LOC102547621

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver alternative TSS XR_010066508.1 0.05 0.03 2.5e-06 0.04 0.05 0.05 0.04 1.6e-05 2.8e-06 5.4e-06 9.7e-06
2 Adipose alternative TSS XR_010066509.1 0.02 0.02 7.9e-03 0.02 0.01 0.02 0.02 1.2e-03 2.1e-02 2.6e-03 2.7e-03
3 Liver gene expression LOC102547621 0.44 0.1 0.0e+00 0.58 0.56 0.57 0.58 4.5e-79 2.5e-74 9.0e-78 3.6e-78
4 Liver isoform ratio XR_010066506.1 0.18 0.08 0.0e+00 0.27 0.25 0.26 0.26 1.3e-29 2.0e-27 1.4e-28 6.0e-29

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.42.62.9-1.4-1.71.71.7
Area under the delay curve0.81.21.50.91.1-1.1-1.2
BMI with tail1.75.86.6-2.3-2.62.62.2
BMI without tail1.47.38.4-2.6-2.92.92.3
Body weight2.812.014.9-3.9-3.53.53.0
Weight adjusted by age0.00.10.1-0.3-0.10.1-0.3
Bone surface0.71.41.4-1.2-1.21.21.1
Bone volume0.71.31.5-1.0-1.21.21.1
Breakpoint value in progressive ratio session1.62.94.80.81.8-1.8-2.2
Number of licking bursts2.57.67.7-2.8-2.72.72.8
Context. condit. distance diff. score0.10.10.10.40.3-0.3-0.1
Locomotion velocity, session 10.20.20.4-0.60.5-0.5-0.4
Locomotion distance, session 10.10.10.3-0.6-0.00.0-0.1
Locomotion velocity, session 22.53.03.4-1.6-1.81.81.6
Locomotion distance, session 21.62.23.4-1.9-1.41.41.3
Locomotion velocity, session 30.10.10.1-0.30.3-0.3-0.1
Locomotion distance, session 31.51.72.5-1.6-1.21.21.0
Stereotopy head waving bouts, day 30.40.40.70.00.8-0.8-0.6
Stereotopy head waving duration, day 30.40.50.80.30.9-0.9-0.5
Locomotion velocity, session 70.10.10.10.30.3-0.3-0.3
Locomotion distance, session 70.10.10.3-0.6-0.30.30.2
Stereotopy head waving bouts, day 70.91.11.7-1.3-0.90.91.1
Stereotopy head waving duration, day 70.50.71.0-1.0-0.60.60.9
Locomotion velocity, session 80.00.10.1-0.10.3-0.3-0.1
Locomotion distance, session 80.10.10.3-0.5-0.10.10.2
Degree of sensitization distance0.91.01.01.01.0-1.0-0.9
Degree of sensitization stereotypy1.41.51.8-1.3-1.21.21.3
Conditioned locomotion0.10.10.2-0.00.4-0.4-0.4
Cocaine response after cond. corrected2.03.03.61.21.9-1.9-1.8
Cocaine response after cond. not corrected1.82.53.11.01.8-1.8-1.7
Cocaine response before conditioning0.91.11.2-1.0-1.11.11.1
Saline control response0.60.81.8-1.4-0.60.60.8
Bone: connectivity density0.71.21.4-0.8-1.21.21.1
Bone: cortical apparent density0.20.30.40.0-0.50.50.6
Bone: cortical area3.35.46.2-2.1-2.52.52.2
Bone: cortical porosity0.20.20.30.50.5-0.5-0.4
Bone: cortical porosity0.00.00.0-0.00.2-0.2-0.0
Bone: cortical thickness1.52.63.2-1.2-1.81.81.6
Bone: cortical thickness0.00.00.20.4-0.00.0-0.2
Bone: cortical tissue density0.10.20.30.1-0.40.40.5
Condit. Reinf. active minus inactive responses0.70.80.9-0.8-0.90.90.8
