LOC102548046

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC102548046 0.14 0.07 0.0e+00 0.17 0.17 0.17 0.17 6.6e-19 9.9e-19 6.4e-19 7.5e-19
2 Liver mRNA stability LOC102548046 0.02 0.01 8.4e-03 0.01 0.01 -0 0.01 5.3e-02 5.2e-02 3.8e-01 6.7e-02
3 Brain gene expression LOC102548046 0.04 0.04 1.0e-03 0.02 0.03 0.03 0.02 2.5e-03 1.1e-03 1.3e-03 3.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.11.92.6-1.61.50.8
Area under the delay curve1.11.31.61.1-1.1-1.2
BMI with tail0.10.40.70.9-0.60.2
BMI without tail0.41.22.3-0.70.91.5
Body weight0.72.94.52.1-1.8-1.0
Weight adjusted by age0.00.00.1-0.10.1-0.3
Bone surface0.61.12.50.7-0.6-1.6
Bone volume0.10.20.5-0.00.2-0.7
Breakpoint value in progressive ratio session0.20.20.40.6-0.0-0.5
Number of licking bursts0.00.10.10.3-0.2-0.1
Context. condit. distance diff. score0.30.40.50.7-0.5-0.7
Locomotion velocity, session 10.60.61.00.5-1.0-0.8
Locomotion distance, session 13.03.84.2-1.91.92.1
Locomotion velocity, session 20.70.81.0-1.00.90.8
Locomotion distance, session 27.110.011.7-3.43.03.0
Locomotion velocity, session 30.10.10.10.2-0.4-0.2
Locomotion distance, session 30.20.30.7-0.10.30.8
Stereotopy head waving bouts, day 32.42.83.21.6-1.6-1.8
Stereotopy head waving duration, day 32.22.63.41.5-1.5-1.9
Locomotion velocity, session 70.00.00.1-0.20.20.0
Locomotion distance, session 73.34.24.9-2.02.21.9
Stereotopy head waving bouts, day 75.46.16.22.5-2.4-2.5
Stereotopy head waving duration, day 76.98.39.52.7-2.8-3.1
Locomotion velocity, session 80.60.71.40.5-0.7-1.2
Locomotion distance, session 82.84.14.6-2.02.11.9
Degree of sensitization distance3.53.64.6-2.12.11.4
Degree of sensitization stereotypy2.12.22.61.6-1.5-1.4
Conditioned locomotion0.30.30.4-0.50.60.5
Cocaine response after cond. corrected0.20.20.20.5-0.5-0.5
Cocaine response after cond. not corrected0.10.10.10.2-0.3-0.4
Cocaine response before conditioning0.20.20.5-0.70.40.0
Saline control response0.20.30.7-0.80.30.3
Bone: connectivity density1.42.23.5-1.91.60.8
Bone: cortical apparent density1.72.42.8-1.71.41.5
Bone: cortical area3.55.46.22.5-2.5-2.0
Bone: cortical porosity2.22.33.11.3-1.5-1.8
Bone: cortical porosity3.43.74.61.7-1.9-2.1
Bone: cortical thickness0.40.61.20.7-1.10.3
Bone: cortical thickness0.20.20.30.5-0.50.4
Bone: cortical tissue density1.82.52.9-1.71.51.6
Condit. Reinf. active minus inactive responses0.10.10.2-0.50.40.2
Condit. Reinf. active-inactive response ratio0.30.30.5-0.70.5-0.1
Condit. Reinf. active responses0.60.80.9-0.90.80.9
Condit. Reinf. inactive responses0.81.01.6-0.80.81.3
Incentive salience index mean0.00.00.0-0.20.10.0
Condit. Reinf. lever presses0.10.20.3-0.40.40.5
Condit. Reinf. active minus inactive responses0.10.20.40.2-0.4-0.6
Condit. Reinf. active-inactive response ratio0.10.10.20.2-0.4-0.4
Condit. Reinf. active responses0.20.20.4-0.60.50.2
Condit. Reinf. inactive responses0.91.21.5-1.21.20.9
Condit. Reinf. lever presses1.21.72.1-1.51.40.9
Condit. Reinf. lever reinforcers received0.30.50.6-0.80.80.4
