.81.11.61.3-0.9-1.0
Cocaine response after cond. not corrected0.40.51.41.2-0.4-0.0
Cocaine response before conditioning1.41.73.5-0.71.11.9
Saline control response0.20.30.8-0.9-0.20.4
Bone: connectivity density4.47.110.5-1.83.22.7
Bone: cortical apparent density0.20.30.50.70.3-0.5
Bone: cortical area0.81.32.5-0.51.61.1
Bone: cortical porosity3.43.76.9-1.51.42.6
Bone: cortical porosity1.61.73.0-1.11.01.7
Bone: cortical thickness0.91.44.12.00.4-0.2
Bone: cortical thickness0.60.71.71.30.40.5
Bone: cortical tissue density0.10.20.40.60.3-0.4
Condit. Reinf. active minus inactive responses1.61.82.6-1.61.01.4
Condit. Reinf. active-inactive response ratio0.20.30.5-0.40.40.7
Condit. Reinf. active responses2.73.55.4-2.31.61.6
Condit. Reinf. inactive responses2.12.74.6-2.11.61.0
Incentive salience index mean2.83.64.1-1.81.92.0
Condit. Reinf. lever presses2.33.54.6-1.32.22.0
Condit. Reinf. active minus inactive responses5.38.211.0-2.42.83.3
Condit. Reinf. active-inactive response ratio3.65.88.5-1.72.42.9
Condit. Reinf. active responses6.18.89.8-3.12.63.1
Condit. Reinf. inactive responses2.23.26.0-2.51.21.4
Condit. Reinf. lever presses2.33.44.7-1.71.62.2
Condit. Reinf. lever reinforcers received5.88.29.4-2.82.63.1
Conditioned reinforcement - actives0.10.20.3-0.5-0.3-0.4
Conditioned reinforcement - inactives0.00.10.1-0.1-0.1-0.4
Conditioned locomotion0.40.61.3-1.10.60.3
Patch foraging indifference point 0 sec1.64.66.3-2.52.11.8
Patch foraging indifference point AUC0.10.20.5-0.7-0.1-0.2
Delay disc. indifference point, 0s delay0.10.10.1-0.30.30.2
Delay disc. indifference point, 16s delay0.00.00.1-0.20.2-0.3
Delay disc. indifference point, 2s delay2.42.63.1-1.81.71.4
Delay disc. indifference point, 24s delay0.20.40.9-1.00.40.1
Delay disc. indifference point, 4s delay0.10.10.20.4-0.30.0
Delay disc. indifference point, 8s delay0.30.40.7-0.20.80.8
Indifference point function ln k0.30.81.4-0.51.20.9
Indifference point function log k0.30.81.4-0.51.20.9
Patch foraging total patch changes 0 sec1.54.46.2-2.52.01.7
Patch foraging total patch changes 12 sec2.63.55.8-2.41.51.5
Patch foraging total patch changes 18 sec0.10.30.8-0.90.40.3
Patch foraging total patch changes 24 sec1.13.64.9-2.22.11.3
Patch foraging total patch changes 6 sec1.11.92.7-1.61.31.2
Patch foraging time to switch 0 sec0.10.20.40.6-0.20.4
Patch foraging water rate 0 sec0.31.22.2-1.51.10.4
Patch foraging water rate 12 sec0.20.91.41.2-0.8-0.8
Patch foraging water rate 18 sec0.51.01.8-0.41.31.1
Patch foraging water rate 24 sec0.20.20.50.7-0.2-0.3
Patch foraging water rate 6 sec0.40.61.4-0.51.20.4
Seeking ratio, delayed vs. immediate footshock0.91.32.40.6-1.1-1.5
Distance traveled before self-admin0.10.20.40.5-0.7-0.2
Distance traveled after self-admin0.61.01.11.1-0.9-1.0
Extensor digitorum longus weight4.417.727.72.8-4.2-5.3
Bone: elastic displacement0.50.71.71.3-0.4-0.4
Bone: elastic work0.30.30.70.10.80.6
Bone: endosteal estimation3.99.613.6-3.72.62.9
Bone: endosteal perimeter2.56.111.3-3.41.82.0
Epididymis fat weight0.00.20.7-0.9-0.0-0.1
Delta time in closed arm before/after self-admin0.50.51.21.10.10.4
Delta time in open arm before/after self-admin0.50.51.4-1.20.1-0.4
Diff in mean of infusions in LGA sessions0.40.71.20.5-0.8-1.1
Delay discount exponential model param0.10.20.20.4-0.5-0.3
