LOC102551736

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA alternative polyA XR_005491773.2 0.06 0.04 9.0e-03 0.01 0.02 0.04 0.02 9.1e-02 4.7e-02 5.5e-03 1.9e-02
2 Brain alternative polyA XR_005491773.2 0.03 0.02 7.8e-03 0.01 0.02 0.01 0.01 4.9e-02 5.8e-03 1.7e-02 4.4e-02
3 Brain alternative polyA XR_005491774.2 0.03 0.02 8.8e-03 0.01 0.02 0.01 0.01 5.4e-02 7.2e-03 2.2e-02 4.8e-02
4 Adipose gene expression LOC102551736 0.05 0.04 1.6e-03 0.01 0.01 0.01 0.01 8.9e-03 1.5e-02 1.4e-02 1.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.64.49.8-3.1-1.41.41.9
Area under the delay curve0.80.92.11.50.4-0.4-1.1
BMI with tail1.55.17.7-1.8-2.22.22.8
BMI without tail0.51.52.6-1.61.0-1.0-1.1
Body weight2.812.245.0-6.7-1.21.31.0
Weight adjusted by age0.60.91.6-1.30.9-0.9-0.7
Bone surface1.32.47.1-2.7-1.01.00.8
Bone volume2.34.05.5-2.4-2.02.01.6
Breakpoint value in progressive ratio session0.40.51.2-0.20.7-0.6-1.1
Number of licking bursts0.61.01.9-1.41.0-1.00.0
Context. condit. distance diff. score1.11.31.8-1.2-1.31.3-0.5
Locomotion velocity, session 10.70.71.2-0.31.1-1.1-0.7
Locomotion distance, session 11.21.53.00.11.7-1.70.2
Locomotion velocity, session 21.51.83.0-1.11.7-1.70.0
Locomotion distance, session 23.14.37.6-1.12.7-2.7-1.0
Locomotion velocity, session 30.40.50.90.2-0.90.90.5
Locomotion distance, session 30.30.30.50.30.5-0.5-0.7
Stereotopy head waving bouts, day 31.51.83.3-1.81.1-1.1-1.2
Stereotopy head waving duration, day 30.20.20.9-0.1-0.10.1-1.0
Locomotion velocity, session 70.90.92.40.8-0.60.6-1.5
Locomotion distance, session 71.01.23.90.9-0.30.3-2.0
Stereotopy head waving bouts, day 72.32.63.30.81.8-1.8-1.7
Stereotopy head waving duration, day 70.91.11.40.71.2-1.2-0.9
Locomotion velocity, session 80.91.11.6-0.41.3-1.3-1.0
Locomotion distance, session 81.01.54.0-2.00.7-0.7-1.0
Degree of sensitization distance0.30.31.10.4-0.00.0-1.1
Degree of sensitization stereotypy0.70.71.21.10.9-0.9-0.5
Conditioned locomotion0.20.20.30.50.4-0.4-0.5
Cocaine response after cond. corrected0.81.01.51.1-0.80.81.2
Cocaine response after cond. not corrected1.11.31.81.2-1.01.01.3
Cocaine response before conditioning0.10.10.20.3-0.40.5-0.3
Saline control response3.14.15.3-1.22.2-2.2-2.3
Bone: connectivity density1.72.710.5-3.2-0.40.4-0.0
Bone: cortical apparent density0.50.71.50.2-0.80.81.2
Bone: cortical area0.60.81.7-1.3-0.80.80.5
Bone: cortical porosity0.80.81.50.21.2-1.2-0.4
Bone: cortical porosity0.70.71.10.41.0-1.1-0.8
Bone: cortical thickness0.50.81.1-1.1-0.80.80.9
Bone: cortical thickness0.60.71.21.00.6-0.6-1.1
Bone: cortical tissue density0.50.71.50.3-0.80.81.2
Condit. Reinf. active minus inactive responses0.80.91.0-0.8-1.01.00.9
