LOC103692581

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose alternative TSS XR_001838302.3 0.1 0.07 5.0e-06 0.03 0.03 0.03 0.02 1.6e-04 1.0e-04 1.4e-04 2.5e-03
2 Brain gene expression LOC103692581 0.05 0.03 1.6e-04 0.05 0.04 0.04 0.04 1.4e-05 7.9e-05 4.8e-05 5.2e-05
3 Adipose gene expression LOC103692581 0.3 0.11 9.4e-15 0.08 0.09 0.1 0.07 7.8e-09 6.5e-10 6.0e-11 2.0e-08
4 PL gene expression LOC103692581 0.07 0.05 1.4e-05 0.03 0.04 0.03 0.04 4.3e-04 9.2e-05 6.5e-04 7.8e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density4.07.08.5-2.52.52.62.9
Area under the delay curve0.20.20.5-0.70.40.50.3
BMI with tail1.55.19.03.0-2.4-2.1-1.2
BMI without tail1.03.06.32.5-1.8-1.6-0.3
Body weight1.35.87.82.7-2.8-2.2-1.8
Weight adjusted by age0.20.20.3-0.20.50.60.6
Bone surface0.40.71.0-0.70.80.71.0
Bone volume1.52.73.2-1.61.71.51.8
Breakpoint value in progressive ratio session2.93.55.1-1.82.31.61.7
Number of licking bursts2.43.94.32.0-2.1-2.1-1.7
Context. condit. distance diff. score1.11.32.8-0.50.81.21.7
Locomotion velocity, session 10.70.71.00.9-1.0-0.7-0.8
Locomotion distance, session 10.50.61.0-0.90.81.00.4
Locomotion velocity, session 20.81.01.81.1-0.8-1.3-0.6
Locomotion distance, session 20.00.00.1-0.10.0-0.1-0.3
Locomotion velocity, session 30.30.40.6-0.50.50.60.8
Locomotion distance, session 30.91.01.3-1.00.71.11.1
Stereotopy head waving bouts, day 31.61.92.3-1.41.51.21.4
Stereotopy head waving duration, day 30.00.00.0-0.10.0-0.10.1
Locomotion velocity, session 70.00.00.1-0.00.2-0.30.2
Locomotion distance, session 70.40.60.70.9-0.8-0.9-0.3
Stereotopy head waving bouts, day 70.10.10.10.0-0.30.0-0.4
Stereotopy head waving duration, day 70.10.10.2-0.3-0.00.4-0.1
Locomotion velocity, session 80.40.51.3-0.30.50.51.2
Locomotion distance, session 82.02.94.2-1.31.71.62.1
Degree of sensitization distance2.93.04.12.0-1.7-1.8-1.4
Degree of sensitization stereotypy0.60.61.20.6-0.9-0.4-1.1
Conditioned locomotion3.13.64.7-1.71.72.22.0
Cocaine response after cond. corrected0.10.10.20.4-0.2-0.2-0.1
Cocaine response after cond. not corrected0.00.00.0-0.2-0.00.2-0.2
Cocaine response before conditioning0.70.92.2-1.50.41.00.3
Saline control response0.91.22.6-1.60.91.10.5
Bone: connectivity density1.32.03.5-1.11.21.31.9
Bone: cortical apparent density0.10.10.20.0-0.3-0.4-0.4
Bone: cortical area0.20.30.70.5-0.3-0.4-0.9
Bone: cortical porosity0.20.20.3-0.50.40.50.4
Bone: cortical porosity0.40.50.7-0.60.60.60.8
Bone: cortical thickness0.91.43.10.8-0.9-1.0-1.8
Bone: cortical thickness0.30.40.7-0.80.60.7-0.0
Bone: cortical tissue density0.10.20.30.1-0.4-0.5-0.4
Condit. Reinf. active minus inactive responses4.95.46.22.5-2.3-2.5-2.0