Extinction: sum of active levers before priming0.00.10.1-0.2-0.3-0.2
Active lever presses in extinction session 60.40.40.7-0.80.40.4
Bone: final force0.71.11.60.11.31.3
Bone: final moment0.91.42.3-0.11.41.5
Food consumed during 24 hour testing period0.30.61.8-1.30.20.1
Glucose2.03.23.81.6-2.0-1.8
Heart weight1.62.53.51.5-1.3-1.9
Delay discount hyperbolic model param0.20.30.40.6-0.6-0.4
Intermittent access intake day 1-15 change0.21.11.60.9-1.3-1.0
Intermittent access intake escalation0.21.01.50.8-1.2-1.0
Intermittent access intake escalation 20.40.71.00.5-1.0-0.9
Intermitt. access day 1 inactive lever presses0.34.04.7-1.82.02.2
Intermitt. access day 15 inactive lever presses0.52.72.9-1.71.71.5
Intermitt. access escalation Index1.34.15.12.3-1.9-1.9
Intermittent access day 1 total infusions0.20.50.8-0.90.60.6
Intermittent access day 15 total infusions0.20.61.1-0.2-0.8-1.1
Intermittent access terminal intake (last 3 days)0.20.40.8-0.9-0.2-0.5
Intermittent access total infusions0.40.41.2-1.10.2-0.0
Intermittent access day 1 locomotion0.50.81.7-1.30.70.6
Intermittent access day 15 total locomotion0.10.41.3-1.10.10.1
Intermittent access total locomotion1.82.14.0-2.01.21.0
Intermittent access standard deviation0.10.30.5-0.70.50.3
Left kidney weight0.00.20.60.70.20.2
Right kidney weight0.00.20.40.70.30.1
Cocaine induced anxiety0.20.51.31.20.1-0.2
Post-drug Anxiety0.50.61.41.2-0.4-0.5
Baseline Anxiety0.20.30.50.1-0.7-0.5
Tail length1.79.012.5-3.52.82.6
Length with tail1.04.37.4-2.71.71.5
Length without tail0.00.00.0-0.10.2-0.1
Times rat made contact with spout0.00.00.1-0.20.20.3
Lifetime Intake0.60.71.7-1.30.60.3
Liver weight, left2.03.54.6-1.71.82.1
Liver weight, right0.40.80.90.80.90.9
Locomotor activity0.20.40.7-0.60.30.8
Locomotor testing distance0.10.40.6-0.70.10.8
Locomotor testing rearing0.00.10.30.0-0.60.2
Locomotion in novel chamber0.40.50.80.8-0.9-0.4
Locomotion in novel chamber post-restriction0.20.71.3-1.20.50.6
Fecal boli incidents, locomotor time 10.20.50.80.4-0.7-0.9
Change in fecal boli incidents, locomotor task0.10.10.30.2-0.2-0.6
Time >=10cm from walls, locomotor time 12.93.65.22.3-2.0-1.3
Bouts of movement, locomotor time 10.10.10.10.20.3-0.3
Total resting periods, locomotor time 10.10.10.10.20.3-0.2
Rest time, locomotor task time 10.30.40.7-0.20.80.8
Distance moved, locomotor task time 10.00.00.1-0.0-0.1-0.4
Vertical activity count, locomotor time 10.00.00.1-0.10.0-0.2
Time >=10cm from walls, locomotor time 20.20.51.11.0-0.6-0.4
Bouts of movement, locomotor time 20.00.10.40.2-0.2-0.6
Total resting periods, locomotor time 20.10.30.50.5-0.3-0.7
Rest time, locomotor task time 21.11.82.01.4-1.4-1.3
Distance moved, locomotor task time 20.30.40.5-0.20.70.7
Vertical activity count, locomotor time 21.33.04.3-1.41.72.1
Light reinforcement 10.83.75.6-2.41.91.4
Light reinforcement 22.14.75.9-2.22.41.8
Bone: marrow area3.79.012.6-3.62.52.8
Bone: maximum diameter1.73.54.0-1.82.01.8
Bone: maximum force0.40.81.6-0.31.20.8
Bone: maximum moment0.61.22.2-0.51.51.1
Mean time between licks in bursts0.31.62.50.8-1.3-1.6
Mean num. licks in bursts0.00.10.1-0.30.1-0.2
Cd content in liver3.53.95.11.7-2.3-1.9
Co content in liver1.01.22.00.5-1.4-1.2
Cu content in liver1.11.31.5-1.21.11.0
Fe content in liver0.50.71.6-0.30.61.3
K content in liver1.91.92.3-1.21.51.4
