LOC102548046

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC102548046 0.04 0.04 5.3e-04 0.02 0.03 0.03 0.02 5.8e-03 1.0e-03 1.4e-03 6.0e-03
2 Liver mRNA stability LOC102548046 0.04 0.03 5.2e-07 0.05 0.05 0.05 0.05 2.5e-06 2.9e-06 6.1e-06 6.7e-06
3 Liver gene expression LOC102548046 0.14 0.08 0.0e+00 0.17 0.17 0.17 0.17 1.0e-18 3.5e-18 1.5e-18 1.8e-18

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.01.72.30.8-1.41.5
Area under the delay curve0.80.91.7-1.30.7-0.7
BMI with tail0.20.50.80.90.6-0.5
BMI without tail0.91.93.01.7-1.11.2
Body weight0.52.33.3-0.81.8-1.7
Weight adjusted by age0.10.20.2-0.30.4-0.4
Bone surface0.61.12.7-1.60.6-0.6
Bone volume0.10.10.4-0.6-0.10.2
Breakpoint value in progressive ratio session0.50.50.8-0.10.9-0.9
Number of licking bursts0.00.00.0-0.1-0.10.0
Context. condit. distance diff. score0.40.50.6-0.60.8-0.7
Locomotion velocity, session 10.20.20.6-0.80.2-0.3
Locomotion distance, session 12.83.64.42.1-1.91.7
Locomotion velocity, session 20.70.80.90.8-1.00.9
Locomotion distance, session 26.69.29.83.0-3.13.0
Locomotion velocity, session 30.10.10.2-0.2-0.40.1
Locomotion distance, session 30.40.40.70.8-0.60.4
Stereotopy head waving bouts, day 33.13.64.2-1.72.0-2.0
Stereotopy head waving duration, day 33.13.73.9-1.92.0-2.0
Locomotion velocity, session 70.10.10.20.1-0.40.4
Locomotion distance, session 72.93.73.81.9-1.92.0
Stereotopy head waving bouts, day 74.65.25.8-2.22.4-2.2
Stereotopy head waving duration, day 76.47.79.2-3.02.7-2.5
Locomotion velocity, session 80.50.61.3-1.20.5-0.5
Locomotion distance, session 82.23.34.22.1-1.71.7
Degree of sensitization distance2.82.83.51.3-1.71.9
Degree of sensitization stereotypy1.71.92.2-1.41.5-1.3
Conditioned locomotion0.10.10.20.5-0.10.2
Cocaine response after cond. corrected0.50.60.8-0.40.8-0.9
Cocaine response after cond. not corrected0.20.20.3-0.40.4-0.5
Cocaine response before conditioning0.50.61.0-0.0-1.00.9
Saline control response0.40.50.8-0.2-0.90.9
Bone: connectivity density1.72.73.80.7-1.91.9
Bone: cortical apparent density1.21.62.31.5-1.01.2
Bone: cortical area3.45.16.4-1.72.5-2.4
Bone: cortical porosity1.92.03.1-1.71.3-1.2
Bone: cortical porosity2.62.84.2-2.01.5-1.4
Bone: cortical thickness0.30.50.90.31.0-0.7
Bone: cortical thickness0.10.10.20.20.5-0.3
Bone: cortical tissue density1.31.72.41.5-1.11.3
Condit. Reinf. active minus inactive responses0.10.10.20.2-0.30.5
Condit. Reinf. active-inactive response ratio0.10.10.1-0.1-0.30.4
Condit. Reinf. active responses0.70.91.10.8-0.91.0
Condit. Reinf. inactive responses1.11.31.61.2-1.01.1
Incentive salience index mean0.00.00.1-0.0-0.10.3
Condit. Reinf. lever presses0.10.10.20.3-0.10.4
Condit. Reinf. active minus inactive responses0.30.30.7-0.80.3-0.4
Condit. Reinf. active-inactive response ratio0.10.10.3-0.50.1-0.1
Condit. Reinf. active responses0.00.10.1-0.0-0.30.2
Condit. Reinf. inactive responses0.50.70.90.7-0.90.8
Condit. Reinf. lever presses0.91.21.40.9-1.21.2
Condit. Reinf. lever reinforcers received0.10.10.10.2-0.30.3