Condit. Reinf. active-inactive response ratio2.52.73.31.7-1.7-1.8-1.3
Condit. Reinf. active responses1.11.41.81.3-1.3-1.2-0.9
Condit. Reinf. inactive responses0.70.91.3-0.70.81.11.2
Incentive salience index mean1.41.71.91.3-1.3-1.4-1.2
Condit. Reinf. lever presses0.40.51.1-1.00.50.80.2
Condit. Reinf. active minus inactive responses0.10.10.30.5-0.20.10.1
Condit. Reinf. active-inactive response ratio0.10.10.20.5-0.10.30.1
Condit. Reinf. active responses0.10.20.30.4-0.4-0.1-0.5
Condit. Reinf. inactive responses0.10.10.3-0.3-0.20.1-0.6
Condit. Reinf. lever presses0.10.20.6-0.0-0.2-0.3-0.8
Condit. Reinf. lever reinforcers received0.30.50.60.7-0.7-0.5-0.8
Conditioned reinforcement - actives1.93.25.4-1.72.31.51.5
Conditioned reinforcement - inactives0.71.01.7-1.31.20.60.7
Conditioned locomotion0.40.51.4-1.20.7-0.00.0
Patch foraging indifference point 0 sec0.20.40.7-0.70.50.50.8
Patch foraging indifference point AUC0.10.20.50.30.00.40.7
Delay disc. indifference point, 0s delay0.40.50.60.7-0.6-0.7-0.8
Delay disc. indifference point, 16s delay0.70.81.0-1.00.90.90.6
Delay disc. indifference point, 2s delay0.20.20.40.2-0.4-0.6-0.5
Delay disc. indifference point, 24s delay4.65.26.8-2.22.62.32.0
Delay disc. indifference point, 4s delay0.10.10.3-0.60.10.30.1
Delay disc. indifference point, 8s delay0.70.81.0-1.01.00.90.7
Indifference point function ln k0.71.22.3-1.51.11.00.3
Indifference point function log k0.71.22.3-1.51.11.00.3
Patch foraging total patch changes 0 sec0.20.40.6-0.70.50.50.8
Patch foraging total patch changes 12 sec0.10.10.30.4-0.5-0.2-0.0
Patch foraging total patch changes 18 sec0.30.41.30.10.10.51.1
Patch foraging total patch changes 24 sec0.10.10.10.3-0.3-0.3-0.0
Patch foraging total patch changes 6 sec0.10.10.10.4-0.1-0.30.3
Patch foraging time to switch 0 sec0.10.20.50.5-0.3-0.70.0
Patch foraging water rate 0 sec1.53.14.7-2.21.71.91.2
Patch foraging water rate 12 sec0.20.41.10.1-0.6-0.5-1.1
Patch foraging water rate 18 sec1.21.83.7-1.91.11.50.1
Patch foraging water rate 24 sec0.00.00.1-0.30.10.3-0.0
Patch foraging water rate 6 sec0.20.30.8-0.90.50.5-0.2
Seeking ratio, delayed vs. immediate footshock1.21.42.91.7-0.4-1.4-0.8
Distance traveled before self-admin0.00.00.00.10.10.2-0.1
Distance traveled after self-admin0.20.30.90.20.90.30.4
Extensor digitorum longus weight1.35.26.0-2.42.42.22.0
Bone: elastic displacement0.91.01.3-1.01.01.20.9
Bone: elastic work1.21.62.2-1.31.51.20.8
Bone: endosteal estimation0.51.02.2-0.51.10.81.5
Bone: endosteal perimeter0.10.20.4-0.20.40.50.7
Epididymis fat weight10.836.946.96.5-6.9-5.2-5.5
Delta time in closed arm before/after self-admin0.60.50.8-0.60.60.90.8
Delta time in open arm before/after self-admin0.70.71.20.9-1.1-0.5-0.7