Mg content in liver1.31.42.4-0.61.61.2
Mn content in liver5.46.09.0-1.52.63.0
Na content in liver1.51.61.8-1.31.21.3
Rb content in liver0.20.30.50.60.10.7
Se content in liver0.60.81.11.0-0.5-1.0
Sr content in liver0.00.00.0-0.10.1-0.2
Zn content in liver0.50.51.11.1-0.3-0.6
Bone: minimum diameter3.26.110.2-3.22.31.7
Time in familiar zone, hab. session 10.40.40.9-0.2-0.6-0.9
Time in novel zone, hab. session 10.20.30.60.80.20.3
Total zone transitions, hab. session 10.00.10.2-0.0-0.2-0.4
Total locomotion distance, hab. session 11.21.72.6-1.01.61.2
Locomotion velocity, hab. session 11.52.12.5-1.41.61.3
Time in familiar zone, hab. session 20.40.51.00.1-1.0-0.7
Time in novel zone, hab. session 20.70.81.7-0.11.30.8
Total zone transitions, hab. session 20.00.00.1-0.1-0.0-0.3
Total locomotion distance, hab. session 20.91.12.0-1.11.40.5
Locomotion velocity, hab. session 20.71.01.8-1.01.30.4
Novel to familiar place preference ratio0.00.00.0-0.10.2-0.2
Novelty place preference0.00.00.0-0.00.1-0.0
Time in novel zone, NPP test0.00.00.00.10.10.0
Total zone transitions, NPP test0.50.71.0-0.81.00.6
Total locomotion distance, NPP test1.82.53.8-1.42.01.3
Locomotion velocity, NPP test1.11.62.3-1.41.50.6
Intraocular pressure0.50.81.6-0.4-0.8-1.3
Delta distance traveled before/after self-admin0.40.40.60.7-0.4-0.8
Delta ambulatory time before/after self-admin0.10.20.40.3-0.0-0.7
Parametrial fat weight0.81.92.4-1.31.51.3
Pavlov. Cond. lever latency2.43.04.11.4-2.0-1.8
Pavlov. Cond. magazine entry latency5.97.68.5-2.62.92.7
Pavlov. Cond. change in total contacts6.57.07.4-2.52.72.7
Pavlov. Cond. index score4.55.67.0-2.12.62.4
Pavlov. Cond. latency score3.24.15.0-1.82.22.0
Pavlov. Cond. lever contacts3.13.74.7-1.62.22.0
Pavlov. Cond. magazine entry number6.07.68.12.6-2.9-2.8
Pavlov. Cond. intertrial magazine entries0.60.71.5-1.2-0.2-0.7
Pavlov. Cond. lever-magazine prob. diff.5.06.27.5-2.22.72.5
Pavlov. Cond. response bias9.912.314.7-3.03.83.7
Pavlov. Cond. lever latency0.60.81.50.8-0.5-1.2
Pavlov. Cond. magazine entry latency1.72.43.41.2-1.8-1.5
Pavlov. Cond. change in total contacts0.30.81.2-1.10.21.1
Pavlov. Cond. index score0.10.10.2-0.1-0.40.3
Pavlov. Cond. latency score0.10.10.20.0-0.50.2
Pavlov. Cond. lever contacts0.50.81.3-0.80.61.2
Pavlov. Cond. magazine entry number2.02.63.0-1.71.71.3
Pavlov. Cond. intertrial magazine entries4.49.614.5-3.82.92.4
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.0-0.50.2
Pavlov. Cond. response bias0.10.10.3-0.30.00.5
Time in closed arm before self-admin0.00.00.0-0.0-0.10.0
Time in closed arm after self-admin1.01.11.81.3-1.1-0.5
Time in open arm before self-admin2.73.36.02.4-1.6-1.2
Time in open arm after self-admin0.40.40.9-0.2-0.6-1.0
Bone: periosteal estimation3.58.28.6-2.92.92.8
Bone: periosteal perimeter0.71.41.6-1.21.31.1
Bone: post-yield work0.00.00.10.2-0.1-0.2
Progressive ratio test 1 active lever presses0.71.22.1-1.51.00.6
Progressive ratio test 1 breakpoint0.91.62.8-1.71.20.7
Progressive ratio test 1 inactive lever presses0.61.72.5-1.61.21.1
Progressive ratio test 2 active lever presses1.01.53.0-1.71.00.6
Progressive ratio test 2 breakpoint1.01.32.9-1.70.90.5
Progressive ratio test 2 inactive lever presses0.41.22.2-1.51.00.5
Incentive Sensitization - Responses0.10.30.8-0.90.2-0.0
Incentive Sensitization - Breakpoint0.10.20.7-0.80.0-0.1