Conditioned reinforcement - actives0.90.91.41.2-0.80.8
Conditioned reinforcement - inactives0.20.20.2-0.40.5-0.5
Conditioned locomotion0.91.11.81.3-0.80.8
Patch foraging indifference point 0 sec0.71.22.11.4-0.90.8
Patch foraging indifference point AUC2.42.83.41.4-1.91.7
Delay disc. indifference point, 0s delay0.80.91.8-1.30.7-0.6
Delay disc. indifference point, 16s delay0.30.30.40.4-0.60.6
Delay disc. indifference point, 2s delay0.20.20.5-0.70.1-0.2
Delay disc. indifference point, 24s delay0.00.00.00.0-0.20.2
Delay disc. indifference point, 4s delay0.91.02.0-1.40.7-0.7
Delay disc. indifference point, 8s delay3.43.55.6-2.41.6-1.6
Indifference point function ln k0.30.40.60.10.8-0.8
Indifference point function log k0.30.40.60.10.8-0.8
Patch foraging total patch changes 0 sec1.11.72.91.7-1.11.1
Patch foraging total patch changes 12 sec4.25.56.42.5-2.32.2
Patch foraging total patch changes 18 sec2.02.62.61.6-1.61.6
Patch foraging total patch changes 24 sec0.10.10.1-0.30.4-0.3
Patch foraging total patch changes 6 sec1.92.83.31.8-1.61.6
Patch foraging time to switch 0 sec0.20.40.6-0.70.6-0.5
Patch foraging water rate 0 sec0.50.81.31.1-0.90.7
Patch foraging water rate 12 sec0.20.30.80.90.4-0.2
Patch foraging water rate 18 sec0.10.20.30.6-0.20.3
Patch foraging water rate 24 sec1.21.72.61.6-1.11.1
Patch foraging water rate 6 sec0.10.20.40.60.1-0.1
Seeking ratio, delayed vs. immediate footshock0.40.50.80.3-0.80.9
Distance traveled before self-admin0.70.81.5-1.20.7-0.6
Distance traveled after self-admin0.91.01.21.1-0.91.0
Extensor digitorum longus weight1.45.37.82.8-2.02.1
Bone: elastic displacement1.21.41.91.4-1.20.9
Bone: elastic work0.30.40.7-0.20.8-0.8
Bone: endosteal estimation1.32.72.9-1.71.6-1.7
Bone: endosteal perimeter5.010.413.0-3.62.9-3.1
Epididymis fat weight0.20.40.80.20.6-0.9
Delta time in closed arm before/after self-admin0.50.40.7-0.80.5-0.6
Delta time in open arm before/after self-admin1.71.62.01.1-1.31.4
Diff in mean of infusions in LGA sessions1.31.52.0-0.81.4-1.3
Delay discount exponential model param1.11.22.21.5-0.80.8
Extinction: sum of active levers before priming0.10.10.10.10.3-0.3
Active lever presses in extinction session 60.10.10.20.40.1-0.2
Bone: final force1.42.33.0-1.31.7-1.4
Bone: final moment1.62.63.4-1.41.9-1.5
Food consumed during 24 hour testing period0.10.10.2-0.4-0.20.3
Glucose0.00.00.00.1-0.00.1
Heart weight0.40.60.90.10.9-0.9
Delay discount hyperbolic model param0.91.01.91.4-0.70.7
Intermittent access intake day 1-15 change0.10.10.2-0.5-0.20.2
Intermittent access intake escalation0.10.10.2-0.3-0.40.4
Intermittent access intake escalation 20.40.40.70.2-0.80.8
Intermitt. access day 1 inactive lever presses2.42.63.0-1.71.5-1.5
Intermitt. access day 15 inactive lever presses0.50.50.70.5-0.80.8
Intermitt. access escalation Index0.90.81.4-1.20.7-0.7
Intermittent access day 1 total infusions0.40.40.7-0.00.8-0.8
Intermittent access day 15 total infusions0.00.00.0-0.20.1-0.1
Intermittent access terminal intake (last 3 days)0.20.30.3-0.50.5-0.5
