LOC102549417

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb gene expression LOC102549417 0.12 0.09 9.6e-03 0.08 0.05 0.05 0.08 6.0e-03 2.7e-02 2.2e-02 5.9e-03
2 pVTA alternative polyA XR_010053097.1 0.03 0.02 9.2e-03 0.01 0.01 0.01 0.01 4.3e-02 6.7e-02 5.0e-02 7.9e-02
3 RMTg isoform ratio XR_010053095.1 0.14 0.11 1.8e-03 0.1 0.03 0.06 0.07 1.2e-03 6.7e-02 1.2e-02 4.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density6.210.711.7-3.4-3.23.2
Area under the delay curve1.31.51.7-1.3-1.31.1
BMI with tail6.221.523.9-4.9-4.64.4
BMI without tail1.44.35.3-2.3-1.92.0
Body weight6.729.232.9-5.7-5.25.2
Weight adjusted by age0.71.01.2-1.1-1.10.8
Bone surface8.615.616.8-4.1-3.93.8
Bone volume7.513.414.4-3.8-3.53.7
Breakpoint value in progressive ratio session0.91.11.5-1.1-1.20.8
Number of licking bursts1.01.72.61.11.6-1.0
Context. condit. distance diff. score0.20.20.4-0.5-0.20.6
Locomotion velocity, session 13.94.25.02.01.9-2.2
Locomotion distance, session 13.03.84.32.11.9-1.9
Locomotion velocity, session 20.30.40.50.70.4-0.7
Locomotion distance, session 22.94.04.82.21.7-2.1
Locomotion velocity, session 35.36.06.42.52.5-2.3
Locomotion distance, session 33.23.53.92.01.9-1.7
Stereotopy head waving bouts, day 30.10.10.1-0.3-0.3-0.0
Stereotopy head waving duration, day 30.00.00.1-0.0-0.2-0.3
Locomotion velocity, session 72.62.93.41.61.6-1.9
Locomotion distance, session 73.74.64.92.22.1-2.2
Stereotopy head waving bouts, day 70.60.70.8-0.9-0.80.8
Stereotopy head waving duration, day 70.91.11.2-1.1-1.01.0
Locomotion velocity, session 80.60.70.70.80.8-0.9
Locomotion distance, session 81.31.92.31.51.4-1.2
Degree of sensitization distance0.00.00.1-0.2-0.30.0
Degree of sensitization stereotypy0.40.50.6-0.7-0.60.8
Conditioned locomotion0.10.10.20.30.5-0.2
Cocaine response after cond. corrected0.00.00.00.2-0.0-0.1
Cocaine response after cond. not corrected0.30.40.40.70.6-0.5
Cocaine response before conditioning2.32.73.31.61.8-1.5
Saline control response0.00.10.10.00.4-0.2
Bone: connectivity density3.14.95.3-2.3-2.22.1
Bone: cortical apparent density0.20.30.40.60.4-0.6
Bone: cortical area6.59.911.0-3.3-3.23.0
Bone: cortical porosity0.10.10.2-0.10.10.5
Bone: cortical porosity0.00.00.10.10.30.2
Bone: cortical thickness1.93.13.7-1.9-1.71.7
Bone: cortical thickness0.10.20.30.30.0-0.6
Bone: cortical tissue density0.30.40.50.70.5-0.7
Condit. Reinf. active minus inactive responses0.10.10.20.20.5-0.2
Condit. Reinf. active-inactive response ratio0.20.20.2-0.5-0.20.5
Condit. Reinf. active responses0.70.90.90.91.0-0.9
Condit. Reinf. inactive responses2.73.33.61.91.7-1.9
Incentive salience index mean0.00.00.0-0.10.20.1
Condit. Reinf. lever presses0.30.50.6-0.7-0.60.8
Condit. Reinf. active minus inactive responses0.60.71.2-0.9-0.51.1
Condit. Reinf. active-inactive response ratio0.40.40.8-0.6-0.40.9
Condit. Reinf. active responses0.00.10.1-0.3-0.10.4
Condit. Reinf. inactive responses0.60.70.90.80.8-1.0
Condit. Reinf. lever presses0.00.00.0-0.20.00.0
Condit. Reinf. lever reinforcers received0.00.00.10.10.4-0.0
