LOC103691511

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose isoform ratio XR_010064176.1 0.03 0.02 5.1e-03 0.02 0.01 0.01 0.02 3.1e-03 1.6e-02 1.8e-02 6.4e-03
2 Brain gene expression LOC103691511 0.09 0.06 3.5e-04 0.02 0.01 0.01 0.01 3.2e-03 3.3e-02 1.7e-02 1.4e-02
3 Adipose mRNA stability LOC103691511 0.09 0.06 5.2e-08 0.05 0.04 0.05 0.05 2.7e-06 1.8e-05 6.0e-06 6.2e-06
4 Adipose gene expression LOC103691511 0.09 0.06 9.8e-08 0.04 0.05 0.04 0.04 9.0e-06 1.4e-06 1.7e-05 1.4e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.42.44.61.32.21.80.2
Area under the delay curve1.01.12.0-0.9-1.4-1.2-0.1
BMI with tail0.51.72.6-1.6-1.3-1.40.9
BMI without tail0.72.33.4-1.8-1.4-1.41.3
Body weight0.73.05.5-2.3-0.9-1.02.2
Weight adjusted by age0.20.30.7-0.20.30.60.9
Bone surface3.66.512.71.83.63.00.9
Bone volume3.46.111.31.73.43.01.0
Breakpoint value in progressive ratio session0.50.61.0-1.0-0.7-0.31.0
Number of licking bursts0.20.30.50.60.50.7-0.1
Context. condit. distance diff. score0.30.30.6-0.3-0.7-0.7-0.5
Locomotion velocity, session 11.61.83.2-1.8-1.1-1.21.1
Locomotion distance, session 10.81.12.3-1.3-0.1-0.41.5
Locomotion velocity, session 21.41.73.0-1.7-1.0-1.21.1
Locomotion distance, session 21.21.64.2-1.5-0.1-0.22.1
Locomotion velocity, session 30.00.00.1-0.1-0.3-0.1-0.1
Locomotion distance, session 30.30.40.80.50.50.90.3
Stereotopy head waving bouts, day 30.50.61.4-0.20.80.61.2
Stereotopy head waving duration, day 30.30.30.6-0.8-0.2-0.40.7
Locomotion velocity, session 74.85.29.41.82.73.10.9
Locomotion distance, session 73.34.26.02.32.32.5-0.6
Stereotopy head waving bouts, day 70.50.60.9-0.9-0.6-0.51.0
Stereotopy head waving duration, day 70.81.01.3-1.1-1.1-1.00.6
Locomotion velocity, session 83.03.65.3-2.3-2.1-2.01.0
Locomotion distance, session 81.01.52.5-1.6-1.1-1.11.0
Degree of sensitization distance0.30.30.70.50.80.4-0.3
Degree of sensitization stereotypy1.31.42.1-1.4-1.3-1.10.9
Conditioned locomotion0.10.10.2-0.5-0.1-0.30.3
Cocaine response after cond. corrected0.50.61.01.00.60.5-0.8
Cocaine response after cond. not corrected1.01.22.21.51.00.9-1.0
Cocaine response before conditioning0.40.50.80.70.80.90.2
Saline control response0.91.22.00.61.21.41.0
Bone: connectivity density1.42.24.21.42.11.7-0.2
Bone: cortical apparent density1.11.52.2-1.4-1.5-1.30.2
Bone: cortical area0.60.91.8-0.21.10.91.3
Bone: cortical porosity0.30.30.50.30.70.70.5
Bone: cortical porosity0.20.20.5-0.00.50.50.7
Bone: cortical thickness0.60.92.7-0.90.40.31.7
Bone: cortical thickness2.12.44.7-2.2-1.0-1.31.5
Bone: cortical tissue density1.11.52.3-1.4-1.5-1.40.1
Condit. Reinf. active minus inactive responses3.74.110.3-2.4-0.6-0.53.2
Condit. Reinf. active-inactive response ratio4.64.911.7-2.6-0.6-0.73.4
Condit. Reinf. active responses3.13.910.8-2.2-0.3-0.13.3
Condit. Reinf. inactive responses0.10.10.2-0.2-0.00.30.5
Incentive salience index mean3.94.811.9-2.6-0.6-0.53.4
Condit. Reinf. lever presses1.82.64.9-2.1-0.8-0.62.2
Condit. Reinf. active minus inactive responses3.54.57.81.62.52.81.2
Condit. Reinf. active-inactive response ratio2.12.54.11.01.92.01.2
Condit. Reinf. active responses4.66.410.62.03.13.31.2
Condit. Reinf. inactive responses0.40.50.80.50.80.90.5