Condit. Reinf. active-inactive response ratio0.50.50.80.90.7-0.7-0.6
Condit. Reinf. active responses3.34.24.7-1.9-2.22.21.9
Condit. Reinf. inactive responses3.84.95.6-2.1-2.42.42.0
Incentive salience index mean4.45.66.0-2.5-2.42.42.2
Condit. Reinf. lever presses9.013.416.2-4.0-3.63.63.5
Condit. Reinf. active minus inactive responses0.71.01.1-0.9-1.01.01.1
Condit. Reinf. active-inactive response ratio0.10.10.2-0.1-0.40.40.3
Condit. Reinf. active responses2.43.53.6-1.8-1.91.91.8
Condit. Reinf. inactive responses3.45.05.3-2.1-2.32.32.3
Condit. Reinf. lever presses3.65.25.6-2.0-2.42.42.3
Condit. Reinf. lever reinforcers received2.94.04.1-2.0-2.02.02.0
Conditioned reinforcement - actives0.10.20.4-0.40.6-0.60.4
Conditioned reinforcement - inactives0.20.51.00.11.0-1.00.2
Conditioned locomotion0.10.20.2-0.30.5-0.5-0.3
Patch foraging indifference point 0 sec0.10.30.3-0.50.5-0.5-0.5
Patch foraging indifference point AUC3.78.810.2-3.2-3.03.02.7
Delay disc. indifference point, 0s delay1.51.61.91.01.4-1.4-1.3
Delay disc. indifference point, 16s delay1.42.02.51.01.6-1.6-1.5
Delay disc. indifference point, 2s delay0.10.10.3-0.3-0.30.30.5
Delay disc. indifference point, 24s delay0.10.20.20.50.3-0.3-0.5
Delay disc. indifference point, 4s delay0.20.20.50.40.4-0.4-0.7
Delay disc. indifference point, 8s delay0.00.00.10.0-0.00.0-0.2
Indifference point function ln k1.13.33.61.91.8-1.8-1.7
Indifference point function log k1.13.33.61.91.8-1.8-1.7
Patch foraging total patch changes 0 sec0.10.20.8-0.90.1-0.1-0.1
Patch foraging total patch changes 12 sec1.62.12.4-1.5-1.41.41.4
Patch foraging total patch changes 18 sec0.20.50.7-0.9-0.70.70.5
Patch foraging total patch changes 24 sec0.51.82.7-1.7-1.21.21.2
Patch foraging total patch changes 6 sec1.11.83.6-1.9-1.11.11.1
Patch foraging time to switch 0 sec0.72.63.81.91.5-1.5-1.4
Patch foraging water rate 0 sec0.41.42.4-1.5-1.11.10.9
Patch foraging water rate 12 sec0.00.00.0-0.20.2-0.2-0.1
Patch foraging water rate 18 sec0.40.81.5-0.7-0.80.81.2
Patch foraging water rate 24 sec0.10.10.20.2-0.20.20.4
Patch foraging water rate 6 sec1.01.52.0-1.3-1.01.01.4
Seeking ratio, delayed vs. immediate footshock3.24.65.0-2.1-2.22.22.0
Distance traveled before self-admin2.24.87.4-2.7-2.02.02.0
Distance traveled after self-admin2.23.84.9-1.9-1.81.82.2
Extensor digitorum longus weight4.919.522.7-4.8-4.34.34.2
Bone: elastic displacement4.96.28.52.92.2-2.2-2.5
Bone: elastic work1.01.43.31.80.8-0.8-1.0
Bone: endosteal estimation0.81.92.9-1.7-1.31.31.1
Bone: endosteal perimeter0.71.72.9-1.7-1.21.20.9
Epididymis fat weight0.31.31.8-1.0-1.31.30.8
Delta time in closed arm before/after self-admin1.00.91.3-0.5-1.21.20.9
Delta time in open arm before/after self-admin0.50.61.00.41.0-1.0-0.6