Conditioned reinforcement - actives0.40.71.10.90.6-1.0
Conditioned reinforcement - inactives3.75.55.62.32.3-2.4
Conditioned locomotion0.30.40.40.60.6-0.6
Patch foraging indifference point 0 sec5.710.512.63.13.5-3.0
Patch foraging indifference point AUC0.71.01.11.01.0-1.0
Delay disc. indifference point, 0s delay1.82.02.2-1.5-1.31.5
Delay disc. indifference point, 16s delay1.11.21.7-1.0-1.30.8
Delay disc. indifference point, 2s delay2.02.22.4-1.5-1.41.5
Delay disc. indifference point, 24s delay0.60.70.8-0.9-0.90.8
Delay disc. indifference point, 4s delay1.61.72.0-1.3-1.41.2
Delay disc. indifference point, 8s delay1.41.72.0-1.3-1.41.1
Indifference point function ln k3.76.56.6-2.6-2.52.6
Indifference point function log k3.76.56.6-2.6-2.52.6
Patch foraging total patch changes 0 sec5.29.711.63.03.4-2.9
Patch foraging total patch changes 12 sec6.17.88.42.82.7-2.9
Patch foraging total patch changes 18 sec6.59.911.73.03.4-3.0
Patch foraging total patch changes 24 sec3.35.65.92.42.4-2.3
Patch foraging total patch changes 6 sec6.710.311.43.13.4-3.1
Patch foraging time to switch 0 sec1.93.94.12.02.0-2.0
Patch foraging water rate 0 sec3.06.36.8-2.6-2.42.5
Patch foraging water rate 12 sec2.24.64.9-2.2-2.22.0
Patch foraging water rate 18 sec0.40.70.9-0.8-0.90.7
Patch foraging water rate 24 sec4.36.16.9-2.6-2.42.3
Patch foraging water rate 6 sec6.79.710.1-3.1-3.23.1
Seeking ratio, delayed vs. immediate footshock0.20.30.3-0.5-0.50.6
Distance traveled before self-admin2.33.03.91.52.0-1.7
Distance traveled after self-admin1.61.92.31.31.5-1.4
Extensor digitorum longus weight4.919.420.6-4.5-4.54.1
Bone: elastic displacement6.47.48.12.92.5-2.8
Bone: elastic work0.00.00.10.20.0-0.3
Bone: endosteal estimation7.416.217.1-4.1-4.13.9
Bone: endosteal perimeter6.714.315.2-3.8-3.93.6
Epididymis fat weight0.31.11.4-1.2-1.10.9
Delta time in closed arm before/after self-admin0.00.00.00.0-0.10.2
Delta time in open arm before/after self-admin1.51.41.51.21.2-1.2
Diff in mean of infusions in LGA sessions1.01.31.5-1.1-1.21.0
Delay discount exponential model param1.41.51.81.31.4-1.1
Extinction: sum of active levers before priming2.62.93.3-1.8-1.41.8
Active lever presses in extinction session 60.20.20.3-0.5-0.40.4
Bone: final force11.518.419.4-4.4-4.34.2
Bone: final moment12.920.721.7-4.7-4.54.5
Food consumed during 24 hour testing period1.31.72.4-1.4-0.91.6
Glucose0.30.40.70.50.6-0.8
Heart weight0.30.50.6-0.7-0.60.8
Delay discount hyperbolic model param1.41.51.81.21.3-1.1
Intermittent access intake day 1-15 change0.10.20.4-0.3-0.60.3
Intermittent access intake escalation0.30.60.9-0.7-1.00.7
Intermittent access intake escalation 20.10.10.1-0.3-0.40.3
Intermitt. access day 1 inactive lever presses0.10.30.30.60.4-0.5
Intermitt. access day 15 inactive lever presses0.00.00.10.3-0.1-0.1
Intermitt. access escalation Index0.00.00.0-0.1-0.1-0.0
Intermittent access day 1 total infusions1.32.12.31.51.5-1.3
Intermittent access day 15 total infusions0.40.60.70.80.7-0.8
