LOC102553505

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver intron excision ratio chr20_2954360_2955331 0.05 0.04 2.1e-03 0.01 0.02 0.01 0.01 1.7e-02 1.2e-03 3.6e-02 2.8e-02
2 Liver intron excision ratio chr20_2953921_2955331 0.48 0.22 8.2e-07 0.04 0.06 0.05 0.04 1.1e-05 7.5e-07 1.9e-06 8.1e-06
3 Liver intron excision ratio chr20_2958693_2958849 0.22 0.12 7.7e-09 0.01 0.03 0.02 0.02 5.9e-02 1.2e-04 2.8e-03 2.8e-03
4 Liver gene expression LOC102553505 0.27 0.12 0.0e+00 0.21 0.26 0.26 0.26 6.3e-23 7.0e-29 4.5e-29 3.3e-28

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.42.63.0-1.6-1.51.7-1.6
Area under the delay curve0.50.82.30.30.1-1.01.5
BMI with tail0.62.25.0-1.2-1.5-0.12.2
BMI without tail0.63.09.8-0.4-0.6-1.33.1
Body weight3.214.128.22.62.0-4.25.3
Weight adjusted by age0.82.53.51.51.1-1.71.9
Bone surface0.30.71.20.80.8-1.10.3
Bone volume0.00.00.1-0.2-0.2-0.10.1
Breakpoint value in progressive ratio session0.20.30.70.00.50.8-0.6
Number of licking bursts0.30.81.41.21.2-0.7-0.1
Context. condit. distance diff. score2.73.39.01.31.50.2-3.0
Locomotion velocity, session 10.20.30.40.60.6-0.2-0.6
Locomotion distance, session 11.01.31.7-1.3-1.21.3-0.4
Locomotion velocity, session 20.10.10.20.50.4-0.2-0.1
Locomotion distance, session 20.30.40.9-0.5-0.50.9-0.6
Locomotion velocity, session 30.40.50.8-0.9-0.90.50.1
Locomotion distance, session 30.91.12.0-0.8-0.61.1-1.4
Stereotopy head waving bouts, day 32.42.93.21.81.7-1.81.5
Stereotopy head waving duration, day 31.41.72.01.31.2-1.31.4
Locomotion velocity, session 72.22.46.6-0.7-0.61.5-2.6
Locomotion distance, session 72.43.16.1-1.3-1.21.8-2.5
Stereotopy head waving bouts, day 71.71.94.40.90.8-1.32.1
Stereotopy head waving duration, day 71.62.04.51.00.8-1.42.1
Locomotion velocity, session 84.04.98.42.92.8-1.8-0.1
Locomotion distance, session 81.42.16.20.91.00.4-2.5
Degree of sensitization distance0.40.40.80.90.7-0.5-0.5
Degree of sensitization stereotypy0.60.61.90.30.2-0.71.4
Conditioned locomotion0.70.80.90.90.9-0.81.0
Cocaine response after cond. corrected0.30.40.6-0.5-0.40.8-0.8
Cocaine response after cond. not corrected0.40.61.01.00.9-0.70.2
Cocaine response before conditioning5.06.08.22.42.1-2.92.4
Saline control response0.81.21.8-1.1-1.2-0.01.4
Bone: connectivity density1.32.14.7-0.9-0.71.5-2.2
Bone: cortical apparent density1.01.62.4-1.5-1.61.20.4
Bone: cortical area0.81.22.70.70.5-1.21.6
Bone: cortical porosity0.30.40.90.20.1-0.71.0
Bone: cortical porosity0.80.91.50.90.7-1.20.9
Bone: cortical thickness1.62.64.6-1.6-1.80.42.2
Bone: cortical thickness2.22.64.4-1.9-2.11.20.9
Bone: cortical tissue density0.91.42.1-1.4-1.41.20.3
Condit. Reinf. active minus inactive responses0.50.51.3-0.3-0.20.8-1.2
Condit. Reinf. active-inactive response ratio0.20.20.3-0.5-0.60.60.1
Condit. Reinf. active responses0.91.22.7-0.6-0.51.2-1.7
Condit. Reinf. inactive responses2.12.74.1-1.5-1.31.7-2.0
Incentive salience index mean0.81.02.70.70.80.3-1.7
Condit. Reinf. lever presses1.52.25.11.31.4-0.0-2.3
Condit. Reinf. active minus inactive responses0.81.21.91.00.7-1.41.2
Condit. Reinf. active-inactive response ratio1.82.93.71.71.4-1.91.8
Condit. Reinf. active responses0.00.10.10.30.1-0.3-0.3
Condit. Reinf. inactive responses1.01.53.1-0.9-0.81.1-1.8
