LOC103693474

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC103693474 0.07 0.03 2.8e-05 0.06 0.04 0.03 0.01 1.7e-06 4.6e-05 3.9e-04 1.3e-02
2 PL gene expression LOC103693474 0.11 0.05 1.3e-07 0.05 0.07 0.06 0.04 3.4e-06 6.1e-08 2.1e-07 2.2e-05
3 BLA gene expression LOC103693474 0.21 0.08 8.8e-08 0.16 0.14 0.1 0.15 8.5e-09 1.1e-07 2.9e-06 1.4e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.00.0-0.1-0.00.0
Area under the delay curve2.62.85.2-0.91.5-2.3
BMI with tail0.20.81.8-0.7-0.31.4
BMI without tail0.10.20.4-0.60.4-0.5
Body weight0.10.40.9-1.00.30.3
Weight adjusted by age0.20.30.4-0.6-0.2-0.7
Bone surface1.93.36.52.6-1.70.6
Bone volume0.91.63.61.9-1.10.0
Breakpoint value in progressive ratio session1.61.82.6-1.01.6-1.3
Number of licking bursts0.50.60.80.90.5-0.9
Context. condit. distance diff. score0.10.20.3-0.4-0.00.5
Locomotion velocity, session 10.30.30.50.50.5-0.7
Locomotion distance, session 10.00.00.10.3-0.20.0
Locomotion velocity, session 20.80.91.51.2-0.70.9
Locomotion distance, session 21.21.62.51.6-1.01.2
Locomotion velocity, session 30.10.20.2-0.50.3-0.3
Locomotion distance, session 32.12.33.41.4-1.31.8
Stereotopy head waving bouts, day 31.21.52.2-1.51.2-0.9
Stereotopy head waving duration, day 30.00.00.0-0.10.20.0
Locomotion velocity, session 73.74.04.92.0-1.82.2
Locomotion distance, session 76.38.09.42.8-2.63.1
Stereotopy head waving bouts, day 71.01.12.2-1.50.8-0.7
Stereotopy head waving duration, day 70.70.81.6-1.30.8-0.6
Locomotion velocity, session 81.01.21.91.4-0.61.1
Locomotion distance, session 81.82.73.61.4-1.61.9
Degree of sensitization distance0.80.81.10.9-1.10.7
Degree of sensitization stereotypy0.70.81.7-1.30.7-0.5
Conditioned locomotion0.10.10.2-0.0-0.30.5
Cocaine response after cond. corrected1.41.62.2-1.31.5-1.0
Cocaine response after cond. not corrected0.70.71.2-0.71.1-0.7
Cocaine response before conditioning1.62.02.41.5-1.41.3
Saline control response0.20.30.70.3-0.90.2
Bone: connectivity density0.40.60.80.6-0.90.8
Bone: cortical apparent density3.14.15.7-2.42.0-1.6
Bone: cortical area2.84.26.41.1-2.22.5
Bone: cortical porosity0.40.40.60.8-0.80.4
Bone: cortical porosity0.60.71.11.1-0.90.5
Bone: cortical thickness2.54.111.3-3.40.70.6
Bone: cortical thickness0.70.82.1-1.50.30.5
Bone: cortical tissue density3.44.55.9-2.42.1-1.8
Condit. Reinf. active minus inactive responses1.01.11.70.3-1.31.2
Condit. Reinf. active-inactive response ratio1.41.52.20.3-1.51.5
Condit. Reinf. active responses0.20.30.4-0.2-0.60.6
Condit. Reinf. inactive responses0.20.30.3-0.40.6-0.6
Incentive salience index mean0.20.20.4-0.2-0.60.5
Condit. Reinf. lever presses0.10.10.2-0.5-0.0-0.2
Condit. Reinf. active minus inactive responses0.81.01.70.6-0.91.3
Condit. Reinf. active-inactive response ratio0.70.81.11.0-0.80.8
Condit. Reinf. active responses1.11.52.50.8-1.11.6
Condit. Reinf. inactive responses0.60.81.50.2-0.91.2
Condit. Reinf. lever presses3.44.74.82.1-2.22.2
Condit. Reinf. lever reinforcers received1.72.43.51.2-1.51.9
