LOC102550955

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC102550955 0.03 0.03 1.3e-03 0.01 0.01 0.01 0.01 1.9e-03 2.4e-03 6.2e-03 2.4e-03
2 BLA gene expression LOC102550955 0.06 0.07 9.9e-03 0.01 0.01 -0 -0 1.2e-01 1.1e-01 8.7e-01 5.9e-01
3 PL gene expression LOC102550955 0.03 0.03 2.5e-03 0.02 0.02 0.02 0.02 3.3e-03 3.5e-03 4.3e-03 3.2e-03
4 Adipose gene expression LOC102550955 0.03 0.03 4.0e-03 0.02 0.01 0.02 0.02 2.5e-03 1.1e-02 2.5e-03 3.3e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.12.02.21.5-1.5-1.41.3
Area under the delay curve0.10.10.1-0.30.30.2-0.3
BMI with tail0.41.41.6-1.31.21.2-1.1
BMI without tail0.00.00.1-0.1-0.0-0.10.3
Body weight0.62.73.1-1.81.71.6-1.6
Weight adjusted by age0.72.12.2-1.41.51.5-1.5
Bone surface0.50.91.11.1-1.0-1.00.7
Bone volume0.61.11.31.1-1.1-1.10.9
Breakpoint value in progressive ratio session0.10.10.2-0.50.30.3-0.3
Number of licking bursts0.00.00.00.10.0-0.10.1
Context. condit. distance diff. score1.01.21.51.0-1.0-1.11.2
Locomotion velocity, session 10.20.20.3-0.50.50.5-0.5
Locomotion distance, session 10.00.00.10.1-0.1-0.20.3
Locomotion velocity, session 20.00.00.00.1-0.2-0.10.2
Locomotion distance, session 20.00.00.10.1-0.1-0.10.2
Locomotion velocity, session 30.50.60.7-0.80.80.7-0.8
Locomotion distance, session 30.00.00.00.1-0.2-0.20.1
Stereotopy head waving bouts, day 30.70.80.9-1.00.90.9-0.8
Stereotopy head waving duration, day 32.32.93.0-1.71.71.7-1.6
Locomotion velocity, session 74.04.44.52.1-2.1-2.12.1
Locomotion distance, session 73.14.04.12.0-2.0-2.02.0
Stereotopy head waving bouts, day 71.51.71.8-1.31.31.4-1.4
Stereotopy head waving duration, day 72.12.63.0-1.51.61.6-1.7
Locomotion velocity, session 80.00.00.0-0.0-0.00.00.0
Locomotion distance, session 80.71.01.40.9-0.9-0.91.2
Degree of sensitization distance4.14.54.62.1-2.1-2.12.1
Degree of sensitization stereotypy1.11.21.3-1.01.11.1-1.1
Conditioned locomotion0.00.00.00.2-0.2-0.20.2
Cocaine response after cond. corrected0.20.30.3-0.60.60.6-0.5
Cocaine response after cond. not corrected0.10.20.2-0.40.40.4-0.4
Cocaine response before conditioning0.20.20.20.4-0.4-0.40.5
Saline control response0.10.10.10.3-0.4-0.30.2
Bone: connectivity density2.33.74.02.0-2.0-1.91.9
Bone: cortical apparent density0.10.10.10.3-0.3-0.30.3
Bone: cortical area0.00.00.00.0-0.00.0-0.1
Bone: cortical porosity1.21.31.3-1.11.11.1-1.1
Bone: cortical porosity0.70.70.7-0.90.90.9-0.8
Bone: cortical thickness0.00.00.00.0-0.0-0.0-0.1
Bone: cortical thickness0.00.00.10.0-0.0-0.00.3
Bone: cortical tissue density0.10.10.10.3-0.3-0.30.4
Condit. Reinf. active minus inactive responses0.50.50.6-0.70.80.7-0.6
Condit. Reinf. active-inactive response ratio2.22.42.6-1.51.61.6-1.4
