LOC103693474

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC103693474 0.12 0.05 3.4e-08 0.06 0.07 0.07 0.02 5.8e-07 2.7e-08 2.4e-08 6.7e-03
2 Brain gene expression LOC103693474 0.06 0.03 3.9e-05 0.05 0.05 0.04 -0 1.9e-05 2.6e-05 9.6e-05 4.6e-01
3 BLA gene expression LOC103693474 0.17 0.08 5.9e-06 0.12 0.09 0.09 0.12 3.7e-07 1.6e-05 1.7e-05 9.6e-07
4 IC gene expression LOC103693474 0.12 0.06 7.6e-04 0.07 0.05 0.07 0.06 5.7e-04 3.6e-03 7.7e-04 1.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.2-0.30.0-0.4-0.5
Area under the delay curve2.53.05.21.40.82.32.0
BMI with tail0.51.83.1-1.1-0.2-1.8-1.7
BMI without tail0.00.00.1-0.20.1-0.0-0.0
Body weight0.00.00.10.00.30.20.1
Weight adjusted by age0.10.10.20.20.50.30.2
Bone surface1.52.75.9-2.0-2.4-0.8-0.7
Bone volume0.71.33.2-1.3-1.8-0.3-0.4
Breakpoint value in progressive ratio session3.23.84.72.21.71.82.1
Number of licking bursts0.40.61.3-0.1-1.10.51.0
Context. condit. distance diff. score0.10.10.30.10.3-0.5-0.3
Locomotion velocity, session 10.20.20.50.3-0.30.70.5
Locomotion distance, session 10.00.00.1-0.1-0.2-0.1-0.3
Locomotion velocity, session 21.01.21.5-1.0-1.2-0.9-1.2
Locomotion distance, session 21.21.72.2-1.2-1.5-1.2-1.3
Locomotion velocity, session 30.20.20.30.60.40.40.5
Locomotion distance, session 32.12.33.2-1.3-1.3-1.8-1.6
Stereotopy head waving bouts, day 30.81.01.71.11.30.70.6
Stereotopy head waving duration, day 30.00.00.00.10.1-0.1-0.2
Locomotion velocity, session 73.53.84.3-1.9-2.0-2.1-1.9
Locomotion distance, session 76.78.59.1-2.8-2.9-3.0-3.0
Stereotopy head waving bouts, day 71.11.32.51.11.60.80.8
Stereotopy head waving duration, day 70.70.81.60.91.30.60.5
Locomotion velocity, session 80.91.02.2-0.7-1.5-0.8-0.9
Locomotion distance, session 82.23.24.0-1.6-1.6-2.0-1.9
Degree of sensitization distance0.80.81.1-1.1-1.0-0.7-0.9
Degree of sensitization stereotypy0.91.02.10.91.50.70.6
Conditioned locomotion0.00.10.1-0.2-0.1-0.1-0.4
Cocaine response after cond. corrected1.31.62.21.51.41.01.1
Cocaine response after cond. not corrected0.60.71.11.00.80.70.7
Cocaine response before conditioning2.02.32.6-1.6-1.6-1.4-1.5
Saline control response0.00.10.2-0.40.00.30.1
Bone: connectivity density0.61.01.3-1.1-0.6-1.0-1.1
Bone: cortical apparent density3.04.15.72.32.41.91.4
Bone: cortical area3.55.38.3-2.3-1.0-2.9-2.5
Bone: cortical porosity0.40.50.8-0.9-0.9-0.4-0.3
Bone: cortical porosity0.40.40.8-0.8-0.9-0.2-0.1
Bone: cortical thickness2.13.511.81.03.4-0.8-0.6
Bone: cortical thickness0.60.71.90.21.4-0.7-0.5
Bone: cortical tissue density3.54.76.02.42.42.11.6
Condit. Reinf. active minus inactive responses1.01.12.1-0.9-0.1-1.2-1.4
Condit. Reinf. active-inactive response ratio1.61.73.3-1.0-0.2-1.6-1.8