Condit. Reinf. lever presses1.92.64.11.12.02.00.9
Condit. Reinf. lever reinforcers received4.86.710.82.13.23.31.1
Conditioned reinforcement - actives2.95.08.32.22.92.7-0.1
Conditioned reinforcement - inactives0.40.61.20.60.91.10.3
Conditioned locomotion1.92.44.91.32.21.70.1
Patch foraging indifference point 0 sec0.51.01.81.20.20.7-1.3
Patch foraging indifference point AUC0.10.20.4-0.5-0.3-0.6-0.1
Delay disc. indifference point, 0s delay0.10.10.30.2-0.0-0.2-0.6
Delay disc. indifference point, 16s delay0.90.92.0-0.8-1.4-1.1-0.1
Delay disc. indifference point, 2s delay0.91.02.6-1.20.2-0.11.6
Delay disc. indifference point, 24s delay0.20.20.5-0.1-0.7-0.3-0.2
Delay disc. indifference point, 4s delay1.81.93.0-1.4-1.7-1.60.1
Delay disc. indifference point, 8s delay0.30.40.70.1-0.8-0.5-0.8
Indifference point function ln k0.20.30.9-0.2-0.9-0.5-0.2
Indifference point function log k0.20.30.9-0.2-0.9-0.5-0.2
Patch foraging total patch changes 0 sec0.40.71.80.9-0.20.3-1.3
Patch foraging total patch changes 12 sec0.30.41.10.60.40.0-1.1
Patch foraging total patch changes 18 sec0.30.40.7-0.6-0.9-0.7-0.0
Patch foraging total patch changes 24 sec0.20.40.8-0.1-0.4-0.7-0.9
Patch foraging total patch changes 6 sec0.10.20.50.0-0.3-0.4-0.7
Patch foraging time to switch 0 sec1.02.05.5-1.5-0.4-0.12.3
Patch foraging water rate 0 sec0.30.61.90.4-0.4-0.6-1.4
Patch foraging water rate 12 sec0.71.52.81.70.70.9-1.3
Patch foraging water rate 18 sec0.20.40.60.80.70.4-0.4
Patch foraging water rate 24 sec0.70.91.70.3-1.0-0.9-1.3
Patch foraging water rate 6 sec1.31.93.31.81.11.3-1.2
Seeking ratio, delayed vs. immediate footshock5.76.910.63.32.72.4-2.0
Distance traveled before self-admin0.60.81.1-1.1-1.0-0.90.3
Distance traveled after self-admin0.10.10.20.4-0.00.1-0.4
Extensor digitorum longus weight7.931.251.6-7.2-4.9-5.44.4
Bone: elastic displacement0.60.71.7-0.20.70.71.3
Bone: elastic work0.91.11.80.11.11.21.4
Bone: endosteal estimation1.32.85.20.92.31.91.2
Bone: endosteal perimeter0.61.22.41.01.51.20.1
Epididymis fat weight0.51.73.0-1.4-1.3-1.70.1
Delta time in closed arm before/after self-admin0.30.30.7-0.0-0.4-0.6-0.8
Delta time in open arm before/after self-admin0.30.20.50.50.50.7-0.0
Diff in mean of infusions in LGA sessions1.11.33.5-1.3-0.2-0.21.9
Delay discount exponential model param0.80.91.60.81.31.10.1
Extinction: sum of active levers before priming0.20.20.5-0.30.30.50.7
Active lever presses in extinction session 60.20.20.60.4-0.4-0.1-0.8
Bone: final force0.61.02.1-0.21.00.81.5
Bone: final moment0.71.11.60.11.31.11.3
Food consumed during 24 hour testing period1.01.42.3-1.5-1.0-0.81.4
Glucose0.50.81.4-1.2-0.6-0.71.0
Heart weight0.50.81.5-0.7-1.2-1.0-0.3
Delay discount hyperbolic model param1.01.11.61.11.31.1-0.3
Intermittent access intake day 1-15 change1.73.44.92.22.01.7-1.3
Intermittent access intake escalation1.83.65.62.41.91.6-1.7
Intermittent access intake escalation 25.15.88.22.92.62.4-1.6
Intermitt. access day 1 inactive lever presses1.03.77.9-1.4-2.8-2.2-0.4
Intermitt. access day 15 inactive lever presses0.91.93.5-0.1-1.9-1.5-1.4
Intermitt. access escalation Index1.21.72.8-0.8-1.7-1.7-0.8
Intermittent access day 1 total infusions2.84.46.92.12.62.5-0.1
Intermittent access day 15 total infusions5.88.712.33.53.33.0-1.6