Condit. Reinf. active responses0.00.00.0-0.10.10.00.0
Condit. Reinf. inactive responses2.32.93.01.7-1.7-1.71.7
Incentive salience index mean0.70.91.0-1.01.01.0-0.8
Condit. Reinf. lever presses0.20.40.5-0.70.70.7-0.4
Condit. Reinf. active minus inactive responses0.30.40.40.7-0.7-0.70.6
Condit. Reinf. active-inactive response ratio0.00.10.1-0.20.30.2-0.3
Condit. Reinf. active responses0.91.21.21.1-1.1-1.11.1
Condit. Reinf. inactive responses1.72.62.71.6-1.6-1.61.7
Condit. Reinf. lever presses0.20.20.30.5-0.4-0.50.6
Condit. Reinf. lever reinforcers received0.70.90.91.0-1.0-1.00.9
Conditioned reinforcement - actives0.41.71.71.3-1.3-1.31.3
Conditioned reinforcement - inactives1.74.64.82.2-2.1-2.12.1
Conditioned locomotion0.10.20.30.5-0.4-0.40.4
Patch foraging indifference point 0 sec1.02.73.21.8-1.8-1.71.2
Patch foraging indifference point AUC0.10.30.3-0.60.60.5-0.5
Delay disc. indifference point, 0s delay0.30.40.40.6-0.6-0.60.6
Delay disc. indifference point, 16s delay0.20.20.30.5-0.5-0.50.5
Delay disc. indifference point, 2s delay1.51.61.7-1.31.31.3-1.3
Delay disc. indifference point, 24s delay0.10.20.2-0.40.40.4-0.4
Delay disc. indifference point, 4s delay1.81.91.9-1.41.41.3-1.4
Delay disc. indifference point, 8s delay0.00.00.00.1-0.2-0.20.2
Indifference point function ln k0.00.00.00.1-0.10.00.2
Indifference point function log k0.00.00.00.1-0.10.00.2
Patch foraging total patch changes 0 sec0.71.92.31.5-1.5-1.51.0
Patch foraging total patch changes 12 sec0.50.70.90.9-0.9-0.90.5
Patch foraging total patch changes 18 sec0.81.92.21.3-1.4-1.51.2
Patch foraging total patch changes 24 sec0.00.00.1-0.10.0-0.0-0.3
Patch foraging total patch changes 6 sec0.10.20.30.5-0.6-0.60.3
Patch foraging time to switch 0 sec0.31.11.11.1-1.0-1.01.1
Patch foraging water rate 0 sec0.10.50.6-0.70.70.7-0.7
Patch foraging water rate 12 sec0.31.01.1-1.01.01.0-1.0
Patch foraging water rate 18 sec1.84.14.4-2.02.02.1-2.0
Patch foraging water rate 24 sec0.10.20.3-0.40.40.5-0.3
Patch foraging water rate 6 sec2.02.93.1-1.71.71.7-1.8
Seeking ratio, delayed vs. immediate footshock0.91.31.81.4-1.1-1.01.1
Distance traveled before self-admin0.40.91.0-0.81.01.0-1.0
Distance traveled after self-admin1.73.13.2-1.71.81.8-1.8
Extensor digitorum longus weight12.750.751.3-7.27.27.1-7.0
Bone: elastic displacement0.40.50.60.7-0.7-0.70.8
Bone: elastic work0.20.30.30.5-0.5-0.50.5
Bone: endosteal estimation0.10.10.2-0.30.30.4-0.5
Bone: endosteal perimeter0.00.10.2-0.20.20.3-0.4
Epididymis fat weight0.52.73.51.5-1.6-1.61.9
Delta time in closed arm before/after self-admin4.24.04.22.1-1.9-2.02.0
Delta time in open arm before/after self-admin0.10.10.1-0.20.20.3-0.3
