LOC102553702

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC102553702 0.78 0.05 0.0e+00 0.62 0.62 0.64 0.63 5.2e-87 3.6e-88 7.4e-92 1.1e-89
2 Liver isoform ratio XR_005499663.2 0.06 0.04 1.8e-08 0.06 0.06 0.06 0.06 5.0e-07 1.5e-07 2.7e-07 5.0e-07
3 Liver intron excision ratio chr1_243922142_243923645 0.07 0.05 9.5e-06 0.03 0.04 0.03 0.04 6.7e-04 6.0e-05 1.4e-04 7.1e-05
4 Liver intron excision ratio chr1_243922570_243922758 0.02 0.01 4.9e-03 0.01 0.01 0.01 0.01 1.3e-02 1.1e-02 7.3e-03 3.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density8.113.919.2-4.4-4.1-3.72.5
Area under the delay curve0.30.30.90.50.40.2-1.0
BMI with tail0.10.40.9-1.0-0.6-0.40.2
BMI without tail0.00.10.30.0-0.00.2-0.6
Body weight0.93.85.1-2.3-2.2-1.71.5
Weight adjusted by age0.10.20.5-0.5-0.4-0.7-0.0
Bone surface3.76.89.8-3.1-3.0-2.51.4
Bone volume5.610.113.6-3.6-3.7-3.21.9
Breakpoint value in progressive ratio session0.40.50.7-0.7-0.5-0.70.8
Number of licking bursts1.52.43.01.71.71.4-1.3
Context. condit. distance diff. score2.12.54.3-1.3-1.9-2.10.8
Locomotion velocity, session 13.23.54.21.61.92.0-1.9
Locomotion distance, session 10.10.20.30.30.50.5-0.0
Locomotion velocity, session 21.11.31.51.11.11.2-1.2
Locomotion distance, session 20.30.40.60.80.70.6-0.1
Locomotion velocity, session 30.10.10.2-0.1-0.5-0.40.0
Locomotion distance, session 30.40.50.8-0.2-0.9-0.90.5
Stereotopy head waving bouts, day 30.10.20.5-0.00.20.4-0.7
Stereotopy head waving duration, day 30.10.10.2-0.20.20.2-0.4
Locomotion velocity, session 71.21.32.1-0.5-1.0-1.41.5
Locomotion distance, session 71.21.52.6-0.7-1.1-1.41.6
Stereotopy head waving bouts, day 70.60.61.50.50.50.7-1.2
Stereotopy head waving duration, day 70.30.41.10.10.30.7-1.0
Locomotion velocity, session 80.20.30.3-0.5-0.5-0.60.6
Locomotion distance, session 80.50.81.6-0.4-1.0-1.30.6
Degree of sensitization distance0.10.10.50.10.2-0.20.7
Degree of sensitization stereotypy0.20.20.70.00.10.4-0.8
Conditioned locomotion0.70.81.3-0.8-1.0-1.10.3
Cocaine response after cond. corrected0.10.20.6-0.0-0.2-0.1-0.8
Cocaine response after cond. not corrected0.10.10.2-0.1-0.4-0.4-0.1
Cocaine response before conditioning0.20.30.60.40.40.30.8
Saline control response0.20.30.90.1-0.5-0.90.2
Bone: connectivity density4.06.39.9-3.2-2.6-2.31.7
Bone: cortical apparent density1.52.03.01.31.41.2-1.7
Bone: cortical area3.24.97.1-2.0-2.7-2.31.8
Bone: cortical porosity0.00.00.10.10.30.10.3
Bone: cortical porosity0.00.00.2-0.1-0.0-0.10.4
Bone: cortical thickness0.30.50.9-0.3-1.0-0.80.6
Bone: cortical thickness0.10.10.30.50.30.1-0.5
Bone: cortical tissue density1.62.13.21.31.41.3-1.8
Condit. Reinf. active minus inactive responses1.21.32.01.41.00.9-1.3