Diff in mean of infusions in LGA sessions0.10.20.4-0.30.60.20.3
Delay discount exponential model param0.60.61.11.0-0.7-0.8-0.6
Extinction: sum of active levers before priming3.33.64.1-1.82.02.01.7
Active lever presses in extinction session 63.03.05.3-1.22.31.51.7
Bone: final force0.30.40.60.6-0.5-0.7-0.8
Bone: final moment0.10.20.30.5-0.3-0.5-0.6
Food consumed during 24 hour testing period0.60.81.40.8-1.2-0.8-0.9
Glucose0.81.22.21.1-1.5-0.9-0.7
Heart weight1.32.02.81.7-1.5-1.4-1.0
Delay discount hyperbolic model param0.20.20.50.7-0.3-0.5-0.3
Intermittent access intake day 1-15 change0.71.42.3-1.21.50.81.1
Intermittent access intake escalation0.51.01.7-1.01.30.60.9
Intermittent access intake escalation 20.81.02.2-0.61.50.41.1
Intermitt. access day 1 inactive lever presses0.10.50.90.5-1.0-0.7-0.6
Intermitt. access day 15 inactive lever presses0.10.20.40.5-0.6-0.4-0.3
Intermitt. access escalation Index1.01.42.61.6-1.0-1.3-0.5
Intermittent access day 1 total infusions0.30.51.3-1.10.40.60.1
Intermittent access day 15 total infusions0.71.12.1-1.51.30.70.5
Intermittent access terminal intake (last 3 days)0.71.01.9-1.41.30.50.0
Intermittent access total infusions1.01.23.3-1.80.90.80.2
Intermittent access day 1 locomotion0.50.71.4-0.5-0.7-0.7-1.2
Intermittent access day 15 total locomotion0.51.02.10.2-1.0-0.9-1.4
Intermittent access total locomotion0.50.51.1-0.9-0.2-0.4-1.0
Intermittent access standard deviation0.40.91.3-1.10.80.81.0
Left kidney weight0.10.40.60.8-0.8-0.5-0.3
Right kidney weight0.52.22.91.7-1.7-1.3-1.1
Cocaine induced anxiety0.81.21.6-1.11.10.91.3
Post-drug Anxiety0.20.20.30.6-0.60.0-0.1
Baseline Anxiety3.84.45.42.3-2.2-1.6-2.2
Tail length0.10.40.8-0.90.40.60.4
Length with tail0.10.61.20.1-0.9-0.6-1.1
Length without tail0.10.20.7-0.3-0.50.0-0.8
Times rat made contact with spout2.32.73.2-1.81.41.81.6
Lifetime Intake0.80.92.9-1.70.60.70.0
Liver weight, left2.03.36.21.2-1.7-1.6-2.5
Liver weight, right2.74.76.12.5-2.2-2.3-1.6
Locomotor activity1.82.73.31.7-1.8-1.8-1.3
Locomotor testing distance1.11.92.91.3-1.7-1.5-0.9
Locomotor testing rearing0.50.91.60.8-1.0-1.2-0.7
Locomotion in novel chamber1.41.72.70.6-1.5-1.3-1.7
Locomotion in novel chamber post-restriction1.01.62.41.0-1.5-0.9-1.5
Fecal boli incidents, locomotor time 11.21.73.3-1.81.01.21.1
Change in fecal boli incidents, locomotor task0.10.10.20.4-0.5-0.1-0.3
Time >=10cm from walls, locomotor time 10.00.00.1-0.2-0.30.10.0
Bouts of movement, locomotor time 10.20.30.9-0.90.3-0.1-0.2
Total resting periods, locomotor time 10.20.20.7-0.80.1-0.2-0.1
Rest time, locomotor task time 10.10.20.5-0.3-0.2-0.7-0.3
Distance moved, locomotor task time 10.20.30.90.9-0.6-0.1-0.2
