LOC102548914

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC102548914 0.03 0.03 1.9e-03 0.02 0.02 0.02 0.02 9.6e-04 1.5e-03 1.0e-03 2.5e-03
2 PL gene expression LOC102548914 0.03 0.03 2.8e-04 0.02 0.03 0.02 0.02 3.5e-03 8.8e-04 1.1e-03 2.3e-03
3 BLA gene expression LOC102548914 0.09 0.09 2.4e-03 0.05 0 0 0.04 1.3e-03 1.8e-01 1.8e-01 4.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density5.49.09.73.1-3.12.8
Area under the delay curve0.00.00.10.2-0.3-0.1
BMI with tail0.51.51.9-1.21.1-1.4
BMI without tail0.30.50.7-0.80.7-0.7
Body weight1.97.98.7-2.92.8-2.7
Weight adjusted by age0.00.00.10.10.10.3
Bone surface2.95.05.12.3-2.32.2
Bone volume3.05.05.22.3-2.32.2
Breakpoint value in progressive ratio session1.21.42.01.0-1.01.4
Number of licking bursts0.20.20.40.6-0.30.2
Context. condit. distance diff. score0.00.00.1-0.30.1-0.1
Locomotion velocity, session 10.00.00.0-0.10.1-0.2
Locomotion distance, session 11.92.42.81.6-1.71.4
Locomotion velocity, session 20.20.30.3-0.60.4-0.6
Locomotion distance, session 20.00.00.0-0.0-0.0-0.0
Locomotion velocity, session 30.60.70.80.7-0.80.9
Locomotion distance, session 30.91.01.21.1-1.00.9
Stereotopy head waving bouts, day 31.82.12.41.4-1.41.5
Stereotopy head waving duration, day 30.10.10.20.2-0.30.5
Locomotion velocity, session 71.11.21.41.1-1.11.2
Locomotion distance, session 70.00.10.10.1-0.20.3
Stereotopy head waving bouts, day 70.00.00.0-0.00.1-0.2
Stereotopy head waving duration, day 70.40.50.50.7-0.60.7
Locomotion velocity, session 80.20.30.50.4-0.40.7
Locomotion distance, session 80.30.40.50.4-0.70.7
Degree of sensitization distance0.90.91.1-1.10.9-0.8
Degree of sensitization stereotypy0.10.20.3-0.20.4-0.5
Conditioned locomotion3.03.53.81.8-1.91.9
Cocaine response after cond. corrected0.80.91.30.8-1.10.9
Cocaine response after cond. not corrected1.92.12.51.4-1.61.3
Cocaine response before conditioning1.41.72.41.6-1.11.2
Saline control response0.70.91.01.0-1.00.9
Bone: connectivity density5.38.38.93.0-2.92.7
Bone: cortical apparent density0.40.50.80.9-0.70.6
Bone: cortical area0.30.50.50.7-0.70.7
Bone: cortical porosity1.41.61.71.3-1.21.3
Bone: cortical porosity1.21.31.51.2-1.11.1
Bone: cortical thickness0.00.00.0-0.10.1-0.2
Bone: cortical thickness1.61.92.01.4-1.41.4
Bone: cortical tissue density0.30.40.60.8-0.60.5
Condit. Reinf. active minus inactive responses0.50.60.6-0.80.8-0.8
Condit. Reinf. active-inactive response ratio0.70.70.8-0.90.9-0.9
Condit. Reinf. active responses0.20.20.30.6-0.50.4
Condit. Reinf. inactive responses1.82.22.41.6-1.51.3
Incentive salience index mean0.00.00.10.3-0.20.2
Condit. Reinf. lever presses0.70.91.21.1-0.90.8
Condit. Reinf. active minus inactive responses3.94.95.12.3-2.22.1
Condit. Reinf. active-inactive response ratio1.01.11.21.1-1.11.0
Condit. Reinf. active responses3.34.65.22.3-2.12.0
Condit. Reinf. inactive responses1.82.32.51.6-1.51.5
Condit. Reinf. lever presses2.02.72.91.7-1.71.6
Condit. Reinf. lever reinforcers received2.94.04.62.1-1.91.9