Sum of active levers in priming session hrs 5-60.50.50.70.5-0.7-0.8
Progressive ratio0.00.10.2-0.4-0.2-0.1
Food seeking constrained by brief footshock0.20.30.8-0.90.00.1
Seeking ratio, punishment vs. effort0.10.20.2-0.50.40.3
Retroperitoneal fat weight0.41.72.8-1.71.20.9
Reaction time number correct0.20.71.40.6-0.6-1.2
Reaction time mean minus median0.00.10.10.4-0.2-0.2
Reaction time mean minus median AUC0.00.20.50.7-0.2-0.1
Reaction time num false alarms0.61.01.6-1.30.80.8
Reaction time num false alarms AUC0.92.02.7-1.61.31.2
Reaction time trials correct on left0.20.71.40.6-0.6-1.2
Reaction time trials on left0.20.61.30.6-0.6-1.1
Reaction time mean0.10.20.40.30.50.6
Reaction time mean AUC0.10.20.40.40.40.6
Median of all reaction times0.20.40.70.20.60.8
Reaction time omissions1.01.72.1-1.21.51.3
Reaction time false alarm rate1.62.22.6-1.61.31.6
Reaction time premature initiation rate0.40.51.3-1.20.50.1
Reaction time premature initiations0.10.40.7-0.90.2-0.6
Std. dev. reaction times0.10.20.30.00.40.6
Reaction time trials completed0.20.61.30.6-0.6-1.1
Reaction time trials AUC0.20.71.30.6-0.6-1.2
Run reversals in cocaine runway, females0.50.61.21.1-0.5-0.6
Run reversals in cocaine runway, males0.30.40.50.6-0.7-0.4
Latency to leave start box in cocaine runway0.20.30.40.6-0.5-0.6
Latency to leave start box in cocaine runway, F1.21.52.31.5-1.0-1.1
Latency to leave start box in cocaine runway, M0.40.40.9-0.90.40.5
Std. dev. time between licks in bursts0.10.20.40.3-0.2-0.7
Total sessions with >9 infusions0.20.20.40.1-0.4-0.6
Short access day 1 total inactive lever presses0.20.50.8-0.50.90.6
Short access day 10 total inactive lever presses0.10.40.6-0.60.80.5
Short access day 1 total infusions0.10.20.2-0.50.40.2
Short access day 10 total infusions0.50.81.5-1.20.80.5
Short access total infusions0.50.71.0-1.00.80.7
Short access day 1 locomotion0.10.20.3-0.60.1-0.4
Short access day 10 total locomotion0.51.93.6-1.91.11.0
Short access total locomotion0.20.30.9-0.90.30.1
One hour access (0.3 mA shock)0.00.00.1-0.2-0.1-0.3
Compulsive drug intake0.50.71.31.1-0.7-0.5
One hour access (shock baseline)0.10.30.9-0.90.40.1
Social response proportion2.12.73.41.3-1.8-1.7
Social responses0.10.20.50.1-0.7-0.1
Social time1.01.51.81.2-1.3-1.2
Soleus weight0.10.40.70.5-0.5-0.8
Bone: stiffness0.10.10.2-0.00.40.4
Tibialis anterior weight0.62.04.00.0-1.4-2.0
Time to tail flick, vehicle, before self-admin0.10.10.20.40.10.2
Time to tail flick, vehicle, after self-admin0.20.41.0-1.00.4-0.2
Time to tail flick, test, before self-admin0.40.40.91.0-0.6-0.2
Time to tail flick, test, after self-admin0.60.71.0-0.80.51.0
Delta time to tail flick, vehicle, before/after SA1.51.63.1-1.81.10.7
Delta time to tail flick, test, before/after SA1.01.31.9-1.40.81.1
Tibia length0.00.10.30.60.2-0.2
Ambulatory time before self-admin0.10.30.40.6-0.6-0.2
Ambulatory time after self-admin0.20.30.40.7-0.3-0.6
Bone: tissue strength1.01.11.91.4-0.7-0.9
Total heroin consumption0.60.71.2-0.40.81.1
Bone: trabecular number4.89.112.4-2.33.53.1
Bone: trabecular spacing3.14.56.01.7-2.5-2.2
Bone: trabecular thickness4.66.39.2-2.13.02.3
Bone: trabecular tissue density0.00.00.10.10.20.2
Water consumed over 24 hours0.10.10.2-0.20.40.3
Number of responses in last shaping day0.00.00.1-0.30.20.1