Intermittent access total infusions0.30.30.5-0.30.7-0.7
Intermittent access day 1 locomotion0.30.30.70.9-0.30.3
Intermittent access day 15 total locomotion0.10.10.2-0.00.4-0.4
Intermittent access total locomotion0.20.20.50.7-0.20.2
Intermittent access standard deviation4.44.74.9-2.12.2-2.2
Left kidney weight3.59.911.3-2.83.4-3.3
Right kidney weight1.23.34.0-1.52.0-1.9
Cocaine induced anxiety0.40.51.1-1.00.4-0.4
Post-drug Anxiety0.10.20.2-0.2-0.50.5
Baseline Anxiety0.00.00.10.3-0.10.1
Tail length0.20.71.00.3-0.91.0
Length with tail1.14.04.4-2.12.0-1.9
Length without tail4.49.610.8-2.73.3-3.3
Times rat made contact with spout0.40.50.70.4-0.80.8
Lifetime Intake0.50.60.8-0.40.8-0.9
Liver weight, left3.15.05.3-2.32.2-2.3
Liver weight, right0.81.41.6-1.11.2-1.3
Locomotor activity0.00.00.00.1-0.20.1
Locomotor testing distance0.00.00.1-0.30.1-0.2
Locomotor testing rearing1.21.92.61.0-1.61.5
Locomotion in novel chamber0.60.71.20.2-1.01.1
Locomotion in novel chamber post-restriction0.30.40.5-0.70.6-0.6
Fecal boli incidents, locomotor time 10.20.20.60.8-0.20.2
Change in fecal boli incidents, locomotor task0.10.10.20.5-0.20.2
Time >=10cm from walls, locomotor time 10.10.10.3-0.6-0.20.2
Bouts of movement, locomotor time 10.10.10.20.4-0.10.1
Total resting periods, locomotor time 10.10.10.20.5-0.30.3
Rest time, locomotor task time 10.30.40.5-0.10.7-0.7
Distance moved, locomotor task time 10.20.30.40.2-0.60.6
Vertical activity count, locomotor time 12.02.12.41.2-1.61.6
Time >=10cm from walls, locomotor time 20.50.60.70.5-0.90.9
Bouts of movement, locomotor time 20.30.40.4-0.50.7-0.7
Total resting periods, locomotor time 20.40.40.5-0.50.7-0.7
Rest time, locomotor task time 21.01.21.5-0.71.2-1.2
Distance moved, locomotor task time 20.40.50.60.5-0.80.8
Vertical activity count, locomotor time 20.40.50.60.8-0.60.6
Light reinforcement 12.24.04.82.2-2.01.9
Light reinforcement 20.20.20.30.5-0.50.4
Bone: marrow area1.32.83.0-1.71.6-1.7
Bone: maximum diameter8.014.815.1-3.83.9-3.8
Bone: maximum force1.72.93.8-1.42.0-1.8
Bone: maximum moment1.93.34.2-1.42.0-1.9
Mean time between licks in bursts0.00.10.1-0.1-0.20.4
Mean num. licks in bursts0.40.50.60.8-0.60.7
Cd content in liver1.01.11.41.2-0.90.9
Co content in liver0.30.30.60.8-0.30.5
Cu content in liver0.10.10.20.00.4-0.4
Fe content in liver0.10.20.3-0.60.4-0.2
K content in liver0.00.00.1-0.2-0.30.1
Mg content in liver1.61.61.81.1-1.31.4
Mn content in liver0.80.91.3-1.10.8-0.9
Na content in liver0.50.51.0-1.00.5-0.5
Rb content in liver3.24.04.21.9-2.02.1
Se content in liver0.50.71.00.2-1.01.0
Sr content in liver0.10.10.2-0.00.4-0.4
Zn content in liver1.92.12.7-1.31.6-1.4
Bone: minimum diameter3.05.55.9-2.42.3-2.3
Time in familiar zone, hab. session 10.10.10.20.4-0.30.2
Time in novel zone, hab. session 10.30.30.7-0.80.4-0.3
Total zone transitions, hab. session 12.23.13.41.6-1.81.8
Total locomotion distance, hab. session 11.82.63.01.7-1.51.5
Locomotion velocity, hab. session 12.43.44.22.1-1.71.7
