LOC108351548

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC108351548 0.03 0.02 1.2e-03 0.02 0.02 0.01 0.02 1.0e-03 2.4e-03 1.1e-02 4.4e-03
2 Adipose intron excision ratio chr7_128970385_128978815 0.05 0.04 2.8e-04 0.02 0.02 0.02 0.02 1.1e-03 1.1e-03 2.0e-03 1.4e-03
3 Adipose mRNA stability LOC108351548 0.05 0.04 3.1e-07 0.05 0.05 0.05 0.05 3.2e-06 3.2e-06 4.6e-06 4.1e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density7.913.314.53.5-3.8-3.6
Area under the delay curve1.81.92.31.3-1.5-1.3
BMI with tail5.216.718.14.0-4.3-4.0
BMI without tail0.10.20.20.4-0.4-0.4
Body weight7.732.132.65.7-5.7-5.6
Weight adjusted by age2.42.73.11.7-1.4-1.8
Bone surface10.518.519.44.3-4.4-4.3
Bone volume7.011.812.43.4-3.5-3.4
Breakpoint value in progressive ratio session0.10.10.20.2-0.4-0.4
Number of licking bursts0.30.40.7-0.50.90.4
Context. condit. distance diff. score0.40.50.50.7-0.6-0.7
Locomotion velocity, session 10.50.60.7-0.70.80.7
Locomotion distance, session 12.63.34.0-1.91.62.0
Locomotion velocity, session 20.20.20.3-0.50.30.5
Locomotion distance, session 22.12.93.4-1.71.51.9
Locomotion velocity, session 32.93.43.9-1.81.72.0
Locomotion distance, session 35.05.55.8-2.42.22.4
Stereotopy head waving bouts, day 30.70.91.11.0-0.8-1.0
Stereotopy head waving duration, day 30.20.30.40.5-0.4-0.6
Locomotion velocity, session 70.00.00.0-0.10.20.1
Locomotion distance, session 71.21.51.6-1.21.31.2
Stereotopy head waving bouts, day 70.91.11.31.1-0.8-1.1
Stereotopy head waving duration, day 71.61.92.21.4-1.2-1.5
Locomotion velocity, session 80.20.20.20.5-0.5-0.4
Locomotion distance, session 80.81.21.5-1.10.91.2
Degree of sensitization distance0.80.80.91.0-0.8-0.9
Degree of sensitization stereotypy0.50.60.70.8-0.6-0.8
Conditioned locomotion0.10.10.2-0.10.4-0.0
Cocaine response after cond. corrected0.20.20.50.2-0.7-0.1
Cocaine response after cond. not corrected0.70.71.0-1.00.51.0
Cocaine response before conditioning7.28.79.6-3.03.12.8
Saline control response0.10.20.3-0.50.40.3
Bone: connectivity density6.19.510.83.0-3.3-3.0
Bone: cortical apparent density0.60.80.9-0.90.90.7
Bone: cortical area10.115.215.53.9-3.9-3.9
Bone: cortical porosity2.42.63.1-1.61.81.5
Bone: cortical porosity2.93.13.7-1.71.91.6
Bone: cortical thickness4.26.97.12.6-2.7-2.6
Bone: cortical thickness0.30.30.40.6-0.6-0.5
Bone: cortical tissue density0.71.01.1-1.01.10.9
Condit. Reinf. active minus inactive responses0.10.10.1-0.30.10.4
Condit. Reinf. active-inactive response ratio0.20.20.40.3-0.6-0.3
Condit. Reinf. active responses0.50.60.8-0.80.60.9
Condit. Reinf. inactive responses2.93.53.7-1.81.91.8
Incentive salience index mean0.00.00.10.1-0.3-0.1
Condit. Reinf. lever presses0.20.30.30.4-0.6-0.5
Condit. Reinf. active minus inactive responses0.00.00.0-0.10.20.1
Condit. Reinf. active-inactive response ratio0.20.20.2-0.50.40.5
Condit. Reinf. active responses0.30.40.5-0.70.60.5
Condit. Reinf. inactive responses1.11.41.7-1.21.31.0
Condit. Reinf. lever presses0.00.00.1-0.20.10.1
Condit. Reinf. lever reinforcers received0.60.80.9-1.00.90.8