Condit. Reinf. active responses0.20.30.6-0.30.4-0.6-0.8
Condit. Reinf. inactive responses0.30.40.60.50.30.70.8
Incentive salience index mean0.20.20.5-0.30.3-0.5-0.7
Condit. Reinf. lever presses0.10.10.30.20.50.10.1
Condit. Reinf. active minus inactive responses1.01.31.8-1.2-0.8-1.3-1.2
Condit. Reinf. active-inactive response ratio0.50.60.8-0.8-0.9-0.7-0.7
Condit. Reinf. active responses1.42.02.7-1.5-1.0-1.6-1.4
Condit. Reinf. inactive responses0.81.01.7-1.1-0.3-1.3-1.0
Condit. Reinf. lever presses3.54.95.9-2.4-2.1-2.2-2.1
Condit. Reinf. lever reinforcers received2.13.03.7-1.9-1.3-1.9-1.7
Conditioned reinforcement - actives0.81.42.1-1.1-0.8-1.4-1.4
Conditioned reinforcement - inactives3.55.26.3-2.3-1.9-2.5-2.4
Conditioned locomotion0.20.30.5-0.5-0.2-0.7-0.7
Patch foraging indifference point 0 sec1.42.54.2-1.6-0.6-1.8-2.0
Patch foraging indifference point AUC1.52.23.8-1.4-2.0-1.1-1.3
Delay disc. indifference point, 0s delay1.11.21.51.01.21.11.1
Delay disc. indifference point, 16s delay0.70.71.40.40.01.21.2
Delay disc. indifference point, 2s delay5.86.59.92.21.23.13.1
Delay disc. indifference point, 24s delay0.30.30.8-0.1-0.50.90.6
Delay disc. indifference point, 4s delay3.73.96.41.81.42.52.0
Delay disc. indifference point, 8s delay2.32.74.31.50.92.11.8
Indifference point function ln k0.20.41.40.11.2-0.5-0.3
Indifference point function log k0.20.41.40.11.2-0.5-0.3
Patch foraging total patch changes 0 sec1.32.54.0-1.5-0.6-1.8-2.0
Patch foraging total patch changes 12 sec3.54.56.4-2.1-1.9-1.9-2.5
Patch foraging total patch changes 18 sec0.50.81.3-0.8-0.6-1.0-1.1
Patch foraging total patch changes 24 sec3.25.67.1-2.4-1.8-2.4-2.7
Patch foraging total patch changes 6 sec1.82.83.6-1.8-1.3-1.7-1.9
Patch foraging time to switch 0 sec0.20.40.70.60.00.80.8
Patch foraging water rate 0 sec0.10.20.3-0.60.1-0.5-0.3
Patch foraging water rate 12 sec0.61.23.00.91.70.50.9
Patch foraging water rate 18 sec0.20.30.4-0.30.7-0.7-0.5
Patch foraging water rate 24 sec1.21.62.7-0.80.7-1.6-1.6
Patch foraging water rate 6 sec0.91.33.11.11.80.70.6
Seeking ratio, delayed vs. immediate footshock0.00.00.1-0.20.00.10.1
Distance traveled before self-admin1.31.72.11.41.51.21.1
Distance traveled after self-admin0.00.00.0-0.0-0.10.1-0.1
Extensor digitorum longus weight0.00.10.30.1-0.0-0.4-0.6
Bone: elastic displacement1.31.54.11.22.00.30.6
Bone: elastic work0.71.01.5-0.21.2-1.1-1.0
Bone: endosteal estimation12.226.746.7-5.6-6.8-3.8-3.8
Bone: endosteal perimeter7.916.835.6-4.5-6.0-2.5-2.3
Epididymis fat weight0.10.30.50.20.70.70.2
Delta time in closed arm before/after self-admin2.12.02.9-1.3-1.7-1.4-1.2
Delta time in open arm before/after self-admin2.82.83.11.51.81.71.6