Time in familiar zone, hab. session 20.00.00.10.4-0.0-0.1
Time in novel zone, hab. session 20.40.40.7-0.80.5-0.4
Total zone transitions, hab. session 26.28.08.52.9-2.82.7
Total locomotion distance, hab. session 25.77.69.83.1-2.62.5
Locomotion velocity, hab. session 25.87.910.03.2-2.72.5
Novel to familiar place preference ratio2.02.02.21.5-1.41.4
Novelty place preference1.41.51.61.3-1.21.2
Time in novel zone, NPP test1.81.92.01.4-1.31.4
Total zone transitions, NPP test4.26.07.12.7-2.32.3
Total locomotion distance, NPP test7.610.514.23.8-2.92.9
Locomotion velocity, NPP test6.49.112.43.5-2.72.7
Intraocular pressure0.30.40.80.9-0.40.4
Delta distance traveled before/after self-admin2.42.53.51.9-1.41.5
Delta ambulatory time before/after self-admin2.32.53.41.9-1.41.5
Parametrial fat weight0.10.20.40.20.4-0.6
Pavlov. Cond. lever latency0.40.50.70.5-0.80.7
Pavlov. Cond. magazine entry latency2.43.13.7-1.91.7-1.6
Pavlov. Cond. change in total contacts0.10.10.30.6-0.10.3
Pavlov. Cond. index score1.62.02.2-1.31.5-1.4
Pavlov. Cond. latency score1.92.52.8-1.51.7-1.6
Pavlov. Cond. lever contacts0.10.10.2-0.00.5-0.3
Pavlov. Cond. magazine entry number3.54.44.62.1-2.12.0
Pavlov. Cond. intertrial magazine entries2.73.23.81.5-1.91.9
Pavlov. Cond. lever-magazine prob. diff.1.01.31.4-1.11.2-1.1
Pavlov. Cond. response bias1.61.92.1-1.31.5-1.3
Pavlov. Cond. lever latency0.91.21.4-1.01.1-1.2
Pavlov. Cond. magazine entry latency0.20.20.60.8-0.10.2
Pavlov. Cond. change in total contacts0.81.11.11.1-1.01.0
Pavlov. Cond. index score0.50.70.80.9-0.70.9
Pavlov. Cond. latency score0.30.30.40.6-0.50.6
Pavlov. Cond. lever contacts1.11.62.01.0-1.31.4
Pavlov. Cond. magazine entry number0.60.71.2-1.10.6-0.7
Pavlov. Cond. intertrial magazine entries0.10.20.3-0.2-0.60.5
Pavlov. Cond. lever-magazine prob. diff.0.60.80.90.9-0.80.9
Pavlov. Cond. response bias0.81.01.11.1-0.91.1
Time in closed arm before self-admin0.10.10.10.4-0.10.2
Time in closed arm after self-admin2.72.83.2-1.51.8-1.7
Time in open arm before self-admin0.50.50.6-0.70.7-0.8
Time in open arm after self-admin0.60.70.90.7-0.90.9
Bone: periosteal estimation3.26.67.3-2.32.7-2.7
Bone: periosteal perimeter6.811.311.8-3.23.4-3.4
Bone: post-yield work0.20.30.40.6-0.30.6
Progressive ratio test 1 active lever presses0.00.00.00.1-0.10.0
Progressive ratio test 1 breakpoint0.00.00.00.10.1-0.1
Progressive ratio test 1 inactive lever presses0.20.20.4-0.60.4-0.4
Progressive ratio test 2 active lever presses0.10.10.20.5-0.0-0.0
Progressive ratio test 2 breakpoint0.10.10.30.5-0.10.1
Progressive ratio test 2 inactive lever presses0.00.00.0-0.00.1-0.2
Incentive Sensitization - Responses0.70.70.9-0.50.9-0.9
Incentive Sensitization - Breakpoint0.90.91.1-0.71.1-1.1
Sum of active levers in priming session hrs 5-60.40.40.6-0.50.8-0.6
Progressive ratio0.20.20.50.20.5-0.7
Food seeking constrained by brief footshock0.70.81.3-0.60.9-1.1
Seeking ratio, punishment vs. effort0.10.20.4-0.70.1-0.0
Retroperitoneal fat weight0.51.52.3-0.81.3-1.5