Intermittent access terminal intake (last 3 days)8.010.514.73.83.73.3-1.6
Intermittent access total infusions5.56.59.02.93.02.7-1.0
Intermittent access day 1 locomotion1.31.62.31.41.51.4-0.2
Intermittent access day 15 total locomotion1.32.34.81.42.21.60.1
Intermittent access total locomotion2.93.55.62.02.42.0-0.6
Intermittent access standard deviation2.04.26.92.61.81.5-2.1
Left kidney weight0.10.41.30.5-0.5-0.2-1.1
Right kidney weight0.00.20.3-0.4-0.5-0.5-0.2
Cocaine induced anxiety0.40.51.3-0.6-1.1-0.7-0.1
Post-drug Anxiety1.92.03.3-1.8-1.4-1.40.9
Baseline Anxiety0.40.41.1-0.80.2-0.21.0
Tail length0.31.11.8-1.3-0.8-0.71.3
Length with tail0.31.33.0-1.5-0.1-0.21.7
Length without tail0.20.61.0-0.21.00.90.8
Times rat made contact with spout0.10.10.20.40.10.3-0.2
Lifetime Intake4.15.07.32.72.42.1-1.4
Liver weight, left0.30.51.3-0.8-0.2-0.11.1
Liver weight, right0.40.70.9-0.4-1.0-0.9-0.8
Locomotor activity0.00.00.1-0.20.30.00.1
Locomotor testing distance0.00.10.2-0.30.10.20.4
Locomotor testing rearing0.51.01.71.30.71.1-0.7
Locomotion in novel chamber0.50.71.7-1.00.1-0.11.3
Locomotion in novel chamber post-restriction0.10.10.2-0.0-0.3-0.4-0.4
Fecal boli incidents, locomotor time 10.10.10.1-0.4-0.2-0.10.3
Change in fecal boli incidents, locomotor task1.91.82.51.61.51.3-0.9
Time >=10cm from walls, locomotor time 11.51.62.41.21.61.5-0.1
Bouts of movement, locomotor time 12.22.54.90.2-1.6-1.6-2.2
Total resting periods, locomotor time 11.41.63.50.2-1.2-1.2-1.9
Rest time, locomotor task time 10.30.41.00.1-0.4-0.6-1.0
Distance moved, locomotor task time 10.00.00.1-0.2-0.1-0.10.3
Vertical activity count, locomotor time 10.30.71.7-0.40.70.61.3
Time >=10cm from walls, locomotor time 20.91.42.50.91.41.60.6
Bouts of movement, locomotor time 21.52.44.1-0.5-2.0-1.8-1.5
Total resting periods, locomotor time 21.52.64.3-0.5-2.1-1.9-1.6
Rest time, locomotor task time 20.50.71.3-0.4-1.1-0.9-0.6
Distance moved, locomotor task time 20.00.00.10.1-0.1-0.2-0.2
Vertical activity count, locomotor time 20.60.92.0-1.1-0.4-0.31.4
Light reinforcement 10.71.83.4-1.1-1.5-1.8-0.3
Light reinforcement 21.62.54.1-1.9-1.4-2.00.7
Bone: marrow area1.22.64.80.72.21.81.3
Bone: maximum diameter0.20.30.60.50.80.60.1
Bone: maximum force0.71.32.5-0.11.31.01.6
Bone: maximum moment0.91.52.40.31.51.31.3
Mean time between licks in bursts0.41.03.1-1.00.00.11.8
Mean num. licks in bursts0.10.10.2-0.3-0.4-0.5-0.1
Cd content in liver0.60.71.3-0.5-0.9-1.2-0.6
Co content in liver1.31.52.1-0.3-1.4-1.4-1.3
Cu content in liver2.12.54.32.11.11.2-1.8
Fe content in liver0.60.81.50.80.91.20.3
K content in liver0.40.41.00.7-0.30.1-1.0
Mg content in liver0.20.20.40.6-0.00.3-0.6
Mn content in liver0.20.20.5-0.3-0.7-0.4-0.1
Na content in liver0.90.91.61.30.60.7-1.1
Rb content in liver0.20.30.80.1-0.9-0.3-0.5
Se content in liver0.20.30.40.1-0.6-0.5-0.7
Sr content in liver0.30.20.6-0.60.30.10.8
Zn content in liver2.02.23.41.81.20.9-1.8
Bone: minimum diameter2.13.89.2-0.51.71.73.0
Time in familiar zone, hab. session 10.70.71.90.5-0.6-0.5-1.4
Time in novel zone, hab. session 10.10.10.20.20.40.40.4
Total zone transitions, hab. session 10.91.22.2-1.5-0.1-0.61.5
Total locomotion distance, hab. session 10.71.02.7-0.80.70.41.6