Conditioned reinforcement - actives0.50.81.3-0.50.91.1
Conditioned reinforcement - inactives0.00.00.10.2-0.20.1
Conditioned locomotion1.21.62.1-1.01.31.4
Patch foraging indifference point 0 sec1.12.12.5-1.31.61.4
Patch foraging indifference point AUC1.11.52.1-1.41.21.0
Delay disc. indifference point, 0s delay0.91.01.20.7-1.1-1.1
Delay disc. indifference point, 16s delay0.10.10.2-0.30.50.3
Delay disc. indifference point, 2s delay0.40.40.50.7-0.6-0.6
Delay disc. indifference point, 24s delay0.00.00.1-0.30.1-0.1
Delay disc. indifference point, 4s delay1.41.51.71.1-1.2-1.3
Delay disc. indifference point, 8s delay4.35.15.52.2-2.2-2.4
Indifference point function ln k0.00.10.10.3-0.10.3
Indifference point function log k0.00.10.10.3-0.10.3
Patch foraging total patch changes 0 sec1.52.73.2-1.51.81.7
Patch foraging total patch changes 12 sec4.05.25.6-2.22.32.4
Patch foraging total patch changes 18 sec2.13.24.2-1.72.01.6
Patch foraging total patch changes 24 sec0.10.10.20.3-0.2-0.5
Patch foraging total patch changes 6 sec2.13.23.3-1.81.81.7
Patch foraging time to switch 0 sec0.20.50.50.7-0.7-0.7
Patch foraging water rate 0 sec0.61.31.6-1.01.21.2
Patch foraging water rate 12 sec0.30.61.0-0.40.71.0
Patch foraging water rate 18 sec0.30.40.6-0.50.80.6
Patch foraging water rate 24 sec1.72.32.9-1.31.71.6
Patch foraging water rate 6 sec0.20.30.6-0.30.30.8
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.40.10.1
Distance traveled before self-admin0.30.40.60.6-0.8-0.5
Distance traveled after self-admin1.31.62.3-1.21.51.1
Extensor digitorum longus weight1.45.47.3-2.02.32.7
Bone: elastic displacement1.51.82.4-1.31.11.6
Bone: elastic work0.20.30.50.6-0.7-0.3
Bone: endosteal estimation1.22.74.21.7-1.0-2.1
Bone: endosteal perimeter5.611.816.13.3-2.9-4.0
Epididymis fat weight0.00.10.20.40.00.2
Delta time in closed arm before/after self-admin0.00.00.0-0.10.2-0.1
Delta time in open arm before/after self-admin0.80.81.0-0.80.91.0
Diff in mean of infusions in LGA sessions1.01.21.61.2-0.7-1.3
Delay discount exponential model param1.51.72.0-1.31.21.4
Extinction: sum of active levers before priming0.10.10.1-0.20.30.3
Active lever presses in extinction session 60.10.10.1-0.20.30.4
Bone: final force1.32.12.51.3-1.6-1.4
Bone: final moment1.52.32.81.3-1.7-1.6
Food consumed during 24 hour testing period0.10.10.2-0.3-0.1-0.4
Glucose0.61.01.41.2-1.1-0.6
Heart weight0.61.01.71.3-1.1-0.2
Delay discount hyperbolic model param1.51.71.9-1.31.21.4
Intermittent access intake day 1-15 change0.20.40.60.6-0.7-0.6
Intermittent access intake escalation0.10.20.30.4-0.6-0.4
Intermittent access intake escalation 20.20.20.20.5-0.5-0.3
Intermitt. access day 1 inactive lever presses0.20.70.80.8-0.8-0.9
Intermitt. access day 15 inactive lever presses0.10.20.3-0.50.50.5
Intermitt. access escalation Index0.30.40.70.3-0.5-0.9
Intermittent access day 1 total infusions0.00.10.10.30.20.4
Intermittent access day 15 total infusions0.00.00.1-0.10.20.3
Intermittent access terminal intake (last 3 days)0.20.20.40.6-0.4-0.3