Conditioned reinforcement - actives1.61.61.7-1.31.21.2
Conditioned reinforcement - inactives1.11.21.4-1.20.91.2
Conditioned locomotion0.30.40.6-0.60.70.5
Patch foraging indifference point 0 sec1.42.32.5-1.41.51.6
Patch foraging indifference point AUC0.20.20.3-0.50.50.3
Delay disc. indifference point, 0s delay1.61.81.91.4-1.2-1.4
Delay disc. indifference point, 16s delay1.81.81.81.3-1.3-1.3
Delay disc. indifference point, 2s delay1.01.11.11.1-1.0-1.1
Delay disc. indifference point, 24s delay1.61.51.61.3-1.2-1.3
Delay disc. indifference point, 4s delay0.60.61.00.7-1.0-0.6
Delay disc. indifference point, 8s delay4.24.35.22.0-2.3-2.0
Indifference point function ln k3.65.05.52.4-2.1-2.2
Indifference point function log k3.65.05.52.4-2.1-2.2
Patch foraging total patch changes 0 sec1.42.32.4-1.41.61.6
Patch foraging total patch changes 12 sec1.51.92.0-1.41.41.3
Patch foraging total patch changes 18 sec3.64.75.2-2.22.32.0
Patch foraging total patch changes 24 sec1.41.72.2-1.21.51.1
Patch foraging total patch changes 6 sec2.63.84.2-2.11.91.9
Patch foraging time to switch 0 sec3.35.15.3-2.32.32.2
Patch foraging water rate 0 sec4.67.47.82.8-2.7-2.7
Patch foraging water rate 12 sec3.75.66.02.4-2.3-2.4
Patch foraging water rate 18 sec0.81.11.11.0-1.1-1.0
Patch foraging water rate 24 sec3.24.54.92.2-2.0-2.2
Patch foraging water rate 6 sec4.87.07.22.7-2.6-2.6
Seeking ratio, delayed vs. immediate footshock0.40.50.80.6-0.9-0.5
Distance traveled before self-admin1.21.21.6-1.01.31.0
Distance traveled after self-admin0.10.10.1-0.30.10.3
Extensor digitorum longus weight6.324.625.15.0-4.9-5.0
Bone: elastic displacement5.15.85.9-2.42.42.4
Bone: elastic work0.10.10.2-0.40.40.3
Bone: endosteal estimation7.416.016.84.1-3.8-4.1
Bone: endosteal perimeter6.914.214.93.9-3.6-3.8
Epididymis fat weight0.61.52.01.1-1.4-1.1
Delta time in closed arm before/after self-admin0.20.20.40.3-0.6-0.2
Delta time in open arm before/after self-admin3.93.84.1-2.02.01.9
Diff in mean of infusions in LGA sessions1.11.21.41.0-1.2-1.1
Delay discount exponential model param1.51.61.9-1.21.41.1
Extinction: sum of active levers before priming0.40.40.50.6-0.6-0.7
Active lever presses in extinction session 60.50.40.60.6-0.8-0.6
Bone: final force10.316.717.34.1-4.2-4.0
Bone: final moment10.416.917.84.1-4.2-4.0
Food consumed during 24 hour testing period1.41.72.31.2-1.5-1.1
Glucose0.10.10.20.3-0.2-0.4
Heart weight0.00.00.10.0-0.3-0.0
Delay discount hyperbolic model param1.41.51.8-1.21.31.1
Intermittent access intake day 1-15 change0.90.91.1-1.00.71.0
Intermittent access intake escalation0.50.50.7-0.80.50.8
Intermittent access intake escalation 20.90.81.1-1.10.71.0
Intermitt. access day 1 inactive lever presses3.74.05.1-1.92.21.8
Intermitt. access day 15 inactive lever presses1.01.11.2-1.01.11.0
Intermitt. access escalation Index0.40.40.5-0.60.70.5
Intermittent access day 1 total infusions1.31.51.6-1.21.21.3
Intermittent access day 15 total infusions2.32.62.8-1.71.51.6
