LOC102554169

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression LOC102554169 0.15 0.11 3.0e-03 0.06 0.04 0.05 0.06 2.4e-04 3.4e-03 8.5e-04 5.4e-04
2 Liver gene expression LOC102554169 0.04 0.02 1.0e-04 0.01 0.01 0 0 6.7e-02 1.2e-02 2.5e-01 7.2e-02
3 PL gene expression LOC102554169 0.06 0.04 2.9e-08 0.08 0.07 0.07 0.07 1.0e-08 4.7e-08 1.6e-08 1.6e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.22.12.31.41.51.4
Area under the delay curve0.10.20.40.6-0.1-0.4
BMI with tail0.00.10.30.1-0.6-0.3
BMI without tail0.20.61.51.20.40.3
Body weight3.515.221.54.63.93.0
Weight adjusted by age0.20.20.30.50.40.6
Bone surface1.01.82.81.71.40.8
Bone volume1.62.84.22.11.71.1
Breakpoint value in progressive ratio session0.50.61.61.30.60.1
Number of licking bursts3.04.96.3-1.8-2.3-2.5
Context. condit. distance diff. score0.10.20.30.1-0.4-0.5
Locomotion velocity, session 10.10.10.20.2-0.00.4
Locomotion distance, session 10.70.92.41.60.4-0.3
Locomotion velocity, session 20.91.01.6-0.8-1.0-1.2
Locomotion distance, session 21.72.44.3-0.1-1.7-2.1
Locomotion velocity, session 30.40.40.9-0.4-0.6-0.9
Locomotion distance, session 31.41.63.51.90.5-0.9
Stereotopy head waving bouts, day 30.70.81.2-1.10.01.1
Stereotopy head waving duration, day 30.81.01.9-1.4-0.40.9
Locomotion velocity, session 70.60.71.91.40.2-0.4
Locomotion distance, session 70.40.51.21.10.5-0.1
Stereotopy head waving bouts, day 73.23.64.7-2.2-1.8-1.7
Stereotopy head waving duration, day 72.12.64.0-2.0-1.7-1.0
Locomotion velocity, session 83.64.35.8-1.6-2.4-2.1
Locomotion distance, session 81.82.75.1-0.3-1.7-2.3
Degree of sensitization distance0.30.30.5-0.60.30.7
Degree of sensitization stereotypy3.43.74.1-1.9-1.8-2.0
Conditioned locomotion0.91.01.4-1.2-1.0-0.8
Cocaine response after cond. corrected0.50.61.6-0.30.51.3
Cocaine response after cond. not corrected0.80.92.1-0.40.71.5
Cocaine response before conditioning0.30.40.90.51.00.1
Saline control response0.00.10.2-0.1-0.00.4
Bone: connectivity density0.20.30.40.60.50.2
Bone: cortical apparent density0.40.51.1-0.1-1.1-0.6
Bone: cortical area1.82.83.11.71.81.6
Bone: cortical porosity4.54.87.2-1.8-2.0-2.7
Bone: cortical porosity5.56.08.9-2.0-2.3-3.0
Bone: cortical thickness1.11.81.91.31.41.4
Bone: cortical thickness0.00.00.10.1-0.30.0
Bone: cortical tissue density0.50.71.5-0.2-1.2-0.8
Condit. Reinf. active minus inactive responses0.10.10.2-0.2-0.50.1
Condit. Reinf. active-inactive response ratio0.60.61.6-0.40.01.3
Condit. Reinf. active responses1.31.62.8-0.9-1.7-1.1
Condit. Reinf. inactive responses2.83.45.7-0.6-2.0-2.4
Incentive salience index mean0.10.20.4-0.1-0.7-0.3
Condit. Reinf. lever presses0.20.30.40.1-0.6-0.7
Condit. Reinf. active minus inactive responses0.50.71.21.10.80.5
Condit. Reinf. active-inactive response ratio0.00.00.0-0.1-0.10.1
Condit. Reinf. active responses1.21.62.71.61.40.4
Condit. Reinf. inactive responses0.70.91.51.21.1-0.4
Condit. Reinf. lever presses4.15.67.52.72.61.6
Condit. Reinf. lever reinforcers received1.21.73.11.81.40.2