Condit. Reinf. lever presses0.20.31.1-0.1-0.10.4-1.0
Condit. Reinf. lever reinforcers received0.10.10.20.30.3-0.3-0.4
Conditioned reinforcement - actives0.20.82.2-0.4-0.2-0.81.5
Conditioned reinforcement - inactives0.30.82.2-0.6-0.5-0.61.5
Conditioned locomotion0.30.51.40.40.4-1.20.4
Patch foraging indifference point 0 sec0.61.62.7-1.6-1.41.00.9
Patch foraging indifference point AUC0.41.02.10.70.3-1.51.2
Delay disc. indifference point, 0s delay0.70.80.90.80.9-0.90.9
Delay disc. indifference point, 16s delay1.01.52.2-1.3-1.5-0.11.4
Delay disc. indifference point, 2s delay1.82.04.01.11.2-1.32.0
Delay disc. indifference point, 24s delay0.20.30.6-0.4-0.5-0.10.8
Delay disc. indifference point, 4s delay2.12.33.51.31.3-1.61.9
Delay disc. indifference point, 8s delay0.10.10.3-0.0-0.1-0.30.6
Indifference point function ln k0.10.30.40.60.6-0.1-0.5
Indifference point function log k0.10.30.40.60.6-0.1-0.5
Patch foraging total patch changes 0 sec0.71.93.1-1.8-1.60.91.1
Patch foraging total patch changes 12 sec1.11.52.3-1.4-1.50.41.1
Patch foraging total patch changes 18 sec1.63.76.4-2.5-2.51.50.2
Patch foraging total patch changes 24 sec1.44.97.7-2.8-2.62.1-0.4
Patch foraging total patch changes 6 sec1.72.94.5-2.1-2.11.21.0
Patch foraging time to switch 0 sec0.41.62.3-1.5-1.21.5-0.4
Patch foraging water rate 0 sec0.10.41.30.1-0.4-0.51.1
Patch foraging water rate 12 sec0.20.71.5-1.0-1.20.7-0.2
Patch foraging water rate 18 sec0.10.20.30.50.3-0.60.3
Patch foraging water rate 24 sec0.50.71.90.1-0.5-0.71.4
Patch foraging water rate 6 sec0.40.61.7-0.8-1.30.30.0
Seeking ratio, delayed vs. immediate footshock0.10.20.30.50.50.00.6
Distance traveled before self-admin0.61.22.01.31.4-1.10.0
Distance traveled after self-admin1.01.82.71.31.6-1.21.3
Extensor digitorum longus weight0.31.11.61.11.2-1.3-0.1
Bone: elastic displacement0.40.50.7-0.8-0.80.50.7
Bone: elastic work0.81.13.8-0.0-0.1-0.72.0
Bone: endosteal estimation5.814.218.84.34.1-4.21.7
Bone: endosteal perimeter3.38.112.53.53.5-2.8-0.2
Epididymis fat weight4.824.538.5-6.2-6.24.12.1
Delta time in closed arm before/after self-admin0.20.20.60.0-0.2-0.30.8
Delta time in open arm before/after self-admin0.10.10.20.30.4-0.40.1
Diff in mean of infusions in LGA sessions1.52.74.5-1.4-0.71.9-2.1
Delay discount exponential model param0.60.92.4-0.3-0.11.0-1.5
Extinction: sum of active levers before priming0.10.20.5-0.10.30.7-0.4
Active lever presses in extinction session 60.80.81.3-1.2-0.90.9-0.2
Bone: final force1.93.110.4-0.1-0.4-1.33.2
Bone: final moment1.72.78.80.0-0.3-1.33.0
Food consumed during 24 hour testing period0.71.42.01.41.2-1.30.6
Glucose3.75.99.83.13.0-1.6-1.4
Heart weight1.21.95.30.50.4-1.32.3
Delay discount hyperbolic model param0.71.02.7-0.3-0.21.0-1.7
Intermittent access intake day 1-15 change0.00.10.30.1-0.10.0-0.6
Intermittent access intake escalation0.00.10.2-0.3-0.50.2-0.3
Intermittent access intake escalation 20.40.71.31.10.7-0.8-0.6
Intermitt. access day 1 inactive lever presses0.22.03.51.61.2-1.90.7
Intermitt. access day 15 inactive lever presses0.21.12.20.80.3-1.51.2
Intermitt. access escalation Index0.41.13.7-0.20.20.9-1.9
Intermittent access day 1 total infusions0.20.61.5-1.2-0.20.90.0
