LOC103691511

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC103691511 0.05 0.04 9.9e-03 0.01 0 -0 0.01 5.3e-02 1.1e-01 3.8e-01 7.3e-02
2 Adipose mRNA stability LOC103691511 0.12 0.08 8.0e-11 0.03 0.06 0.04 0.05 2.1e-04 1.0e-06 8.7e-06 5.1e-06
3 IL gene expression LOC103691511 0.27 0.16 8.8e-03 -0.01 -0.01 -0 0.05 5.1e-01 4.8e-01 3.7e-01 2.7e-02
4 Adipose gene expression LOC103691511 0.07 0.05 3.0e-06 0.02 0.04 0.03 0.03 8.7e-04 4.3e-05 9.3e-05 1.6e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.03.35.6-2.41.92.0-0.2
Area under the delay curve1.31.32.21.5-1.3-1.20.3
BMI with tail0.93.06.80.6-1.8-1.32.6
BMI without tail2.65.57.41.6-2.7-2.32.6
Body weight0.31.44.40.2-0.9-0.62.1
Weight adjusted by age0.10.10.3-0.2-0.10.40.5
Bone surface4.88.414.1-3.83.03.20.4
Bone volume4.78.013.4-3.72.93.20.5
Breakpoint value in progressive ratio session1.01.11.41.2-1.1-0.71.2
Number of licking bursts0.91.02.2-1.51.01.0-0.2
Context. condit. distance diff. score0.30.40.60.8-0.5-0.8-0.4
Locomotion velocity, session 11.92.02.61.4-1.6-1.51.2
Locomotion distance, session 10.70.92.50.5-0.7-0.51.6
Locomotion velocity, session 21.41.62.11.2-1.4-1.21.3
Locomotion distance, session 20.91.24.40.2-0.6-0.12.1
Locomotion velocity, session 30.10.10.30.5-0.2-0.3-0.2
Locomotion distance, session 30.20.30.5-0.30.60.70.3
Stereotopy head waving bouts, day 30.30.41.2-0.20.20.51.1
Stereotopy head waving duration, day 30.40.50.70.8-0.7-0.50.8
Locomotion velocity, session 76.36.910.5-2.83.03.20.6
Locomotion distance, session 73.74.76.8-2.32.62.5-0.8
Stereotopy head waving bouts, day 70.40.51.20.7-0.5-0.21.1
Stereotopy head waving duration, day 71.01.21.81.4-1.2-1.10.7
Locomotion velocity, session 83.13.75.11.9-2.3-2.11.2
Locomotion distance, session 80.91.41.51.2-1.2-1.01.2
Degree of sensitization distance0.70.71.6-1.30.70.7-0.3
Degree of sensitization stereotypy1.31.41.81.2-1.3-1.11.0
Conditioned locomotion0.10.20.20.4-0.4-0.40.4
Cocaine response after cond. corrected0.70.81.0-1.00.90.7-0.9
Cocaine response after cond. not corrected1.41.51.9-1.41.31.2-1.1
Cocaine response before conditioning0.40.50.9-0.80.71.00.1
Saline control response2.22.84.0-2.01.72.00.7
Bone: connectivity density1.82.94.5-2.11.91.8-0.5
Bone: cortical apparent density1.31.72.71.6-1.4-1.50.3
Bone: cortical area0.81.22.0-1.40.81.21.0
Bone: cortical porosity0.30.30.4-0.70.40.60.6
Bone: cortical porosity0.20.20.5-0.40.20.40.7
Bone: cortical thickness0.40.61.9-0.70.10.51.4
Bone: cortical thickness1.31.52.50.4-1.6-1.11.5
Bone: cortical tissue density1.41.82.81.7-1.4-1.50.3
Condit. Reinf. active minus inactive responses2.83.110.80.4-1.2-0.33.3
Condit. Reinf. active-inactive response ratio3.53.812.50.5-1.5-0.63.5
Condit. Reinf. active responses2.42.910.90.3-0.90.13.3
Condit. Reinf. inactive responses0.10.10.30.5-0.00.20.5
Incentive salience index mean2.93.612.30.5-1.3-0.33.5
Condit. Reinf. lever presses1.31.75.00.7-1.1-0.52.2
Condit. Reinf. active minus inactive responses4.96.19.3-3.12.62.80.8
Condit. Reinf. active-inactive response ratio3.33.55.4-2.31.82.10.8
Condit. Reinf. active responses5.77.911.1-3.33.03.30.7
Condit. Reinf. inactive responses0.40.50.9-0.50.81.00.3
Condit. Reinf. lever presses2.43.34.6-2.11.92.10.6