Condit. Reinf. active-inactive response ratio1.71.92.11.41.31.5-1.3
Condit. Reinf. active responses0.20.20.50.5-0.2-0.3-0.7
Condit. Reinf. inactive responses1.21.52.7-0.9-1.5-1.60.4
Incentive salience index mean1.11.32.81.71.00.8-1.0
Condit. Reinf. lever presses1.21.73.21.81.31.1-0.7
Condit. Reinf. active minus inactive responses0.30.41.1-0.1-0.8-1.0-0.0
Condit. Reinf. active-inactive response ratio0.20.20.30.3-0.3-0.5-0.6
Condit. Reinf. active responses1.21.72.9-1.0-1.7-1.70.4
Condit. Reinf. inactive responses0.81.11.8-1.0-1.4-1.10.5
Condit. Reinf. lever presses0.10.10.20.0-0.4-0.4-0.5
Condit. Reinf. lever reinforcers received0.71.01.8-0.7-1.3-1.40.2
Conditioned reinforcement - actives1.22.04.5-2.1-1.1-0.81.2
Conditioned reinforcement - inactives1.01.52.9-1.7-1.1-1.01.0
Conditioned locomotion1.21.53.5-1.9-0.9-0.51.1
Patch foraging indifference point 0 sec0.20.30.9-0.20.51.00.2
Patch foraging indifference point AUC0.81.21.41.21.21.2-0.8
Delay disc. indifference point, 0s delay0.40.41.2-0.1-0.6-1.10.1
Delay disc. indifference point, 16s delay0.10.10.2-0.4-0.4-0.3-0.3
Delay disc. indifference point, 2s delay0.10.10.40.00.1-0.1-0.6
Delay disc. indifference point, 24s delay1.71.93.11.61.11.0-1.7
Delay disc. indifference point, 4s delay0.10.10.20.0-0.1-0.3-0.4
Delay disc. indifference point, 8s delay1.82.22.51.41.51.4-1.6
Indifference point function ln k1.01.72.3-1.3-1.5-1.40.8
Indifference point function log k1.01.72.3-1.3-1.5-1.40.8
Patch foraging total patch changes 0 sec0.10.30.8-0.30.40.90.2
Patch foraging total patch changes 12 sec1.41.82.81.11.61.7-0.7
Patch foraging total patch changes 18 sec0.30.40.60.30.70.8-0.7
Patch foraging total patch changes 24 sec0.20.30.50.50.60.7-0.1
Patch foraging total patch changes 6 sec1.32.04.01.11.62.0-0.4
Patch foraging time to switch 0 sec0.50.91.21.11.10.9-0.8
Patch foraging water rate 0 sec0.30.61.1-0.8-0.7-0.61.0
Patch foraging water rate 12 sec0.40.71.5-0.9-0.7-0.31.2
Patch foraging water rate 18 sec1.01.53.1-1.1-1.0-0.81.8
Patch foraging water rate 24 sec1.62.33.6-1.2-1.5-1.41.9
Patch foraging water rate 6 sec0.00.00.1-0.3-0.3-0.0-0.0
Seeking ratio, delayed vs. immediate footshock0.10.10.20.40.10.0-0.3
Distance traveled before self-admin0.20.30.80.90.40.2-0.4
Distance traveled after self-admin0.30.30.5-0.7-0.5-0.7-0.2
Extensor digitorum longus weight0.41.73.0-0.3-1.4-1.71.3
Bone: elastic displacement2.22.53.31.21.81.7-1.5
Bone: elastic work0.70.91.40.61.21.0-1.0
Bone: endosteal estimation4.59.913.2-3.6-3.6-3.12.1
Bone: endosteal perimeter5.611.915.1-3.9-3.6-3.23.0
Epididymis fat weight1.03.44.5-2.1-2.1-2.10.7
Delta time in closed arm before/after self-admin1.11.01.70.91.21.3-0.4
Delta time in open arm before/after self-admin0.20.20.50.2-0.3-0.7-0.6