Diff in mean of infusions in LGA sessions0.00.00.00.2-0.10.1-0.1
Delay discount exponential model param0.71.01.4-0.8-1.01.01.2
Extinction: sum of active levers before priming2.53.84.61.82.1-2.1-1.7
Active lever presses in extinction session 60.50.50.80.70.6-0.6-0.9
Bone: final force2.23.53.6-1.9-1.91.91.8
Bone: final moment1.93.03.2-1.7-1.81.81.7
Food consumed during 24 hour testing period0.51.11.4-1.2-1.01.01.0
Glucose2.13.43.7-1.9-1.91.91.6
Heart weight0.50.81.1-0.9-1.01.00.5
Delay discount hyperbolic model param0.50.71.0-0.6-0.80.81.0
Intermittent access intake day 1-15 change0.31.71.9-1.1-1.41.41.2
Intermittent access intake escalation0.31.61.9-1.1-1.41.41.2
Intermittent access intake escalation 21.83.14.3-1.4-1.81.82.1
Intermitt. access day 1 inactive lever presses0.11.62.0-1.2-1.41.40.8
Intermitt. access day 15 inactive lever presses0.00.20.3-0.6-0.50.50.3
Intermitt. access escalation Index0.20.50.7-0.8-0.80.80.4
Intermittent access day 1 total infusions1.44.15.61.52.4-2.4-1.7
Intermittent access day 15 total infusions0.00.00.1-0.20.1-0.10.2
Intermittent access terminal intake (last 3 days)0.20.30.7-0.70.1-0.10.8
Intermittent access total infusions0.20.20.3-0.30.6-0.60.2
Intermittent access day 1 locomotion1.93.64.41.52.1-2.1-1.8
Intermittent access day 15 total locomotion0.62.53.01.31.7-1.7-1.5
Intermittent access total locomotion1.82.12.81.31.7-1.7-1.1
Intermittent access standard deviation0.10.40.6-0.8-0.60.60.7
Left kidney weight0.21.52.5-1.6-1.11.10.9
Right kidney weight0.21.21.5-1.2-1.21.20.7
Cocaine induced anxiety0.10.10.3-0.10.3-0.30.6
Post-drug Anxiety0.60.71.4-1.0-0.40.41.2
Baseline Anxiety0.50.81.0-0.8-1.01.00.7
Tail length1.37.28.0-2.8-2.72.72.5
Length with tail0.94.26.8-2.6-1.91.91.7
Length without tail0.00.20.2-0.40.5-0.5-0.3
Times rat made contact with spout0.70.81.0-0.7-0.90.91.0
Lifetime Intake0.30.40.8-0.40.9-0.90.1
Liver weight, left0.10.10.20.10.3-0.3-0.5
Liver weight, right0.50.81.11.01.1-1.1-0.4
Locomotor activity0.00.00.0-0.1-0.10.10.1
Locomotor testing distance0.10.30.40.20.6-0.6-0.5
Locomotor testing rearing0.31.31.8-1.3-0.90.91.3
Locomotion in novel chamber0.10.20.40.70.3-0.3-0.1
Locomotion in novel chamber post-restriction0.92.83.3-1.2-1.81.81.7
Fecal boli incidents, locomotor time 10.51.21.81.30.8-0.8-1.3
Change in fecal boli incidents, locomotor task0.30.30.7-0.8-0.50.50.3
Time >=10cm from walls, locomotor time 10.10.10.3-0.20.3-0.3-0.6
Bouts of movement, locomotor time 11.11.41.81.31.2-1.2-1.0
Total resting periods, locomotor time 11.51.72.61.61.3-1.3-1.1
Rest time, locomotor task time 10.30.41.61.30.1-0.1-0.2
Distance moved, locomotor task time 10.31.02.7-1.6-0.60.60.7