Diff in mean of infusions in LGA sessions0.71.21.2-1.11.11.1-1.1
Delay discount exponential model param0.30.40.50.7-0.7-0.60.7
Extinction: sum of active levers before priming1.52.32.41.5-1.5-1.51.5
Active lever presses in extinction session 60.60.60.70.8-0.7-0.80.7
Bone: final force0.10.20.2-0.40.40.4-0.5
Bone: final moment0.10.10.2-0.30.30.4-0.4
Food consumed during 24 hour testing period0.20.40.50.6-0.6-0.60.7
Glucose0.00.00.00.10.0-0.0-0.1
Heart weight0.30.50.80.9-0.8-0.70.5
Delay discount hyperbolic model param0.40.50.60.8-0.7-0.70.7
Intermittent access intake day 1-15 change0.63.43.51.8-1.9-1.91.9
Intermittent access intake escalation0.73.63.61.9-1.9-1.91.9
Intermittent access intake escalation 21.01.61.61.3-1.3-1.31.3
Intermitt. access day 1 inactive lever presses0.00.00.00.2-0.1-0.10.1
Intermitt. access day 15 inactive lever presses0.00.10.10.3-0.2-0.20.2
Intermitt. access escalation Index0.00.10.1-0.30.20.2-0.2
Intermittent access day 1 total infusions0.00.00.00.20.00.0-0.0
Intermittent access day 15 total infusions1.12.63.01.7-1.6-1.61.6
Intermittent access terminal intake (last 3 days)0.81.51.81.3-1.2-1.21.2
Intermittent access total infusions1.21.51.71.3-1.2-1.21.2
Intermittent access day 1 locomotion0.00.00.00.1-0.1-0.10.1
Intermittent access day 15 total locomotion0.10.50.60.8-0.6-0.60.6
Intermittent access total locomotion0.10.10.20.4-0.3-0.30.3
Intermittent access standard deviation0.10.30.30.5-0.5-0.50.5
Left kidney weight0.00.20.2-0.40.40.4-0.4
Right kidney weight0.00.20.4-0.30.20.2-0.7
Cocaine induced anxiety0.00.00.0-0.00.10.0-0.1
Post-drug Anxiety0.80.91.01.0-1.0-1.01.0
Baseline Anxiety0.30.50.50.7-0.7-0.70.7
Tail length0.31.82.11.3-1.4-1.41.3
Length with tail0.10.20.4-0.40.40.4-0.6
Length without tail1.47.48.2-2.62.72.7-2.9
Times rat made contact with spout0.60.70.80.8-0.8-0.80.9
Lifetime Intake0.70.91.11.1-0.9-0.90.9
Liver weight, left1.72.93.5-1.91.71.7-1.5
Liver weight, right0.50.81.1-1.00.90.9-0.6
Locomotor activity1.52.42.6-1.41.61.6-1.6
Locomotor testing distance0.00.10.10.3-0.2-0.20.2
Locomotor testing rearing0.10.20.30.5-0.5-0.50.4
Locomotion in novel chamber0.40.60.70.8-0.8-0.70.8
Locomotion in novel chamber post-restriction0.31.01.2-0.81.01.1-1.0
Fecal boli incidents, locomotor time 10.61.61.8-1.31.21.2-1.2
Change in fecal boli incidents, locomotor task0.20.20.3-0.40.50.5-0.5
Time >=10cm from walls, locomotor time 10.81.01.10.9-1.0-1.11.0
Bouts of movement, locomotor time 14.35.55.9-2.42.32.3-2.3
Total resting periods, locomotor time 14.65.35.7-2.42.32.3-2.3
Rest time, locomotor task time 11.52.32.5-1.61.51.5-1.5
Distance moved, locomotor task time 11.23.43.61.8-1.8-1.91.8