Intermittent access terminal intake (last 3 days)2.42.62.8-1.71.51.7
Intermittent access total infusions2.42.62.8-1.71.61.6
Intermittent access day 1 locomotion1.11.21.7-1.01.30.9
Intermittent access day 15 total locomotion1.11.11.7-1.01.30.9
Intermittent access total locomotion2.83.24.1-1.72.01.6
Intermittent access standard deviation0.50.60.7-0.70.70.8
Left kidney weight0.61.62.71.0-1.6-1.0
Right kidney weight3.18.68.73.0-2.9-2.9
Cocaine induced anxiety1.01.11.41.0-1.0-1.2
Post-drug Anxiety4.14.54.92.1-2.1-2.2
Baseline Anxiety1.21.31.51.2-1.1-1.1
Tail length0.00.10.2-0.30.40.3
Length with tail2.28.28.42.9-2.8-2.9
Length without tail8.518.619.94.3-4.5-4.2
Times rat made contact with spout0.10.20.30.3-0.6-0.2
Lifetime Intake1.82.02.2-1.51.31.4
Liver weight, left1.93.03.11.7-1.7-1.8
Liver weight, right1.93.23.31.8-1.8-1.8
Locomotor activity0.91.51.8-1.21.31.1
Locomotor testing distance2.74.55.1-2.02.32.1
Locomotor testing rearing2.84.35.2-2.02.31.9
Locomotion in novel chamber0.81.01.11.0-0.9-1.0
Locomotion in novel chamber post-restriction0.60.70.70.9-0.8-0.8
Fecal boli incidents, locomotor time 10.60.61.1-0.90.21.0
Change in fecal boli incidents, locomotor task0.70.70.80.9-0.7-0.9
Time >=10cm from walls, locomotor time 10.80.81.10.8-1.1-0.8
Bouts of movement, locomotor time 10.30.30.40.5-0.6-0.4
Total resting periods, locomotor time 10.00.00.0-0.1-0.10.1
Rest time, locomotor task time 10.00.00.1-0.20.10.3
Distance moved, locomotor task time 10.10.10.2-0.40.50.3
Vertical activity count, locomotor time 11.31.31.71.1-1.3-1.0
Time >=10cm from walls, locomotor time 20.20.20.3-0.50.40.5
Bouts of movement, locomotor time 23.23.53.81.9-1.7-2.0
Total resting periods, locomotor time 23.43.64.12.0-1.7-2.0
Rest time, locomotor task time 20.20.20.30.5-0.5-0.4
Distance moved, locomotor task time 20.40.40.5-0.70.70.6
Vertical activity count, locomotor time 20.20.20.20.5-0.4-0.4
Light reinforcement 13.25.87.2-2.42.72.2
Light reinforcement 20.91.21.4-1.21.11.0
Bone: marrow area7.416.117.04.1-3.8-4.1
Bone: maximum diameter4.88.99.63.1-2.8-3.0
Bone: maximum force12.822.122.24.7-4.7-4.7
Bone: maximum moment12.822.122.14.7-4.7-4.7
Mean time between licks in bursts0.50.70.7-0.90.80.8
Mean num. licks in bursts0.20.20.60.2-0.80.0
Cd content in liver0.20.30.3-0.50.50.5
Co content in liver0.20.20.3-0.50.50.4
Cu content in liver1.51.81.91.3-1.4-1.3
Fe content in liver0.10.10.1-0.40.30.3
K content in liver1.61.62.01.2-1.4-1.1
Mg content in liver0.00.00.10.2-0.3-0.1
Mn content in liver0.20.20.30.5-0.3-0.4
Na content in liver0.20.20.30.5-0.4-0.4
Rb content in liver0.00.00.0-0.10.20.1
Se content in liver0.30.30.4-0.60.40.6
Sr content in liver0.90.80.90.9-0.9-0.9
Zn content in liver0.40.50.6-0.60.80.7
Bone: minimum diameter7.714.415.43.9-3.6-3.9
Time in familiar zone, hab. session 10.10.10.2-0.40.20.5
Time in novel zone, hab. session 10.10.10.20.20.1-0.4
Total zone transitions, hab. session 10.30.40.4-0.60.70.6
Total locomotion distance, hab. session 10.00.00.1-0.30.10.2
Locomotion velocity, hab. session 10.00.00.0-0.20.00.1
