LOC102553702

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC102553702 0.78 0.05 0.0e+00 0.62 0.62 0.64 0.63 5.2e-87 3.6e-88 8.2e-92 9.3e-90
2 Liver isoform ratio XR_005499663.2 0.06 0.04 1.8e-08 0.06 0.06 0.06 0.06 5.0e-07 1.5e-07 2.7e-07 4.8e-07
3 Liver intron excision ratio chr1_243922142_243923645 0.07 0.05 9.5e-06 0.03 0.04 0.03 0.04 6.7e-04 6.0e-05 1.4e-04 7.0e-05
4 Liver intron excision ratio chr1_243922570_243922758 0.02 0.01 4.9e-03 0.01 0.01 0.01 0.01 1.3e-02 1.1e-02 7.3e-03 3.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density7.613.919.24.4-4.1-3.7-2.5
Area under the delay curve0.20.30.9-0.50.40.21.0
BMI with tail0.10.40.91.0-0.6-0.4-0.2
BMI without tail0.00.10.3-0.0-0.00.20.6
Body weight0.93.85.12.3-2.2-1.7-1.5
Weight adjusted by age0.10.20.50.5-0.4-0.70.0
Bone surface3.46.89.83.1-3.0-2.5-1.4
Bone volume5.110.113.63.6-3.7-3.2-1.9
Breakpoint value in progressive ratio session0.30.50.70.7-0.5-0.7-0.8
Number of licking bursts0.82.43.0-1.71.71.41.3
Context. condit. distance diff. score2.12.54.31.3-1.9-2.1-0.8
Locomotion velocity, session 13.13.54.2-1.61.92.01.9
Locomotion distance, session 10.10.20.3-0.30.50.50.0
Locomotion velocity, session 21.11.31.5-1.11.11.21.2
Locomotion distance, session 20.30.40.6-0.80.70.60.1
Locomotion velocity, session 30.10.10.20.1-0.5-0.4-0.0
Locomotion distance, session 30.40.50.80.2-0.9-0.9-0.5
Stereotopy head waving bouts, day 30.10.20.50.00.20.40.7
Stereotopy head waving duration, day 30.10.10.20.20.20.20.4
Locomotion velocity, session 71.21.32.10.5-1.0-1.4-1.5
Locomotion distance, session 71.21.52.60.7-1.1-1.4-1.6
Stereotopy head waving bouts, day 70.50.61.5-0.50.50.71.2
Stereotopy head waving duration, day 70.30.41.1-0.10.30.71.0
Locomotion velocity, session 80.20.30.30.5-0.5-0.6-0.6
Locomotion distance, session 80.50.81.60.4-1.0-1.3-0.6
Degree of sensitization distance0.10.10.5-0.00.2-0.2-0.7
Degree of sensitization stereotypy0.20.20.7-0.00.10.40.8
Conditioned locomotion0.70.81.30.8-1.0-1.1-0.3
Cocaine response after cond. corrected0.10.20.60.0-0.2-0.10.8
Cocaine response after cond. not corrected0.10.10.20.1-0.4-0.40.1
Cocaine response before conditioning0.20.30.6-0.40.40.3-0.8
Saline control response0.20.30.9-0.1-0.5-0.9-0.2
Bone: connectivity density3.96.39.93.2-2.6-2.3-1.7
Bone: cortical apparent density1.32.03.0-1.31.41.21.7
Bone: cortical area3.04.97.12.0-2.7-2.3-1.8
Bone: cortical porosity0.00.00.1-0.10.30.1-0.3
Bone: cortical porosity0.00.00.20.1-0.0-0.1-0.4
Bone: cortical thickness0.30.50.90.3-1.0-0.8-0.6
Bone: cortical thickness0.10.10.3-0.50.30.10.5
Bone: cortical tissue density1.42.13.2-1.31.41.31.8
Condit. Reinf. active minus inactive responses1.21.32.0-1.41.00.91.3