Conditioned reinforcement - actives0.40.70.9-0.9-0.6-0.8
Conditioned reinforcement - inactives1.11.63.40.6-1.0-1.8
Conditioned locomotion1.82.32.7-1.6-1.7-1.4
Patch foraging indifference point 0 sec0.10.20.2-0.5-0.2-0.4
Patch foraging indifference point AUC0.30.40.6-0.6-0.8-0.5
Delay disc. indifference point, 0s delay0.90.92.41.5-0.2-0.6
Delay disc. indifference point, 16s delay0.10.20.30.6-0.1-0.4
Delay disc. indifference point, 2s delay1.11.23.31.80.6-0.2
Delay disc. indifference point, 24s delay1.01.12.61.60.80.3
Delay disc. indifference point, 4s delay0.70.71.6-0.2-0.8-1.3
Delay disc. indifference point, 8s delay0.00.00.0-0.20.1-0.2
Indifference point function ln k0.20.30.60.80.50.3
Indifference point function log k0.20.30.60.80.50.3
Patch foraging total patch changes 0 sec0.10.10.3-0.3-0.1-0.5
Patch foraging total patch changes 12 sec0.20.20.5-0.7-0.3-0.2
Patch foraging total patch changes 18 sec0.50.81.1-1.0-0.6-1.1
Patch foraging total patch changes 24 sec0.10.20.20.50.5-0.3
Patch foraging total patch changes 6 sec0.10.10.2-0.4-0.2-0.3
Patch foraging time to switch 0 sec0.61.13.1-1.8-0.6-0.0
Patch foraging water rate 0 sec0.30.71.10.2-1.1-1.0
Patch foraging water rate 12 sec0.30.61.30.60.3-1.1
Patch foraging water rate 18 sec0.20.30.5-0.3-0.4-0.7
Patch foraging water rate 24 sec1.52.15.00.3-1.1-2.2
Patch foraging water rate 6 sec0.81.22.41.50.3-1.0
Seeking ratio, delayed vs. immediate footshock0.81.02.21.50.4-0.7
Distance traveled before self-admin0.10.10.30.00.0-0.6
Distance traveled after self-admin0.70.91.80.81.40.4
Extensor digitorum longus weight0.72.65.61.30.82.4
Bone: elastic displacement0.20.20.3-0.60.40.3
Bone: elastic work1.72.22.71.51.61.3
Bone: endosteal estimation0.81.72.31.21.51.1
Bone: endosteal perimeter0.40.81.21.01.10.5
Epididymis fat weight0.30.92.11.40.50.6
Delta time in closed arm before/after self-admin1.31.21.61.31.01.0
Delta time in open arm before/after self-admin0.60.61.1-1.0-0.6-0.6
Diff in mean of infusions in LGA sessions0.81.01.4-1.0-1.2-0.7
Delay discount exponential model param0.10.10.3-0.6-0.10.2
Extinction: sum of active levers before priming5.45.97.02.02.62.6
Active lever presses in extinction session 63.73.76.00.92.12.4
Bone: final force2.23.55.32.31.71.6
Bone: final moment2.94.76.72.62.01.9
Food consumed during 24 hour testing period0.30.40.90.5-0.1-0.9
Glucose0.10.20.4-0.70.20.2
Heart weight0.30.40.60.7-0.4-0.8
Delay discount hyperbolic model param0.10.10.4-0.60.00.3
Intermittent access intake day 1-15 change1.63.23.61.81.91.6
Intermittent access intake escalation1.63.23.61.81.91.7
Intermittent access intake escalation 21.31.52.10.81.51.4
Intermitt. access day 1 inactive lever presses0.51.94.42.11.10.1
Intermitt. access day 15 inactive lever presses0.40.81.51.2-0.2-0.9
Intermitt. access escalation Index0.71.02.0-0.6-0.9-1.4
Intermittent access day 1 total infusions3.96.310.2-1.7-2.4-3.2
Intermittent access day 15 total infusions0.40.61.60.2-0.4-1.3
Intermittent access terminal intake (last 3 days)1.62.14.4-0.7-1.2-2.1