Condit. Reinf. active-inactive response ratio1.61.72.8-0.1-1.71.71.1
Condit. Reinf. active responses0.30.41.0-0.6-0.20.21.0
Condit. Reinf. inactive responses0.30.40.80.30.9-0.90.1
Incentive salience index mean0.20.20.4-0.1-0.50.50.7
Condit. Reinf. lever presses0.20.30.91.0-0.10.10.4
Condit. Reinf. active minus inactive responses0.91.22.20.21.1-1.1-1.5
Condit. Reinf. active-inactive response ratio1.41.62.40.51.4-1.4-1.5
Condit. Reinf. active responses0.71.01.7-0.31.0-1.0-1.3
Condit. Reinf. inactive responses0.10.10.5-0.70.2-0.2-0.1
Condit. Reinf. lever presses0.10.10.10.2-0.30.4-0.3
Condit. Reinf. lever reinforcers received0.60.91.4-0.31.0-1.0-1.2
Conditioned reinforcement - actives0.91.54.4-2.10.9-0.9-0.2
Conditioned reinforcement - inactives0.30.40.9-0.90.2-0.20.7
Conditioned locomotion0.10.20.3-0.50.4-0.40.1
Patch foraging indifference point 0 sec0.61.01.3-1.0-1.11.20.8
Patch foraging indifference point AUC0.00.00.1-0.30.1-0.10.2
Delay disc. indifference point, 0s delay0.10.10.30.1-0.20.2-0.5
Delay disc. indifference point, 16s delay0.30.30.80.9-0.40.4-0.2
Delay disc. indifference point, 2s delay1.11.23.11.80.4-0.4-1.2
Delay disc. indifference point, 24s delay0.30.31.01.0-0.00.0-0.6
Delay disc. indifference point, 4s delay0.60.62.31.5-0.00.0-0.2
Delay disc. indifference point, 8s delay0.40.51.51.20.3-0.3-0.6
Indifference point function ln k0.20.41.5-1.20.3-0.30.2
Indifference point function log k0.20.41.5-1.20.3-0.30.2
Patch foraging total patch changes 0 sec0.50.91.3-0.9-1.11.10.5
Patch foraging total patch changes 12 sec1.21.62.4-0.7-1.51.51.0
Patch foraging total patch changes 18 sec0.50.71.20.0-1.11.10.8
Patch foraging total patch changes 24 sec0.10.10.3-0.0-0.50.50.0
Patch foraging total patch changes 6 sec0.10.10.30.1-0.50.5-0.2
Patch foraging time to switch 0 sec0.71.34.12.0-0.80.8-0.1
Patch foraging water rate 0 sec0.61.35.4-2.30.0-0.0-0.1
Patch foraging water rate 12 sec0.51.23.5-1.90.6-0.5-0.7
Patch foraging water rate 18 sec0.71.02.10.11.0-1.0-1.4
Patch foraging water rate 24 sec1.82.53.4-1.91.7-1.7-0.9
Patch foraging water rate 6 sec0.71.02.3-1.5-0.90.9-0.3
Seeking ratio, delayed vs. immediate footshock0.30.31.21.10.1-0.10.3
Distance traveled before self-admin1.01.31.60.9-1.21.21.3
Distance traveled after self-admin0.10.10.20.5-0.0-0.0-0.4
Extensor digitorum longus weight0.72.67.6-2.8-1.11.2-0.1
Bone: elastic displacement0.91.12.0-0.51.4-1.40.2
Bone: elastic work1.11.43.3-1.81.1-1.10.3
Bone: endosteal estimation0.61.42.6-1.61.0-1.0-0.9
Bone: endosteal perimeter0.40.83.3-1.80.0-0.0-0.3
Epididymis fat weight1.44.77.5-1.1-2.72.71.6
Delta time in closed arm before/after self-admin0.10.10.3-0.5-0.20.2-0.2
Delta time in open arm before/after self-admin1.31.34.62.10.4-0.5-0.4
