LOC102556219

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC102556219 0.19 0.15 2.5e-15 0.1 0.09 0.09 0.1 1.1e-10 2.1e-10 8.7e-10 8.2e-11
2 Liver alternative polyA XR_354161.4 0.11 0.08 7.1e-11 0.07 0.07 0.07 0.07 1.2e-08 5.0e-08 5.4e-08 3.1e-08
3 Liver alternative polyA XR_005504909.1 0.1 0.08 3.0e-10 0.07 0.06 0.06 0.07 3.1e-08 1.3e-07 1.6e-07 7.1e-08
4 Brain gene expression LOC102556219 0.04 0.04 7.2e-04 0.02 0.03 0.02 0.02 1.1e-02 7.7e-04 4.1e-03 4.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.2-0.30.4-0.4-0.4
Area under the delay curve0.10.10.2-0.20.2-0.1-0.4
BMI with tail0.00.20.20.4-0.30.50.3
BMI without tail0.20.40.40.5-0.60.60.6
Body weight0.00.20.3-0.30.5-0.3-0.5
Weight adjusted by age2.32.62.71.6-1.61.61.6
Bone surface2.34.04.22.0-2.02.02.0
Bone volume0.61.11.11.0-1.11.01.0
Breakpoint value in progressive ratio session0.60.61.3-1.10.6-0.7-0.5
Number of licking bursts0.00.00.00.2-0.10.20.2
Context. condit. distance diff. score2.73.23.4-1.81.7-1.8-1.9
Locomotion velocity, session 10.10.10.20.4-0.40.40.3
Locomotion distance, session 10.60.80.9-1.00.8-0.9-0.9
Locomotion velocity, session 20.10.10.10.2-0.20.20.4
Locomotion distance, session 20.20.20.30.3-0.50.50.5
Locomotion velocity, session 30.00.10.2-0.40.1-0.1-0.1
Locomotion distance, session 30.00.00.1-0.0-0.20.20.1
Stereotopy head waving bouts, day 30.50.61.0-1.00.7-0.7-0.7
Stereotopy head waving duration, day 31.11.31.6-1.31.1-1.1-1.1
Locomotion velocity, session 70.80.91.5-1.20.9-0.9-0.8
Locomotion distance, session 70.40.50.6-0.80.7-0.7-0.7
Stereotopy head waving bouts, day 70.70.81.00.8-0.90.91.0
Stereotopy head waving duration, day 71.01.21.31.0-1.11.11.1
Locomotion velocity, session 80.40.50.5-0.70.6-0.7-0.7
Locomotion distance, session 80.81.11.2-1.11.0-1.0-1.1
Degree of sensitization distance0.00.00.00.00.1-0.10.1
Degree of sensitization stereotypy1.01.11.21.0-1.01.01.1
Conditioned locomotion0.10.10.3-0.50.3-0.3-0.2
Cocaine response after cond. corrected0.30.40.50.5-0.70.60.7
Cocaine response after cond. not corrected0.30.30.40.6-0.60.50.6
Cocaine response before conditioning0.00.00.00.2-0.0-0.0-0.0
Saline control response0.10.10.10.00.2-0.4-0.4
Bone: connectivity density2.23.43.92.0-1.81.81.8
Bone: cortical apparent density8.010.610.7-3.33.3-3.2-3.3
Bone: cortical area0.20.30.50.7-0.50.50.4
Bone: cortical porosity0.60.70.91.0-0.80.80.7
Bone: cortical porosity0.80.81.21.1-0.80.90.8
Bone: cortical thickness0.20.40.5-0.40.7-0.6-0.7
Bone: cortical thickness0.10.10.2-0.30.4-0.4-0.2
Bone: cortical tissue density7.910.410.5-3.23.2-3.2-3.2
Condit. Reinf. active minus inactive responses0.20.20.40.6-0.40.50.3
Condit. Reinf. active-inactive response ratio0.00.00.00.00.10.0-0.1