Conditioned reinforcement - actives1.11.12.00.7-0.81.4
Conditioned reinforcement - inactives3.23.64.42.1-1.81.7
Conditioned locomotion0.30.31.00.00.01.0
Patch foraging indifference point 0 sec0.30.40.6-0.60.8-0.6
Patch foraging indifference point AUC2.52.93.11.7-1.71.7
Delay disc. indifference point, 0s delay2.83.13.9-1.61.6-2.0
Delay disc. indifference point, 16s delay0.20.20.40.5-0.60.1
Delay disc. indifference point, 2s delay0.20.30.4-0.60.5-0.5
Delay disc. indifference point, 24s delay1.41.41.81.3-1.30.8
Delay disc. indifference point, 4s delay0.00.00.00.1-0.1-0.1
Delay disc. indifference point, 8s delay0.10.10.10.4-0.40.1
Indifference point function ln k0.00.00.0-0.20.2-0.0
Indifference point function log k0.00.00.0-0.20.2-0.0
Patch foraging total patch changes 0 sec0.20.30.4-0.40.7-0.5
Patch foraging total patch changes 12 sec0.60.81.0-0.81.0-0.9
Patch foraging total patch changes 18 sec0.00.00.00.00.10.2
Patch foraging total patch changes 24 sec0.70.91.0-0.91.0-0.8
Patch foraging total patch changes 6 sec0.00.00.10.00.2-0.3
Patch foraging time to switch 0 sec0.00.10.2-0.1-0.0-0.4
Patch foraging water rate 0 sec0.10.10.30.10.10.6
Patch foraging water rate 12 sec1.62.42.7-1.61.6-1.4
Patch foraging water rate 18 sec0.60.90.9-1.01.0-0.9
Patch foraging water rate 24 sec2.02.83.6-1.91.7-1.4
Patch foraging water rate 6 sec1.31.92.1-1.51.4-1.3
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.40.2-0.0
Distance traveled before self-admin0.00.00.1-0.3-0.20.1
Distance traveled after self-admin1.01.11.8-1.30.8-1.0
Extensor digitorum longus weight4.618.118.74.3-4.34.2
Bone: elastic displacement0.80.91.00.9-0.91.0
Bone: elastic work1.11.51.51.2-1.21.2
Bone: endosteal estimation0.41.01.10.9-0.91.1
Bone: endosteal perimeter0.10.30.30.5-0.60.6
Epididymis fat weight14.333.236.0-5.96.0-5.4
Delta time in closed arm before/after self-admin0.00.00.1-0.30.2-0.1
Delta time in open arm before/after self-admin0.30.30.40.4-0.60.6
Diff in mean of infusions in LGA sessions0.40.40.60.6-0.40.8
Delay discount exponential model param0.20.20.4-0.50.6-0.2
Extinction: sum of active levers before priming0.50.50.60.8-0.70.6
Active lever presses in extinction session 60.40.40.90.3-0.41.0
Bone: final force0.10.20.30.3-0.40.6
Bone: final moment0.20.20.40.3-0.50.6
Food consumed during 24 hour testing period0.30.30.40.7-0.60.6
Glucose0.20.30.4-0.50.6-0.5
Heart weight9.713.814.5-3.73.6-3.8
Delay discount hyperbolic model param0.20.20.4-0.40.6-0.3
Intermittent access intake day 1-15 change0.10.10.10.3-0.30.3
Intermittent access intake escalation0.00.00.0-0.0-0.10.1
Intermittent access intake escalation 20.20.20.4-0.50.4-0.6
Intermitt. access day 1 inactive lever presses0.10.10.20.4-0.40.3
Intermitt. access day 15 inactive lever presses8.18.99.22.9-3.03.0
Intermitt. access escalation Index0.20.10.2-0.50.3-0.3
Intermittent access day 1 total infusions5.56.47.42.7-2.52.4
Intermittent access day 15 total infusions2.42.63.01.7-1.61.5
Intermittent access terminal intake (last 3 days)1.81.92.11.4-1.41.4