Conditioned reinforcement - actives0.20.20.30.4-0.10.5
Conditioned reinforcement - inactives4.34.96.31.8-2.32.5
Conditioned locomotion0.10.10.20.5-0.40.3
Patch foraging indifference point 0 sec1.01.62.30.7-1.41.5
Patch foraging indifference point AUC1.31.42.61.6-1.20.6
Delay disc. indifference point, 0s delay0.80.81.0-1.00.8-0.9
Delay disc. indifference point, 16s delay0.30.30.80.10.2-0.9
Delay disc. indifference point, 2s delay5.05.510.1-1.32.2-3.2
Delay disc. indifference point, 24s delay0.30.30.60.40.2-0.8
Delay disc. indifference point, 4s delay3.23.45.0-1.31.9-2.2
Delay disc. indifference point, 8s delay2.32.44.2-1.01.4-2.0
Indifference point function ln k0.40.61.5-1.20.10.5
Indifference point function log k0.40.61.5-1.20.10.5
Patch foraging total patch changes 0 sec1.01.62.40.7-1.41.6
Patch foraging total patch changes 12 sec3.34.24.62.0-2.12.0
Patch foraging total patch changes 18 sec0.40.60.70.6-0.80.9
Patch foraging total patch changes 24 sec4.55.55.92.2-2.42.4
Patch foraging total patch changes 6 sec1.82.64.01.3-2.01.5
Patch foraging time to switch 0 sec0.20.30.50.10.7-0.6
Patch foraging water rate 0 sec0.20.30.60.2-0.80.5
Patch foraging water rate 12 sec0.81.22.8-1.70.8-0.5
Patch foraging water rate 18 sec0.40.60.8-0.6-0.70.9
Patch foraging water rate 24 sec1.01.43.0-0.5-1.01.7
Patch foraging water rate 6 sec1.01.52.8-1.71.1-0.6
Seeking ratio, delayed vs. immediate footshock0.10.10.3-0.0-0.50.1
Distance traveled before self-admin1.11.21.7-1.11.3-0.8
Distance traveled after self-admin0.00.00.10.1-0.0-0.3
Extensor digitorum longus weight0.00.10.30.20.40.5
Bone: elastic displacement1.51.74.4-2.10.8-0.3
Bone: elastic work0.70.91.3-1.1-0.61.0
Bone: endosteal estimation14.531.650.97.1-5.33.9
Bone: endosteal perimeter9.920.537.86.1-4.22.5
Epididymis fat weight0.00.10.20.1-0.5-0.0
Delta time in closed arm before/after self-admin4.44.35.82.4-1.82.0
Delta time in open arm before/after self-admin4.14.04.5-2.11.7-2.1
Diff in mean of infusions in LGA sessions0.70.80.9-0.90.9-0.8
Delay discount exponential model param3.33.56.31.0-1.72.5
Extinction: sum of active levers before priming0.50.50.90.8-0.31.0
Active lever presses in extinction session 60.30.30.8-0.10.4-0.9
Bone: final force4.97.911.11.9-3.03.3
Bone: final moment3.86.29.71.4-2.63.1
Food consumed during 24 hour testing period0.10.10.30.6-0.2-0.2
Glucose0.40.50.80.9-0.60.7
Heart weight2.84.05.41.6-2.32.0
Delay discount hyperbolic model param3.43.66.51.0-1.82.5
Intermittent access intake day 1-15 change2.32.32.5-1.41.5-1.6
Intermittent access intake escalation1.81.82.2-1.31.2-1.5
Intermittent access intake escalation 24.54.45.8-1.92.0-2.4
Intermitt. access day 1 inactive lever presses3.23.56.21.0-1.82.5
Intermitt. access day 15 inactive lever presses0.70.81.11.0-0.90.7
Intermitt. access escalation Index0.90.80.91.0-0.80.9
Intermittent access day 1 total infusions2.22.62.91.4-1.71.6
Intermittent access day 15 total infusions0.30.40.80.5-0.90.4
Intermittent access terminal intake (last 3 days)0.30.40.50.6-0.70.5