Vertical activity count, locomotor time 10.10.41.5-1.2-0.00.00.1
Time >=10cm from walls, locomotor time 20.00.00.1-0.2-0.20.2-0.1
Bouts of movement, locomotor time 20.20.60.8-0.9-0.70.70.8
Total resting periods, locomotor time 20.00.20.3-0.5-0.30.30.5
Rest time, locomotor task time 20.40.70.91.00.8-0.8-0.7
Distance moved, locomotor task time 20.91.11.4-0.8-1.21.21.1
Vertical activity count, locomotor time 20.20.50.8-0.9-0.80.80.5
Light reinforcement 10.20.72.5-1.6-0.40.40.4
Light reinforcement 20.20.40.5-0.70.7-0.7-0.4
Bone: marrow area0.92.23.1-1.8-1.51.51.3
Bone: maximum diameter2.75.45.9-2.3-2.42.42.1
Bone: maximum force3.67.27.5-2.7-2.72.72.6
Bone: maximum moment3.26.06.4-2.4-2.52.52.4
Mean time between licks in bursts0.10.50.50.70.6-0.6-0.7
Mean num. licks in bursts1.23.33.81.91.8-1.8-1.7
Cd content in liver1.01.11.5-1.2-0.90.91.0
Co content in liver0.60.70.90.61.0-1.0-0.8
Cu content in liver1.41.62.01.41.2-1.2-1.2
Fe content in liver1.01.31.70.81.3-1.3-0.9
K content in liver0.50.50.60.40.8-0.8-0.8
Mg content in liver1.31.41.61.11.2-1.2-1.3
Mn content in liver1.61.82.0-1.3-1.41.41.2
Na content in liver0.91.11.31.11.1-1.1-0.8
Rb content in liver5.26.06.52.52.6-2.6-2.2
Se content in liver3.13.64.0-1.8-1.91.92.0
Sr content in liver0.20.10.3-0.5-0.40.4-0.0
Zn content in liver0.10.10.1-0.1-0.40.40.1
Bone: minimum diameter0.00.00.00.2-0.00.0-0.1
Time in familiar zone, hab. session 10.10.10.40.6-0.20.20.2
Time in novel zone, hab. session 12.62.93.71.11.8-1.8-1.9
Total zone transitions, hab. session 10.00.00.00.0-0.10.1-0.1
Total locomotion distance, hab. session 10.60.81.2-0.5-1.11.10.9
Locomotion velocity, hab. session 12.02.83.3-1.4-1.81.81.6
Time in familiar zone, hab. session 20.30.30.80.90.3-0.3-0.4
Time in novel zone, hab. session 21.82.02.60.91.6-1.6-1.4
Total zone transitions, hab. session 20.30.40.7-0.8-0.60.60.4
Total locomotion distance, hab. session 20.81.01.1-1.0-1.11.10.9
Locomotion velocity, hab. session 21.11.41.5-1.2-1.21.21.1
Novel to familiar place preference ratio3.84.95.71.92.3-2.3-2.4
Novelty place preference4.86.26.82.22.6-2.6-2.6
Time in novel zone, NPP test6.17.58.02.42.8-2.8-2.8
Total zone transitions, NPP test0.30.51.0-1.0-0.60.60.5
Total locomotion distance, NPP test1.31.82.6-1.6-1.31.31.0
Locomotion velocity, NPP test1.82.63.4-1.8-1.61.61.4
Intraocular pressure1.52.53.8-2.0-1.41.41.4
Delta distance traveled before/after self-admin0.10.10.30.1-0.10.10.5
Delta ambulatory time before/after self-admin0.10.20.40.60.5-0.50.1
Parametrial fat weight0.20.40.80.30.5-0.5-0.9
Pavlov. Cond. lever latency6.98.710.23.22.9-2.9-2.8
Pavlov. Cond. magazine entry latency0.60.81.0-0.8-1.01.00.7
Pavlov. Cond. change in total contacts2.83.03.5-1.9-1.71.71.6