Reaction time number correct3.65.16.12.1-2.52.2
Reaction time mean minus median0.50.70.9-0.61.0-0.9
Reaction time mean minus median AUC0.91.11.2-1.11.0-1.1
Reaction time num false alarms0.10.10.30.6-0.30.2
Reaction time num false alarms AUC0.20.30.60.8-0.50.4
Reaction time trials correct on left3.65.16.12.1-2.52.2
Reaction time trials on left3.55.05.92.0-2.42.2
Reaction time mean0.00.00.0-0.20.2-0.1
Reaction time mean AUC0.00.00.00.10.00.0
Median of all reaction times0.00.00.0-0.1-0.10.1
Reaction time omissions0.71.01.1-0.81.1-1.1
Reaction time false alarm rate0.30.40.6-0.40.7-0.8
Reaction time premature initiation rate2.53.34.22.0-1.61.8
Reaction time premature initiations5.47.68.62.9-2.72.7
Std. dev. reaction times0.10.10.1-0.10.4-0.3
Reaction time trials completed3.55.05.92.0-2.42.2
Reaction time trials AUC4.26.06.92.3-2.62.5
Run reversals in cocaine runway, females0.10.10.3-0.00.2-0.5
Run reversals in cocaine runway, males0.30.30.70.30.4-0.9
Latency to leave start box in cocaine runway0.20.20.50.7-0.20.2
Latency to leave start box in cocaine runway, F0.50.50.70.8-0.70.6
Latency to leave start box in cocaine runway, M0.50.51.11.0-0.40.5
Std. dev. time between licks in bursts1.72.02.21.3-1.51.5
Total sessions with >9 infusions1.61.82.3-0.91.5-1.5
Short access day 1 total inactive lever presses0.60.60.8-0.70.8-0.9
Short access day 10 total inactive lever presses0.70.81.5-1.20.7-0.7
Short access day 1 total infusions1.92.02.6-1.11.6-1.6
Short access day 10 total infusions2.42.63.3-1.21.8-1.8
Short access total infusions0.60.61.0-0.30.9-1.0
Short access day 1 locomotion0.50.60.7-0.50.8-0.9
Short access day 10 total locomotion0.50.60.8-0.50.9-0.8
Short access total locomotion1.31.31.8-0.61.3-1.3
One hour access (0.3 mA shock)0.10.10.20.4-0.10.1
Compulsive drug intake0.60.61.11.0-0.60.6
One hour access (shock baseline)0.00.00.1-0.30.1-0.1
Social response proportion0.50.51.01.0-0.50.5
Social responses0.20.30.40.5-0.60.6
Social time0.60.81.51.2-0.80.6
Soleus weight0.82.53.31.8-1.41.4
Bone: stiffness1.62.53.2-1.41.8-1.5
Tibialis anterior weight0.10.50.80.9-0.50.6
Time to tail flick, vehicle, before self-admin1.31.31.51.0-1.21.2
Time to tail flick, vehicle, after self-admin1.41.52.1-0.71.5-1.4
Time to tail flick, test, before self-admin0.40.40.70.3-0.80.7
Time to tail flick, test, after self-admin0.70.70.9-0.70.9-0.9
Delta time to tail flick, vehicle, before/after SA0.40.40.6-0.30.8-0.8
Delta time to tail flick, test, before/after SA1.71.61.9-0.91.4-1.4
Tibia length12.033.934.7-5.95.8-5.7
Ambulatory time before self-admin1.21.22.0-1.40.9-0.9
Ambulatory time after self-admin0.10.20.20.5-0.30.4
Bone: tissue strength0.30.30.60.8-0.30.3
Total heroin consumption3.94.55.1-1.92.3-2.2
Bone: trabecular number0.50.71.20.1-1.01.1
Bone: trabecular spacing0.40.50.8-0.20.9-0.9
Bone: trabecular thickness0.60.71.00.4-1.01.0
Bone: trabecular tissue density0.20.40.60.20.8-0.7
Water consumed over 24 hours0.40.50.70.3-0.80.8
Number of responses in last shaping day2.22.32.5-1.41.6-1.6