Intermittent access terminal intake (last 3 days)0.60.80.91.00.8-0.9
Intermittent access total infusions1.21.41.51.21.2-1.1
Intermittent access day 1 locomotion1.11.41.61.11.1-1.3
Intermittent access day 15 total locomotion0.30.60.70.80.8-0.7
Intermittent access total locomotion2.63.13.21.81.8-1.7
Intermittent access standard deviation0.10.10.20.30.0-0.5
Left kidney weight1.67.67.9-2.8-2.82.7
Right kidney weight4.821.723.3-4.8-4.84.4
Cocaine induced anxiety2.13.03.5-1.9-1.71.6
Post-drug Anxiety3.84.04.7-2.2-1.92.0
Baseline Anxiety0.20.30.4-0.5-0.40.6
Tail length0.00.00.1-0.10.30.1
Length with tail1.56.67.5-2.7-2.42.6
Length without tail5.718.519.9-4.5-4.24.2
Times rat made contact with spout0.10.10.30.10.5-0.1
Lifetime Intake2.02.42.61.61.6-1.5
Liver weight, left10.417.218.3-4.3-4.04.1
Liver weight, right3.35.76.3-2.5-2.22.4
Locomotor activity1.21.92.51.41.6-1.1
Locomotor testing distance3.05.46.42.42.5-2.1
Locomotor testing rearing1.83.74.51.92.1-1.7
Locomotion in novel chamber4.15.35.7-2.3-2.22.4
Locomotion in novel chamber post-restriction0.10.20.4-0.4-0.30.6
Fecal boli incidents, locomotor time 10.71.01.01.01.0-1.0
Change in fecal boli incidents, locomotor task0.10.10.1-0.3-0.30.3
Time >=10cm from walls, locomotor time 10.20.20.40.40.4-0.6
Bouts of movement, locomotor time 10.00.00.1-0.0-0.20.1
Total resting periods, locomotor time 10.30.30.40.60.4-0.5
Rest time, locomotor task time 10.60.80.91.00.9-0.8
Distance moved, locomotor task time 10.00.00.00.20.1-0.2
Vertical activity count, locomotor time 10.41.01.2-1.1-1.00.9
Time >=10cm from walls, locomotor time 20.20.30.30.50.5-0.6
Bouts of movement, locomotor time 22.43.84.5-2.0-1.72.1
Total resting periods, locomotor time 22.34.05.0-2.0-1.72.2
Rest time, locomotor task time 20.30.30.60.50.8-0.3
Distance moved, locomotor task time 20.10.10.20.2-0.2-0.4
Vertical activity count, locomotor time 20.10.10.2-0.4-0.50.3
Light reinforcement 10.92.33.41.51.8-1.1
Light reinforcement 20.00.00.10.10.30.1
Bone: marrow area7.015.216.1-3.9-4.03.7
Bone: maximum diameter2.03.74.5-2.0-2.11.6
Bone: maximum force15.026.628.3-5.3-5.24.9
Bone: maximum moment16.729.331.0-5.6-5.45.2
Mean time between licks in bursts0.10.10.20.50.3-0.4
Mean num. licks in bursts0.40.60.8-0.7-0.90.6
Cd content in liver0.30.40.50.60.7-0.4
Co content in liver0.40.40.50.60.6-0.7
Cu content in liver0.10.10.1-0.40.00.3
Fe content in liver1.82.12.41.41.4-1.5
K content in liver0.10.10.30.40.1-0.5
Mg content in liver0.40.40.70.60.8-0.4
Mn content in liver0.00.00.00.10.1-0.1
Na content in liver0.00.00.0-0.0-0.00.0
Rb content in liver1.82.12.81.21.7-1.4
Se content in liver3.74.44.52.12.1-2.1
Sr content in liver0.40.30.5-0.7-0.00.7
Zn content in liver1.21.32.01.11.4-0.8
Bone: minimum diameter8.014.614.8-3.8-3.83.8
Time in familiar zone, hab. session 10.00.00.10.20.20.1
Time in novel zone, hab. session 10.00.00.0-0.2-0.10.2
Total zone transitions, hab. session 10.10.10.20.50.2-0.2
Total locomotion distance, hab. session 10.30.40.50.70.5-0.6
Locomotion velocity, hab. session 10.20.20.30.50.4-0.5