Diff in mean of infusions in LGA sessions0.40.50.6-0.8-0.7-0.70.8
Delay discount exponential model param0.30.40.9-0.5-0.5-0.31.0
Extinction: sum of active levers before priming0.10.10.4-0.1-0.3-0.20.7
Active lever presses in extinction session 61.71.73.3-1.1-1.3-1.80.8
Bone: final force1.22.02.7-1.4-1.6-1.31.2
Bone: final moment1.11.82.4-1.5-1.6-1.11.2
Food consumed during 24 hour testing period0.10.20.30.40.30.6-0.2
Glucose0.00.00.10.30.00.1-0.3
Heart weight0.30.51.30.10.41.2-0.6
Delay discount hyperbolic model param0.40.40.9-0.5-0.5-0.41.0
Intermittent access intake day 1-15 change1.32.65.4-2.3-1.3-0.71.8
Intermittent access intake escalation1.32.75.0-2.2-1.4-0.91.7
Intermittent access intake escalation 20.80.91.9-1.4-0.6-0.41.1
Intermitt. access day 1 inactive lever presses0.20.61.11.00.50.3-1.0
Intermitt. access day 15 inactive lever presses0.91.93.7-1.9-1.4-1.10.9
Intermitt. access escalation Index0.40.61.21.10.90.7-0.4
Intermittent access day 1 total infusions1.62.54.4-2.1-1.5-1.41.3
Intermittent access day 15 total infusions4.26.211.1-3.3-2.4-1.82.2
Intermittent access terminal intake (last 3 days)3.34.38.5-2.9-1.9-1.41.8
Intermittent access total infusions3.33.97.0-2.6-1.8-1.51.7
Intermittent access day 1 locomotion1.62.03.0-1.7-1.4-1.21.2
Intermittent access day 15 total locomotion2.13.97.9-2.8-1.9-1.41.5
Intermittent access total locomotion3.33.97.0-2.6-1.8-1.71.6
Intermittent access standard deviation0.81.72.9-1.7-1.4-0.91.2
Left kidney weight0.31.52.0-1.4-1.4-0.91.1
Right kidney weight0.10.30.6-0.7-0.50.00.8
Cocaine induced anxiety0.50.71.1-0.5-0.7-1.01.0
Post-drug Anxiety0.50.50.6-0.8-0.8-0.70.4
Baseline Anxiety0.20.20.4-0.6-0.6-0.2-0.4
Tail length0.20.91.7-0.8-1.3-1.20.2
Length with tail1.14.96.7-2.3-2.6-2.11.8
Length without tail3.09.510.8-3.1-3.3-3.02.9
Times rat made contact with spout0.10.20.50.0-0.3-0.70.0
Lifetime Intake3.24.07.5-2.7-1.8-1.51.7
Liver weight, left0.50.91.6-0.9-1.3-1.00.4
Liver weight, right1.62.74.1-2.0-1.8-1.51.2
Locomotor activity0.50.81.20.70.80.8-1.1
Locomotor testing distance0.81.52.10.91.41.4-1.0
Locomotor testing rearing0.10.10.3-0.1-0.3-0.40.5
Locomotion in novel chamber1.31.63.1-1.1-1.5-1.80.1
Locomotion in novel chamber post-restriction1.62.54.0-1.2-2.0-2.01.0
Fecal boli incidents, locomotor time 10.20.30.9-0.2-0.1-0.41.0
Change in fecal boli incidents, locomotor task0.30.30.50.60.50.70.1
Time >=10cm from walls, locomotor time 12.62.83.8-0.8-2.0-1.91.7
Bouts of movement, locomotor time 10.50.61.3-1.2-0.5-0.50.7
Total resting periods, locomotor time 10.80.91.7-1.3-0.6-0.71.0
Rest time, locomotor task time 10.10.20.3-0.50.50.30.4
Distance moved, locomotor task time 10.50.71.71.30.00.1-1.1