Condit. Reinf. active-inactive response ratio1.71.92.1-1.41.31.51.3
Condit. Reinf. active responses0.20.20.5-0.5-0.2-0.30.7
Condit. Reinf. inactive responses1.21.52.70.9-1.5-1.6-0.4
Incentive salience index mean1.01.32.8-1.71.00.81.0
Condit. Reinf. lever presses1.11.63.2-1.81.31.10.7
Condit. Reinf. active minus inactive responses0.30.41.10.1-0.8-1.00.0
Condit. Reinf. active-inactive response ratio0.10.20.3-0.3-0.3-0.50.6
Condit. Reinf. active responses1.21.72.91.0-1.7-1.7-0.4
Condit. Reinf. inactive responses0.71.11.81.0-1.4-1.1-0.5
Condit. Reinf. lever presses0.10.10.2-0.0-0.4-0.40.5
Condit. Reinf. lever reinforcers received0.71.01.80.7-1.3-1.4-0.2
Conditioned reinforcement - actives0.52.04.52.1-1.1-0.8-1.2
Conditioned reinforcement - inactives0.61.52.91.7-1.1-1.0-1.0
Conditioned locomotion1.01.53.51.9-0.9-0.5-1.1
Patch foraging indifference point 0 sec0.10.30.90.20.51.0-0.2
Patch foraging indifference point AUC0.51.21.4-1.11.21.20.8
Delay disc. indifference point, 0s delay0.30.41.20.1-0.6-1.1-0.1
Delay disc. indifference point, 16s delay0.10.10.20.4-0.4-0.30.3
Delay disc. indifference point, 2s delay0.10.10.4-0.00.1-0.10.6
Delay disc. indifference point, 24s delay1.21.93.1-1.61.11.01.7
Delay disc. indifference point, 4s delay0.10.10.2-0.0-0.1-0.30.4
Delay disc. indifference point, 8s delay1.32.22.5-1.41.51.41.6
Indifference point function ln k0.61.72.31.3-1.5-1.4-0.8
Indifference point function log k0.61.72.31.3-1.5-1.4-0.8
Patch foraging total patch changes 0 sec0.10.30.80.30.40.9-0.2
Patch foraging total patch changes 12 sec1.31.82.8-1.11.61.70.7
Patch foraging total patch changes 18 sec0.20.40.6-0.30.70.80.7
Patch foraging total patch changes 24 sec0.10.30.5-0.50.60.70.1
Patch foraging total patch changes 6 sec1.22.04.0-1.11.62.00.4
Patch foraging time to switch 0 sec0.20.91.2-1.11.10.90.8
Patch foraging water rate 0 sec0.20.61.10.8-0.7-0.6-1.0
Patch foraging water rate 12 sec0.20.71.50.9-0.7-0.3-1.2
Patch foraging water rate 18 sec0.71.53.11.1-1.0-0.8-1.8
Patch foraging water rate 24 sec1.62.33.61.2-1.5-1.4-1.9
Patch foraging water rate 6 sec0.00.00.10.3-0.3-0.00.0
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.40.10.00.3
Distance traveled before self-admin0.10.30.8-0.90.40.20.4
Distance traveled after self-admin0.20.30.50.7-0.5-0.70.2
Extensor digitorum longus weight0.41.73.00.3-1.4-1.7-1.3
Bone: elastic displacement2.02.53.3-1.31.81.71.5
Bone: elastic work0.70.91.4-0.61.21.01.0
Bone: endosteal estimation4.110.013.23.6-3.6-3.1-2.1
Bone: endosteal perimeter4.911.915.23.9-3.6-3.2-3.0
Epididymis fat weight0.73.44.52.1-2.1-2.1-0.7
Delta time in closed arm before/after self-admin1.11.01.7-0.91.21.30.4
Delta time in open arm before/after self-admin0.20.20.5-0.2-0.3-0.70.6