Time in familiar zone, hab. session 21.31.41.6-1.2-1.11.3
Time in novel zone, hab. session 21.51.51.61.21.2-1.3
Total zone transitions, hab. session 20.20.30.30.60.5-0.5
Total locomotion distance, hab. session 20.40.50.60.80.7-0.7
Locomotion velocity, hab. session 20.20.30.40.60.5-0.5
Novel to familiar place preference ratio1.21.31.7-1.3-0.81.2
Novelty place preference0.70.71.0-1.0-0.51.0
Time in novel zone, NPP test0.40.50.7-0.8-0.30.8
Total zone transitions, NPP test2.73.94.22.01.9-2.0
Total locomotion distance, NPP test3.64.95.22.32.2-2.2
Locomotion velocity, NPP test2.43.43.51.91.8-1.8
Intraocular pressure6.59.310.93.13.3-2.8
Delta distance traveled before/after self-admin0.00.00.00.0-0.10.1
Delta ambulatory time before/after self-admin0.00.00.10.20.0-0.1
Parametrial fat weight0.61.31.41.21.2-1.1
Pavlov. Cond. lever latency0.10.20.20.40.4-0.4
Pavlov. Cond. magazine entry latency1.21.61.6-1.3-1.21.3
Pavlov. Cond. change in total contacts1.51.61.7-1.2-1.31.2
Pavlov. Cond. index score1.01.21.3-1.1-1.11.1
Pavlov. Cond. latency score0.70.91.0-1.0-1.01.0
Pavlov. Cond. lever contacts0.10.10.2-0.4-0.40.4
Pavlov. Cond. magazine entry number0.70.90.90.90.9-0.9
Pavlov. Cond. intertrial magazine entries4.55.36.42.32.1-2.5
Pavlov. Cond. lever-magazine prob. diff.1.41.71.8-1.3-1.41.3
Pavlov. Cond. response bias0.40.40.4-0.7-0.70.7
Pavlov. Cond. lever latency0.91.21.5-0.9-1.11.2
Pavlov. Cond. magazine entry latency0.10.10.20.20.1-0.5
Pavlov. Cond. change in total contacts0.40.60.9-0.9-0.60.8
Pavlov. Cond. index score0.20.30.50.30.4-0.7
Pavlov. Cond. latency score0.30.30.60.40.5-0.8
Pavlov. Cond. lever contacts0.60.91.10.71.0-1.1
Pavlov. Cond. magazine entry number0.00.00.10.20.30.1
Pavlov. Cond. intertrial magazine entries2.33.54.11.92.0-1.6
Pavlov. Cond. lever-magazine prob. diff.0.10.10.30.20.3-0.6
Pavlov. Cond. response bias0.20.30.50.40.6-0.7
Time in closed arm before self-admin1.51.92.2-1.5-1.41.2
Time in closed arm after self-admin0.40.40.5-0.6-0.70.7
Time in open arm before self-admin0.40.40.50.60.7-0.6
Time in open arm after self-admin0.40.50.60.60.7-0.7
Bone: periosteal estimation10.021.122.4-4.7-4.64.4
Bone: periosteal perimeter9.316.016.8-4.1-4.03.9
Bone: post-yield work7.911.613.2-3.5-3.63.1
Progressive ratio test 1 active lever presses7.29.09.33.13.0-3.0
Progressive ratio test 1 breakpoint7.18.79.03.02.9-2.9
Progressive ratio test 1 inactive lever presses0.60.80.91.00.9-0.9
Progressive ratio test 2 active lever presses1.31.51.61.21.2-1.3
Progressive ratio test 2 breakpoint1.21.41.41.21.2-1.2
Progressive ratio test 2 inactive lever presses0.40.70.80.90.7-0.9
Incentive Sensitization - Responses0.60.90.9-1.0-0.81.0
Incentive Sensitization - Breakpoint0.50.70.8-0.9-0.70.9
Sum of active levers in priming session hrs 5-60.10.10.10.20.3-0.2
Progressive ratio1.42.22.61.41.4-1.6
Food seeking constrained by brief footshock3.23.94.61.91.8-2.1
Seeking ratio, punishment vs. effort0.00.10.1-0.2-0.20.3
Retroperitoneal fat weight0.62.73.81.61.3-2.0