Intermittent access total infusions2.22.65.0-1.0-1.4-2.2
Intermittent access day 1 locomotion4.55.711.0-1.0-2.3-3.3
Intermittent access day 15 total locomotion0.71.23.0-0.2-0.8-1.7
Intermittent access total locomotion2.73.25.5-1.1-1.7-2.3
Intermittent access standard deviation0.71.52.41.51.40.5
Left kidney weight2.813.217.14.13.82.8
Right kidney weight3.817.220.44.54.33.6
Cocaine induced anxiety0.30.40.70.70.40.8
Post-drug Anxiety0.10.10.10.1-0.30.4
Baseline Anxiety0.70.81.5-0.5-0.8-1.2
Tail length4.116.221.74.74.32.9
Length with tail5.524.031.85.65.33.5
Length without tail3.611.516.94.13.42.4
Times rat made contact with spout0.10.10.3-0.00.30.6
Lifetime Intake1.92.34.0-1.1-1.3-2.0
Liver weight, left0.30.40.7-0.9-0.7-0.1
Liver weight, right0.10.10.30.5-0.30.0
Locomotor activity0.10.20.5-0.7-0.10.4
Locomotor testing distance0.30.51.3-1.1-0.4-0.0
Locomotor testing rearing0.81.52.3-1.5-1.2-0.9
Locomotion in novel chamber0.50.71.5-1.2-0.40.5
Locomotion in novel chamber post-restriction0.10.10.3-0.6-0.30.1
Fecal boli incidents, locomotor time 11.72.54.2-2.1-1.7-0.6
Change in fecal boli incidents, locomotor task1.01.02.00.50.81.4
Time >=10cm from walls, locomotor time 10.00.00.00.0-0.10.1
Bouts of movement, locomotor time 10.70.81.41.0-0.1-1.2
Total resting periods, locomotor time 10.50.51.10.7-0.1-1.0
Rest time, locomotor task time 10.81.01.8-1.0-1.3-0.4
Distance moved, locomotor task time 10.00.10.10.20.2-0.3
Vertical activity count, locomotor time 10.30.71.21.11.0-0.0
Time >=10cm from walls, locomotor time 21.11.62.4-1.1-1.5-1.2
Bouts of movement, locomotor time 20.20.30.7-0.3-0.2-0.8
Total resting periods, locomotor time 20.30.50.8-0.7-0.4-0.9
Rest time, locomotor task time 20.40.61.0-1.0-0.8-0.4
Distance moved, locomotor task time 20.20.20.50.4-0.3-0.7
Vertical activity count, locomotor time 20.60.81.91.40.6-0.2
Light reinforcement 10.30.71.6-0.2-0.7-1.3
Light reinforcement 20.81.22.6-0.6-1.6-0.8
Bone: marrow area0.81.82.51.11.61.2
Bone: maximum diameter1.12.12.41.41.61.4
Bone: maximum force2.85.07.32.72.11.8
Bone: maximum moment3.56.18.52.92.42.0
Mean time between licks in bursts0.10.40.60.4-0.6-0.8
Mean num. licks in bursts3.04.66.41.72.12.5
Cd content in liver0.20.30.6-0.8-0.10.4
Co content in liver0.30.30.4-0.7-0.30.7
Cu content in liver1.72.03.61.91.20.9
Fe content in liver0.20.20.4-0.3-0.6-0.2
K content in liver0.00.00.0-0.2-0.1-0.1
Mg content in liver0.10.10.2-0.4-0.30.4
Mn content in liver0.80.92.4-1.5-0.30.5
Na content in liver0.10.20.30.30.6-0.3
Rb content in liver0.10.10.20.2-0.50.1
Se content in liver1.61.92.9-1.7-1.7-0.1
Sr content in liver0.60.51.4-1.2-0.3-0.0
Zn content in liver0.40.50.8-0.7-0.90.3
Bone: minimum diameter1.01.82.91.71.50.4
Time in familiar zone, hab. session 14.54.35.92.01.72.4
Time in novel zone, hab. session 15.45.45.7-2.4-2.2-2.3
Total zone transitions, hab. session 10.20.30.30.5-0.5-0.5
Total locomotion distance, hab. session 10.10.20.4-0.30.1-0.7
Locomotion velocity, hab. session 10.10.10.2-0.40.2-0.4