Time in familiar zone, hab. session 20.10.10.10.1-0.4-0.2
Time in novel zone, hab. session 20.10.10.3-0.10.50.1
Total zone transitions, hab. session 20.00.10.1-0.20.00.4
Total locomotion distance, hab. session 20.10.10.2-0.40.20.5
Locomotion velocity, hab. session 20.00.00.1-0.2-0.10.2
Novel to familiar place preference ratio0.91.01.31.0-0.7-1.2
Novelty place preference0.50.50.80.7-0.4-0.9
Time in novel zone, NPP test0.30.30.60.6-0.2-0.8
Total zone transitions, NPP test0.81.21.5-1.20.91.2
Total locomotion distance, NPP test2.33.23.5-1.91.61.8
Locomotion velocity, NPP test1.21.71.9-1.41.11.4
Intraocular pressure11.115.516.1-4.04.03.8
Delta distance traveled before/after self-admin0.20.30.50.4-0.7-0.3
Delta ambulatory time before/after self-admin0.10.10.30.2-0.5-0.2
Parametrial fat weight0.91.82.2-1.41.11.5
Pavlov. Cond. lever latency0.00.00.10.2-0.1-0.1
Pavlov. Cond. magazine entry latency0.00.00.0-0.1-0.10.2
Pavlov. Cond. change in total contacts0.00.00.0-0.0-0.1-0.1
Pavlov. Cond. index score0.10.10.10.2-0.4-0.3
Pavlov. Cond. latency score0.00.00.10.1-0.3-0.2
Pavlov. Cond. lever contacts0.30.40.5-0.70.50.6
Pavlov. Cond. magazine entry number0.00.00.00.10.1-0.1
Pavlov. Cond. intertrial magazine entries0.40.50.6-0.70.60.8
Pavlov. Cond. lever-magazine prob. diff.0.40.50.60.6-0.8-0.7
Pavlov. Cond. response bias0.10.10.1-0.30.10.3
Pavlov. Cond. lever latency0.10.10.20.4-0.2-0.2
Pavlov. Cond. magazine entry latency0.20.30.40.5-0.5-0.6
Pavlov. Cond. change in total contacts0.71.01.30.8-1.1-1.1
Pavlov. Cond. index score0.10.10.20.2-0.4-0.5
Pavlov. Cond. latency score0.20.20.30.3-0.5-0.5
Pavlov. Cond. lever contacts0.30.40.6-0.80.50.5
Pavlov. Cond. magazine entry number1.11.31.7-1.11.11.3
Pavlov. Cond. intertrial magazine entries2.43.13.8-1.71.62.0
Pavlov. Cond. lever-magazine prob. diff.0.30.30.50.4-0.6-0.7
Pavlov. Cond. response bias0.20.20.4-0.60.40.3
Time in closed arm before self-admin0.91.01.31.1-0.7-1.1
Time in closed arm after self-admin0.30.30.40.6-0.5-0.6
Time in open arm before self-admin1.01.11.21.1-1.0-1.1
Time in open arm after self-admin0.20.30.4-0.50.60.5
Bone: periosteal estimation11.924.625.35.0-4.8-5.0
Bone: periosteal perimeter11.218.618.84.3-4.3-4.3
Bone: post-yield work8.211.112.03.5-3.1-3.4
Progressive ratio test 1 active lever presses3.63.84.0-2.02.01.9
Progressive ratio test 1 breakpoint3.33.43.6-1.91.91.8
Progressive ratio test 1 inactive lever presses2.42.62.8-1.61.71.6
Progressive ratio test 2 active lever presses1.81.92.2-1.41.51.3
Progressive ratio test 2 breakpoint2.42.73.1-1.71.81.5
Progressive ratio test 2 inactive lever presses2.93.33.7-1.81.91.8
Incentive Sensitization - Responses0.10.10.10.3-0.1-0.3
Incentive Sensitization - Breakpoint0.00.00.00.10.0-0.1
Sum of active levers in priming session hrs 5-60.20.20.3-0.50.40.4
Progressive ratio0.00.00.0-0.1-0.20.0
Food seeking constrained by brief footshock0.00.00.0-0.0-0.2-0.0
Seeking ratio, punishment vs. effort0.00.00.00.10.0-0.1
Retroperitoneal fat weight0.00.10.3-0.4-0.10.5