Intermittent access total infusions2.32.52.91.7-1.51.6
Intermittent access day 1 locomotion2.12.22.51.6-1.61.3
Intermittent access day 15 total locomotion0.80.91.31.1-0.80.8
Intermittent access total locomotion0.40.40.60.8-0.50.6
Intermittent access standard deviation0.20.20.30.4-0.30.6
Left kidney weight0.00.00.0-0.10.1-0.1
Right kidney weight1.02.83.3-1.51.7-1.8
Cocaine induced anxiety0.40.40.50.7-0.60.6
Post-drug Anxiety0.80.91.6-0.70.8-1.3
Baseline Anxiety1.61.72.1-1.31.1-1.5
Tail length0.10.30.4-0.70.7-0.3
Length with tail1.55.46.4-2.52.4-2.1
Length without tail0.71.41.5-1.21.2-1.2
Times rat made contact with spout2.32.62.91.6-1.61.7
Lifetime Intake3.23.63.92.0-1.72.0
Liver weight, left1.11.82.0-1.21.4-1.4
Liver weight, right9.115.115.4-3.93.9-3.9
Locomotor activity0.20.30.4-0.40.5-0.7
Locomotor testing distance0.10.10.20.3-0.40.3
Locomotor testing rearing0.71.11.90.7-0.91.4
Locomotion in novel chamber1.31.62.6-1.61.2-1.0
Locomotion in novel chamber post-restriction2.22.62.8-1.71.7-1.5
Fecal boli incidents, locomotor time 10.20.20.40.3-0.60.4
Change in fecal boli incidents, locomotor task4.34.14.4-2.02.1-2.0
Time >=10cm from walls, locomotor time 10.10.10.1-0.30.2-0.2
Bouts of movement, locomotor time 12.22.43.01.5-1.71.5
Total resting periods, locomotor time 12.52.83.31.6-1.81.6
Rest time, locomotor task time 10.10.10.10.3-0.20.3
Distance moved, locomotor task time 11.31.51.7-1.31.1-1.2
Vertical activity count, locomotor time 10.60.70.8-0.90.7-0.9
Time >=10cm from walls, locomotor time 20.20.20.40.4-0.20.6
Bouts of movement, locomotor time 20.20.20.3-0.50.3-0.5
Total resting periods, locomotor time 20.00.00.0-0.2-0.0-0.2
Rest time, locomotor task time 21.61.82.41.5-1.41.1
Distance moved, locomotor task time 20.91.11.3-1.11.1-0.9
Vertical activity count, locomotor time 20.50.50.8-0.90.8-0.4
Light reinforcement 14.07.48.32.8-2.92.4
Light reinforcement 23.64.85.62.3-2.41.8
Bone: marrow area0.51.01.21.0-1.01.1
Bone: maximum diameter0.91.71.81.3-1.31.2
Bone: maximum force0.00.00.10.0-0.20.3
Bone: maximum moment0.00.10.10.1-0.30.4
Mean time between licks in bursts2.53.43.5-1.81.9-1.9
Mean num. licks in bursts0.10.10.30.1-0.40.5
Cd content in liver0.00.00.0-0.0-0.10.0
Co content in liver5.86.87.12.7-2.62.6
Cu content in liver0.00.00.00.1-0.20.2
Fe content in liver0.00.00.1-0.30.2-0.0
K content in liver0.10.10.1-0.30.2-0.3
Mg content in liver0.20.20.3-0.50.4-0.5
Mn content in liver0.60.71.00.7-0.81.0
Na content in liver0.40.40.50.5-0.70.6
Rb content in liver0.00.00.1-0.30.1-0.2
Se content in liver0.40.50.7-0.80.7-0.5
Sr content in liver0.10.10.2-0.20.2-0.4
Zn content in liver1.41.51.8-1.31.2-1.1
Bone: minimum diameter0.00.10.1-0.30.4-0.2
Time in familiar zone, hab. session 10.70.70.9-1.00.8-0.7
Time in novel zone, hab. session 10.70.70.8-0.80.9-0.8
Total zone transitions, hab. session 10.10.10.20.3-0.40.4
Total locomotion distance, hab. session 10.20.30.40.5-0.40.6
Locomotion velocity, hab. session 11.11.61.71.3-1.21.2