Vertical activity count, locomotor time 10.00.00.10.2-0.3-0.1-0.1
Time >=10cm from walls, locomotor time 20.10.20.30.3-0.3-0.50.5
Bouts of movement, locomotor time 20.71.12.40.91.51.2-0.0
Total resting periods, locomotor time 20.61.12.40.81.51.20.1
Rest time, locomotor task time 20.20.20.5-0.50.1-0.10.7
Distance moved, locomotor task time 20.40.51.10.9-0.2-0.2-1.0
Vertical activity count, locomotor time 20.40.60.80.80.80.9-0.6
Light reinforcement 10.20.61.4-1.2-0.7-0.70.0
Light reinforcement 21.62.43.31.21.81.6-1.6
Bone: marrow area4.910.614.2-3.8-3.7-3.22.1
Bone: maximum diameter9.217.122.0-4.4-4.7-4.33.0
Bone: maximum force2.34.15.6-2.2-2.4-1.91.5
Bone: maximum moment2.13.75.2-2.3-2.2-1.61.5
Mean time between licks in bursts1.22.93.71.71.71.9-1.5
Mean num. licks in bursts1.62.53.1-1.5-1.8-1.71.2
Cd content in liver2.32.64.41.41.72.1-1.1
Co content in liver1.41.62.20.91.11.4-1.5
Cu content in liver1.21.42.50.61.41.6-0.9
Fe content in liver1.51.82.21.51.41.4-1.0
K content in liver0.20.20.50.70.60.00.2
Mg content in liver0.40.40.60.80.80.5-0.6
Mn content in liver1.01.11.60.91.31.2-0.6
Na content in liver1.31.42.51.61.10.7-1.1
Rb content in liver0.20.20.4-0.3-0.6-0.6-0.0
Se content in liver24.328.835.85.56.05.9-3.8
Sr content in liver0.60.51.30.10.50.7-1.2
Zn content in liver6.37.09.73.13.12.7-1.4
Bone: minimum diameter5.810.614.3-3.4-3.8-3.22.6
Time in familiar zone, hab. session 10.00.00.1-0.3-0.2-0.00.2
Time in novel zone, hab. session 10.50.50.60.70.80.7-0.7
Total zone transitions, hab. session 10.10.10.2-0.5-0.3-0.30.4
Total locomotion distance, hab. session 10.30.40.50.70.70.4-0.7
Locomotion velocity, hab. session 10.50.61.01.00.80.4-0.8
Time in familiar zone, hab. session 20.50.50.70.60.70.8-0.6
Time in novel zone, hab. session 20.10.10.1-0.4-0.2-0.20.1
Total zone transitions, hab. session 20.40.60.90.70.70.9-0.6
Total locomotion distance, hab. session 20.70.91.01.00.90.9-1.0
Locomotion velocity, hab. session 20.50.70.91.00.90.8-0.8
Novel to familiar place preference ratio1.51.72.7-1.7-1.1-1.31.1
Novelty place preference1.61.83.1-1.7-1.1-1.31.0
Time in novel zone, NPP test1.21.32.3-1.5-0.8-1.11.0
Total zone transitions, NPP test0.50.71.31.10.90.8-0.2
Total locomotion distance, NPP test1.11.52.31.51.31.0-1.0
Locomotion velocity, NPP test0.81.22.11.51.10.8-0.9
Intraocular pressure0.30.40.7-0.8-0.7-0.5-0.3
Delta distance traveled before/after self-admin2.32.54.2-2.1-1.6-1.50.8
Delta ambulatory time before/after self-admin2.32.84.4-2.1-1.8-1.70.7
Parametrial fat weight0.40.91.71.31.00.9-0.2
Pavlov. Cond. lever latency0.30.31.0-1.0-0.40.0-0.4
Pavlov. Cond. magazine entry latency1.21.53.01.71.21.2-0.5
Pavlov. Cond. change in total contacts2.02.23.61.91.41.5-0.9