Condit. Reinf. active responses0.81.01.41.2-0.91.00.8
Condit. Reinf. inactive responses0.40.40.70.8-0.60.60.6
Incentive salience index mean0.30.30.60.8-0.50.50.4
Condit. Reinf. lever presses0.00.10.10.10.2-0.3-0.3
Condit. Reinf. active minus inactive responses1.01.21.4-1.01.1-1.1-1.2
Condit. Reinf. active-inactive response ratio0.40.40.5-0.50.7-0.7-0.7
Condit. Reinf. active responses0.50.60.9-0.70.8-0.8-1.0
Condit. Reinf. inactive responses0.91.11.5-1.00.9-1.0-1.2
Condit. Reinf. lever presses3.54.85.32.2-2.32.12.1
Condit. Reinf. lever reinforcers received0.10.10.3-0.20.3-0.4-0.5
Conditioned reinforcement - actives0.20.20.3-0.50.5-0.5-0.4
Conditioned reinforcement - inactives0.20.30.4-0.40.5-0.5-0.7
Conditioned locomotion0.20.20.3-0.30.5-0.5-0.4
Patch foraging indifference point 0 sec6.710.811.83.4-3.23.33.2
Patch foraging indifference point AUC1.11.31.51.2-1.11.21.0
Delay disc. indifference point, 0s delay2.62.83.0-1.61.6-1.7-1.7
Delay disc. indifference point, 16s delay1.51.51.81.1-1.31.41.1
Delay disc. indifference point, 2s delay0.10.10.2-0.50.2-0.1-0.4
Delay disc. indifference point, 24s delay0.00.00.0-0.10.1-0.0-0.2
Delay disc. indifference point, 4s delay1.71.82.3-1.31.3-1.3-1.5
Delay disc. indifference point, 8s delay1.01.01.4-0.81.0-1.0-1.2
Indifference point function ln k0.50.71.0-1.00.9-0.8-0.6
Indifference point function log k0.50.71.0-1.00.9-0.8-0.6
Patch foraging total patch changes 0 sec6.19.811.03.3-3.03.13.0
Patch foraging total patch changes 12 sec1.51.92.21.4-1.41.51.2
Patch foraging total patch changes 18 sec2.83.65.12.2-1.81.91.6
Patch foraging total patch changes 24 sec1.41.72.11.4-1.21.31.3
Patch foraging total patch changes 6 sec2.84.24.82.2-1.92.11.9
Patch foraging time to switch 0 sec1.42.22.5-1.61.4-1.4-1.5
Patch foraging water rate 0 sec1.72.73.11.8-1.61.61.6
Patch foraging water rate 12 sec3.14.75.32.2-2.12.12.3
Patch foraging water rate 18 sec0.20.30.40.6-0.50.50.5
Patch foraging water rate 24 sec0.00.00.00.2-0.10.10.1
Patch foraging water rate 6 sec0.00.00.10.3-0.20.10.3
Seeking ratio, delayed vs. immediate footshock0.10.10.20.4-0.20.20.1
Distance traveled before self-admin0.10.10.10.1-0.20.30.3
Distance traveled after self-admin1.31.51.81.1-1.31.31.2
Extensor digitorum longus weight0.62.22.4-1.51.5-1.4-1.5
Bone: elastic displacement0.91.01.1-0.91.0-1.0-1.0
Bone: elastic work1.31.71.8-1.21.3-1.3-1.3
Bone: endosteal estimation0.71.41.61.2-1.31.21.2
Bone: endosteal perimeter1.63.43.61.9-1.91.81.8
Epididymis fat weight2.25.15.4-2.32.3-2.2-2.3
Delta time in closed arm before/after self-admin0.10.10.20.3-0.40.40.3
Delta time in open arm before/after self-admin1.51.51.91.4-1.11.11.2