Diff in mean of infusions in LGA sessions2.32.83.11.81.71.61.7
Delay discount exponential model param3.13.56.1-1.5-0.9-2.5-2.2
Extinction: sum of active levers before priming1.21.31.7-1.1-1.1-1.3-1.1
Active lever presses in extinction session 61.61.62.51.20.61.41.6
Bone: final force4.97.811.0-2.8-1.4-3.2-3.3
Bone: final moment3.96.29.4-2.4-0.9-3.0-3.1
Food consumed during 24 hour testing period0.10.20.5-0.4-0.70.00.2
Glucose0.10.20.30.50.30.50.4
Heart weight0.50.81.3-1.2-0.6-0.8-1.0
Delay discount hyperbolic model param3.94.37.3-1.8-1.1-2.7-2.4
Intermittent access intake day 1-15 change1.02.12.91.61.71.31.1
Intermittent access intake escalation0.61.11.81.21.40.80.8
Intermittent access intake escalation 24.04.65.32.32.32.11.9
Intermitt. access day 1 inactive lever presses0.93.44.8-1.8-0.9-2.2-2.1
Intermitt. access day 15 inactive lever presses0.00.00.1-0.2-0.40.00.1
Intermitt. access escalation Index0.00.00.0-0.1-0.1-0.1-0.2
Intermittent access day 1 total infusions5.28.510.4-3.2-2.6-3.0-2.7
Intermittent access day 15 total infusions1.42.12.7-1.6-1.1-1.6-1.5
Intermittent access terminal intake (last 3 days)1.72.22.7-1.6-1.1-1.6-1.5
Intermittent access total infusions6.67.89.2-3.0-2.5-2.9-2.7
Intermittent access day 1 locomotion3.74.76.0-2.5-2.1-2.1-2.0
Intermittent access day 15 total locomotion0.81.42.1-1.3-0.5-1.4-1.4
Intermittent access total locomotion4.75.66.4-2.5-2.1-2.4-2.4
Intermittent access standard deviation0.20.30.6-0.5-0.2-0.8-0.7
Left kidney weight0.00.20.50.20.70.50.2
Right kidney weight0.31.32.90.81.71.10.5
Cocaine induced anxiety0.00.00.2-0.0-0.20.40.0
Post-drug Anxiety0.10.10.3-0.2-0.5-0.1-0.4
Baseline Anxiety0.30.30.4-0.4-0.7-0.6-0.5
Tail length0.62.54.31.20.62.12.0
Length with tail1.04.56.81.81.32.62.5
Length without tail1.13.64.12.02.01.91.7
Times rat made contact with spout3.54.05.81.81.22.42.4
Lifetime Intake7.49.010.6-3.3-2.6-3.1-3.0
Liver weight, left0.10.20.30.10.20.60.5
Liver weight, right0.10.30.6-0.30.8-0.3-0.5
Locomotor activity1.01.51.8-1.3-1.2-1.3-1.1
Locomotor testing distance0.91.72.6-1.3-0.9-1.6-1.2
Locomotor testing rearing0.10.20.3-0.5-0.3-0.5-0.4
Locomotion in novel chamber0.00.00.10.2-0.10.30.2
Locomotion in novel chamber post-restriction0.50.81.0-1.0-0.8-0.7-0.9
Fecal boli incidents, locomotor time 10.30.40.6-0.7-0.8-0.4-0.5
Change in fecal boli incidents, locomotor task0.40.40.90.60.90.40.2
Time >=10cm from walls, locomotor time 11.01.11.4-1.0-0.9-1.1-1.2
Bouts of movement, locomotor time 10.10.10.2-0.3-0.5-0.2-0.2
Total resting periods, locomotor time 10.00.00.10.0-0.30.20.2
Rest time, locomotor task time 10.50.60.80.80.90.70.6
Distance moved, locomotor task time 10.20.40.50.60.50.50.7
Vertical activity count, locomotor time 11.02.53.1-1.8-1.6-1.6-1.3