Intermittent access total infusions0.10.10.20.4-0.2-0.1
Intermittent access day 1 locomotion0.81.01.2-0.91.11.1
Intermittent access day 15 total locomotion0.00.00.10.10.00.4
Intermittent access total locomotion0.10.20.3-0.20.40.6
Intermittent access standard deviation4.18.510.13.2-2.9-2.6
Left kidney weight1.36.17.22.7-2.5-2.2
Right kidney weight0.31.42.01.4-1.3-0.8
Cocaine induced anxiety0.20.30.60.4-0.8-0.5
Post-drug Anxiety0.00.00.10.1-0.20.2
Baseline Anxiety0.30.30.5-0.40.70.5
Tail length0.00.00.0-0.00.1-0.0
Length with tail1.15.05.72.4-2.3-2.0
Length without tail2.68.59.93.2-3.0-2.5
Times rat made contact with spout0.30.30.4-0.50.70.4
Lifetime Intake0.10.10.20.5-0.3-0.2
Liver weight, left1.52.52.61.6-1.6-1.5
Liver weight, right1.22.02.21.4-1.4-1.5
Locomotor activity0.10.10.2-0.40.20.1
Locomotor testing distance0.00.10.2-0.30.4-0.1
Locomotor testing rearing0.81.62.3-1.51.30.9
Locomotion in novel chamber0.30.40.6-0.80.80.2
Locomotion in novel chamber post-restriction0.30.41.00.5-0.3-1.0
Fecal boli incidents, locomotor time 10.20.20.4-0.20.60.5
Change in fecal boli incidents, locomotor task0.00.00.0-0.10.10.2
Time >=10cm from walls, locomotor time 10.10.10.3-0.1-0.1-0.6
Bouts of movement, locomotor time 10.00.10.20.00.10.4
Total resting periods, locomotor time 10.10.10.3-0.10.20.5
Rest time, locomotor task time 10.30.40.70.8-0.7-0.3
Distance moved, locomotor task time 10.10.20.4-0.60.40.2
Vertical activity count, locomotor time 10.61.51.6-1.11.31.2
Time >=10cm from walls, locomotor time 20.20.30.6-0.80.40.5
Bouts of movement, locomotor time 20.20.20.30.6-0.4-0.5
Total resting periods, locomotor time 20.20.30.40.6-0.4-0.6
Rest time, locomotor task time 20.70.91.51.2-0.7-0.9
Distance moved, locomotor task time 20.40.40.7-0.80.30.7
Vertical activity count, locomotor time 20.30.40.9-0.40.50.9
Light reinforcement 12.04.86.0-1.92.22.4
Light reinforcement 20.20.20.5-0.20.40.7
Bone: marrow area1.22.74.21.7-1.0-2.1
Bone: maximum diameter9.016.918.34.2-3.9-4.3
Bone: maximum force1.32.42.51.5-1.6-1.6
Bone: maximum moment1.52.72.91.5-1.7-1.7
Mean time between licks in bursts0.00.00.1-0.2-0.2-0.3
Mean num. licks in bursts0.50.81.0-1.01.00.7
Cd content in liver1.41.51.8-1.11.31.4
Co content in liver0.00.00.0-0.10.10.0
Cu content in liver0.10.10.10.3-0.3-0.3
Fe content in liver0.00.10.20.00.1-0.4
K content in liver0.40.40.7-0.90.50.2
Mg content in liver2.93.04.2-2.01.71.3
Mn content in liver0.10.10.30.1-0.4-0.5
Na content in liver0.10.10.2-0.30.0-0.4
Rb content in liver1.92.22.6-1.61.51.4
Se content in liver1.01.11.6-1.31.10.7
Sr content in liver0.00.00.0-0.10.00.1
Zn content in liver0.10.10.20.4-0.3-0.1
Bone: minimum diameter3.46.17.92.3-2.3-2.8
Time in familiar zone, hab. session 10.10.10.2-0.10.20.4
Time in novel zone, hab. session 10.40.40.70.3-0.6-0.8
Total zone transitions, hab. session 12.23.14.0-2.01.71.5
Total locomotion distance, hab. session 12.02.93.1-1.81.71.7
Locomotion velocity, hab. session 12.83.94.0-2.01.92.0