Diff in mean of infusions in LGA sessions0.40.50.6-0.80.7-0.8-0.5
Delay discount exponential model param0.10.10.20.2-0.20.10.4
Extinction: sum of active levers before priming0.40.41.0-1.00.5-0.5-0.4
Active lever presses in extinction session 60.00.00.0-0.20.1-0.2-0.1
Bone: final force0.40.70.8-0.90.8-0.8-0.8
Bone: final moment0.00.00.0-0.10.1-0.2-0.2
Food consumed during 24 hour testing period0.10.10.2-0.40.1-0.2-0.3
Glucose0.00.00.00.10.2-0.2-0.0
Heart weight3.75.25.6-2.42.2-2.3-2.2
Delay discount hyperbolic model param0.10.10.30.4-0.30.20.5
Intermittent access intake day 1-15 change1.21.21.6-1.31.0-1.0-0.9
Intermittent access intake escalation1.01.01.5-1.20.9-0.9-0.8
Intermittent access intake escalation 21.11.11.6-1.31.0-1.0-0.9
Intermitt. access day 1 inactive lever presses1.31.31.51.2-1.21.11.2
Intermitt. access day 15 inactive lever presses0.80.91.0-0.90.9-1.0-0.9
Intermitt. access escalation Index0.80.70.80.9-0.80.80.9
Intermittent access day 1 total infusions0.00.00.10.20.1-0.1-0.2
Intermittent access day 15 total infusions0.50.60.6-0.80.8-0.8-0.7
Intermittent access terminal intake (last 3 days)0.10.10.1-0.30.4-0.4-0.3
Intermittent access total infusions0.30.30.4-0.40.7-0.6-0.6
Intermittent access day 1 locomotion0.20.20.40.6-0.30.20.4
Intermittent access day 15 total locomotion0.00.00.10.4-0.0-0.00.2
Intermittent access total locomotion0.00.10.10.40.0-0.00.3
Intermittent access standard deviation1.61.71.8-1.31.3-1.3-1.3
Left kidney weight0.51.31.9-1.41.1-1.1-1.0
Right kidney weight0.41.11.7-1.31.0-0.9-0.8
Cocaine induced anxiety0.00.00.1-0.10.1-0.3-0.3
Post-drug Anxiety1.01.11.4-1.20.9-1.0-1.1
Baseline Anxiety0.80.81.3-1.10.8-0.8-0.8
Tail length0.41.31.6-1.31.1-1.1-1.1
Length with tail0.31.01.1-1.01.0-0.9-1.1
Length without tail0.00.00.00.00.1-0.0-0.2
Times rat made contact with spout0.10.10.20.4-0.30.10.1
Lifetime Intake0.00.10.1-0.10.3-0.2-0.2
Liver weight, left1.62.53.0-1.61.5-1.5-1.7
Liver weight, right6.410.511.0-3.33.2-3.2-3.3
Locomotor activity0.00.00.10.3-0.10.10.0
Locomotor testing distance1.72.83.01.7-1.61.71.6
Locomotor testing rearing0.00.00.10.3-0.0-0.0-0.0
Locomotion in novel chamber1.01.31.70.9-1.11.11.3
Locomotion in novel chamber post-restriction0.10.10.1-0.20.4-0.3-0.3
Fecal boli incidents, locomotor time 10.00.00.1-0.30.1-0.1-0.0
Change in fecal boli incidents, locomotor task0.10.10.1-0.00.4-0.4-0.4
Time >=10cm from walls, locomotor time 10.40.40.60.8-0.60.60.5
Bouts of movement, locomotor time 10.10.10.20.4-0.20.20.3
Total resting periods, locomotor time 10.10.20.30.5-0.40.40.3
Rest time, locomotor task time 10.10.10.10.3-0.30.30.3
Distance moved, locomotor task time 10.30.40.4-0.60.6-0.6-0.6