Condit. Reinf. lever reinforcers received6.08.412.0-3.53.13.40.6
Conditioned reinforcement - actives2.52.54.3-1.52.11.7-0.6
Conditioned reinforcement - inactives0.10.10.30.00.30.60.1
Conditioned locomotion1.61.93.2-1.61.81.4-0.3
Patch foraging indifference point 0 sec0.50.82.2-0.70.70.4-1.5
Patch foraging indifference point AUC0.30.40.80.2-0.9-0.8-0.0
Delay disc. indifference point, 0s delay0.10.10.2-0.3-0.0-0.3-0.4
Delay disc. indifference point, 16s delay1.71.73.61.9-1.4-1.20.2
Delay disc. indifference point, 2s delay0.60.62.4-0.3-0.20.11.6
Delay disc. indifference point, 24s delay0.30.30.60.8-0.5-0.4-0.3
Delay disc. indifference point, 4s delay2.02.12.91.7-1.7-1.60.4
Delay disc. indifference point, 8s delay0.60.61.01.0-0.6-0.6-0.7
Indifference point function ln k0.30.40.90.9-0.5-0.8-0.1
Indifference point function log k0.30.40.90.9-0.5-0.8-0.1
Patch foraging total patch changes 0 sec0.40.62.2-0.30.2-0.1-1.5
Patch foraging total patch changes 12 sec0.60.71.7-1.00.30.2-1.3
Patch foraging total patch changes 18 sec0.50.61.10.7-1.0-0.9-0.1
Patch foraging total patch changes 24 sec0.40.51.10.3-0.4-0.8-1.0
Patch foraging total patch changes 6 sec0.20.30.6-0.0-0.5-0.6-0.8
Patch foraging time to switch 0 sec1.11.75.50.8-0.7-0.22.4
Patch foraging water rate 0 sec0.30.51.7-0.4-0.2-0.4-1.3
Patch foraging water rate 12 sec0.81.22.1-0.51.20.9-1.4
Patch foraging water rate 18 sec0.60.81.4-1.20.80.7-0.6
Patch foraging water rate 24 sec0.60.91.40.9-0.5-1.0-1.2
Patch foraging water rate 6 sec1.31.92.3-1.21.51.3-1.4
Seeking ratio, delayed vs. immediate footshock6.27.28.9-2.53.02.7-2.4
Distance traveled before self-admin0.20.20.50.7-0.1-0.2-0.4
Distance traveled after self-admin0.40.50.80.9-0.3-0.4-0.9
Extensor digitorum longus weight6.826.934.64.8-5.9-4.95.1
Bone: elastic displacement0.50.61.5-0.30.40.81.2
Bone: elastic work0.70.91.3-1.00.71.01.1
Bone: endosteal estimation1.83.96.2-2.52.02.21.0
Bone: endosteal perimeter0.81.72.5-1.61.51.5-0.0
Epididymis fat weight0.71.62.21.5-0.9-1.5-1.1
Delta time in closed arm before/after self-admin0.20.20.50.10.0-0.3-0.7
Delta time in open arm before/after self-admin0.00.00.0-0.00.10.1-0.2
Diff in mean of infusions in LGA sessions1.01.13.30.3-0.9-0.61.8
Delay discount exponential model param0.91.01.7-1.31.10.9-0.2
Extinction: sum of active levers before priming0.40.40.70.1-0.8-0.60.7
Active lever presses in extinction session 60.10.10.3-0.00.50.4-0.4
Bone: final force0.71.12.0-1.40.60.91.1
Bone: final moment0.91.52.8-1.71.01.20.8
Food consumed during 24 hour testing period0.91.11.90.7-1.2-0.81.4
Glucose0.61.01.50.6-1.2-0.81.2
Heart weight0.71.02.4-0.41.00.5-1.5
Delay discount hyperbolic model param1.11.21.8-1.31.31.1-0.4
Intermittent access intake day 1-15 change2.72.75.3-1.21.71.1-2.3
Intermittent access intake escalation2.22.23.9-1.21.51.0-2.0
Intermittent access intake escalation 24.14.04.9-2.02.21.9-1.9
Intermitt. access day 1 inactive lever presses3.74.06.92.6-1.8-2.3-0.6
Intermitt. access day 15 inactive lever presses2.32.65.02.2-1.1-1.4-1.5
Intermitt. access escalation Index0.20.20.30.5-0.4-0.4-0.2
Intermittent access day 1 total infusions1.82.13.6-1.41.71.9-0.4
Intermittent access day 15 total infusions5.15.78.1-2.12.82.7-1.8