Reaction time number correct0.81.61.9-1.4-1.31.1
Reaction time mean minus median3.28.09.03.02.9-2.5
Reaction time mean minus median AUC2.25.66.22.52.5-2.1
Reaction time num false alarms1.72.43.61.51.9-1.2
Reaction time num false alarms AUC1.82.84.11.62.0-1.3
Reaction time trials correct on left0.81.61.9-1.4-1.31.1
Reaction time trials on left0.61.21.5-1.2-1.11.0
Reaction time mean0.71.01.31.11.1-0.8
Reaction time mean AUC0.40.70.90.81.0-0.6
Median of all reaction times0.00.00.10.10.2-0.0
Reaction time omissions7.911.512.73.63.3-3.4
Reaction time false alarm rate2.12.94.11.72.0-1.3
Reaction time premature initiation rate3.34.65.02.22.0-2.2
Reaction time premature initiations1.01.82.11.41.1-1.5
Std. dev. reaction times4.07.48.52.92.9-2.4
Reaction time trials completed0.61.21.5-1.2-1.11.0
Reaction time trials AUC1.12.12.5-1.6-1.51.3
Run reversals in cocaine runway, females0.30.30.5-0.5-0.70.5
Run reversals in cocaine runway, males0.70.70.90.90.8-0.7
Latency to leave start box in cocaine runway0.00.00.0-0.0-0.2-0.1
Latency to leave start box in cocaine runway, F0.70.81.11.00.7-1.0
Latency to leave start box in cocaine runway, M1.91.71.8-1.3-1.31.3
Std. dev. time between licks in bursts1.21.72.01.21.4-1.2
Total sessions with >9 infusions2.42.93.21.81.6-1.7
Short access day 1 total inactive lever presses1.72.22.31.51.5-1.4
Short access day 10 total inactive lever presses0.00.00.10.00.20.3
Short access day 1 total infusions1.21.61.71.31.3-1.2
Short access day 10 total infusions2.12.73.11.81.6-1.6
Short access total infusions3.54.54.72.22.2-2.0
Short access day 1 locomotion0.50.70.70.80.9-0.8
Short access day 10 total locomotion0.30.60.70.70.7-0.9
Short access total locomotion1.41.71.71.31.3-1.3
One hour access (0.3 mA shock)0.40.50.6-0.6-0.70.7
Compulsive drug intake0.50.50.7-0.6-0.80.8
One hour access (shock baseline)0.20.30.3-0.5-0.50.5
Social response proportion0.20.20.30.40.6-0.3
Social responses5.06.48.52.52.9-2.1
Social time0.40.60.7-0.8-0.80.7
Soleus weight1.03.03.6-1.7-1.91.6
Bone: stiffness19.832.134.5-5.9-5.65.5
Tibialis anterior weight2.99.810.6-3.3-3.13.0
Time to tail flick, vehicle, before self-admin1.11.21.31.11.1-1.0
Time to tail flick, vehicle, after self-admin0.50.60.9-0.8-0.90.6
Time to tail flick, test, before self-admin0.20.20.30.40.4-0.6
Time to tail flick, test, after self-admin1.11.11.2-1.0-1.01.1
Delta time to tail flick, vehicle, before/after SA0.80.70.9-0.8-1.00.7
Delta time to tail flick, test, before/after SA0.50.50.8-0.5-0.60.9
Tibia length4.211.512.5-3.5-3.33.4
Ambulatory time before self-admin2.53.74.61.82.2-1.8
Ambulatory time after self-admin2.32.73.21.61.8-1.5
Bone: tissue strength1.71.71.9-1.4-1.21.3
Total heroin consumption0.50.60.9-0.9-0.70.7
Bone: trabecular number3.35.55.8-2.4-2.32.3
Bone: trabecular spacing0.91.31.51.21.2-0.9
Bone: trabecular thickness0.20.20.4-0.4-0.40.6
Bone: trabecular tissue density0.60.81.5-0.9-0.61.2
Water consumed over 24 hours0.00.10.2-0.10.40.1
Number of responses in last shaping day0.00.00.10.20.3-0.1