Diff in mean of infusions in LGA sessions0.50.61.41.2-0.70.7-0.2
Delay discount exponential model param1.01.13.0-1.7-0.40.41.0
Extinction: sum of active levers before priming0.70.81.7-0.2-0.80.81.3
Active lever presses in extinction session 60.70.71.0-0.9-1.01.00.2
Bone: final force0.20.40.5-0.70.7-0.7-0.4
Bone: final moment0.20.30.4-0.60.6-0.6-0.1
Food consumed during 24 hour testing period0.81.11.61.01.3-1.30.0
Glucose0.40.61.10.0-0.80.81.1
Heart weight0.71.02.6-1.60.8-0.80.5
Delay discount hyperbolic model param1.01.13.0-1.7-0.30.31.1
Intermittent access intake day 1-15 change0.30.71.9-1.40.4-0.4-0.8
Intermittent access intake escalation0.20.51.7-1.30.2-0.2-0.3
Intermittent access intake escalation 20.10.10.3-0.5-0.20.2-0.0
Intermitt. access day 1 inactive lever presses0.10.51.4-1.20.00.00.7
Intermitt. access day 15 inactive lever presses0.51.01.71.3-1.01.00.6
Intermitt. access escalation Index0.10.10.30.6-0.10.10.2
Intermittent access day 1 total infusions1.11.82.70.61.7-1.6-1.1
Intermittent access day 15 total infusions0.91.41.9-0.71.4-1.4-1.1
Intermittent access terminal intake (last 3 days)0.40.50.80.10.9-0.9-0.7
Intermittent access total infusions0.60.81.30.31.2-1.2-0.5
Intermittent access day 1 locomotion0.30.40.60.50.8-0.8-0.1
Intermittent access day 15 total locomotion1.11.92.61.01.6-1.6-1.2
Intermittent access total locomotion0.91.11.80.91.3-1.3-0.1
Intermittent access standard deviation0.10.20.5-0.7-0.40.40.2
Left kidney weight1.88.629.9-5.5-1.31.30.9
Right kidney weight2.19.631.8-5.6-1.41.51.6
Cocaine induced anxiety0.20.30.90.9-0.10.1-0.6
Post-drug Anxiety0.91.03.31.8-0.60.6-0.1
Baseline Anxiety0.70.81.10.7-0.90.91.0
Tail length3.312.821.3-4.63.0-2.9-3.5
Length with tail3.214.048.7-7.01.3-1.2-2.1
Length without tail2.99.428.1-5.3-1.91.91.6
Times rat made contact with spout0.80.91.7-0.51.3-1.3-0.5
Lifetime Intake0.50.61.10.31.0-1.0-0.2
Liver weight, left1.01.76.4-2.5-0.40.4-0.3
Liver weight, right0.91.56.0-2.40.1-0.10.3
Locomotor activity0.50.82.0-1.40.3-0.3-1.1
Locomotor testing distance0.20.30.8-0.9-0.50.50.2
Locomotor testing rearing0.10.10.20.1-0.40.4-0.4
Locomotion in novel chamber5.67.213.0-0.33.6-3.6-1.6
Locomotion in novel chamber post-restriction3.04.88.5-1.32.9-2.9-0.8
Fecal boli incidents, locomotor time 10.60.93.4-1.8-0.10.1-0.4
Change in fecal boli incidents, locomotor task0.60.62.01.4-0.00.00.5
Time >=10cm from walls, locomotor time 10.20.20.60.40.2-0.10.8
Bouts of movement, locomotor time 10.00.00.1-0.10.1-0.1-0.4
Total resting periods, locomotor time 10.00.00.00.1-0.00.00.0
Rest time, locomotor task time 10.40.40.90.20.9-0.90.0
Distance moved, locomotor task time 10.10.10.2-0.1-0.40.40.1