Pavlov. Cond. index score0.60.72.21.50.70.5-0.0
Pavlov. Cond. latency score0.40.61.81.40.50.20.2
Pavlov. Cond. lever contacts0.50.61.61.30.80.40.1
Pavlov. Cond. magazine entry number0.70.91.6-1.3-0.9-1.10.1
Pavlov. Cond. intertrial magazine entries0.60.71.2-0.7-1.0-1.10.1
Pavlov. Cond. lever-magazine prob. diff.0.91.22.91.71.00.8-0.2
Pavlov. Cond. response bias1.51.82.81.71.41.5-0.6
Pavlov. Cond. lever latency0.20.20.8-0.2-0.1-0.30.9
Pavlov. Cond. magazine entry latency1.41.72.41.51.21.1-1.3
Pavlov. Cond. change in total contacts0.20.30.60.80.20.0-0.7
Pavlov. Cond. index score0.20.30.70.60.20.2-0.8
Pavlov. Cond. latency score0.10.20.60.4-0.00.0-0.8
Pavlov. Cond. lever contacts0.20.30.90.30.10.3-0.9
Pavlov. Cond. magazine entry number1.72.13.3-1.8-1.3-1.21.4
Pavlov. Cond. intertrial magazine entries1.11.72.4-1.1-1.4-1.51.1
Pavlov. Cond. lever-magazine prob. diff.0.30.40.80.70.30.3-0.9
Pavlov. Cond. response bias0.81.01.41.10.80.9-1.2
Time in closed arm before self-admin0.00.00.10.20.3-0.0-0.1
Time in closed arm after self-admin1.51.62.61.61.41.0-1.0
Time in open arm before self-admin0.10.10.3-0.30.30.6-0.3
Time in open arm after self-admin0.70.71.2-1.1-0.9-0.80.5
Bone: periosteal estimation5.812.216.2-3.8-4.0-3.52.5
Bone: periosteal perimeter5.59.411.5-3.1-3.4-3.12.6
Bone: post-yield work1.82.73.9-1.7-2.0-1.41.3
Progressive ratio test 1 active lever presses2.63.25.8-2.4-1.9-1.51.1
Progressive ratio test 1 breakpoint2.32.85.1-2.2-1.7-1.41.0
Progressive ratio test 1 inactive lever presses1.92.76.1-2.5-1.2-0.91.5
Progressive ratio test 2 active lever presses6.67.714.2-3.8-2.7-2.22.1
Progressive ratio test 2 breakpoint7.08.014.8-3.8-2.8-2.32.1
Progressive ratio test 2 inactive lever presses2.13.57.5-2.7-1.5-1.31.6
Incentive Sensitization - Responses4.15.711.1-3.3-2.1-1.72.2
Incentive Sensitization - Breakpoint4.76.111.5-3.4-2.2-1.82.2
Sum of active levers in priming session hrs 5-60.80.71.10.71.10.9-0.7
Progressive ratio0.00.10.20.5-0.1-0.3-0.1
Food seeking constrained by brief footshock1.51.92.4-1.4-1.4-1.11.6
Seeking ratio, punishment vs. effort0.00.10.1-0.4-0.10.20.3
Retroperitoneal fat weight0.00.10.3-0.3-0.5-0.4-0.3
Reaction time number correct1.32.53.2-1.4-1.6-1.81.6
Reaction time mean minus median0.10.20.3-0.6-0.10.40.4
Reaction time mean minus median AUC0.10.20.4-0.10.30.7-0.2
Reaction time num false alarms0.70.91.8-0.5-1.1-1.30.6
Reaction time num false alarms AUC0.30.40.8-0.2-0.8-0.90.4
Reaction time trials correct on left1.32.53.2-1.4-1.6-1.81.6
Reaction time trials on left1.32.43.1-1.4-1.6-1.81.5
Reaction time mean2.33.74.91.71.92.2-1.8
Reaction time mean AUC2.84.56.11.92.22.5-1.8
Median of all reaction times3.65.15.82.12.32.4-2.2