Locomotion velocity, hab. session 10.91.33.5-1.10.50.11.9
Time in familiar zone, hab. session 21.71.85.11.1-0.8-0.4-2.3
Time in novel zone, hab. session 21.11.12.6-0.31.10.71.6
Total zone transitions, hab. session 20.50.71.0-1.0-0.9-1.00.1
Total locomotion distance, hab. session 20.10.20.5-0.5-0.0-0.00.7
Locomotion velocity, hab. session 20.10.10.3-0.4-0.0-0.00.6
Novel to familiar place preference ratio0.10.20.30.10.50.30.5
Novelty place preference0.10.10.20.30.40.30.2
Time in novel zone, NPP test0.00.00.10.30.20.00.0
Total zone transitions, NPP test1.11.52.3-1.5-1.3-1.30.6
Total locomotion distance, NPP test0.40.61.5-0.90.1-0.11.2
Locomotion velocity, NPP test0.40.51.4-0.60.40.31.2
Intraocular pressure1.52.13.7-1.9-0.8-0.81.9
Delta distance traveled before/after self-admin3.33.55.22.32.02.0-0.7
Delta ambulatory time before/after self-admin2.93.65.62.42.02.1-0.8
Parametrial fat weight0.10.20.5-0.50.10.10.7
Pavlov. Cond. lever latency0.40.51.20.90.20.1-1.1
Pavlov. Cond. magazine entry latency0.30.41.0-0.7-0.1-0.01.0
Pavlov. Cond. change in total contacts1.71.83.3-1.8-0.6-0.71.8
Pavlov. Cond. index score0.60.71.2-1.1-0.6-0.51.0
Pavlov. Cond. latency score0.50.71.1-1.1-0.7-0.60.9
Pavlov. Cond. lever contacts0.70.82.3-1.00.10.11.5
Pavlov. Cond. magazine entry number0.60.81.31.20.70.7-0.9
Pavlov. Cond. intertrial magazine entries0.40.50.80.70.90.9-0.1
Pavlov. Cond. lever-magazine prob. diff.0.50.61.0-1.0-0.5-0.41.0
Pavlov. Cond. response bias0.70.82.1-1.1-0.1-0.11.4
Pavlov. Cond. lever latency1.11.52.4-1.3-1.6-1.30.5
Pavlov. Cond. magazine entry latency0.00.00.00.10.20.10.1
Pavlov. Cond. change in total contacts1.11.72.30.21.51.51.5
Pavlov. Cond. index score0.60.81.40.41.21.10.8
Pavlov. Cond. latency score0.60.81.50.61.21.10.4
Pavlov. Cond. lever contacts0.60.91.50.91.21.1-0.1
Pavlov. Cond. magazine entry number0.10.10.30.1-0.3-0.3-0.5
Pavlov. Cond. intertrial magazine entries0.20.30.9-0.7-0.00.01.0
Pavlov. Cond. lever-magazine prob. diff.0.60.81.40.41.21.10.7
Pavlov. Cond. response bias0.60.91.50.61.21.20.6
Time in closed arm before self-admin0.60.71.51.20.10.5-1.1
Time in closed arm after self-admin1.01.02.40.5-0.8-0.9-1.6
Time in open arm before self-admin0.40.50.8-0.10.90.50.9
Time in open arm after self-admin0.30.30.8-0.7-0.1-0.10.9
Bone: periosteal estimation1.53.14.70.22.21.82.1
Bone: periosteal perimeter0.61.02.30.61.51.10.5
Bone: post-yield work3.04.46.12.52.42.1-1.2
Progressive ratio test 1 active lever presses1.72.13.51.91.41.2-1.3
Progressive ratio test 1 breakpoint1.92.33.61.91.51.3-1.2
Progressive ratio test 1 inactive lever presses0.00.00.10.3-0.30.2-0.1
Progressive ratio test 2 active lever presses4.65.48.42.42.92.6-0.6
Progressive ratio test 2 breakpoint4.55.18.02.42.82.6-0.5
Progressive ratio test 2 inactive lever presses1.01.62.21.51.41.3-0.6
Incentive Sensitization - Responses3.04.27.71.52.82.50.7
Incentive Sensitization - Breakpoint3.14.07.31.52.72.50.6
Sum of active levers in priming session hrs 5-61.11.01.80.51.31.40.6
Progressive ratio0.81.23.61.10.2-0.4-1.9
Food seeking constrained by brief footshock2.42.95.5-2.3-0.6-0.82.3
Seeking ratio, punishment vs. effort2.23.27.3-2.2-0.7-0.42.7
Retroperitoneal fat weight0.20.71.3-1.1-0.8-0.80.6