Vertical activity count, locomotor time 10.21.21.41.2-1.1-1.11.1
Time >=10cm from walls, locomotor time 20.20.40.5-0.60.70.7-0.7
Bouts of movement, locomotor time 21.65.35.4-2.32.32.3-2.3
Total resting periods, locomotor time 21.45.65.7-2.42.42.4-2.4
Rest time, locomotor task time 20.61.11.2-1.01.01.1-1.0
Distance moved, locomotor task time 22.73.63.71.9-1.9-1.91.9
Vertical activity count, locomotor time 20.20.50.60.7-0.7-0.80.7
Light reinforcement 11.25.56.52.3-2.3-2.32.5
Light reinforcement 20.61.41.81.1-1.1-1.21.3
Bone: marrow area0.00.10.1-0.20.20.2-0.4
Bone: maximum diameter0.40.71.0-0.80.80.8-1.0
Bone: maximum force0.30.60.7-0.70.70.7-0.9
Bone: maximum moment0.20.40.5-0.50.60.6-0.7
Mean time between licks in bursts0.53.04.11.7-1.6-1.72.0
Mean num. licks in bursts0.10.30.30.5-0.6-0.50.6
Cd content in liver1.21.31.5-1.11.11.1-1.2
Co content in liver5.16.06.3-2.42.42.4-2.5
Cu content in liver0.40.50.6-0.70.70.7-0.8
Fe content in liver1.51.82.01.4-1.4-1.41.1
K content in liver1.11.11.11.1-1.1-1.11.0
Mg content in liver2.52.72.81.7-1.7-1.71.6
Mn content in liver2.42.72.91.7-1.7-1.71.6
Na content in liver1.01.11.3-1.01.01.0-1.1
Rb content in liver0.00.00.00.2-0.2-0.10.0
Se content in liver0.91.11.11.1-1.1-1.01.0
Sr content in liver0.00.00.00.1-0.1-0.2-0.0
Zn content in liver0.10.10.20.4-0.4-0.40.2
Bone: minimum diameter0.20.30.4-0.50.50.5-0.7
Time in familiar zone, hab. session 10.00.00.1-0.10.20.2-0.2
Time in novel zone, hab. session 11.11.21.3-1.11.11.1-1.1
Total zone transitions, hab. session 10.20.20.3-0.60.50.5-0.4
Total locomotion distance, hab. session 10.00.00.0-0.0-0.0-0.10.1
Locomotion velocity, hab. session 10.10.10.20.3-0.3-0.40.4
Time in familiar zone, hab. session 21.92.22.3-1.51.51.5-1.4
Time in novel zone, hab. session 20.70.70.80.9-0.9-0.90.8
Total zone transitions, hab. session 21.31.61.8-1.31.31.3-1.1
Total locomotion distance, hab. session 20.20.30.3-0.60.60.5-0.4
Locomotion velocity, hab. session 20.50.70.8-0.90.90.8-0.7
Novel to familiar place preference ratio1.31.71.71.3-1.3-1.31.3
Novelty place preference1.01.31.41.2-1.2-1.21.1
Time in novel zone, NPP test0.60.70.70.8-0.8-0.90.8
Total zone transitions, NPP test0.20.20.40.4-0.4-0.50.6
Total locomotion distance, NPP test2.63.63.91.9-1.9-1.92.0
Locomotion velocity, NPP test2.53.63.91.8-1.9-1.92.0
Intraocular pressure0.60.91.50.9-0.8-0.91.2
Delta distance traveled before/after self-admin3.03.33.6-1.91.81.8-1.8
Delta ambulatory time before/after self-admin2.03.43.5-1.91.81.8-1.9
Parametrial fat weight1.84.34.82.2-2.1-2.11.9
Pavlov. Cond. lever latency0.00.00.00.0-0.0-0.0-0.1
Pavlov. Cond. magazine entry latency0.00.00.00.1-0.2-0.20.2
Pavlov. Cond. change in total contacts1.11.21.4-1.21.11.1-0.9