Vertical activity count, locomotor time 10.00.00.00.00.1-0.10.2
Time >=10cm from walls, locomotor time 22.22.42.6-1.41.6-1.6-1.6
Bouts of movement, locomotor time 21.11.22.41.5-0.90.90.8
Total resting periods, locomotor time 21.11.22.21.5-1.01.00.8
Rest time, locomotor task time 20.80.91.00.9-0.90.91.0
Distance moved, locomotor task time 22.52.93.3-1.81.7-1.7-1.5
Vertical activity count, locomotor time 21.01.11.2-1.11.1-1.1-0.8
Light reinforcement 10.30.50.6-0.70.7-0.5-0.8
Light reinforcement 20.40.50.6-0.80.8-0.7-0.7
Bone: marrow area0.61.31.51.1-1.21.11.1
Bone: maximum diameter0.81.41.61.3-1.31.21.1
Bone: maximum force0.10.10.2-0.30.4-0.4-0.4
Bone: maximum moment0.10.10.20.4-0.30.30.3
Mean time between licks in bursts6.28.810.0-3.22.8-2.9-2.9
Mean num. licks in bursts0.00.00.00.2-0.20.00.0
Cd content in liver1.21.41.81.3-1.11.11.1
Co content in liver0.20.20.2-0.50.4-0.4-0.4
Cu content in liver0.30.40.5-0.70.6-0.6-0.6
Fe content in liver0.81.01.31.1-1.01.00.9
K content in liver1.21.11.5-1.21.0-1.1-1.0
Mg content in liver0.30.30.50.4-0.60.50.7
Mn content in liver0.10.10.1-0.40.4-0.4-0.3
Na content in liver3.23.33.8-1.91.8-1.8-1.8
Rb content in liver0.70.80.9-0.90.9-0.9-0.9
Se content in liver0.91.21.30.9-1.11.11.2
Sr content in liver0.10.10.10.2-0.20.30.3
Zn content in liver0.60.70.80.8-0.80.80.9
Bone: minimum diameter1.83.43.92.0-1.81.81.7
Time in familiar zone, hab. session 12.92.73.0-1.71.6-1.6-1.6
Time in novel zone, hab. session 17.16.97.52.7-2.62.62.6
Total zone transitions, hab. session 11.21.71.8-1.41.3-1.2-1.4
Total locomotion distance, hab. session 10.10.20.4-0.70.2-0.3-0.2
Locomotion velocity, hab. session 10.20.20.6-0.80.3-0.3-0.3
Time in familiar zone, hab. session 20.50.50.6-0.60.7-0.8-0.8
Time in novel zone, hab. session 21.01.01.10.9-1.01.01.0
Total zone transitions, hab. session 25.26.78.1-2.92.5-2.5-2.5
Total locomotion distance, hab. session 22.73.64.9-2.21.8-1.8-1.7
Locomotion velocity, hab. session 22.33.14.6-2.11.6-1.7-1.5
Novel to familiar place preference ratio1.01.01.51.2-0.90.91.0
Novelty place preference0.60.60.91.0-0.70.70.8
Time in novel zone, NPP test0.80.81.21.1-0.80.80.9
Total zone transitions, NPP test1.72.42.5-1.51.5-1.6-1.6
Total locomotion distance, NPP test0.30.40.6-0.70.6-0.7-0.6
Locomotion velocity, NPP test0.40.50.6-0.80.7-0.7-0.7
Intraocular pressure0.00.10.10.3-0.20.20.1
Delta distance traveled before/after self-admin1.71.92.31.5-1.41.41.2
Delta ambulatory time before/after self-admin1.31.41.71.3-1.21.21.0
Parametrial fat weight4.28.18.62.9-2.82.82.9
Pavlov. Cond. lever latency0.50.71.1-1.00.8-0.8-0.7
Pavlov. Cond. magazine entry latency0.30.40.6-0.40.7-0.7-0.8
Pavlov. Cond. change in total contacts0.50.50.70.8-0.70.70.6