Vertical activity count, locomotor time 10.00.00.10.2-0.10.1-0.2
Time >=10cm from walls, locomotor time 20.20.30.5-0.7-0.50.60.4
Bouts of movement, locomotor time 20.00.00.1-0.30.0-0.3-0.2
Total resting periods, locomotor time 20.00.00.1-0.2-0.1-0.3-0.2
Rest time, locomotor task time 20.10.10.40.0-0.4-0.6-0.1
Distance moved, locomotor task time 20.00.00.10.30.00.0-0.3
Vertical activity count, locomotor time 20.00.10.1-0.40.20.3-0.1
Light reinforcement 10.00.00.0-0.20.1-0.2-0.1
Light reinforcement 20.71.01.6-1.00.71.30.9
Bone: marrow area0.40.92.0-0.51.00.71.4
Bone: maximum diameter0.20.40.8-0.40.70.90.4
Bone: maximum force0.00.10.20.20.2-0.5-0.2
Bone: maximum moment0.00.10.20.10.5-0.30.1
Mean time between licks in bursts0.41.01.21.1-1.1-1.0-0.9
Mean num. licks in bursts5.17.99.0-2.92.83.02.6
Cd content in liver0.50.61.11.1-1.1-0.2-0.2
Co content in liver0.70.81.1-1.11.00.90.6
Cu content in liver0.50.61.20.8-0.6-1.1-0.1
Fe content in liver1.51.82.5-1.41.31.11.6
K content in liver1.11.11.51.2-1.2-1.0-0.6
Mg content in liver0.10.10.20.4-0.4-0.4-0.0
Mn content in liver0.50.51.20.5-0.5-1.1-0.5
Na content in liver0.70.81.3-1.10.80.80.6
Rb content in liver0.10.20.20.4-0.5-0.20.5
Se content in liver0.40.50.80.3-0.5-0.9-0.8
Sr content in liver2.32.03.2-1.81.51.11.2
Zn content in liver2.12.32.91.7-1.6-1.4-1.3
Bone: minimum diameter1.42.53.31.7-1.4-1.8-1.4
Time in familiar zone, hab. session 10.80.81.10.8-0.7-1.0-1.0
Time in novel zone, hab. session 10.30.30.60.7-0.6-0.60.1
Total zone transitions, hab. session 10.50.61.2-1.00.51.10.4
Total locomotion distance, hab. session 10.50.71.5-1.20.70.90.2
Locomotion velocity, hab. session 10.91.32.5-1.61.01.30.4
Time in familiar zone, hab. session 20.10.10.3-0.10.5-0.50.3
Time in novel zone, hab. session 20.60.71.21.0-1.1-0.5-0.4
Total zone transitions, hab. session 21.01.31.9-1.30.91.41.0
Total locomotion distance, hab. session 21.01.41.5-1.21.01.21.2
Locomotion velocity, hab. session 21.31.82.1-1.41.11.51.3
Novel to familiar place preference ratio0.70.71.60.9-0.6-1.3-0.5
Novelty place preference1.41.52.81.3-0.9-1.7-0.9
Time in novel zone, NPP test1.31.42.71.2-0.8-1.6-0.8
Total zone transitions, NPP test1.42.03.2-1.31.01.81.4
Total locomotion distance, NPP test2.02.73.2-1.71.41.71.8
Locomotion velocity, NPP test2.33.24.1-2.01.42.01.6
Intraocular pressure1.31.82.71.7-1.3-1.2-1.1
Delta distance traveled before/after self-admin0.20.30.70.8-0.2-0.5-0.2
Delta ambulatory time before/after self-admin0.10.10.30.10.6-0.00.5
Parametrial fat weight19.746.253.97.3-7.3-6.3-6.2
Pavlov. Cond. lever latency0.40.50.80.8-0.4-0.9-0.5
Pavlov. Cond. magazine entry latency0.91.11.9-0.90.71.41.0
Pavlov. Cond. change in total contacts0.40.40.6-0.70.80.40.5