Time in familiar zone, hab. session 21.81.93.50.71.41.9
Time in novel zone, hab. session 20.90.91.4-0.7-1.0-1.2
Total zone transitions, hab. session 23.24.15.5-1.6-2.4-2.1
Total locomotion distance, hab. session 21.82.33.3-1.3-1.4-1.8
Locomotion velocity, hab. session 21.52.02.7-1.3-1.3-1.6
Novel to familiar place preference ratio0.00.00.00.20.1-0.2
Novelty place preference0.00.00.10.0-0.0-0.4
Time in novel zone, NPP test0.10.10.3-0.1-0.3-0.5
Total zone transitions, NPP test0.10.10.20.5-0.2-0.2
Total locomotion distance, NPP test0.71.02.00.91.40.4
Locomotion velocity, NPP test0.71.02.10.81.40.5
Intraocular pressure0.40.51.2-1.1-0.6-0.2
Delta distance traveled before/after self-admin1.41.52.21.11.51.1
Delta ambulatory time before/after self-admin1.01.31.91.11.40.8
Parametrial fat weight1.02.46.20.01.02.5
Pavlov. Cond. lever latency1.01.21.90.91.01.4
Pavlov. Cond. magazine entry latency2.53.34.0-2.0-1.4-2.0
Pavlov. Cond. change in total contacts3.33.55.8-1.4-1.7-2.4
Pavlov. Cond. index score2.22.83.6-1.7-1.4-1.9
Pavlov. Cond. latency score1.82.33.4-1.4-1.3-1.8
Pavlov. Cond. lever contacts0.80.91.5-0.8-0.7-1.2
Pavlov. Cond. magazine entry number2.53.14.11.81.42.0
Pavlov. Cond. intertrial magazine entries0.10.10.20.5-0.5-0.0
Pavlov. Cond. lever-magazine prob. diff.3.03.74.5-2.0-1.6-2.1
Pavlov. Cond. response bias1.41.72.7-1.7-0.9-1.3
Pavlov. Cond. lever latency2.83.86.8-2.6-2.0-0.8
Pavlov. Cond. magazine entry latency1.21.52.31.51.40.4
Pavlov. Cond. change in total contacts3.25.28.12.82.51.0
Pavlov. Cond. index score2.83.86.22.52.10.8
Pavlov. Cond. latency score2.33.05.32.31.90.6
Pavlov. Cond. lever contacts3.04.17.22.72.10.9
Pavlov. Cond. magazine entry number2.93.65.8-2.4-2.0-0.9
Pavlov. Cond. intertrial magazine entries0.50.71.3-1.2-0.9-0.2
Pavlov. Cond. lever-magazine prob. diff.2.73.65.62.42.10.9
Pavlov. Cond. response bias3.64.98.93.02.30.9
Time in closed arm before self-admin1.92.53.3-1.3-1.6-1.8
Time in closed arm after self-admin0.10.20.30.3-0.5-0.3
Time in open arm before self-admin3.53.85.41.62.31.9
Time in open arm after self-admin0.70.71.50.31.20.8
Bone: periosteal estimation1.83.74.51.92.11.7
Bone: periosteal perimeter0.71.21.90.81.41.1
Bone: post-yield work0.91.33.11.80.90.1
Progressive ratio test 1 active lever presses0.91.12.7-0.3-0.6-1.7
Progressive ratio test 1 breakpoint0.91.12.9-0.2-0.6-1.7
Progressive ratio test 1 inactive lever presses1.72.55.50.6-1.3-2.4
Progressive ratio test 2 active lever presses0.30.30.9-0.1-0.4-1.0
Progressive ratio test 2 breakpoint0.40.51.2-0.1-0.5-1.1
Progressive ratio test 2 inactive lever presses0.61.01.51.1-0.7-1.2
Incentive Sensitization - Responses0.10.20.30.1-0.5-0.6
Incentive Sensitization - Breakpoint0.10.20.30.1-0.5-0.5
Sum of active levers in priming session hrs 5-60.00.00.10.10.00.3
Progressive ratio0.50.81.3-0.7-0.7-1.1
Food seeking constrained by brief footshock0.60.81.31.01.10.1
Seeking ratio, punishment vs. effort0.40.61.31.10.60.2
Retroperitoneal fat weight0.41.84.6-0.60.72.2