Pavlov. Cond. index score0.00.10.20.5-0.10.10.0
Pavlov. Cond. latency score0.10.10.30.5-0.20.20.1
Pavlov. Cond. lever contacts0.10.10.20.5-0.40.30.2
Pavlov. Cond. magazine entry number0.50.70.80.6-0.80.90.9
Pavlov. Cond. intertrial magazine entries0.50.60.7-0.70.8-0.7-0.8
Pavlov. Cond. lever-magazine prob. diff.0.00.10.20.5-0.10.00.0
Pavlov. Cond. response bias0.10.10.2-0.10.3-0.3-0.4
Pavlov. Cond. lever latency1.21.62.1-1.51.2-1.2-1.2
Pavlov. Cond. magazine entry latency1.82.12.21.5-1.51.41.4
Pavlov. Cond. change in total contacts2.12.93.11.6-1.71.71.7
Pavlov. Cond. index score1.82.32.41.6-1.51.51.5
Pavlov. Cond. latency score1.41.71.81.4-1.31.31.3
Pavlov. Cond. lever contacts2.43.33.61.9-1.81.81.8
Pavlov. Cond. magazine entry number0.60.70.8-0.90.9-0.9-0.8
Pavlov. Cond. intertrial magazine entries1.41.92.0-1.41.4-1.4-1.4
Pavlov. Cond. lever-magazine prob. diff.1.72.22.31.5-1.51.51.4
Pavlov. Cond. response bias2.02.73.01.7-1.71.61.6
Time in closed arm before self-admin0.00.00.0-0.10.1-0.1-0.2
Time in closed arm after self-admin0.00.00.0-0.10.00.0-0.1
Time in open arm before self-admin0.10.10.10.2-0.30.20.4
Time in open arm after self-admin2.93.23.71.9-1.71.71.8
Bone: periosteal estimation0.71.51.71.3-1.31.21.2
Bone: periosteal perimeter0.91.41.81.4-1.21.21.0
Bone: post-yield work1.42.02.11.4-1.41.41.4
Progressive ratio test 1 active lever presses3.53.74.2-1.72.0-2.0-2.0
Progressive ratio test 1 breakpoint4.44.65.1-1.92.2-2.2-2.2
Progressive ratio test 1 inactive lever presses1.11.21.5-0.91.1-1.2-1.2
Progressive ratio test 2 active lever presses0.20.20.3-0.30.5-0.4-0.3
Progressive ratio test 2 breakpoint0.20.20.3-0.30.6-0.6-0.4
Progressive ratio test 2 inactive lever presses0.00.00.00.20.0-0.1-0.1
Incentive Sensitization - Responses0.10.10.20.4-0.20.30.5
Incentive Sensitization - Breakpoint0.20.20.30.5-0.40.40.6
Sum of active levers in priming session hrs 5-61.91.82.5-1.61.2-1.3-1.2
Progressive ratio0.30.40.5-0.50.7-0.6-0.6
Food seeking constrained by brief footshock5.06.16.8-2.22.6-2.6-2.5
Seeking ratio, punishment vs. effort0.91.11.3-1.01.0-1.1-1.1
Retroperitoneal fat weight0.30.91.0-1.00.9-0.9-1.0
Reaction time number correct0.00.00.10.1-0.20.20.2
Reaction time mean minus median0.60.81.11.0-0.90.80.8
Reaction time mean minus median AUC0.10.20.20.5-0.50.40.4
Reaction time num false alarms0.30.40.50.7-0.70.70.6
Reaction time num false alarms AUC0.91.31.41.2-1.11.11.1
Reaction time trials correct on left0.00.00.10.1-0.20.20.2
Reaction time trials on left0.00.10.10.1-0.30.20.3
Reaction time mean0.71.01.21.0-1.10.91.0
Reaction time mean AUC0.30.50.60.7-0.80.60.7
Median of all reaction times0.60.91.10.9-1.10.80.9