Pavlov. Cond. index score0.70.91.3-1.10.71.10.9
Pavlov. Cond. latency score0.70.91.2-1.00.61.10.9
Pavlov. Cond. lever contacts0.50.61.1-1.00.51.10.5
Pavlov. Cond. magazine entry number1.51.92.51.2-1.1-1.5-1.6
Pavlov. Cond. intertrial magazine entries1.61.92.4-1.61.31.41.2
Pavlov. Cond. lever-magazine prob. diff.1.21.51.9-1.31.01.41.1
Pavlov. Cond. response bias2.12.63.5-1.61.41.91.6
Pavlov. Cond. lever latency0.00.00.10.3-0.0-0.1-0.1
Pavlov. Cond. magazine entry latency0.40.51.11.1-0.7-0.70.0
Pavlov. Cond. change in total contacts0.30.50.80.8-0.9-0.6-0.6
Pavlov. Cond. index score0.00.10.10.3-0.3-0.20.0
Pavlov. Cond. latency score0.00.10.10.3-0.3-0.20.2
Pavlov. Cond. lever contacts0.00.00.1-0.0-0.3-0.1-0.2
Pavlov. Cond. magazine entry number0.50.71.3-1.10.90.80.1
Pavlov. Cond. intertrial magazine entries0.10.20.40.2-0.2-0.5-0.7
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.4-0.4-0.30.0
Pavlov. Cond. response bias0.00.00.0-0.1-0.20.10.2
Time in closed arm before self-admin0.10.10.50.3-0.70.10.1
Time in closed arm after self-admin0.90.91.11.1-1.0-0.8-1.0
Time in open arm before self-admin0.00.10.1-0.30.20.0-0.2
Time in open arm after self-admin0.00.00.1-0.2-0.1-0.0-0.1
Bone: periosteal estimation0.10.20.4-0.20.70.40.6
Bone: periosteal perimeter0.10.20.3-0.50.30.50.1
Bone: post-yield work2.23.23.8-1.71.81.61.9
Progressive ratio test 1 active lever presses0.20.30.5-0.6-0.3-0.4-0.7
Progressive ratio test 1 breakpoint0.20.20.5-0.7-0.2-0.2-0.6
Progressive ratio test 1 inactive lever presses0.91.32.1-0.0-1.5-1.4-1.1
Progressive ratio test 2 active lever presses1.11.32.4-1.51.50.70.3
Progressive ratio test 2 breakpoint1.01.22.2-1.51.50.60.1
Progressive ratio test 2 inactive lever presses0.10.20.7-0.80.30.10.1
Incentive Sensitization - Responses1.11.54.0-1.02.00.80.6
Incentive Sensitization - Breakpoint0.91.23.5-0.91.90.60.3
Sum of active levers in priming session hrs 5-61.11.11.7-0.91.00.91.3
Progressive ratio0.40.61.21.0-1.1-0.6-0.1
Food seeking constrained by brief footshock4.96.08.5-2.92.12.62.0
Seeking ratio, punishment vs. effort1.92.83.8-2.01.81.71.1
Retroperitoneal fat weight25.7109.6128.511.2-11.3-9.9-9.3
Reaction time number correct0.00.10.30.1-0.60.10.1
Reaction time mean minus median0.30.70.90.9-0.9-0.8-0.8
Reaction time mean minus median AUC0.41.11.41.2-1.1-1.0-0.9
Reaction time num false alarms0.30.50.70.8-0.8-0.5-0.5
Reaction time num false alarms AUC0.30.50.80.7-0.9-0.5-0.7
Reaction time trials correct on left0.00.10.30.1-0.60.10.1
Reaction time trials on left0.10.10.40.1-0.6-0.0-0.0
Reaction time mean0.20.30.70.5-0.1-0.8-0.6
Reaction time mean AUC0.20.30.70.5-0.1-0.8-0.6
Median of all reaction times0.10.10.40.10.3-0.6-0.3