Diff in mean of infusions in LGA sessions0.30.50.60.8-0.7-0.7-0.8
Delay discount exponential model param0.30.40.90.5-0.5-0.3-1.0
Extinction: sum of active levers before priming0.10.10.40.1-0.3-0.2-0.7
Active lever presses in extinction session 61.71.73.31.1-1.3-1.8-0.8
Bone: final force1.22.02.71.4-1.6-1.3-1.2
Bone: final moment1.11.82.41.5-1.6-1.1-1.2
Food consumed during 24 hour testing period0.10.20.3-0.40.30.60.2
Glucose0.00.00.1-0.30.00.10.3
Heart weight0.30.51.3-0.10.41.20.6
Delay discount hyperbolic model param0.30.40.90.5-0.5-0.4-1.0
Intermittent access intake day 1-15 change0.52.65.32.3-1.3-0.7-1.8
Intermittent access intake escalation0.52.75.02.2-1.4-0.9-1.7
Intermittent access intake escalation 20.50.91.91.4-0.6-0.4-1.1
Intermitt. access day 1 inactive lever presses0.00.61.1-1.00.50.31.0
Intermitt. access day 15 inactive lever presses0.41.93.71.9-1.4-1.1-0.9
Intermitt. access escalation Index0.20.61.2-1.10.90.70.4
Intermittent access day 1 total infusions0.82.54.42.1-1.5-1.4-1.3
Intermittent access day 15 total infusions2.56.211.03.3-2.4-1.8-2.2
Intermittent access terminal intake (last 3 days)2.54.38.52.9-1.9-1.4-1.8
Intermittent access total infusions3.33.96.92.6-1.8-1.5-1.7
Intermittent access day 1 locomotion1.12.03.01.7-1.4-1.2-1.2
Intermittent access day 15 total locomotion1.03.97.82.8-1.9-1.4-1.5
Intermittent access total locomotion3.33.97.02.6-1.8-1.7-1.6
Intermittent access standard deviation0.31.72.91.7-1.4-0.9-1.2
Left kidney weight0.21.52.11.4-1.4-0.9-1.1
Right kidney weight0.00.30.60.7-0.50.0-0.8
Cocaine induced anxiety0.30.71.10.5-0.7-1.0-1.0
Post-drug Anxiety0.40.50.60.8-0.8-0.7-0.4
Baseline Anxiety0.10.20.40.6-0.6-0.20.4
Tail length0.20.91.70.8-1.3-1.2-0.2
Length with tail1.14.96.72.3-2.6-2.1-1.8
Length without tail1.89.510.83.1-3.3-3.0-2.9
Times rat made contact with spout0.10.20.5-0.0-0.3-0.7-0.0
Lifetime Intake3.23.97.52.7-1.8-1.5-1.7
Liver weight, left0.50.91.60.9-1.3-1.0-0.4
Liver weight, right1.62.74.12.0-1.8-1.5-1.2
Locomotor activity0.50.81.2-0.70.80.81.1
Locomotor testing distance0.61.52.1-0.91.41.41.0
Locomotor testing rearing0.00.10.30.1-0.3-0.4-0.5
Locomotion in novel chamber1.21.63.11.1-1.5-1.8-0.1
Locomotion in novel chamber post-restriction0.82.54.01.2-2.0-2.0-1.0
Fecal boli incidents, locomotor time 10.10.30.90.2-0.1-0.4-1.0
Change in fecal boli incidents, locomotor task0.30.30.5-0.60.50.7-0.1
Time >=10cm from walls, locomotor time 12.22.83.80.8-2.0-1.9-1.7
Bouts of movement, locomotor time 10.50.61.31.2-0.5-0.5-0.7
Total resting periods, locomotor time 10.80.91.71.3-0.6-0.7-1.0
Rest time, locomotor task time 10.10.20.30.50.50.3-0.4
Distance moved, locomotor task time 10.30.71.7-1.30.00.11.1