Time >=10cm from walls, locomotor time 20.00.00.0-0.1-0.00.0-0.2
Bouts of movement, locomotor time 20.81.21.71.00.91.11.3
Total resting periods, locomotor time 20.50.81.40.80.61.01.2
Rest time, locomotor task time 20.00.00.1-0.10.2-0.3-0.1
Distance moved, locomotor task time 20.10.10.20.30.30.30.4
Vertical activity count, locomotor time 20.20.20.3-0.4-0.2-0.5-0.6
Light reinforcement 11.02.44.4-1.4-0.7-1.6-2.1
Light reinforcement 22.53.84.5-2.1-2.0-1.8-1.8
Bone: marrow area12.226.646.0-5.6-6.8-3.8-3.8
Bone: maximum diameter8.616.120.7-4.4-4.6-3.7-3.3
Bone: maximum force5.710.212.9-3.3-2.3-3.4-3.6
Bone: maximum moment4.47.810.6-2.9-1.7-3.1-3.3
Mean time between licks in bursts0.30.91.1-0.9-0.9-0.8-1.1
Mean num. licks in bursts0.60.92.60.91.60.60.0
Cd content in liver0.10.10.10.10.2-0.3-0.3
Co content in liver2.32.63.41.71.81.41.5
Cu content in liver0.30.40.60.60.40.80.6
Fe content in liver0.60.71.2-0.8-0.4-1.1-0.9
K content in liver0.90.81.21.00.31.11.0
Mg content in liver0.40.50.90.60.11.00.7
Mn content in liver0.10.20.3-0.6-0.50.00.1
Na content in liver0.70.81.30.90.11.01.1
Rb content in liver0.30.30.5-0.6-0.4-0.6-0.7
Se content in liver0.80.92.10.70.01.41.1
Sr content in liver1.11.01.9-1.1-1.4-0.6-0.7
Zn content in liver1.51.62.01.41.41.31.0
Bone: minimum diameter4.68.412.5-3.3-3.5-2.4-2.1
Time in familiar zone, hab. session 10.10.10.3-0.50.1-0.6-0.2
Time in novel zone, hab. session 10.20.20.30.40.40.6-0.1
Total zone transitions, hab. session 10.20.20.60.40.40.80.2
Total locomotion distance, hab. session 10.30.40.7-0.7-0.2-0.5-0.8
Locomotion velocity, hab. session 10.20.30.5-0.7-0.5-0.5-0.6
Time in familiar zone, hab. session 21.11.21.41.11.20.91.1
Time in novel zone, hab. session 23.43.44.9-1.7-1.3-2.1-2.2
Total zone transitions, hab. session 20.20.30.5-0.5-0.7-0.4-0.4
Total locomotion distance, hab. session 20.20.30.4-0.4-0.5-0.5-0.6
Locomotion velocity, hab. session 20.10.20.2-0.3-0.5-0.4-0.4
Novel to familiar place preference ratio0.10.10.20.30.40.20.5
Novelty place preference0.00.00.10.10.2-0.10.2
Time in novel zone, NPP test0.00.10.2-0.20.0-0.4-0.1
Total zone transitions, NPP test0.20.40.5-0.6-0.7-0.5-0.6
Total locomotion distance, NPP test0.91.31.6-1.1-0.8-1.3-1.3
Locomotion velocity, NPP test0.20.30.4-0.6-0.3-0.6-0.6
Intraocular pressure1.52.23.6-1.6-1.9-1.3-1.0
Delta distance traveled before/after self-admin2.22.32.6-1.6-1.5-1.3-1.6
Delta ambulatory time before/after self-admin1.21.41.9-1.3-1.4-0.9-1.1
Parametrial fat weight0.20.60.9-0.7-0.9-0.6-0.8
Pavlov. Cond. lever latency1.62.02.2-1.5-1.3-1.4-1.5
Pavlov. Cond. magazine entry latency3.24.17.12.02.71.51.7
Pavlov. Cond. change in total contacts0.60.61.60.81.30.20.4