Vertical activity count, locomotor time 10.20.40.5-0.4-0.70.70.6
Time >=10cm from walls, locomotor time 20.10.10.2-0.2-0.20.2-0.4
Bouts of movement, locomotor time 20.91.55.7-2.4-0.20.2-0.3
Total resting periods, locomotor time 20.81.55.3-2.3-0.50.50.3
Rest time, locomotor task time 20.20.30.70.90.3-0.20.5
Distance moved, locomotor task time 20.20.20.5-0.70.3-0.3-0.5
Vertical activity count, locomotor time 20.40.62.1-1.4-0.10.10.5
Light reinforcement 10.30.61.61.3-0.30.30.9
Light reinforcement 20.71.13.00.2-0.80.81.7
Bone: marrow area0.61.32.3-1.51.1-1.1-0.9
Bone: maximum diameter0.61.03.9-2.0-0.30.30.1
Bone: maximum force0.10.20.4-0.60.3-0.3-0.3
Bone: maximum moment0.10.20.4-0.60.3-0.3-0.0
Mean time between licks in bursts0.10.20.7-0.10.4-0.4-0.8
Mean num. licks in bursts0.20.30.80.90.1-0.1-0.5
Cd content in liver0.80.91.6-0.41.2-1.2-0.6
Co content in liver1.01.11.70.91.3-1.3-0.5
Cu content in liver0.70.91.6-0.5-1.31.20.3
Fe content in liver4.45.37.9-2.1-2.82.81.1
K content in liver0.10.10.10.10.3-0.30.2
Mg content in liver0.40.40.90.80.2-0.2-1.0
Mn content in liver0.40.40.6-0.60.7-0.7-0.4
Na content in liver0.10.10.2-0.40.2-0.20.4
Rb content in liver2.12.46.02.4-1.41.4-0.3
Se content in liver3.33.95.70.3-2.22.22.4
Sr content in liver1.31.12.3-1.50.9-0.9-0.6
Zn content in liver1.21.45.1-2.3-0.10.10.6
Bone: minimum diameter0.00.00.10.10.1-0.1-0.3
Time in familiar zone, hab. session 10.30.30.7-0.5-0.30.30.8
Time in novel zone, hab. session 10.30.30.6-0.6-0.20.2-0.8
Total zone transitions, hab. session 13.95.57.90.22.8-2.8-2.5
Total locomotion distance, hab. session 11.11.52.51.11.1-1.1-1.6
Locomotion velocity, hab. session 11.41.93.51.91.1-1.1-1.3
Time in familiar zone, hab. session 21.92.03.9-0.0-2.02.0-0.0
Time in novel zone, hab. session 20.90.91.70.41.3-1.30.1
Total zone transitions, hab. session 23.34.38.4-0.62.9-2.9-0.3
Total locomotion distance, hab. session 21.82.44.70.52.2-2.2-0.2
Locomotion velocity, hab. session 22.02.75.30.52.3-2.3-0.1
Novel to familiar place preference ratio0.10.20.2-0.10.5-0.50.4
Novelty place preference0.10.10.2-0.20.2-0.20.5
Time in novel zone, NPP test0.10.10.3-0.50.2-0.20.6
Total zone transitions, NPP test1.82.54.2-1.12.0-2.0-0.8
Total locomotion distance, NPP test0.91.32.20.61.5-1.5-0.6
Locomotion velocity, NPP test1.62.23.50.71.9-1.9-1.2
Intraocular pressure0.40.60.8-0.9-0.90.9-0.3
Delta distance traveled before/after self-admin2.02.13.4-0.21.6-1.6-1.8
Delta ambulatory time before/after self-admin0.81.01.90.11.0-1.0-1.4
Parametrial fat weight0.51.22.3-1.5-1.11.10.4
Pavlov. Cond. lever latency1.72.13.7-1.9-1.21.21.4
Pavlov. Cond. magazine entry latency2.02.63.50.11.9-1.9-1.8
Pavlov. Cond. change in total contacts0.60.61.31.00.2-0.2-1.2