Pavlov. Cond. index score3.64.64.7-2.2-2.22.22.0
Pavlov. Cond. latency score3.24.14.4-2.1-2.02.01.9
Pavlov. Cond. lever contacts6.67.98.9-3.0-2.82.82.7
Pavlov. Cond. magazine entry number1.01.21.50.91.2-1.2-0.9
Pavlov. Cond. intertrial magazine entries0.20.30.3-0.5-0.60.60.5
Pavlov. Cond. lever-magazine prob. diff.3.84.75.0-2.1-2.22.22.1
Pavlov. Cond. response bias4.45.45.7-2.4-2.42.42.1
Pavlov. Cond. lever latency3.44.75.21.92.3-2.3-2.3
Pavlov. Cond. magazine entry latency0.10.10.20.40.3-0.3-0.1
Pavlov. Cond. change in total contacts0.92.22.9-0.9-1.71.71.5
Pavlov. Cond. index score0.50.81.0-0.5-1.01.01.0
Pavlov. Cond. latency score0.71.11.3-0.6-1.11.11.1
Pavlov. Cond. lever contacts2.43.64.0-1.6-2.02.02.0
Pavlov. Cond. magazine entry number0.40.50.80.30.8-0.8-0.9
Pavlov. Cond. intertrial magazine entries0.10.20.3-0.6-0.50.50.3
Pavlov. Cond. lever-magazine prob. diff.0.60.91.1-0.5-1.01.01.0
Pavlov. Cond. response bias1.52.12.4-1.1-1.51.51.5
Time in closed arm before self-admin0.30.50.70.90.6-0.6-0.7
Time in closed arm after self-admin0.10.10.20.4-0.30.30.1
Time in open arm before self-admin0.50.61.3-1.1-0.60.60.3
Time in open arm after self-admin0.30.30.9-1.0-0.20.20.4
Bone: periosteal estimation1.84.34.6-2.1-2.12.11.9
Bone: periosteal perimeter0.40.91.3-1.1-0.90.90.7
Bone: post-yield work1.52.74.1-2.0-1.51.51.4
Progressive ratio test 1 active lever presses0.81.32.50.31.6-1.6-0.4
Progressive ratio test 1 breakpoint0.61.12.10.21.4-1.4-0.3
Progressive ratio test 1 inactive lever presses0.10.41.2-1.1-0.10.10.5
Progressive ratio test 2 active lever presses1.52.13.80.51.9-1.9-0.7
Progressive ratio test 2 breakpoint1.72.23.90.52.0-2.0-0.8
Progressive ratio test 2 inactive lever presses0.00.10.2-0.50.3-0.30.4
Incentive Sensitization - Responses0.20.61.2-0.01.1-1.10.1
Incentive Sensitization - Breakpoint0.30.61.30.11.1-1.10.0
Sum of active levers in priming session hrs 5-64.94.65.51.82.2-2.2-2.4
Progressive ratio0.00.00.00.20.1-0.1-0.2
Food seeking constrained by brief footshock5.26.610.2-3.2-2.12.12.7
Seeking ratio, punishment vs. effort1.22.63.8-2.0-1.31.31.8
Retroperitoneal fat weight0.31.11.91.40.8-0.8-1.1
Reaction time number correct0.00.00.0-0.20.1-0.1-0.1
Reaction time mean minus median0.21.42.1-0.4-1.51.51.1
Reaction time mean minus median AUC0.32.02.5-0.9-1.61.61.5
Reaction time num false alarms0.10.20.3-0.2-0.40.40.5
Reaction time num false alarms AUC0.30.70.8-0.8-0.80.80.9
Reaction time trials correct on left0.00.00.0-0.20.1-0.1-0.1
Reaction time trials on left0.00.00.1-0.10.1-0.1-0.2
Reaction time mean0.30.61.91.40.3-0.3-0.6
Reaction time mean AUC0.30.72.21.50.4-0.4-0.6
Median of all reaction times1.32.13.92.01.1-1.1-1.4