Intermittent access terminal intake (last 3 days)5.66.17.7-2.32.82.7-2.0
Intermittent access total infusions3.43.75.0-1.82.22.2-1.4
Intermittent access day 1 locomotion0.50.51.1-0.50.81.1-0.3
Intermittent access day 15 total locomotion1.41.52.5-1.61.21.4-0.2
Intermittent access total locomotion0.91.01.5-0.91.11.2-0.8
Intermittent access standard deviation2.32.47.4-0.41.30.6-2.7
Left kidney weight0.61.64.3-0.51.10.7-2.1
Right kidney weight0.41.14.3-0.40.3-0.1-2.1
Cocaine induced anxiety0.70.81.81.3-0.8-0.7-0.4
Post-drug Anxiety2.52.84.32.1-1.7-1.90.7
Baseline Anxiety0.20.20.6-0.50.10.00.7
Tail length0.31.01.40.9-1.2-1.10.7
Length with tail0.00.10.1-0.30.20.10.3
Length without tail0.81.82.6-1.61.61.4-0.1
Times rat made contact with spout0.10.10.1-0.10.20.3-0.3
Lifetime Intake2.93.34.3-1.62.12.0-1.6
Liver weight, left0.91.52.71.3-1.2-0.61.6
Liver weight, right0.20.30.60.5-0.7-0.6-0.1
Locomotor activity0.00.00.10.3-0.1-0.10.0
Locomotor testing distance0.00.00.10.30.00.10.2
Locomotor testing rearing0.40.70.9-0.31.01.0-0.9
Locomotion in novel chamber0.40.41.20.1-0.6-0.31.1
Locomotion in novel chamber post-restriction0.20.20.50.7-0.2-0.2-0.4
Fecal boli incidents, locomotor time 10.20.20.50.7-0.4-0.20.4
Change in fecal boli incidents, locomotor task2.42.33.9-2.01.61.4-0.9
Time >=10cm from walls, locomotor time 12.22.23.1-1.81.61.8-0.2
Bouts of movement, locomotor time 12.12.34.11.4-0.9-1.5-2.0
Total resting periods, locomotor time 11.21.42.90.9-0.6-1.2-1.7
Rest time, locomotor task time 10.60.61.90.2-0.2-0.7-1.4
Distance moved, locomotor task time 10.00.00.10.20.20.30.2
Vertical activity count, locomotor time 10.70.81.4-0.60.60.91.2
Time >=10cm from walls, locomotor time 21.82.03.0-1.61.41.70.5
Bouts of movement, locomotor time 22.42.63.71.9-1.4-1.7-1.3
Total resting periods, locomotor time 22.52.63.41.8-1.5-1.8-1.4
Rest time, locomotor task time 20.60.61.00.8-0.9-1.0-0.4
Distance moved, locomotor task time 20.00.00.10.00.1-0.0-0.3
Vertical activity count, locomotor time 20.50.51.90.2-0.4-0.11.4
Light reinforcement 11.11.92.91.4-1.7-1.7-0.1
Light reinforcement 21.92.53.91.6-2.0-1.70.9
Bone: marrow area1.73.75.8-2.41.82.11.1
Bone: maximum diameter0.30.60.8-0.90.80.9-0.1
Bone: maximum force0.91.62.5-1.60.91.21.2
Bone: maximum moment1.22.13.4-1.91.31.50.9
Mean time between licks in bursts0.60.93.4-0.0-0.40.01.8
Mean num. licks in bursts0.60.71.61.2-0.7-0.7-0.1
Cd content in liver2.02.23.81.3-1.7-1.9-0.6
Co content in liver1.31.52.51.6-1.1-1.4-0.7
Cu content in liver2.63.24.1-1.81.91.5-2.0
Fe content in liver2.32.83.6-1.91.51.81.4
K content in liver0.30.31.00.30.3-0.0-1.0
Mg content in liver0.20.20.4-0.30.60.4-0.4
Mn content in liver0.40.40.91.0-0.6-0.60.3
Na content in liver0.50.61.3-0.40.70.5-1.2
Rb content in liver0.20.20.50.7-0.3-0.4-0.3
Se content in liver0.10.10.4-0.10.1-0.1-0.6
Sr content in liver0.50.40.60.5-0.7-0.60.8
Zn content in liver0.80.92.0-0.80.90.5-1.4
Bone: minimum diameter2.24.18.0-2.01.11.82.8
Time in familiar zone, hab. session 10.80.71.81.0-0.1-0.4-1.3
Time in novel zone, hab. session 10.20.20.6-0.70.10.20.3
Total zone transitions, hab. session 10.60.82.30.3-0.8-0.51.5
Total locomotion distance, hab. session 10.50.72.4-0.40.10.51.5