Intermittent access total infusions2.22.53.11.5-1.81.5
Intermittent access day 1 locomotion1.92.02.31.4-1.51.4
Intermittent access day 15 total locomotion0.50.60.90.3-1.00.8
Intermittent access total locomotion1.72.02.71.3-1.61.2
Intermittent access standard deviation0.00.00.1-0.3-0.0-0.2
Left kidney weight0.10.30.4-0.70.3-0.6
Right kidney weight0.20.71.2-1.10.5-0.8
Cocaine induced anxiety0.40.50.70.7-0.60.8
Post-drug Anxiety1.61.72.51.6-1.11.2
Baseline Anxiety0.10.10.20.30.4-0.4
Tail length0.41.33.50.20.5-1.9
Length with tail0.31.11.9-0.80.9-1.4
Length without tail0.20.51.0-1.00.60.3
Times rat made contact with spout3.33.87.0-1.11.8-2.6
Lifetime Intake3.13.54.11.7-2.01.9
Liver weight, left0.10.10.2-0.3-0.20.4
Liver weight, right0.30.51.3-0.3-0.51.1
Locomotor activity1.21.92.21.5-1.31.4
Locomotor testing distance1.21.92.81.0-1.41.7
Locomotor testing rearing0.10.10.20.2-0.50.3
Locomotion in novel chamber0.10.10.2-0.10.2-0.4
Locomotion in novel chamber post-restriction0.30.40.40.5-0.60.6
Fecal boli incidents, locomotor time 10.30.40.70.9-0.50.4
Change in fecal boli incidents, locomotor task0.50.40.9-1.00.5-0.4
Time >=10cm from walls, locomotor time 10.80.91.11.0-0.71.1
Bouts of movement, locomotor time 10.20.20.40.6-0.40.4
Total resting periods, locomotor time 10.10.10.20.50.10.0
Rest time, locomotor task time 10.30.40.5-0.70.7-0.3
Distance moved, locomotor task time 10.40.40.6-0.60.6-0.8
Vertical activity count, locomotor time 12.62.84.11.6-2.01.3
Time >=10cm from walls, locomotor time 20.00.00.0-0.00.1-0.0
Bouts of movement, locomotor time 21.31.42.0-0.91.4-1.2
Total resting periods, locomotor time 20.80.91.3-0.61.1-1.0
Rest time, locomotor task time 20.10.10.20.2-0.00.4
Distance moved, locomotor task time 20.10.10.2-0.20.2-0.4
Vertical activity count, locomotor time 20.10.10.40.0-0.60.1
Light reinforcement 11.01.82.50.7-1.61.5
Light reinforcement 22.43.23.82.0-1.91.6
Bone: marrow area14.331.150.07.1-5.33.9
Bone: maximum diameter8.916.421.84.7-4.03.4
Bone: maximum force5.69.611.62.5-3.33.4
Bone: maximum moment4.37.49.92.0-2.93.1
Mean time between licks in bursts0.40.60.91.0-0.70.7
Mean num. licks in bursts0.60.71.8-1.40.3-0.4
Cd content in liver0.50.51.20.1-0.51.1
Co content in liver1.11.21.3-1.11.2-1.1
Cu content in liver0.00.00.0-0.0-0.2-0.0
Fe content in liver1.11.32.30.6-1.21.5
K content in liver1.01.01.9-0.41.4-1.0
Mg content in liver0.30.30.50.10.5-0.7
Mn content in liver0.10.10.30.5-0.4-0.1
Na content in liver0.40.40.60.50.8-0.6
Rb content in liver0.20.30.40.6-0.60.3
Se content in liver1.01.32.6-0.31.0-1.6
Sr content in liver0.90.81.71.3-0.70.4
Zn content in liver0.20.20.3-0.50.5-0.2
Bone: minimum diameter4.99.212.33.5-3.22.3
Time in familiar zone, hab. session 10.10.10.2-0.2-0.30.4
Time in novel zone, hab. session 10.10.10.2-0.10.1-0.4
Total zone transitions, hab. session 10.20.30.7-0.30.2-0.8
Total locomotion distance, hab. session 10.20.40.90.2-1.00.3
Locomotion velocity, hab. session 10.20.30.60.4-0.80.4