Time in familiar zone, hab. session 20.10.10.2-0.10.30.4
Time in novel zone, hab. session 20.50.50.80.4-0.6-0.9
Total zone transitions, hab. session 26.88.79.6-3.13.02.7
Total locomotion distance, hab. session 27.09.19.5-3.03.03.1
Locomotion velocity, hab. session 27.19.59.7-3.13.03.1
Novel to familiar place preference ratio2.42.73.0-1.71.71.4
Novelty place preference1.81.92.3-1.51.51.2
Time in novel zone, NPP test2.22.42.7-1.61.71.3
Total zone transitions, NPP test4.76.87.4-2.72.62.5
Total locomotion distance, NPP test8.912.113.7-3.33.43.7
Locomotion velocity, NPP test7.510.611.9-3.13.23.4
Intraocular pressure0.40.61.0-0.31.00.7
Delta distance traveled before/after self-admin2.22.43.0-1.51.71.4
Delta ambulatory time before/after self-admin2.32.83.6-1.71.91.4
Parametrial fat weight0.00.00.00.20.10.2
Pavlov. Cond. lever latency0.20.30.5-0.50.70.2
Pavlov. Cond. magazine entry latency2.73.54.01.7-1.9-2.0
Pavlov. Cond. change in total contacts0.30.30.4-0.50.50.6
Pavlov. Cond. index score1.31.61.91.2-1.4-1.2
Pavlov. Cond. latency score1.72.22.61.5-1.6-1.3
Pavlov. Cond. lever contacts0.10.10.10.3-0.30.1
Pavlov. Cond. magazine entry number2.93.73.9-1.82.02.0
Pavlov. Cond. intertrial magazine entries2.22.62.9-1.61.71.5
Pavlov. Cond. lever-magazine prob. diff.0.81.01.20.9-1.1-1.0
Pavlov. Cond. response bias1.51.82.11.3-1.4-1.3
Pavlov. Cond. lever latency0.81.11.51.2-1.2-0.6
Pavlov. Cond. magazine entry latency0.30.30.4-0.30.60.7
Pavlov. Cond. change in total contacts0.91.41.8-1.11.31.1
Pavlov. Cond. index score0.60.81.1-0.81.00.8
Pavlov. Cond. latency score0.30.40.6-0.50.80.5
Pavlov. Cond. lever contacts1.31.82.3-1.41.51.0
Pavlov. Cond. magazine entry number0.40.50.60.5-0.8-0.8
Pavlov. Cond. intertrial magazine entries0.10.20.3-0.50.4-0.2
Pavlov. Cond. lever-magazine prob. diff.0.50.71.0-0.81.00.7
Pavlov. Cond. response bias1.31.82.2-1.21.51.3
Time in closed arm before self-admin0.10.10.10.3-0.30.2
Time in closed arm after self-admin0.70.81.11.0-0.8-0.8
Time in open arm before self-admin0.10.10.1-0.2-0.1-0.4
Time in open arm after self-admin0.70.80.9-1.01.00.7
Bone: periosteal estimation3.36.97.92.8-2.3-2.7
Bone: periosteal perimeter8.214.114.73.8-3.7-3.7
Bone: post-yield work0.20.30.5-0.60.70.4
Progressive ratio test 1 active lever presses0.20.20.3-0.40.60.5
Progressive ratio test 1 breakpoint0.20.20.3-0.40.50.5
Progressive ratio test 1 inactive lever presses0.00.00.00.2-0.2-0.2
Progressive ratio test 2 active lever presses0.50.60.7-0.60.70.9
Progressive ratio test 2 breakpoint0.40.40.6-0.50.60.8
Progressive ratio test 2 inactive lever presses0.00.00.00.1-0.10.2
Incentive Sensitization - Responses0.20.30.30.6-0.6-0.3
Incentive Sensitization - Breakpoint0.30.40.50.7-0.7-0.4
Sum of active levers in priming session hrs 5-60.00.00.10.2-0.1-0.3
Progressive ratio0.00.10.20.40.10.2
Food seeking constrained by brief footshock1.01.21.61.3-1.2-0.9
Seeking ratio, punishment vs. effort0.20.30.40.3-0.7-0.7
Retroperitoneal fat weight0.00.00.10.30.1-0.0