Reaction time number correct0.61.21.90.71.41.30.8
Reaction time mean minus median1.22.94.6-1.8-2.1-1.90.3
Reaction time mean minus median AUC1.23.14.3-2.0-2.1-1.90.8
Reaction time num false alarms2.13.04.71.42.12.20.7
Reaction time num false alarms AUC1.93.04.91.52.12.20.5
Reaction time trials correct on left0.61.21.90.71.41.30.8
Reaction time trials on left0.61.11.80.61.41.20.8
Reaction time mean1.11.82.8-1.7-1.2-1.21.2
Reaction time mean AUC1.11.72.7-1.6-1.1-1.11.3
Median of all reaction times0.91.32.2-1.4-0.6-0.71.5
Reaction time omissions2.63.86.1-2.5-1.7-2.21.3
Reaction time false alarm rate0.30.40.60.80.70.8-0.2
Reaction time premature initiation rate1.01.33.11.40.60.4-1.7
Reaction time premature initiations0.81.52.41.51.10.9-1.2
Std. dev. reaction times0.91.72.4-1.4-1.6-1.50.2
Reaction time trials completed0.61.11.80.61.41.20.8
Reaction time trials AUC0.61.11.70.51.31.20.9
Run reversals in cocaine runway, females0.30.30.8-0.9-0.1-0.50.3
Run reversals in cocaine runway, males1.61.63.0-1.7-0.7-0.71.6
Latency to leave start box in cocaine runway0.70.81.11.10.91.1-0.6
Latency to leave start box in cocaine runway, F2.42.84.12.01.61.8-1.1
Latency to leave start box in cocaine runway, M1.61.52.5-1.6-1.1-1.20.9
Std. dev. time between licks in bursts0.20.30.5-0.20.60.40.7
Total sessions with >9 infusions1.61.93.61.90.80.9-1.6
Short access day 1 total inactive lever presses1.01.33.71.2-0.4-0.1-1.9
Short access day 10 total inactive lever presses0.82.04.1-0.8-2.0-1.6-0.7
Short access day 1 total infusions1.41.83.41.60.90.6-1.8
Short access day 10 total infusions2.32.94.92.21.61.7-1.2
Short access total infusions1.72.23.82.01.31.2-1.3
Short access day 1 locomotion0.30.41.00.8-0.10.1-1.0
Short access day 10 total locomotion0.10.20.3-0.4-0.4-0.5-0.1
Short access total locomotion0.60.71.31.20.70.7-0.7
One hour access (0.3 mA shock)5.46.29.92.63.12.8-0.5
Compulsive drug intake1.41.73.4-1.2-1.9-1.30.2
One hour access (shock baseline)7.611.618.13.64.33.9-0.8
Social response proportion0.30.30.6-0.4-0.8-0.7-0.2
Social responses0.70.91.5-0.8-1.1-1.2-0.3
Social time0.10.20.40.50.40.60.2
Soleus weight0.61.82.7-1.6-1.2-1.11.3
Bone: stiffness0.20.40.8-0.20.60.50.9
Tibialis anterior weight5.819.733.6-5.8-3.3-3.74.5
Time to tail flick, vehicle, before self-admin0.30.30.70.20.90.70.2
Time to tail flick, vehicle, after self-admin1.41.92.91.71.61.1-1.0
Time to tail flick, test, before self-admin0.50.50.8-0.1-0.9-0.7-0.9
Time to tail flick, test, after self-admin1.31.32.71.60.60.8-1.2
Delta time to tail flick, vehicle, before/after SA2.01.93.51.91.21.2-1.1
Delta time to tail flick, test, before/after SA0.00.00.10.3-0.10.0-0.3
Tibia length0.71.93.41.81.01.0-1.6
Ambulatory time before self-admin0.91.32.2-1.5-1.2-1.20.7
Ambulatory time after self-admin0.50.60.90.80.81.00.1
Bone: tissue strength2.52.54.82.21.11.4-1.5
Total heroin consumption0.60.71.40.30.81.20.8
Bone: trabecular number0.61.02.10.81.41.1-0.1
Bone: trabecular spacing1.41.93.7-1.1-1.9-1.6-0.1
Bone: trabecular thickness3.03.77.01.52.72.30.5
Bone: trabecular tissue density1.82.73.8-1.8-1.9-1.90.4
Water consumed over 24 hours0.10.10.1-0.3-0.3-0.10.3
Number of responses in last shaping day0.60.71.11.00.60.8-0.8