Reaction time omissions0.30.40.60.7-0.60.50.6
Reaction time false alarm rate1.01.41.61.3-1.21.21.1
Reaction time premature initiation rate0.20.20.5-0.70.3-0.3-0.4
Reaction time premature initiations0.20.30.7-0.80.4-0.4-0.5
Std. dev. reaction times2.13.03.31.8-1.81.61.6
Reaction time trials completed0.00.10.10.1-0.30.20.3
Reaction time trials AUC0.00.10.10.2-0.30.20.3
Run reversals in cocaine runway, females0.00.00.0-0.10.00.1-0.0
Run reversals in cocaine runway, males0.50.50.60.6-0.70.70.8
Latency to leave start box in cocaine runway0.30.40.5-0.70.5-0.6-0.7
Latency to leave start box in cocaine runway, F0.00.00.1-0.10.1-0.3-0.3
Latency to leave start box in cocaine runway, M0.60.51.1-1.00.6-0.5-0.6
Std. dev. time between licks in bursts0.00.00.0-0.20.00.00.1
Total sessions with >9 infusions1.21.31.6-1.11.3-1.1-1.2
Short access day 1 total inactive lever presses0.30.30.60.8-0.40.60.4
Short access day 10 total inactive lever presses2.12.32.61.4-1.61.51.6
Short access day 1 total infusions0.00.00.00.20.10.10.1
Short access day 10 total infusions0.00.00.1-0.10.3-0.2-0.2
Short access total infusions0.00.00.00.20.00.10.0
Short access day 1 locomotion0.30.40.70.8-0.50.50.5
Short access day 10 total locomotion0.10.10.10.3-0.10.10.4
Short access total locomotion0.10.10.2-0.30.4-0.4-0.3
One hour access (0.3 mA shock)0.00.10.10.1-0.30.20.3
Compulsive drug intake5.45.45.72.3-2.42.42.3
One hour access (shock baseline)2.12.42.5-1.51.6-1.6-1.5
Social response proportion0.20.20.40.4-0.50.40.6
Social responses0.60.81.0-0.60.9-1.0-1.0
Social time0.10.10.2-0.00.4-0.4-0.3
Soleus weight0.10.30.4-0.60.5-0.5-0.5
Bone: stiffness0.10.10.1-0.20.3-0.3-0.4
Tibialis anterior weight8.328.529.75.5-5.25.45.3
Time to tail flick, vehicle, before self-admin2.32.32.61.5-1.61.51.5
Time to tail flick, vehicle, after self-admin1.71.82.21.5-1.31.31.3
Time to tail flick, test, before self-admin0.20.20.20.4-0.50.40.4
Time to tail flick, test, after self-admin0.10.10.20.2-0.40.20.3
Delta time to tail flick, vehicle, before/after SA0.50.50.6-0.70.8-0.7-0.6
Delta time to tail flick, test, before/after SA0.30.30.30.6-0.50.50.5
Tibia length2.36.56.9-2.62.6-2.5-2.6
Ambulatory time before self-admin0.00.00.1-0.40.2-0.1-0.1
Ambulatory time after self-admin1.41.51.91.1-1.31.41.1
Bone: tissue strength0.70.70.80.9-0.80.80.7
Total heroin consumption1.41.72.5-1.61.2-1.3-1.1
Bone: trabecular number0.00.00.0-0.00.1-0.1-0.2
Bone: trabecular spacing0.10.10.2-0.40.2-0.2-0.2
Bone: trabecular thickness0.10.10.1-0.20.3-0.3-0.3
Bone: trabecular tissue density16.423.223.5-4.84.8-4.8-4.8
Water consumed over 24 hours0.20.20.30.5-0.50.50.4
Number of responses in last shaping day0.00.00.00.10.2-0.0-0.1