Time in familiar zone, hab. session 20.00.00.0-0.2-0.10.2
Time in novel zone, hab. session 20.50.50.6-0.60.7-0.8
Total zone transitions, hab. session 20.10.10.10.4-0.40.4
Total locomotion distance, hab. session 20.30.40.40.6-0.60.6
Locomotion velocity, hab. session 20.50.70.80.9-0.80.8
Novel to familiar place preference ratio1.01.01.4-0.91.0-1.2
Novelty place preference1.71.72.1-1.21.3-1.4
Time in novel zone, NPP test2.02.02.4-1.31.4-1.5
Total zone transitions, NPP test1.42.02.21.4-1.51.4
Total locomotion distance, NPP test2.02.82.91.7-1.71.6
Locomotion velocity, NPP test3.44.95.12.3-2.22.1
Intraocular pressure5.47.58.2-2.62.7-2.9
Delta distance traveled before/after self-admin1.41.51.6-1.31.2-1.2
Delta ambulatory time before/after self-admin0.20.20.3-0.50.5-0.5
Parametrial fat weight6.212.012.8-3.53.3-3.6
Pavlov. Cond. lever latency2.02.52.8-1.71.6-1.5
Pavlov. Cond. magazine entry latency0.00.00.00.1-0.20.2
Pavlov. Cond. change in total contacts0.10.10.10.3-0.20.2
Pavlov. Cond. index score0.81.01.11.1-1.00.9
Pavlov. Cond. latency score0.81.01.11.0-1.00.9
Pavlov. Cond. lever contacts1.21.51.71.3-1.21.1
Pavlov. Cond. magazine entry number0.40.50.6-0.70.8-0.7
Pavlov. Cond. intertrial magazine entries1.41.62.11.5-1.21.1
Pavlov. Cond. lever-magazine prob. diff.1.72.12.21.5-1.51.4
Pavlov. Cond. response bias1.51.81.91.3-1.41.3
Pavlov. Cond. lever latency1.82.52.7-1.61.6-1.5
Pavlov. Cond. magazine entry latency0.40.50.70.8-0.60.6
Pavlov. Cond. change in total contacts0.81.11.31.2-1.01.0
Pavlov. Cond. index score1.31.61.91.4-1.21.2
Pavlov. Cond. latency score1.21.51.81.3-1.21.2
Pavlov. Cond. lever contacts0.91.31.51.2-1.11.0
Pavlov. Cond. magazine entry number0.20.20.2-0.50.4-0.4
Pavlov. Cond. intertrial magazine entries3.64.64.7-2.12.2-2.2
Pavlov. Cond. lever-magazine prob. diff.1.01.21.51.2-1.01.1
Pavlov. Cond. response bias1.82.42.81.7-1.61.4
Time in closed arm before self-admin0.40.50.6-0.80.8-0.4
Time in closed arm after self-admin1.51.52.0-1.41.3-0.9
Time in open arm before self-admin0.20.20.30.5-0.2-0.4
Time in open arm after self-admin2.02.22.91.7-1.71.0
Bone: periosteal estimation0.71.31.41.2-1.21.2
Bone: periosteal perimeter0.20.30.40.6-0.60.6
Bone: post-yield work0.40.60.80.6-0.80.9
Progressive ratio test 1 active lever presses1.91.92.41.5-1.11.5
Progressive ratio test 1 breakpoint1.61.72.11.4-1.01.4
Progressive ratio test 1 inactive lever presses3.84.25.51.9-1.82.4
Progressive ratio test 2 active lever presses0.00.00.10.2-0.10.3
Progressive ratio test 2 breakpoint0.10.10.20.3-0.20.4
Progressive ratio test 2 inactive lever presses2.12.42.71.5-1.41.6
Incentive Sensitization - Responses0.10.10.1-0.30.3-0.4
Incentive Sensitization - Breakpoint0.30.30.3-0.50.4-0.6
Sum of active levers in priming session hrs 5-60.90.91.21.1-1.00.6
Progressive ratio0.10.10.2-0.10.10.5
Food seeking constrained by brief footshock4.35.36.52.3-2.02.5
Seeking ratio, punishment vs. effort0.60.81.11.1-0.90.6
Retroperitoneal fat weight21.771.373.6-8.68.5-8.2