Reaction time number correct0.50.70.70.8-0.8-0.9
Reaction time mean minus median8.811.612.7-3.53.13.6
Reaction time mean minus median AUC6.68.59.3-3.02.73.0
Reaction time num false alarms1.72.42.7-1.41.51.7
Reaction time num false alarms AUC2.94.04.7-1.91.92.2
Reaction time trials correct on left0.50.70.70.8-0.8-0.9
Reaction time trials on left0.30.40.50.6-0.6-0.7
Reaction time mean0.71.01.3-1.20.81.0
Reaction time mean AUC0.40.60.8-0.90.50.8
Median of all reaction times0.00.00.0-0.2-0.1-0.0
Reaction time omissions9.913.514.5-3.83.53.7
Reaction time false alarm rate2.23.03.6-1.71.71.9
Reaction time premature initiation rate4.45.96.6-2.62.42.3
Reaction time premature initiations2.73.74.2-2.01.91.8
Std. dev. reaction times6.59.210.1-3.22.83.1
Reaction time trials completed0.30.40.50.6-0.6-0.7
Reaction time trials AUC0.71.01.11.0-1.0-1.1
Run reversals in cocaine runway, females0.30.30.5-0.50.70.5
Run reversals in cocaine runway, males1.31.31.5-1.21.11.1
Latency to leave start box in cocaine runway0.00.00.0-0.10.10.1
Latency to leave start box in cocaine runway, F2.02.22.6-1.51.61.4
Latency to leave start box in cocaine runway, M2.72.62.91.7-1.7-1.5
Std. dev. time between licks in bursts1.21.41.6-1.21.31.1
Total sessions with >9 infusions0.30.40.4-0.60.60.6
Short access day 1 total inactive lever presses0.80.91.1-1.10.90.9
Short access day 10 total inactive lever presses0.50.50.7-0.70.90.5
Short access day 1 total infusions0.00.00.10.2-0.3-0.2
Short access day 10 total infusions0.50.50.6-0.80.60.8
Short access total infusions0.10.10.2-0.40.30.4
Short access day 1 locomotion0.00.00.00.20.1-0.1
Short access day 10 total locomotion0.20.20.6-0.30.80.2
Short access total locomotion0.20.20.4-0.30.70.3
One hour access (0.3 mA shock)0.20.20.2-0.50.30.4
Compulsive drug intake0.60.60.70.8-0.9-0.7
One hour access (shock baseline)0.00.00.0-0.10.10.1
Social response proportion0.60.70.9-1.00.70.7
Social responses9.111.712.2-3.43.53.3
Social time0.60.81.0-1.00.80.9
Soleus weight1.13.13.51.9-1.7-1.8
Bone: stiffness15.824.925.45.0-4.9-5.0
Tibialis anterior weight2.58.69.43.1-2.7-3.0
Time to tail flick, vehicle, before self-admin1.31.31.5-1.21.01.2
Time to tail flick, vehicle, after self-admin0.10.10.10.20.3-0.2
Time to tail flick, test, before self-admin0.70.70.7-0.80.80.8
Time to tail flick, test, after self-admin0.10.10.10.3-0.3-0.3
Delta time to tail flick, vehicle, before/after SA0.30.30.40.7-0.3-0.6
Delta time to tail flick, test, before/after SA0.40.40.40.7-0.6-0.6
Tibia length5.916.718.14.0-3.9-4.3
Ambulatory time before self-admin4.14.24.9-2.02.21.9
Ambulatory time after self-admin1.41.51.6-1.31.31.2
Bone: tissue strength0.30.30.40.4-0.5-0.6
Total heroin consumption2.32.63.31.6-1.4-1.8
Bone: trabecular number4.57.18.82.5-3.0-2.5
Bone: trabecular spacing1.31.72.5-1.21.61.2
Bone: trabecular thickness0.30.30.4-0.60.40.6
Bone: trabecular tissue density0.10.20.3-0.50.60.3
Water consumed over 24 hours0.20.20.30.4-0.6-0.3
Number of responses in last shaping day0.40.40.50.6-0.5-0.7