Reaction time omissions1.52.53.61.71.3-1.3-1.9
Reaction time false alarm rate0.10.10.2-0.1-0.30.30.4
Reaction time premature initiation rate1.32.03.21.81.1-1.1-1.5
Reaction time premature initiations0.51.62.41.51.0-1.0-1.4
Std. dev. reaction times0.10.30.60.4-0.70.70.3
Reaction time trials completed0.00.00.1-0.10.1-0.1-0.2
Reaction time trials AUC0.00.00.1-0.10.1-0.1-0.3
Run reversals in cocaine runway, females0.10.10.10.3-0.30.30.0
Run reversals in cocaine runway, males0.10.10.10.30.3-0.3-0.2
Latency to leave start box in cocaine runway0.81.11.3-1.0-1.11.10.8
Latency to leave start box in cocaine runway, F0.20.20.60.20.3-0.3-0.8
Latency to leave start box in cocaine runway, M3.13.03.4-1.9-1.71.71.7
Std. dev. time between licks in bursts0.20.40.50.70.7-0.7-0.5
Total sessions with >9 infusions0.40.40.7-0.50.9-0.90.2
Short access day 1 total inactive lever presses0.20.51.4-1.2-0.30.30.6
Short access day 10 total inactive lever presses0.21.71.8-1.2-1.41.41.3
Short access day 1 total infusions0.20.40.6-0.70.8-0.80.2
Short access day 10 total infusions0.50.71.30.11.1-1.1-0.6
Short access total infusions0.81.12.1-0.11.5-1.5-0.4
Short access day 1 locomotion1.52.53.01.11.7-1.7-1.6
Short access day 10 total locomotion0.21.01.41.21.0-1.0-0.7
Short access total locomotion0.71.11.40.71.2-1.2-1.0
One hour access (0.3 mA shock)0.20.30.5-0.30.7-0.7-0.1
Compulsive drug intake0.20.20.5-0.1-0.70.70.2
One hour access (shock baseline)0.20.61.1-0.21.1-1.1-0.4
Social response proportion1.62.13.01.71.1-1.1-1.7
Social responses0.60.80.9-1.0-1.01.00.7
Social time0.00.00.10.10.1-0.1-0.3
Soleus weight0.20.50.9-0.10.7-0.7-0.9
Bone: stiffness4.88.89.0-3.0-3.03.02.9
Tibialis anterior weight7.425.631.6-5.6-4.94.94.7
Time to tail flick, vehicle, before self-admin0.60.71.31.20.7-0.7-0.8
Time to tail flick, vehicle, after self-admin0.00.10.1-0.1-0.30.30.3
Time to tail flick, test, before self-admin0.30.40.7-0.7-0.40.40.9
Time to tail flick, test, after self-admin2.32.43.3-1.0-1.81.81.3
Delta time to tail flick, vehicle, before/after SA0.40.40.5-0.7-0.50.50.7
Delta time to tail flick, test, before/after SA0.10.20.30.3-0.50.5-0.1
Tibia length0.00.10.2-0.40.3-0.3-0.4
Ambulatory time before self-admin1.13.25.5-2.4-1.61.61.6
Ambulatory time after self-admin0.71.11.6-1.3-0.80.81.1
Bone: tissue strength0.20.20.3-0.4-0.60.60.4
Total heroin consumption1.82.12.70.91.6-1.6-1.5
Bone: trabecular number1.12.02.3-1.2-1.51.51.5
Bone: trabecular spacing0.00.00.1-0.1-0.30.30.2
Bone: trabecular thickness0.10.20.30.50.3-0.3-0.4
Bone: trabecular tissue density3.05.26.3-2.5-2.22.22.2
Water consumed over 24 hours0.71.41.7-1.2-1.11.11.3
Number of responses in last shaping day0.91.12.0-0.01.1-1.1-1.4