Vertical activity count, locomotor time 10.00.00.1-0.2-0.3-0.10.1
Time >=10cm from walls, locomotor time 20.10.20.3-0.3-0.3-0.5-0.5
Bouts of movement, locomotor time 20.31.12.4-0.91.51.20.0
Total resting periods, locomotor time 20.31.12.4-0.81.51.2-0.1
Rest time, locomotor task time 20.10.20.50.50.1-0.1-0.7
Distance moved, locomotor task time 20.40.51.1-0.9-0.2-0.21.0
Vertical activity count, locomotor time 20.20.60.8-0.80.80.90.6
Light reinforcement 10.10.61.41.2-0.7-0.7-0.0
Light reinforcement 21.12.43.3-1.21.81.61.6
Bone: marrow area4.310.714.33.8-3.7-3.2-2.1
Bone: maximum diameter8.517.122.04.4-4.7-4.3-3.0
Bone: maximum force2.14.15.62.2-2.4-1.9-1.5
Bone: maximum moment2.03.75.22.3-2.2-1.6-1.5
Mean time between licks in bursts0.52.93.7-1.71.71.91.5
Mean num. licks in bursts0.92.53.11.5-1.8-1.7-1.2
Cd content in liver2.32.64.4-1.41.72.11.1
Co content in liver1.41.62.2-1.01.11.41.5
Cu content in liver1.21.42.5-0.61.41.60.9
Fe content in liver1.51.82.2-1.51.41.41.0
K content in liver0.20.20.5-0.70.60.0-0.2
Mg content in liver0.40.40.6-0.80.80.50.6
Mn content in liver0.91.11.6-0.91.31.20.6
Na content in liver1.21.42.5-1.61.10.71.1
Rb content in liver0.20.20.40.3-0.6-0.60.0
Se content in liver24.428.835.8-5.56.05.93.8
Sr content in liver0.60.51.3-0.10.50.71.2
Zn content in liver6.07.09.7-3.13.12.71.4
Bone: minimum diameter5.510.614.33.4-3.8-3.2-2.6
Time in familiar zone, hab. session 10.00.00.10.3-0.2-0.0-0.2
Time in novel zone, hab. session 10.50.50.6-0.70.80.70.7
Total zone transitions, hab. session 10.10.10.20.5-0.3-0.3-0.4
Total locomotion distance, hab. session 10.30.40.5-0.70.70.40.7
Locomotion velocity, hab. session 10.50.61.0-1.00.80.40.8
Time in familiar zone, hab. session 20.40.50.7-0.60.70.80.6
Time in novel zone, hab. session 20.10.10.10.3-0.2-0.2-0.1
Total zone transitions, hab. session 20.40.60.9-0.70.70.90.6
Total locomotion distance, hab. session 20.70.91.0-1.00.90.91.0
Locomotion velocity, hab. session 20.50.70.9-1.00.90.80.8
Novel to familiar place preference ratio1.31.72.71.6-1.1-1.3-1.1
Novelty place preference1.41.83.01.7-1.1-1.3-1.0
Time in novel zone, NPP test1.11.32.31.5-0.8-1.1-1.0
Total zone transitions, NPP test0.50.71.2-1.10.90.80.2
Total locomotion distance, NPP test1.11.52.3-1.51.31.01.0
Locomotion velocity, NPP test0.81.22.1-1.41.10.80.9
Intraocular pressure0.20.40.70.8-0.7-0.50.3
Delta distance traveled before/after self-admin2.22.44.22.1-1.6-1.5-0.8
Delta ambulatory time before/after self-admin1.62.84.42.1-1.8-1.7-0.7
Parametrial fat weight0.40.91.7-1.31.00.90.2
Pavlov. Cond. lever latency0.30.31.01.0-0.40.00.4
Pavlov. Cond. magazine entry latency1.21.53.0-1.71.21.20.5
Pavlov. Cond. change in total contacts2.02.23.6-1.91.41.50.9