Time in familiar zone, hab. session 20.90.91.1-1.01.0-0.9
Time in novel zone, hab. session 22.72.73.91.2-1.62.0
Total zone transitions, hab. session 20.30.40.70.9-0.50.4
Total locomotion distance, hab. session 20.10.20.20.4-0.50.4
Locomotion velocity, hab. session 20.10.10.20.4-0.30.2
Novel to familiar place preference ratio0.20.20.2-0.40.3-0.5
Novelty place preference0.00.00.0-0.20.1-0.2
Time in novel zone, NPP test0.00.00.0-0.0-0.20.1
Total zone transitions, NPP test0.40.50.90.9-0.60.5
Total locomotion distance, NPP test0.81.11.40.8-1.21.1
Locomotion velocity, NPP test0.20.30.40.4-0.60.5
Intraocular pressure1.01.42.11.4-1.01.0
Delta distance traveled before/after self-admin1.41.52.71.1-1.60.8
Delta ambulatory time before/after self-admin1.11.21.91.1-1.40.6
Parametrial fat weight0.51.01.51.2-1.00.7
Pavlov. Cond. lever latency1.51.92.21.5-1.21.5
Pavlov. Cond. magazine entry latency2.63.45.3-2.31.5-1.6
Pavlov. Cond. change in total contacts0.60.71.3-1.20.7-0.5
Pavlov. Cond. index score2.12.63.6-1.91.4-1.5
Pavlov. Cond. latency score2.83.64.5-2.11.7-1.9
Pavlov. Cond. lever contacts1.41.62.4-1.61.1-1.1
Pavlov. Cond. magazine entry number2.93.66.12.5-1.51.6
Pavlov. Cond. intertrial magazine entries0.40.50.60.8-0.70.6
Pavlov. Cond. lever-magazine prob. diff.1.72.12.9-1.71.2-1.3
Pavlov. Cond. response bias1.21.43.0-1.70.8-0.8
Pavlov. Cond. lever latency2.23.03.8-1.51.7-1.9
Pavlov. Cond. magazine entry latency4.75.57.02.2-2.12.6
Pavlov. Cond. change in total contacts4.76.59.12.3-2.23.0
Pavlov. Cond. index score4.35.66.82.3-2.22.6
Pavlov. Cond. latency score4.86.07.32.4-2.22.7
Pavlov. Cond. lever contacts1.72.32.51.4-1.51.6
Pavlov. Cond. magazine entry number5.66.89.5-2.42.3-3.1
Pavlov. Cond. intertrial magazine entries0.10.10.20.1-0.4-0.4
Pavlov. Cond. lever-magazine prob. diff.4.15.26.52.2-2.12.6
Pavlov. Cond. response bias2.63.54.61.7-1.82.1
Time in closed arm before self-admin0.00.00.10.1-0.3-0.1
Time in closed arm after self-admin2.52.62.81.7-1.61.6
Time in open arm before self-admin0.20.20.5-0.20.7-0.4
Time in open arm after self-admin0.20.30.6-0.00.4-0.8
Bone: periosteal estimation10.722.127.35.2-4.84.0
Bone: periosteal perimeter4.77.811.33.4-2.82.1
Bone: post-yield work4.35.97.82.8-2.61.8
Progressive ratio test 1 active lever presses0.60.60.80.8-0.90.7
Progressive ratio test 1 breakpoint0.60.60.70.7-0.90.8
Progressive ratio test 1 inactive lever presses4.24.66.71.6-2.12.6
Progressive ratio test 2 active lever presses0.70.81.11.1-0.90.6
Progressive ratio test 2 breakpoint0.70.81.31.1-0.90.6
Progressive ratio test 2 inactive lever presses2.12.42.71.5-1.51.6
Incentive Sensitization - Responses0.10.10.20.5-0.1-0.1
Incentive Sensitization - Breakpoint0.10.10.10.30.1-0.3
Sum of active levers in priming session hrs 5-60.40.40.5-0.70.5-0.5
Progressive ratio0.30.30.80.9-0.20.4
Food seeking constrained by brief footshock0.91.11.7-1.01.3-0.8
Seeking ratio, punishment vs. effort1.01.31.7-1.31.1-1.0
Retroperitoneal fat weight0.31.02.20.4-1.50.8