Locomotion velocity, hab. session 10.60.93.3-0.3-0.20.21.8
Time in familiar zone, hab. session 21.41.45.10.70.3-0.3-2.3
Time in novel zone, hab. session 21.01.02.4-1.00.20.71.6
Total zone transitions, hab. session 20.70.91.71.3-1.0-1.10.2
Total locomotion distance, hab. session 20.20.20.50.4-0.2-0.10.7
Locomotion velocity, hab. session 20.10.20.30.5-0.2-0.10.6
Novel to familiar place preference ratio0.20.20.4-0.60.30.50.5
Novelty place preference0.20.20.2-0.50.30.50.2
Time in novel zone, NPP test0.00.00.1-0.30.10.20.1
Total zone transitions, NPP test1.01.42.21.5-1.3-1.20.7
Total locomotion distance, NPP test0.30.41.40.1-0.30.01.2
Locomotion velocity, NPP test0.20.31.2-0.10.10.41.1
Intraocular pressure1.11.53.90.1-1.2-0.82.0
Delta distance traveled before/after self-admin0.60.71.1-1.00.90.8-0.5
Delta ambulatory time before/after self-admin1.21.32.0-1.41.11.0-0.9
Parametrial fat weight0.61.22.51.6-1.0-1.10.1
Pavlov. Cond. lever latency0.30.41.4-0.20.50.2-1.2
Pavlov. Cond. magazine entry latency0.20.31.1-0.2-0.20.11.0
Pavlov. Cond. change in total contacts1.31.43.70.2-1.1-0.71.9
Pavlov. Cond. index score0.50.61.20.5-0.8-0.51.1
Pavlov. Cond. latency score0.50.61.00.6-0.8-0.61.0
Pavlov. Cond. lever contacts0.50.62.4-0.1-0.30.11.5
Pavlov. Cond. magazine entry number0.40.50.9-0.30.80.6-0.9
Pavlov. Cond. intertrial magazine entries0.40.50.8-0.60.90.9-0.2
Pavlov. Cond. lever-magazine prob. diff.0.40.51.10.4-0.8-0.51.1
Pavlov. Cond. response bias0.40.51.9-0.1-0.4-0.11.4
Pavlov. Cond. lever latency1.21.72.21.5-1.4-1.40.7
Pavlov. Cond. magazine entry latency0.00.10.1-0.20.20.40.1
Pavlov. Cond. change in total contacts1.62.22.8-1.71.21.61.3
Pavlov. Cond. index score1.01.31.9-1.41.11.30.6
Pavlov. Cond. latency score0.91.11.7-1.31.11.20.3
Pavlov. Cond. lever contacts0.91.31.7-1.31.31.3-0.3
Pavlov. Cond. magazine entry number0.20.20.30.4-0.3-0.5-0.5
Pavlov. Cond. intertrial magazine entries0.20.20.80.2-0.2-0.20.9
Pavlov. Cond. lever-magazine prob. diff.1.01.21.8-1.41.11.30.5
Pavlov. Cond. response bias1.21.62.4-1.61.31.50.4
Time in closed arm before self-admin0.20.20.7-0.10.40.1-0.8
Time in closed arm after self-admin0.50.51.60.00.0-0.5-1.3
Time in open arm before self-admin0.70.81.3-0.60.71.21.0
Time in open arm after self-admin0.40.51.00.4-0.8-0.31.0
Bone: periosteal estimation2.14.36.6-2.61.72.21.7
Bone: periosteal perimeter0.91.62.4-1.61.31.50.3
Bone: post-yield work2.83.84.7-2.12.22.0-1.4
Progressive ratio test 1 active lever presses1.61.75.70.20.80.5-2.4
Progressive ratio test 1 breakpoint1.51.64.9-0.11.00.7-2.2
Progressive ratio test 1 inactive lever presses0.80.91.91.4-0.4-0.7-1.0
Progressive ratio test 2 active lever presses2.12.33.2-1.31.81.7-1.2
Progressive ratio test 2 breakpoint2.22.53.5-1.51.91.8-0.9
Progressive ratio test 2 inactive lever presses1.01.21.8-0.51.31.3-1.0
Incentive Sensitization - Responses3.03.14.8-1.91.92.20.4
Incentive Sensitization - Breakpoint2.82.84.2-1.91.82.10.2
Sum of active levers in priming session hrs 5-60.50.50.7-0.70.70.80.5
Progressive ratio0.70.83.10.20.30.2-1.8
Food seeking constrained by brief footshock1.62.05.70.7-1.2-0.72.4
Seeking ratio, punishment vs. effort2.12.58.30.3-1.0-0.82.9
Retroperitoneal fat weight0.00.10.20.20.0-0.2-0.5