Pavlov. Cond. index score2.02.63.71.71.91.31.5
Pavlov. Cond. latency score2.73.44.21.92.01.61.8
Pavlov. Cond. lever contacts1.21.51.91.31.41.01.2
Pavlov. Cond. magazine entry number2.83.56.8-1.8-2.6-1.3-1.4
Pavlov. Cond. intertrial magazine entries0.60.81.1-0.9-1.0-0.5-1.0
Pavlov. Cond. lever-magazine prob. diff.1.72.23.11.51.81.21.4
Pavlov. Cond. response bias1.21.53.61.21.90.70.8
Pavlov. Cond. lever latency2.02.73.51.81.51.91.4
Pavlov. Cond. magazine entry latency4.14.95.6-2.2-2.3-2.4-2.0
Pavlov. Cond. change in total contacts4.16.58.0-2.5-2.5-2.8-2.4
Pavlov. Cond. index score3.85.26.0-2.3-2.3-2.4-2.0
Pavlov. Cond. latency score4.35.76.5-2.5-2.4-2.6-2.1
Pavlov. Cond. lever contacts1.72.32.9-1.7-1.5-1.7-1.2
Pavlov. Cond. magazine entry number5.06.27.72.42.32.82.4
Pavlov. Cond. intertrial magazine entries0.00.00.1-0.3-0.10.10.0
Pavlov. Cond. lever-magazine prob. diff.3.75.05.7-2.3-2.3-2.4-2.0
Pavlov. Cond. response bias2.63.54.7-1.9-1.7-2.2-1.7
Time in closed arm before self-admin0.50.60.9-0.9-0.7-0.6-0.8
Time in closed arm after self-admin1.61.71.9-1.3-1.2-1.3-1.4
Time in open arm before self-admin0.60.71.01.00.60.80.8
Time in open arm after self-admin0.30.40.70.50.10.80.8
Bone: periosteal estimation9.620.324.6-5.0-5.0-4.1-3.8
Bone: periosteal perimeter3.86.59.7-2.9-3.1-2.1-1.8
Bone: post-yield work3.55.28.1-2.5-2.8-1.6-1.9
Progressive ratio test 1 active lever presses0.60.81.1-1.0-0.9-0.9-0.6
Progressive ratio test 1 breakpoint0.81.01.4-1.2-1.1-1.0-0.7
Progressive ratio test 1 inactive lever presses3.24.65.4-2.3-1.7-2.3-2.2
Progressive ratio test 2 active lever presses1.51.72.0-1.4-1.3-1.4-1.2
Progressive ratio test 2 breakpoint1.61.92.2-1.5-1.3-1.4-1.2
Progressive ratio test 2 inactive lever presses1.72.83.4-1.7-1.4-1.9-1.7
Incentive Sensitization - Responses0.20.20.3-0.5-0.4-0.5-0.4
Incentive Sensitization - Breakpoint0.10.20.2-0.4-0.3-0.5-0.4
Sum of active levers in priming session hrs 5-60.70.71.20.91.10.40.8
Progressive ratio0.91.52.4-1.2-1.6-1.1-0.9
Food seeking constrained by brief footshock0.60.71.11.00.80.80.7
Seeking ratio, punishment vs. effort0.81.21.71.21.31.00.9
Retroperitoneal fat weight0.00.10.2-0.40.1-0.2-0.4
Reaction time number correct0.10.30.5-0.6-0.0-0.7-0.5
Reaction time mean minus median0.00.00.1-0.20.30.20.0
Reaction time mean minus median AUC0.30.71.0-1.0-0.1-0.9-0.9
Reaction time num false alarms0.00.00.1-0.3-0.2-0.2-0.2
Reaction time num false alarms AUC0.00.00.00.0-0.20.20.2
Reaction time trials correct on left0.10.30.5-0.6-0.0-0.7-0.5
Reaction time trials on left0.20.30.5-0.6-0.1-0.7-0.5
Reaction time mean0.20.40.8-0.9-0.5-0.5-0.4
Reaction time mean AUC0.71.11.7-1.3-0.8-1.1-0.9
Median of all reaction times0.71.01.5-1.2-0.9-1.0-0.8