Intermittent access day 15 total infusions0.10.30.8-0.9-0.20.60.1
Intermittent access terminal intake (last 3 days)0.20.40.8-0.9-0.40.30.6
Intermittent access total infusions0.20.20.6-0.8-0.10.20.4
Intermittent access day 1 locomotion0.10.20.4-0.30.60.4-0.3
Intermittent access day 15 total locomotion0.41.53.20.91.0-1.81.0
Intermittent access total locomotion0.70.91.70.60.9-1.30.9
Intermittent access standard deviation0.20.93.0-0.4-0.5-0.51.7
Left kidney weight1.08.321.21.40.9-3.04.6
Right kidney weight1.49.822.41.81.6-3.44.7
Cocaine induced anxiety0.20.61.00.90.8-0.4-1.0
Post-drug Anxiety0.20.20.70.3-0.00.4-0.8
Baseline Anxiety1.11.82.8-1.4-1.51.7-0.2
Tail length3.518.925.44.54.2-5.03.5
Length with tail6.328.136.45.55.1-6.04.5
Length without tail2.714.417.33.63.2-4.14.2
Times rat made contact with spout2.83.24.4-2.1-1.91.9-1.0
Lifetime Intake0.20.30.7-0.60.2-0.10.8
Liver weight, left3.56.110.23.03.2-2.20.5
Liver weight, right5.49.412.63.43.5-3.21.8
Locomotor activity3.45.38.73.02.4-2.50.6
Locomotor testing distance0.61.52.81.71.1-1.40.1
Locomotor testing rearing0.41.52.51.61.3-1.30.4
Locomotion in novel chamber0.40.51.10.30.2-1.00.9
Locomotion in novel chamber post-restriction0.20.51.6-0.2-0.5-0.11.3
Fecal boli incidents, locomotor time 10.20.51.1-0.60.21.1-0.6
Change in fecal boli incidents, locomotor task0.70.81.60.80.4-0.91.3
Time >=10cm from walls, locomotor time 11.41.82.41.51.5-1.20.9
Bouts of movement, locomotor time 10.40.51.60.50.40.2-1.3
Total resting periods, locomotor time 10.40.40.70.70.8-0.1-0.8
Rest time, locomotor task time 10.71.01.81.31.3-0.80.2
Distance moved, locomotor task time 10.20.51.3-0.5-0.6-0.31.1
Vertical activity count, locomotor time 10.00.30.9-0.5-0.9-0.00.5
Time >=10cm from walls, locomotor time 20.20.61.11.01.0-0.40.3
Bouts of movement, locomotor time 20.51.63.31.81.3-1.10.2
Total resting periods, locomotor time 20.52.24.52.11.6-1.3-0.1
Rest time, locomotor task time 22.03.35.72.42.3-1.2-0.8
Distance moved, locomotor task time 21.21.62.1-1.4-1.40.41.5
Vertical activity count, locomotor time 20.30.71.7-0.9-1.30.50.3
Light reinforcement 10.10.50.8-0.9-0.80.70.5
Light reinforcement 20.30.71.01.00.9-0.70.8
Bone: marrow area5.613.818.34.34.1-4.11.7
Bone: maximum diameter2.44.96.92.62.5-2.40.6
Bone: maximum force1.42.88.60.40.1-1.62.9
Bone: maximum moment1.42.67.20.60.3-1.72.7
Mean time between licks in bursts0.63.65.82.42.4-1.5-0.7
Mean num. licks in bursts1.02.74.3-2.1-2.01.6-0.4
Cd content in liver0.70.81.5-1.0-0.81.2-0.2
Co content in liver1.01.11.7-1.2-1.30.41.1
Cu content in liver3.64.35.2-2.3-2.12.1-1.7
Fe content in liver0.50.61.2-0.9-1.10.20.7
K content in liver0.40.41.0-0.7-1.00.3-0.4
Mg content in liver0.50.51.20.60.6-0.4-1.1
Mn content in liver2.62.93.92.01.9-1.1-1.7
Na content in liver0.70.81.7-1.1-1.30.20.5
Rb content in liver0.60.71.9-0.5-0.60.5-1.4
Se content in liver2.53.04.92.22.1-1.5-0.6
Sr content in liver1.00.91.21.00.9-1.10.7
Zn content in liver0.10.10.10.40.3-0.4-0.3
Bone: minimum diameter3.05.78.62.92.8-2.50.6
Time in familiar zone, hab. session 14.75.27.6-2.4-2.12.8-1.7
Time in novel zone, hab. session 13.13.54.92.11.8-2.21.2
Total zone transitions, hab. session 10.40.61.0-0.6-0.40.8-1.0
Total locomotion distance, hab. session 10.40.61.1-0.7-0.61.1-0.7