Pavlov. Cond. index score1.51.92.81.11.4-1.4-1.7
Pavlov. Cond. latency score1.92.42.71.21.6-1.6-1.6
Pavlov. Cond. lever contacts2.12.54.82.21.1-1.1-1.6
Pavlov. Cond. magazine entry number1.82.34.9-0.3-1.41.42.2
Pavlov. Cond. intertrial magazine entries0.30.41.30.1-0.40.41.2
Pavlov. Cond. lever-magazine prob. diff.1.21.52.21.11.1-1.1-1.5
Pavlov. Cond. response bias1.72.14.20.81.4-1.4-2.0
Pavlov. Cond. lever latency0.20.20.5-0.70.1-0.10.6
Pavlov. Cond. magazine entry latency0.00.00.1-0.1-0.10.1-0.3
Pavlov. Cond. change in total contacts0.10.20.5-0.40.1-0.1-0.7
Pavlov. Cond. index score0.10.20.50.10.3-0.3-0.7
Pavlov. Cond. latency score0.10.20.50.10.2-0.2-0.7
Pavlov. Cond. lever contacts0.20.30.91.0-0.30.3-0.4
Pavlov. Cond. magazine entry number0.10.10.3-0.10.2-0.20.5
Pavlov. Cond. intertrial magazine entries0.30.50.90.20.9-0.9-0.3
Pavlov. Cond. lever-magazine prob. diff.0.20.20.6-0.00.3-0.3-0.8
Pavlov. Cond. response bias0.30.41.01.0-0.30.3-0.6
Time in closed arm before self-admin0.91.23.4-1.80.8-0.8-0.1
Time in closed arm after self-admin2.12.36.4-2.51.0-1.0-0.8
Time in open arm before self-admin0.00.10.1-0.3-0.10.1-0.3
Time in open arm after self-admin1.01.14.32.10.0-0.0-0.3
Bone: periosteal estimation0.40.72.7-1.60.3-0.3-0.3
Bone: periosteal perimeter0.50.82.0-1.4-0.80.80.3
Bone: post-yield work0.20.20.30.3-0.60.50.6
Progressive ratio test 1 active lever presses0.91.21.5-0.91.2-1.2-0.9
Progressive ratio test 1 breakpoint0.91.11.5-0.91.2-1.2-1.0
Progressive ratio test 1 inactive lever presses0.30.40.5-0.70.7-0.7-0.2
Progressive ratio test 2 active lever presses1.92.33.6-1.41.9-1.9-0.1
Progressive ratio test 2 breakpoint1.92.13.4-1.41.8-1.8-0.1
Progressive ratio test 2 inactive lever presses1.01.62.1-1.51.4-1.3-0.6
Incentive Sensitization - Responses0.81.11.8-0.71.3-1.30.7
Incentive Sensitization - Breakpoint0.91.11.8-0.61.4-1.30.7
Sum of active levers in priming session hrs 5-60.30.31.2-1.10.1-0.1-0.0
Progressive ratio0.20.30.50.40.7-0.7-0.1
Food seeking constrained by brief footshock0.50.61.3-0.8-0.50.51.1
Seeking ratio, punishment vs. effort0.30.41.5-1.2-0.20.20.3
Retroperitoneal fat weight1.35.48.4-1.9-2.92.91.0
Reaction time number correct0.51.02.5-1.60.8-0.80.6
Reaction time mean minus median1.94.813.71.61.3-1.3-3.7
Reaction time mean minus median AUC2.05.114.01.91.1-1.1-3.7
Reaction time num false alarms0.20.30.4-0.20.7-0.70.5
Reaction time num false alarms AUC0.10.10.4-0.10.0-0.00.6
Reaction time trials correct on left0.51.02.5-1.60.8-0.80.6
Reaction time trials on left0.51.02.4-1.50.9-0.80.5
Reaction time mean1.52.47.82.8-0.20.2-1.3
Reaction time mean AUC1.52.47.22.7-0.30.3-1.5
Median of all reaction times1.52.27.52.7-0.80.8-0.2