Reaction time number correct2.34.45.0-2.12.21.9
Reaction time mean minus median0.20.40.70.7-0.9-0.4
Reaction time mean minus median AUC0.41.01.40.8-1.2-0.9
Reaction time num false alarms0.00.00.10.10.10.3
Reaction time num false alarms AUC0.10.10.2-0.10.40.5
Reaction time trials correct on left2.34.45.0-2.12.21.9
Reaction time trials on left2.34.34.9-2.12.21.8
Reaction time mean0.00.00.0-0.0-0.1-0.1
Reaction time mean AUC0.00.00.0-0.20.10.2
Median of all reaction times0.00.00.0-0.10.0-0.1
Reaction time omissions1.11.52.01.4-1.3-1.0
Reaction time false alarm rate0.40.50.80.9-0.7-0.5
Reaction time premature initiation rate3.75.15.4-2.32.22.2
Reaction time premature initiations5.59.810.4-3.23.23.0
Std. dev. reaction times0.00.00.10.0-0.20.1
Reaction time trials completed2.34.34.9-2.12.21.8
Reaction time trials AUC2.85.36.0-2.32.52.1
Run reversals in cocaine runway, females0.40.41.01.0-0.5-0.2
Run reversals in cocaine runway, males0.10.10.20.4-0.10.3
Latency to leave start box in cocaine runway0.30.30.4-0.40.50.7
Latency to leave start box in cocaine runway, F0.60.70.8-0.80.80.9
Latency to leave start box in cocaine runway, M0.10.10.1-0.10.30.4
Std. dev. time between licks in bursts1.82.43.0-1.71.61.3
Total sessions with >9 infusions0.81.01.61.3-0.9-0.8
Short access day 1 total inactive lever presses1.52.02.11.4-1.4-1.4
Short access day 10 total inactive lever presses0.41.01.50.7-1.0-1.2
Short access day 1 total infusions0.71.01.21.1-1.0-0.9
Short access day 10 total infusions1.11.52.01.4-1.0-1.2
Short access total infusions0.30.40.60.8-0.5-0.5
Short access day 1 locomotion0.30.40.50.7-0.6-0.5
Short access day 10 total locomotion0.40.71.01.0-0.8-0.7
Short access total locomotion1.31.52.01.4-1.2-1.0
One hour access (0.3 mA shock)0.40.50.7-0.50.70.9
Compulsive drug intake0.40.50.6-0.70.70.8
One hour access (shock baseline)0.00.00.10.2-0.00.0
Social response proportion0.30.30.7-0.30.50.8
Social responses0.10.20.3-0.50.20.5
Social time0.30.40.8-0.40.50.9
Soleus weight0.61.72.8-1.11.01.7
Bone: stiffness1.42.32.61.5-1.6-1.5
Tibialis anterior weight0.20.60.9-0.60.70.9
Time to tail flick, vehicle, before self-admin0.30.30.4-0.70.40.6
Time to tail flick, vehicle, after self-admin1.31.72.41.6-1.4-0.9
Time to tail flick, test, before self-admin0.80.91.2-1.10.90.7
Time to tail flick, test, after self-admin2.32.42.61.6-1.6-1.5
Delta time to tail flick, vehicle, before/after SA0.90.91.31.1-0.8-0.8
Delta time to tail flick, test, before/after SA3.43.54.02.0-2.0-1.6
Tibia length14.439.842.86.5-6.5-5.9
Ambulatory time before self-admin0.81.21.51.2-1.2-0.8
Ambulatory time after self-admin0.60.71.0-0.81.00.7
Bone: tissue strength0.50.50.8-0.90.70.4
Total heroin consumption2.83.34.11.8-1.6-2.0
Bone: trabecular number0.20.40.7-0.90.60.1
Bone: trabecular spacing0.20.30.60.8-0.4-0.1
Bone: trabecular thickness0.30.40.8-0.90.70.2
Bone: trabecular tissue density0.10.20.40.6-0.30.1
Water consumed over 24 hours0.30.40.5-0.70.60.6
Number of responses in last shaping day1.61.82.11.4-1.4-1.2