Locomotion velocity, hab. session 10.40.50.9-0.8-0.71.0-0.3
Time in familiar zone, hab. session 20.70.71.1-1.0-0.81.0-0.4
Time in novel zone, hab. session 20.20.30.50.50.3-0.70.5
Total zone transitions, hab. session 20.20.20.3-0.5-0.50.50.2
Total locomotion distance, hab. session 20.91.22.1-1.0-0.91.5-0.9
Locomotion velocity, hab. session 20.81.12.0-0.9-0.81.4-0.9
Novel to familiar place preference ratio0.10.10.2-0.5-0.50.10.2
Novelty place preference0.10.10.2-0.2-0.3-0.10.4
Time in novel zone, NPP test0.10.10.3-0.1-0.1-0.30.5
Total zone transitions, NPP test0.60.81.7-0.5-0.41.1-1.3
Total locomotion distance, NPP test1.11.62.6-1.2-1.01.6-1.1
Locomotion velocity, NPP test1.72.43.8-1.5-1.22.0-1.5
Intraocular pressure0.61.01.9-0.7-0.31.2-1.4
Delta distance traveled before/after self-admin1.01.13.70.20.4-0.71.9
Delta ambulatory time before/after self-admin0.61.02.80.50.6-0.71.7
Parametrial fat weight0.30.71.70.10.1-1.11.3
Pavlov. Cond. lever latency2.32.94.7-2.2-2.01.21.1
Pavlov. Cond. magazine entry latency1.72.23.11.81.7-0.6-1.5
Pavlov. Cond. change in total contacts2.02.23.51.91.7-1.60.3
Pavlov. Cond. index score2.53.25.02.22.1-1.0-1.5
Pavlov. Cond. latency score2.73.45.62.42.2-1.3-1.2
Pavlov. Cond. lever contacts2.42.95.02.22.1-1.3-0.8
Pavlov. Cond. magazine entry number1.31.73.3-1.3-1.30.21.8
Pavlov. Cond. intertrial magazine entries2.63.14.6-2.1-2.01.9-0.7
Pavlov. Cond. lever-magazine prob. diff.2.42.94.32.12.0-0.8-1.7
Pavlov. Cond. response bias2.12.63.61.91.8-0.6-1.8
Pavlov. Cond. lever latency0.40.60.80.70.7-0.90.7
Pavlov. Cond. magazine entry latency0.40.50.60.80.7-0.80.7
Pavlov. Cond. change in total contacts0.10.10.3-0.1-0.3-0.20.6
Pavlov. Cond. index score0.00.00.00.20.2-0.0-0.0
Pavlov. Cond. latency score0.00.00.00.10.0-0.00.2
Pavlov. Cond. lever contacts0.20.30.5-0.6-0.60.7-0.4
Pavlov. Cond. magazine entry number0.10.20.4-0.4-0.30.4-0.6
Pavlov. Cond. intertrial magazine entries0.51.12.30.91.1-0.2-1.5
Pavlov. Cond. lever-magazine prob. diff.0.00.00.00.20.20.1-0.0
Pavlov. Cond. response bias0.00.10.20.10.10.2-0.5
Time in closed arm before self-admin0.00.00.00.1-0.1-0.0-0.2
Time in closed arm after self-admin0.50.61.1-0.6-1.0-0.40.9
Time in open arm before self-admin0.20.20.50.40.70.1-0.5
Time in open arm after self-admin0.50.51.30.71.20.0-0.5
Bone: periosteal estimation3.48.010.53.02.8-3.22.1
Bone: periosteal perimeter2.14.25.72.42.2-2.30.9
Bone: post-yield work1.83.15.12.22.2-1.5-0.7
Progressive ratio test 1 active lever presses0.20.30.7-0.8-0.10.40.7
Progressive ratio test 1 breakpoint0.20.30.7-0.8-0.10.40.7
Progressive ratio test 1 inactive lever presses0.41.22.3-1.5-1.30.70.4
Progressive ratio test 2 active lever presses0.40.61.1-1.1-0.60.8-0.2
Progressive ratio test 2 breakpoint0.50.61.2-1.1-0.70.8-0.2
Progressive ratio test 2 inactive lever presses0.20.71.20.20.7-0.91.1
Incentive Sensitization - Responses0.20.40.8-0.5-0.30.9-0.8
Incentive Sensitization - Breakpoint0.20.50.7-0.6-0.40.8-0.9
Sum of active levers in priming session hrs 5-60.40.41.20.00.31.1-0.5
Progressive ratio0.92.79.00.20.4-1.33.0
Food seeking constrained by brief footshock0.00.10.1-0.3-0.20.2-0.2
Seeking ratio, punishment vs. effort1.02.26.9-0.3-0.51.3-2.6