Reaction time number correct0.60.80.90.9-0.90.9
Reaction time mean minus median0.00.00.00.10.10.1
Reaction time mean minus median AUC0.00.00.1-0.00.3-0.1
Reaction time num false alarms0.10.10.30.5-0.4-0.1
Reaction time num false alarms AUC0.20.30.50.7-0.5-0.1
Reaction time trials correct on left0.60.80.90.9-0.90.9
Reaction time trials on left0.60.90.90.9-1.00.9
Reaction time mean1.11.62.0-1.01.3-1.4
Reaction time mean AUC1.01.31.8-0.81.2-1.3
Median of all reaction times1.31.82.5-1.11.3-1.6
Reaction time omissions0.10.20.30.6-0.30.3
Reaction time false alarm rate0.10.10.30.20.1-0.5
Reaction time premature initiation rate0.20.30.4-0.40.5-0.6
Reaction time premature initiations0.00.00.00.1-0.1-0.1
Std. dev. reaction times0.20.30.5-0.40.7-0.6
Reaction time trials completed0.60.90.90.9-1.00.9
Reaction time trials AUC0.81.11.21.0-1.11.0
Run reversals in cocaine runway, females0.10.10.2-0.00.2-0.4
Run reversals in cocaine runway, males0.10.10.20.4-0.40.4
Latency to leave start box in cocaine runway0.50.60.70.8-0.70.7
Latency to leave start box in cocaine runway, F0.70.81.31.1-0.80.7
Latency to leave start box in cocaine runway, M0.60.51.10.4-0.61.0
Std. dev. time between licks in bursts0.10.10.1-0.30.2-0.3
Total sessions with >9 infusions2.62.94.41.6-1.32.1
Short access day 1 total inactive lever presses5.46.07.62.8-2.42.2
Short access day 10 total inactive lever presses1.11.21.71.3-1.10.9
Short access day 1 total infusions5.45.77.12.4-2.12.7
Short access day 10 total infusions4.34.85.42.3-2.02.2
Short access total infusions3.03.44.21.8-1.62.1
Short access day 1 locomotion6.97.49.02.7-2.53.0
Short access day 10 total locomotion0.70.80.91.0-0.90.8
Short access total locomotion0.60.60.80.8-0.70.9
One hour access (0.3 mA shock)1.82.12.21.5-1.41.4
Compulsive drug intake0.30.30.6-0.50.5-0.8
One hour access (shock baseline)1.82.12.51.4-1.31.6
Social response proportion0.20.30.4-0.50.7-0.3
Social responses0.00.00.10.00.3-0.1
Social time0.30.40.8-0.60.9-0.3
Soleus weight4.412.913.63.7-3.73.4
Bone: stiffness0.00.00.0-0.20.1-0.1
Tibialis anterior weight3.612.213.03.6-3.63.3
Time to tail flick, vehicle, before self-admin2.22.32.8-1.51.7-1.4
Time to tail flick, vehicle, after self-admin4.14.45.1-2.22.3-1.7
Time to tail flick, test, before self-admin0.50.50.50.6-0.70.7
Time to tail flick, test, after self-admin0.00.00.1-0.00.3-0.1
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.40.10.1
Delta time to tail flick, test, before/after SA0.60.50.90.9-0.60.6
Tibia length2.56.97.0-2.62.6-2.6
Ambulatory time before self-admin0.10.10.2-0.0-0.40.2
Ambulatory time after self-admin0.80.91.4-1.20.7-0.9
Bone: tissue strength1.01.01.2-1.00.9-1.1
Total heroin consumption3.13.74.42.1-1.91.8
Bone: trabecular number4.26.67.12.7-2.62.4
Bone: trabecular spacing3.74.85.3-2.22.1-2.3
Bone: trabecular thickness0.91.11.31.0-0.91.1
Bone: trabecular tissue density0.10.20.20.4-0.50.4
Water consumed over 24 hours1.82.22.71.7-1.51.3
Number of responses in last shaping day0.50.50.80.6-0.50.9