Reaction time omissions0.30.40.80.60.30.5-0.9
Reaction time false alarm rate0.00.00.10.2-0.2-0.2-0.2
Reaction time premature initiation rate1.21.72.4-1.4-1.2-1.11.5
Reaction time premature initiations3.05.36.0-2.3-2.3-2.22.4
Std. dev. reaction times0.51.02.10.50.91.4-0.9
Reaction time trials completed1.32.43.1-1.4-1.6-1.81.5
Reaction time trials AUC1.02.02.6-1.1-1.4-1.61.4
Run reversals in cocaine runway, females0.10.10.1-0.20.30.30.2
Run reversals in cocaine runway, males0.20.20.30.50.40.50.1
Latency to leave start box in cocaine runway0.80.91.6-0.6-1.2-1.2-0.6
Latency to leave start box in cocaine runway, F0.30.30.6-0.3-0.6-0.8-0.5
Latency to leave start box in cocaine runway, M0.80.71.3-0.8-1.1-1.1-0.0
Std. dev. time between licks in bursts2.94.04.81.92.12.2-1.8
Total sessions with >9 infusions0.30.31.0-1.00.10.40.2
Short access day 1 total inactive lever presses0.91.23.3-1.8-0.9-0.80.1
Short access day 10 total inactive lever presses0.10.20.40.60.50.2-0.1
Short access day 1 total infusions0.20.20.7-0.80.20.4-0.1
Short access day 10 total infusions0.20.30.5-0.70.40.60.4
Short access total infusions1.11.43.7-1.9-0.7-0.51.1
Short access day 1 locomotion0.20.30.4-0.60.50.6-0.2
Short access day 10 total locomotion0.10.10.20.40.40.20.0
Short access total locomotion0.40.50.90.00.90.9-0.5
One hour access (0.3 mA shock)8.39.616.8-4.1-3.0-2.42.6
Compulsive drug intake0.10.20.3-0.3-0.6-0.50.1
One hour access (shock baseline)3.25.09.0-3.0-1.9-1.52.2
Social response proportion0.20.20.4-0.6-0.3-0.50.5
Social responses1.11.42.9-1.7-0.8-0.61.3
Social time0.60.81.40.81.11.2-0.1
Soleus weight0.82.23.3-1.7-1.8-1.50.6
Bone: stiffness2.84.65.7-1.9-2.4-2.12.1
Tibialis anterior weight0.93.05.4-0.7-1.6-2.31.9
Time to tail flick, vehicle, before self-admin0.40.40.70.20.70.6-0.8
Time to tail flick, vehicle, after self-admin0.30.51.1-0.2-0.3-0.81.1
Time to tail flick, test, before self-admin1.01.01.7-0.8-1.3-1.30.1
Time to tail flick, test, after self-admin1.01.11.41.21.20.8-1.0
Delta time to tail flick, vehicle, before/after SA2.82.73.8-0.9-1.6-2.01.9
Delta time to tail flick, test, before/after SA0.60.61.20.71.10.90.0
Tibia length0.10.20.3-0.4-0.6-0.30.4
Ambulatory time before self-admin0.60.91.51.20.90.7-0.8
Ambulatory time after self-admin0.60.71.1-0.9-0.8-1.1-0.3
Bone: tissue strength0.40.41.00.30.71.0-0.0
Total heroin consumption1.61.83.0-1.5-1.0-1.11.7
Bone: trabecular number4.87.912.2-3.5-3.0-2.61.9
Bone: trabecular spacing2.02.64.92.21.71.5-0.6
Bone: trabecular thickness4.35.47.7-2.8-2.6-2.21.5
Bone: trabecular tissue density1.72.43.4-1.7-1.7-1.80.6
Water consumed over 24 hours0.10.20.30.4-0.1-0.60.4
Number of responses in last shaping day0.40.41.2-1.10.00.6-0.4