Reaction time omissions0.60.92.31.10.1-0.1-1.5
Reaction time false alarm rate0.10.20.20.5-0.40.40.3
Reaction time premature initiation rate3.85.26.42.52.3-2.3-2.0
Reaction time premature initiations2.64.66.51.42.6-2.6-1.8
Std. dev. reaction times2.13.89.92.10.7-0.7-3.1
Reaction time trials completed0.51.02.4-1.50.9-0.80.5
Reaction time trials AUC0.50.92.3-1.50.7-0.60.7
Run reversals in cocaine runway, females0.40.41.51.20.0-0.00.0
Run reversals in cocaine runway, males0.50.51.4-1.2-0.50.50.5
Latency to leave start box in cocaine runway2.83.16.10.6-2.52.50.1
Latency to leave start box in cocaine runway, F2.93.36.5-0.4-2.52.60.3
Latency to leave start box in cocaine runway, M0.20.20.40.6-0.10.1-0.6
Std. dev. time between licks in bursts0.00.10.10.20.3-0.30.2
Total sessions with >9 infusions0.40.51.6-1.30.2-0.20.5
Short access day 1 total inactive lever presses0.70.93.0-1.70.4-0.4-0.4
Short access day 10 total inactive lever presses0.10.20.3-0.5-0.50.50.5
Short access day 1 total infusions0.30.41.0-1.00.4-0.40.5
Short access day 10 total infusions0.30.40.7-0.30.9-0.9-0.3
Short access total infusions0.20.20.40.00.6-0.60.4
Short access day 1 locomotion0.30.40.8-0.90.6-0.60.3
Short access day 10 total locomotion0.30.61.9-1.4-0.30.30.3
Short access total locomotion0.10.10.2-0.50.4-0.40.1
One hour access (0.3 mA shock)2.22.54.4-0.22.1-2.1-1.1
Compulsive drug intake0.91.03.92.00.2-0.2-0.3
One hour access (shock baseline)0.71.11.8-0.81.3-1.3-0.6
Social response proportion2.22.55.4-1.21.2-1.2-2.3
Social responses3.24.112.4-0.11.4-1.4-3.5
Social time0.60.92.01.4-0.50.4-1.0
Soleus weight0.51.43.5-1.9-0.90.9-0.4
Bone: stiffness0.00.10.10.10.2-0.2-0.3
Tibialis anterior weight0.93.212.0-3.50.2-0.2-0.8
Time to tail flick, vehicle, before self-admin0.40.40.80.4-0.90.90.1
Time to tail flick, vehicle, after self-admin0.10.20.3-0.4-0.50.50.1
Time to tail flick, test, before self-admin0.90.93.4-1.80.4-0.40.0
Time to tail flick, test, after self-admin0.80.80.90.9-0.90.90.8
Delta time to tail flick, vehicle, before/after SA0.70.61.10.0-0.80.81.1
Delta time to tail flick, test, before/after SA0.90.93.21.8-0.30.30.4
Tibia length0.72.07.7-2.8-0.10.1-0.5
Ambulatory time before self-admin0.40.60.90.6-0.80.80.9
Ambulatory time after self-admin0.10.10.20.4-0.00.0-0.5
Bone: tissue strength1.11.12.1-1.4-0.20.21.5
Total heroin consumption0.40.52.01.4-0.00.0-0.2
Bone: trabecular number1.42.47.3-2.7-0.91.00.7
Bone: trabecular spacing0.60.81.91.4-0.60.60.8
Bone: trabecular thickness2.22.75.2-2.3-1.21.21.7
Bone: trabecular tissue density0.60.91.30.7-1.11.10.7
Water consumed over 24 hours1.31.82.9-1.11.7-1.7-0.3
Number of responses in last shaping day0.20.20.2-0.5-0.40.40.4