Pavlov. Cond. index score0.10.10.1-0.30.30.3-0.2
Pavlov. Cond. latency score0.00.00.0-0.20.20.2-0.1
Pavlov. Cond. lever contacts0.00.00.10.1-0.1-0.10.2
Pavlov. Cond. magazine entry number0.40.50.50.7-0.7-0.70.6
Pavlov. Cond. intertrial magazine entries0.10.10.10.4-0.4-0.40.2
Pavlov. Cond. lever-magazine prob. diff.0.20.20.3-0.50.50.5-0.4
Pavlov. Cond. response bias0.10.20.2-0.50.40.5-0.3
Pavlov. Cond. lever latency0.30.40.50.7-0.7-0.70.6
Pavlov. Cond. magazine entry latency0.10.10.10.3-0.3-0.30.3
Pavlov. Cond. change in total contacts0.71.71.9-1.31.41.3-1.2
Pavlov. Cond. index score0.30.40.5-0.60.70.6-0.6
Pavlov. Cond. latency score0.20.30.3-0.50.60.5-0.4
Pavlov. Cond. lever contacts0.10.20.2-0.40.50.4-0.3
Pavlov. Cond. magazine entry number0.00.00.1-0.20.20.2-0.3
Pavlov. Cond. intertrial magazine entries3.67.88.22.8-2.8-2.82.9
Pavlov. Cond. lever-magazine prob. diff.0.30.50.6-0.70.80.7-0.6
Pavlov. Cond. response bias0.20.20.3-0.50.50.5-0.4
Time in closed arm before self-admin1.22.02.2-1.51.41.5-1.4
Time in closed arm after self-admin0.00.00.0-0.10.20.2-0.2
Time in open arm before self-admin0.00.00.00.10.0-0.10.0
Time in open arm after self-admin0.00.00.10.1-0.2-0.20.2
Bone: periosteal estimation0.00.10.2-0.20.30.3-0.5
Bone: periosteal perimeter0.00.10.2-0.20.20.2-0.4
Bone: post-yield work0.10.20.30.4-0.4-0.40.5
Progressive ratio test 1 active lever presses0.10.10.1-0.30.30.3-0.3
Progressive ratio test 1 breakpoint0.10.20.2-0.30.40.4-0.4
Progressive ratio test 1 inactive lever presses0.51.31.71.3-1.1-1.11.1
Progressive ratio test 2 active lever presses0.00.00.10.3-0.2-0.20.2
Progressive ratio test 2 breakpoint0.00.00.10.3-0.1-0.10.1
Progressive ratio test 2 inactive lever presses0.10.50.60.8-0.6-0.60.6
Incentive Sensitization - Responses0.10.30.40.6-0.6-0.60.6
Incentive Sensitization - Breakpoint0.20.50.50.7-0.7-0.70.7
Sum of active levers in priming session hrs 5-60.10.10.10.3-0.3-0.30.3
Progressive ratio0.00.00.0-0.10.10.1-0.1
Food seeking constrained by brief footshock2.02.52.6-1.51.61.6-1.6
Seeking ratio, punishment vs. effort0.41.01.1-0.91.01.0-1.0
Retroperitoneal fat weight0.10.30.50.6-0.7-0.70.3
Reaction time number correct0.30.91.1-1.01.01.0-0.8
Reaction time mean minus median0.00.20.2-0.30.40.4-0.5
Reaction time mean minus median AUC0.00.10.1-0.30.30.3-0.3
Reaction time num false alarms0.10.10.2-0.30.30.4-0.1
Reaction time num false alarms AUC0.00.10.1-0.20.30.30.0
Reaction time trials correct on left0.30.91.1-1.01.01.0-0.8
Reaction time trials on left0.20.70.8-0.90.90.9-0.6
Reaction time mean0.10.20.3-0.50.50.5-0.3
Reaction time mean AUC0.20.40.5-0.70.70.6-0.5
Median of all reaction times0.10.20.3-0.50.40.4-0.2