Pavlov. Cond. index score0.60.72.2-1.50.70.50.0
Pavlov. Cond. latency score0.40.61.8-1.40.50.2-0.2
Pavlov. Cond. lever contacts0.50.61.6-1.30.80.4-0.1
Pavlov. Cond. magazine entry number0.70.91.61.3-0.9-1.1-0.1
Pavlov. Cond. intertrial magazine entries0.60.71.20.7-1.0-1.1-0.1
Pavlov. Cond. lever-magazine prob. diff.0.91.22.9-1.71.00.80.2
Pavlov. Cond. response bias1.41.82.8-1.71.41.50.6
Pavlov. Cond. lever latency0.20.20.80.2-0.1-0.3-0.9
Pavlov. Cond. magazine entry latency1.21.72.4-1.61.21.11.3
Pavlov. Cond. change in total contacts0.10.30.6-0.80.20.00.7
Pavlov. Cond. index score0.20.30.7-0.60.20.20.8
Pavlov. Cond. latency score0.10.20.6-0.4-0.00.00.8
Pavlov. Cond. lever contacts0.20.30.9-0.30.10.30.9
Pavlov. Cond. magazine entry number1.62.13.31.8-1.3-1.2-1.4
Pavlov. Cond. intertrial magazine entries0.81.72.41.1-1.4-1.5-1.1
Pavlov. Cond. lever-magazine prob. diff.0.20.40.8-0.70.30.30.9
Pavlov. Cond. response bias0.71.01.4-1.10.80.91.2
Time in closed arm before self-admin0.00.00.1-0.20.3-0.00.1
Time in closed arm after self-admin1.41.62.6-1.61.41.01.0
Time in open arm before self-admin0.10.10.30.30.30.60.3
Time in open arm after self-admin0.70.71.21.1-0.9-0.8-0.5
Bone: periosteal estimation5.112.216.23.8-4.0-3.5-2.5
Bone: periosteal perimeter4.89.411.53.1-3.4-3.1-2.6
Bone: post-yield work1.52.73.91.7-2.0-1.4-1.3
Progressive ratio test 1 active lever presses1.83.25.82.4-1.9-1.5-1.1
Progressive ratio test 1 breakpoint1.62.85.02.2-1.7-1.4-1.0
Progressive ratio test 1 inactive lever presses1.02.76.12.5-1.2-0.9-1.5
Progressive ratio test 2 active lever presses5.47.714.13.8-2.7-2.2-2.1
Progressive ratio test 2 breakpoint6.38.014.73.8-2.8-2.3-2.1
Progressive ratio test 2 inactive lever presses1.13.57.42.7-1.5-1.3-1.6
Incentive Sensitization - Responses2.15.711.03.3-2.1-1.7-2.2
Incentive Sensitization - Breakpoint2.76.111.53.4-2.2-1.8-2.2
Sum of active levers in priming session hrs 5-60.80.71.1-0.71.10.90.7
Progressive ratio0.00.10.2-0.5-0.1-0.30.1
Food seeking constrained by brief footshock1.51.92.41.4-1.4-1.1-1.5
Seeking ratio, punishment vs. effort0.00.10.10.4-0.10.2-0.3
Retroperitoneal fat weight0.00.10.30.3-0.5-0.40.3
Reaction time number correct0.72.53.21.4-1.6-1.8-1.6
Reaction time mean minus median0.00.20.30.6-0.10.4-0.4
Reaction time mean minus median AUC0.00.20.40.10.30.70.2
Reaction time num false alarms0.60.91.80.5-1.1-1.3-0.6
Reaction time num false alarms AUC0.20.40.80.2-0.8-0.9-0.4
Reaction time trials correct on left0.72.53.21.4-1.6-1.8-1.6
Reaction time trials on left0.72.43.11.4-1.6-1.8-1.5
Reaction time mean1.73.74.9-1.71.92.21.8
Reaction time mean AUC1.94.56.1-1.92.22.51.8
Median of all reaction times3.25.15.8-2.12.32.42.2