Retroperitoneal fat weight0.10.41.50.10.1-0.51.2
Reaction time number correct0.51.73.7-1.5-1.90.80.3
Reaction time mean minus median0.85.18.72.92.9-1.4-1.2
Reaction time mean minus median AUC0.53.15.22.32.2-1.0-1.2
Reaction time num false alarms0.30.50.60.70.5-0.70.8
Reaction time num false alarms AUC0.30.81.30.80.6-0.91.1
Reaction time trials correct on left0.51.73.7-1.5-1.90.80.3
Reaction time trials on left0.41.53.3-1.4-1.80.70.4
Reaction time mean2.14.67.52.72.7-1.3-1.3
Reaction time mean AUC1.94.67.82.72.8-1.2-1.3
Median of all reaction times1.82.84.52.12.1-1.1-1.0
Reaction time omissions2.23.56.62.32.6-1.2-0.8
Reaction time false alarm rate1.41.92.81.61.7-1.20.8
Reaction time premature initiation rate0.71.03.10.20.1-1.01.8
Reaction time premature initiations0.41.33.9-0.6-0.9-0.52.0
Std. dev. reaction times1.86.110.93.23.3-1.7-0.7
Reaction time trials completed0.41.53.3-1.4-1.80.70.4
Reaction time trials AUC0.41.53.4-1.4-1.90.80.3
Run reversals in cocaine runway, females0.50.61.4-1.2-0.60.70.3
Run reversals in cocaine runway, males3.63.95.62.32.4-2.10.6
Latency to leave start box in cocaine runway0.00.00.10.1-0.2-0.30.1
Latency to leave start box in cocaine runway, F0.10.10.40.1-0.40.0-0.6
Latency to leave start box in cocaine runway, M0.70.61.60.20.2-0.91.3
Std. dev. time between licks in bursts2.24.16.72.62.4-2.00.0
Total sessions with >9 infusions0.20.30.9-0.40.0-0.30.9
Short access day 1 total inactive lever presses1.93.96.61.81.7-2.61.6
Short access day 10 total inactive lever presses0.00.10.30.10.1-0.3-0.6
Short access day 1 total infusions0.00.10.1-0.40.20.20.4
Short access day 10 total infusions0.20.30.6-0.7-0.1-0.10.7
Short access total infusions0.30.41.2-0.60.1-0.21.1
Short access day 1 locomotion0.30.51.1-0.6-0.10.8-1.0
Short access day 10 total locomotion0.31.42.31.41.0-1.50.6
Short access total locomotion0.20.30.60.40.6-0.80.2
One hour access (0.3 mA shock)0.60.71.2-0.80.11.1-1.1
Compulsive drug intake0.81.23.80.40.70.6-1.9
One hour access (shock baseline)0.10.20.4-0.6-0.10.40.6
Social response proportion0.50.60.90.91.0-0.60.5
Social responses0.30.40.90.50.4-0.61.0
Social time2.94.67.42.72.6-2.0-0.0
Soleus weight3.410.114.63.83.8-3.30.8
Bone: stiffness0.20.41.0-0.4-0.6-0.21.0
Tibialis anterior weight0.41.52.9-1.7-1.70.60.3
Time to tail flick, vehicle, before self-admin0.30.41.40.10.10.3-1.2
Time to tail flick, vehicle, after self-admin0.30.61.00.81.0-0.3-0.9
Time to tail flick, test, before self-admin0.00.00.1-0.2-0.10.1-0.3
Time to tail flick, test, after self-admin0.50.51.60.40.30.4-1.3
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.4-0.30.3-0.2
Delta time to tail flick, test, before/after SA0.60.71.0-0.7-0.81.0-0.8
Tibia length3.28.810.83.33.0-3.32.3
Ambulatory time before self-admin0.20.50.70.80.8-0.80.1
Ambulatory time after self-admin1.21.92.61.21.6-1.11.5
Bone: tissue strength1.81.84.80.30.2-1.52.2
Total heroin consumption0.30.30.90.61.0-0.10.1
Bone: trabecular number1.73.33.9-1.9-1.72.0-1.6
Bone: trabecular spacing3.24.76.61.91.7-2.62.3
Bone: trabecular thickness1.62.23.1-1.4-1.31.8-1.5
Bone: trabecular tissue density0.61.03.20.40.2-0.71.8
Water consumed over 24 hours0.10.10.20.40.3-0.50.2
Number of responses in last shaping day0.91.12.00.80.9-1.11.4