Reaction time number correct0.20.30.50.1-0.60.7
Reaction time mean minus median0.20.20.5-0.4-0.7-0.2
Reaction time mean minus median AUC0.70.91.80.1-1.40.9
Reaction time num false alarms0.00.00.10.1-0.10.2
Reaction time num false alarms AUC0.00.00.10.10.2-0.1
Reaction time trials correct on left0.20.30.50.1-0.60.7
Reaction time trials on left0.30.40.60.1-0.70.8
Reaction time mean0.50.71.70.4-1.30.5
Reaction time mean AUC1.11.52.70.7-1.61.1
Median of all reaction times0.81.12.10.7-1.40.9
Reaction time omissions0.91.22.00.7-1.41.1
Reaction time false alarm rate0.20.30.5-0.20.7-0.7
Reaction time premature initiation rate7.29.612.0-2.83.0-3.5
Reaction time premature initiations3.24.65.5-2.12.0-2.3
Std. dev. reaction times0.10.10.4-0.2-0.6-0.1
Reaction time trials completed0.30.40.60.1-0.70.8
Reaction time trials AUC0.40.50.80.3-0.80.9
Run reversals in cocaine runway, females1.01.01.2-1.01.1-0.8
Run reversals in cocaine runway, males0.00.00.1-0.30.1-0.1
Latency to leave start box in cocaine runway0.20.20.6-0.8-0.10.2
Latency to leave start box in cocaine runway, F1.01.12.5-1.60.7-0.6
Latency to leave start box in cocaine runway, M0.80.71.00.6-1.01.0
Std. dev. time between licks in bursts2.22.73.31.7-1.41.8
Total sessions with >9 infusions0.10.10.2-0.1-0.40.4
Short access day 1 total inactive lever presses3.94.35.51.7-2.22.3
Short access day 10 total inactive lever presses2.62.94.31.4-1.62.1
Short access day 1 total infusions1.31.42.60.7-1.01.6
Short access day 10 total infusions1.71.92.61.0-1.61.4
Short access total infusions3.03.43.91.6-2.02.0
Short access day 1 locomotion0.40.40.7-0.0-0.80.7
Short access day 10 total locomotion0.50.61.01.0-0.80.4
Short access total locomotion0.10.10.30.1-0.50.4
One hour access (0.3 mA shock)1.01.21.21.1-1.11.0
Compulsive drug intake0.70.71.20.7-0.61.1
One hour access (shock baseline)0.10.10.20.5-0.3-0.0
Social response proportion0.50.51.2-1.10.2-0.6
Social responses0.40.51.5-1.2-0.20.1
Social time0.30.51.20.1-1.10.3
Soleus weight0.31.01.81.3-0.60.8
Bone: stiffness5.58.79.22.8-3.03.0
Tibialis anterior weight0.00.00.1-0.20.30.1
Time to tail flick, vehicle, before self-admin0.50.50.60.8-0.70.6
Time to tail flick, vehicle, after self-admin1.11.21.7-0.81.1-1.3
Time to tail flick, test, before self-admin1.51.42.4-0.31.3-1.5
Time to tail flick, test, after self-admin0.80.81.5-0.51.2-0.8
Delta time to tail flick, vehicle, before/after SA2.02.02.2-1.41.3-1.5
Delta time to tail flick, test, before/after SA0.30.20.70.20.00.8
Tibia length0.30.92.2-1.50.8-0.2
Ambulatory time before self-admin1.61.62.0-1.41.4-0.9
Ambulatory time after self-admin0.10.10.3-0.10.3-0.5
Bone: tissue strength1.01.01.9-0.4-1.01.4
Total heroin consumption0.30.30.80.30.9-0.3
Bone: trabecular number0.10.20.2-0.40.4-0.3
Bone: trabecular spacing0.00.00.1-0.1-0.10.3
Bone: trabecular thickness0.10.10.10.30.1-0.3
Bone: trabecular tissue density0.20.30.80.10.2-0.9
Water consumed over 24 hours0.20.30.80.10.2-0.9
Number of responses in last shaping day1.21.22.20.9-1.50.8