Reaction time omissions0.20.40.70.8-0.5-0.6-0.3
Reaction time false alarm rate0.20.30.60.6-0.5-0.4-0.8
Reaction time premature initiation rate0.30.40.9-1.00.20.90.2
Reaction time premature initiations0.20.40.7-0.8-0.10.80.3
Std. dev. reaction times0.20.40.60.8-0.6-0.7-0.6
Reaction time trials completed0.10.10.40.1-0.6-0.0-0.0
Reaction time trials AUC0.10.20.50.2-0.7-0.2-0.2
Run reversals in cocaine runway, females1.61.62.2-0.91.31.21.5
Run reversals in cocaine runway, males0.20.20.4-0.20.60.3-0.3
Latency to leave start box in cocaine runway3.13.54.7-1.51.72.02.2
Latency to leave start box in cocaine runway, F2.32.63.8-1.11.51.91.7
Latency to leave start box in cocaine runway, M1.21.11.8-1.00.80.91.4
Std. dev. time between licks in bursts0.40.50.80.5-0.6-0.9-0.9
Total sessions with >9 infusions0.50.61.7-1.3-0.4-0.1-0.7
Short access day 1 total inactive lever presses0.30.31.2-1.1-0.20.20.3
Short access day 10 total inactive lever presses0.10.30.9-0.3-0.40.20.9
Short access day 1 total infusions0.20.30.6-0.8-0.6-0.1-0.2
Short access day 10 total infusions1.01.33.3-1.80.71.10.3
Short access total infusions0.30.41.3-1.1-0.30.2-0.4
Short access day 1 locomotion0.20.30.4-0.6-0.4-0.5-0.7
Short access day 10 total locomotion0.10.20.4-0.7-0.4-0.4-0.3
Short access total locomotion0.50.60.7-0.8-0.8-0.7-0.9
One hour access (0.3 mA shock)3.23.65.7-2.12.41.21.7
Compulsive drug intake0.30.40.60.8-0.6-0.60.1
One hour access (shock baseline)1.92.94.8-2.22.11.31.0
Social response proportion0.20.20.80.30.1-0.9-0.4
Social responses0.60.71.31.0-0.5-1.1-0.5
Social time0.20.30.8-0.70.1-0.2-0.9
Soleus weight4.312.614.7-3.83.43.73.2
Bone: stiffness0.61.01.51.2-0.7-1.2-0.8
Tibialis anterior weight1.55.26.2-2.42.52.31.9
Time to tail flick, vehicle, before self-admin0.60.61.40.0-0.7-0.6-1.2
Time to tail flick, vehicle, after self-admin1.92.54.01.5-2.0-1.5-1.2
Time to tail flick, test, before self-admin1.11.21.8-1.31.30.90.6
Time to tail flick, test, after self-admin1.11.22.6-1.60.80.90.8
Delta time to tail flick, vehicle, before/after SA0.20.20.40.5-0.6-0.10.2
Delta time to tail flick, test, before/after SA0.50.51.2-1.10.20.50.8
Tibia length2.05.66.52.5-2.4-2.3-2.2
Ambulatory time before self-admin0.00.00.10.10.30.2-0.2
Ambulatory time after self-admin0.20.30.70.50.90.00.3
Bone: tissue strength0.30.30.70.20.3-0.8-0.7
Total heroin consumption3.64.35.4-2.32.31.61.9
Bone: trabecular number3.45.76.5-2.42.32.32.5
Bone: trabecular spacing2.53.34.11.8-1.5-1.9-2.0
Bone: trabecular thickness1.92.43.0-1.61.31.71.4
Bone: trabecular tissue density0.10.20.6-0.3-0.20.80.4
Water consumed over 24 hours0.10.20.30.5-0.3-0.50.4
Number of responses in last shaping day0.30.30.6-0.8-0.30.50.6