Reaction time omissions0.40.60.9-1.0-0.5-0.9-0.6
Reaction time false alarm rate0.20.30.50.50.10.70.7
Reaction time premature initiation rate6.99.611.33.22.53.23.4
Reaction time premature initiations2.54.55.22.11.92.12.3
Std. dev. reaction times0.00.00.1-0.20.20.00.2
Reaction time trials completed0.20.30.5-0.6-0.1-0.7-0.5
Reaction time trials AUC0.20.40.7-0.7-0.2-0.8-0.7
Run reversals in cocaine runway, females0.30.30.50.70.70.50.3
Run reversals in cocaine runway, males0.00.00.00.10.20.20.2
Latency to leave start box in cocaine runway0.30.41.40.31.2-0.1-0.1
Latency to leave start box in cocaine runway, F0.70.82.50.61.60.30.3
Latency to leave start box in cocaine runway, M0.60.61.0-0.7-0.4-0.8-1.0
Std. dev. time between licks in bursts2.93.94.9-1.9-1.7-2.0-2.2
Total sessions with >9 infusions0.50.60.9-1.0-0.5-1.0-0.7
Short access day 1 total inactive lever presses4.66.16.7-2.5-2.2-2.6-2.5
Short access day 10 total inactive lever presses0.61.51.7-1.2-1.2-1.2-1.3
Short access day 1 total infusions2.73.64.8-2.0-1.2-2.2-2.0
Short access day 10 total infusions3.74.76.0-2.5-1.8-2.3-2.1
Short access total infusions5.77.28.5-2.9-2.2-2.8-2.7
Short access day 1 locomotion0.70.81.3-1.1-0.5-0.9-0.9
Short access day 10 total locomotion0.40.71.4-0.9-1.2-0.5-0.4
Short access total locomotion0.40.50.8-0.9-0.6-0.8-0.6
One hour access (0.3 mA shock)1.31.51.7-1.3-1.2-1.2-1.2
Compulsive drug intake1.92.32.7-1.6-1.6-1.3-1.5
One hour access (shock baseline)0.10.20.2-0.5-0.4-0.4-0.3
Social response proportion0.20.30.80.30.90.40.2
Social responses0.40.51.60.11.3-0.2-0.4
Social time0.20.30.7-0.8-0.2-0.4-0.6
Soleus weight0.20.61.5-0.6-1.2-0.6-0.5
Bone: stiffness5.89.411.3-3.2-2.6-3.0-3.4
Tibialis anterior weight0.00.10.20.20.3-0.1-0.5
Time to tail flick, vehicle, before self-admin0.60.61.3-0.7-1.2-0.6-0.6
Time to tail flick, vehicle, after self-admin1.41.82.11.41.21.51.4
Time to tail flick, test, before self-admin1.11.11.81.00.41.21.3
Time to tail flick, test, after self-admin2.32.42.71.61.21.61.6
Delta time to tail flick, vehicle, before/after SA3.13.03.71.81.91.71.5
Delta time to tail flick, test, before/after SA0.10.10.10.40.40.1-0.1
Tibia length0.20.61.60.61.30.30.4
Ambulatory time before self-admin1.92.84.01.82.01.51.4
Ambulatory time after self-admin0.10.10.10.30.20.40.1
Bone: tissue strength1.31.32.6-0.80.4-1.3-1.6
Total heroin consumption0.20.20.60.80.30.30.3
Bone: trabecular number0.00.00.10.10.3-0.0-0.1
Bone: trabecular spacing0.00.00.0-0.2-0.1-0.2-0.1
Bone: trabecular thickness0.00.00.0-0.0-0.20.20.1
Bone: trabecular tissue density0.40.61.30.3-0.01.11.0
Water consumed over 24 hours0.40.51.20.40.00.81.1
Number of responses in last shaping day2.42.63.5-1.9-1.8-1.4-1.4