Reaction time number correct0.81.21.7-1.21.11.30.6
Reaction time mean minus median3.34.38.12.8-2.3-1.90.5
Reaction time mean minus median AUC3.34.37.72.8-2.3-1.81.0
Reaction time num false alarms2.53.45.1-2.11.92.30.6
Reaction time num false alarms AUC2.23.04.5-2.01.82.10.4
Reaction time trials correct on left0.81.21.7-1.21.11.30.6
Reaction time trials on left0.81.11.6-1.11.11.30.7
Reaction time mean1.62.33.31.8-1.6-1.21.3
Reaction time mean AUC1.72.33.31.8-1.6-1.11.5
Median of all reaction times1.11.52.51.1-1.2-0.81.6
Reaction time omissions2.83.86.21.8-2.5-2.01.3
Reaction time false alarm rate0.20.30.5-0.60.60.7-0.2
Reaction time premature initiation rate1.01.33.2-0.90.90.6-1.8
Reaction time premature initiations1.11.61.8-1.31.41.1-1.3
Std. dev. reaction times2.13.06.12.5-1.9-1.50.5
Reaction time trials completed0.81.11.6-1.11.11.30.7
Reaction time trials AUC0.81.11.5-1.11.01.20.8
Run reversals in cocaine runway, females0.40.40.80.1-0.9-0.80.4
Run reversals in cocaine runway, males1.61.53.50.7-1.3-0.71.9
Latency to leave start box in cocaine runway0.60.70.9-0.80.90.9-0.5
Latency to leave start box in cocaine runway, F2.42.73.5-1.61.91.8-1.2
Latency to leave start box in cocaine runway, M1.51.41.81.1-1.3-1.11.2
Std. dev. time between licks in bursts0.40.40.9-1.00.40.50.6
Total sessions with >9 infusions0.60.72.3-0.30.50.4-1.5
Short access day 1 total inactive lever presses0.30.41.20.50.1-0.1-1.1
Short access day 10 total inactive lever presses1.71.93.31.8-1.1-1.6-0.8
Short access day 1 total infusions1.41.53.1-1.31.00.7-1.8
Short access day 10 total infusions1.41.63.0-0.61.31.2-1.7
Short access total infusions1.82.03.0-1.01.51.3-1.7
Short access day 1 locomotion0.30.31.20.3-0.0-0.1-1.1
Short access day 10 total locomotion1.21.31.81.4-1.4-1.30.0
Short access total locomotion0.30.30.80.30.40.4-0.9
One hour access (0.3 mA shock)4.14.87.0-2.22.72.5-1.2
Compulsive drug intake1.61.62.11.4-1.3-1.40.9
One hour access (shock baseline)6.17.19.5-2.53.13.0-2.0
Social response proportion0.70.81.91.4-0.8-0.7-0.2
Social responses1.21.52.81.7-1.3-1.3-0.1
Social time0.10.10.30.30.30.50.2
Soleus weight0.61.72.31.5-1.4-1.01.3
Bone: stiffness0.30.51.2-1.10.40.60.6
Tibialis anterior weight4.515.424.22.9-4.3-3.34.9
Time to tail flick, vehicle, before self-admin0.70.71.3-1.01.10.7-0.2
Time to tail flick, vehicle, after self-admin1.81.92.9-1.61.71.2-0.8
Time to tail flick, test, before self-admin0.80.81.01.0-0.7-0.9-1.0
Time to tail flick, test, after self-admin0.60.61.4-0.60.60.5-1.2
Delta time to tail flick, vehicle, before/after SA0.90.91.3-0.81.11.2-0.5
Delta time to tail flick, test, before/after SA0.20.10.3-0.5-0.1-0.1-0.6
Tibia length0.82.13.1-1.21.71.1-1.8
Ambulatory time before self-admin0.30.30.90.9-0.2-0.3-0.2
Ambulatory time after self-admin0.20.30.4-0.00.50.6-0.7
Bone: tissue strength1.51.52.4-0.81.31.1-1.6
Total heroin consumption0.20.20.70.20.00.30.8
Bone: trabecular number1.01.52.5-1.61.31.3-0.3
Bone: trabecular spacing1.72.23.31.8-1.6-1.60.2
Bone: trabecular thickness3.44.17.3-2.72.12.20.1
Bone: trabecular tissue density2.02.94.31.7-2.1-1.90.5
Water consumed over 24 hours0.00.00.10.0-0.3-0.10.3
Number of responses in last shaping day0.20.20.50.4-0.1-0.1-0.7