Reaction time omissions0.20.40.8-0.60.30.50.9
Reaction time false alarm rate0.00.00.1-0.2-0.2-0.20.2
Reaction time premature initiation rate1.11.72.41.4-1.2-1.1-1.5
Reaction time premature initiations1.75.36.02.3-2.3-2.2-2.4
Std. dev. reaction times0.31.02.1-0.50.91.40.9
Reaction time trials completed0.72.43.11.4-1.6-1.8-1.5
Reaction time trials AUC0.62.02.61.1-1.4-1.6-1.4
Run reversals in cocaine runway, females0.10.10.10.20.30.3-0.2
Run reversals in cocaine runway, males0.20.20.3-0.50.40.5-0.1
Latency to leave start box in cocaine runway0.70.91.60.6-1.2-1.20.6
Latency to leave start box in cocaine runway, F0.30.30.60.3-0.6-0.80.5
Latency to leave start box in cocaine runway, M0.80.81.30.8-1.1-1.10.0
Std. dev. time between licks in bursts2.14.04.8-1.92.12.21.8
Total sessions with >9 infusions0.20.31.01.00.10.4-0.2
Short access day 1 total inactive lever presses0.61.23.31.8-0.9-0.8-0.1
Short access day 10 total inactive lever presses0.00.20.4-0.60.50.20.1
Short access day 1 total infusions0.10.20.60.80.20.40.1
Short access day 10 total infusions0.20.30.50.70.40.6-0.4
Short access total infusions1.01.43.61.9-0.7-0.5-1.1
Short access day 1 locomotion0.20.30.40.60.50.60.2
Short access day 10 total locomotion0.00.10.2-0.40.40.2-0.0
Short access total locomotion0.30.50.9-0.10.90.90.5
One hour access (0.3 mA shock)8.19.616.84.1-3.0-2.4-2.6
Compulsive drug intake0.10.20.30.3-0.6-0.5-0.1
One hour access (shock baseline)1.95.09.03.0-1.9-1.5-2.2
Social response proportion0.20.20.40.6-0.3-0.5-0.5
Social responses1.11.42.91.7-0.8-0.6-1.3
Social time0.50.81.4-0.81.11.20.1
Soleus weight0.82.23.31.8-1.8-1.5-0.6
Bone: stiffness2.54.65.71.9-2.4-2.1-2.1
Tibialis anterior weight0.93.05.40.7-1.6-2.3-1.9
Time to tail flick, vehicle, before self-admin0.30.40.7-0.20.70.60.8
Time to tail flick, vehicle, after self-admin0.20.51.10.2-0.3-0.8-1.1
Time to tail flick, test, before self-admin0.91.01.70.8-1.3-1.3-0.1
Time to tail flick, test, after self-admin1.01.11.4-1.21.20.81.0
Delta time to tail flick, vehicle, before/after SA2.52.73.80.9-1.6-2.0-1.9
Delta time to tail flick, test, before/after SA0.50.61.2-0.71.10.9-0.0
Tibia length0.10.20.30.4-0.6-0.3-0.4
Ambulatory time before self-admin0.30.91.5-1.20.90.70.8
Ambulatory time after self-admin0.40.71.10.9-0.8-1.10.3
Bone: tissue strength0.40.41.0-0.30.71.00.0
Total heroin consumption1.61.83.01.5-1.0-1.1-1.7
Bone: trabecular number4.27.912.23.5-3.0-2.6-1.9
Bone: trabecular spacing1.82.64.9-2.21.71.50.6
Bone: trabecular thickness3.95.47.72.8-2.6-2.2-1.5
Bone: trabecular tissue density1.42.43.41.7-1.7-1.8-0.6
Water consumed over 24 hours0.10.20.3-0.4-0.1-0.6-0.4
Number of responses in last shaping day0.30.41.21.10.00.60.4