Reaction time number correct0.10.20.60.80.30.3
Reaction time mean minus median0.20.50.70.10.90.8
Reaction time mean minus median AUC0.61.42.10.71.41.3
Reaction time num false alarms0.60.91.2-1.1-0.9-0.7
Reaction time num false alarms AUC0.91.42.3-1.5-1.1-0.8
Reaction time trials correct on left0.10.20.60.80.30.3
Reaction time trials on left0.10.30.60.80.30.3
Reaction time mean0.10.10.2-0.10.50.2
Reaction time mean AUC0.10.10.2-0.40.40.2
Median of all reaction times0.10.10.2-0.5-0.0-0.3
Reaction time omissions0.20.30.6-0.30.30.8
Reaction time false alarm rate1.01.42.3-1.5-1.1-0.8
Reaction time premature initiation rate0.81.22.4-0.6-0.8-1.5
Reaction time premature initiations0.40.81.8-0.2-0.7-1.3
Std. dev. reaction times0.20.40.90.30.90.5
Reaction time trials completed0.10.30.60.80.30.3
Reaction time trials AUC0.20.30.40.70.40.6
Run reversals in cocaine runway, females0.90.91.91.40.80.3
Run reversals in cocaine runway, males1.61.63.8-0.50.81.9
Latency to leave start box in cocaine runway0.50.61.51.20.4-0.2
Latency to leave start box in cocaine runway, F0.50.61.61.3-0.2-0.4
Latency to leave start box in cocaine runway, M0.10.10.1-0.30.2-0.3
Std. dev. time between licks in bursts1.72.34.4-1.0-1.3-2.1
Total sessions with >9 infusions0.81.01.3-1.1-0.9-1.0
Short access day 1 total inactive lever presses1.92.53.61.8-0.6-1.9
Short access day 10 total inactive lever presses1.12.77.62.80.5-0.3
Short access day 1 total infusions0.30.40.80.2-0.5-0.9
Short access day 10 total infusions0.91.21.5-1.2-0.7-1.2
Short access total infusions1.01.31.7-1.1-0.9-1.3
Short access day 1 locomotion0.60.80.9-0.7-0.9-1.0
Short access day 10 total locomotion0.91.63.9-0.6-0.7-2.0
Short access total locomotion2.73.24.2-1.6-1.7-2.1
One hour access (0.3 mA shock)1.11.33.70.4-0.4-1.9
Compulsive drug intake0.70.91.90.3-0.8-1.4
One hour access (shock baseline)0.30.51.3-0.3-0.4-1.1
Social response proportion1.51.72.71.71.01.2
Social responses0.40.51.01.00.30.5
Social time1.62.24.82.21.20.4
Soleus weight0.10.20.40.40.20.7
Bone: stiffness2.03.25.52.31.41.5
Tibialis anterior weight0.82.65.70.91.22.4
Time to tail flick, vehicle, before self-admin0.40.50.9-0.3-0.6-0.9
Time to tail flick, vehicle, after self-admin0.20.30.8-0.9-0.1-0.1
Time to tail flick, test, before self-admin0.60.61.20.7-0.4-1.1
Time to tail flick, test, after self-admin0.10.10.2-0.3-0.4-0.2
Delta time to tail flick, vehicle, before/after SA0.20.10.3-0.50.30.2
Delta time to tail flick, test, before/after SA0.60.71.5-1.2-0.20.7
Tibia length2.77.511.13.32.72.0
Ambulatory time before self-admin0.10.10.40.0-0.1-0.6
Ambulatory time after self-admin1.61.92.91.61.70.6
Bone: tissue strength1.61.63.61.91.00.4
Total heroin consumption0.20.30.60.80.1-0.5
Bone: trabecular number1.32.13.21.81.51.0
Bone: trabecular spacing0.20.30.6-0.80.40.3
Bone: trabecular thickness0.40.51.21.10.30.4
Bone: trabecular tissue density0.50.71.1-1.0-0.11.1
Water consumed over 24 hours0.81.01.71.31.00.7
Number of responses in last shaping day0.30.30.90.2-0.1-0.9