Reaction time omissions1.62.73.01.6-1.6-1.61.7
Reaction time false alarm rate0.10.10.20.4-0.3-0.20.4
Reaction time premature initiation rate1.62.52.8-1.61.61.7-1.3
Reaction time premature initiations1.23.54.2-2.02.02.0-1.5
Std. dev. reaction times0.00.10.2-0.40.40.4-0.3
Reaction time trials completed0.20.70.8-0.90.90.9-0.6
Reaction time trials AUC0.20.60.7-0.80.80.9-0.6
Run reversals in cocaine runway, females2.73.03.31.7-1.8-1.81.8
Run reversals in cocaine runway, males2.02.22.7-1.61.41.4-1.4
Latency to leave start box in cocaine runway0.30.40.5-0.50.70.7-0.7
Latency to leave start box in cocaine runway, F1.11.41.5-1.21.21.2-1.2
Latency to leave start box in cocaine runway, M0.10.10.30.6-0.3-0.30.3
Std. dev. time between licks in bursts1.02.02.81.3-1.3-1.31.7
Total sessions with >9 infusions0.00.10.1-0.20.20.2-0.2
Short access day 1 total inactive lever presses0.10.20.20.5-0.4-0.40.4
Short access day 10 total inactive lever presses0.00.30.40.6-0.5-0.50.5
Short access day 1 total infusions0.00.10.1-0.20.30.3-0.3
Short access day 10 total infusions0.20.40.4-0.50.60.6-0.6
Short access total infusions0.00.00.1-0.10.20.2-0.2
Short access day 1 locomotion0.61.01.1-0.91.01.0-1.0
Short access day 10 total locomotion0.00.00.00.0-0.1-0.10.1
Short access total locomotion0.10.10.1-0.40.40.4-0.4
One hour access (0.3 mA shock)0.70.80.90.9-0.9-0.90.9
Compulsive drug intake0.50.70.80.7-0.9-0.90.9
One hour access (shock baseline)0.00.00.00.10.00.0-0.0
Social response proportion0.10.20.3-0.40.40.4-0.5
Social responses0.91.21.41.1-1.2-1.20.9
Social time0.20.40.50.7-0.7-0.60.5
Soleus weight1.23.43.7-1.91.91.9-1.6
Bone: stiffness0.71.21.5-1.11.11.1-1.2
Tibialis anterior weight8.228.228.6-5.35.35.3-5.3
Time to tail flick, vehicle, before self-admin0.91.11.41.2-1.0-1.01.0
Time to tail flick, vehicle, after self-admin0.91.92.0-1.41.41.4-1.4
Time to tail flick, test, before self-admin2.63.03.11.7-1.7-1.81.7
Time to tail flick, test, after self-admin2.32.42.51.5-1.6-1.61.6
Delta time to tail flick, vehicle, before/after SA0.30.30.3-0.60.50.5-0.5
Delta time to tail flick, test, before/after SA0.00.00.00.1-0.1-0.10.1
Tibia length1.13.13.41.8-1.8-1.81.5
Ambulatory time before self-admin0.10.30.4-0.50.60.6-0.6
Ambulatory time after self-admin3.96.26.3-2.52.52.5-2.5
Bone: tissue strength0.00.00.10.2-0.2-0.20.0
Total heroin consumption0.60.70.9-0.90.80.8-0.8
Bone: trabecular number1.93.63.82.0-1.9-1.91.8
Bone: trabecular spacing2.13.03.1-1.71.71.7-1.8
Bone: trabecular thickness1.01.41.51.2-1.2-1.21.2
Bone: trabecular tissue density1.12.02.0-1.41.41.4-1.4
Water consumed over 24 hours0.81.61.7-1.31.31.3-1.3
Number of responses in last shaping day0.50.70.7-0.80.80.8-0.8