LOC102547621

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver alternative TSS XR_010066508.1 0.05 0.03 2.5e-06 0.04 0.05 0.05 0.04 1.6e-05 2.8e-06 5.4e-06 9.0e-06
2 Adipose alternative TSS XR_010066509.1 0.02 0.02 7.9e-03 0.02 0.01 0.02 0.02 1.2e-03 2.1e-02 2.6e-03 2.7e-03
3 Liver gene expression LOC102547621 0.44 0.1 0.0e+00 0.58 0.56 0.57 0.58 4.5e-79 2.5e-74 1.0e-77 3.8e-78
4 Liver isoform ratio XR_010066506.1 0.18 0.08 0.0e+00 0.27 0.25 0.26 0.26 1.3e-29 2.0e-27 1.4e-28 5.7e-29

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.52.62.9-1.41.7-1.7-1.7
Area under the delay curve1.01.21.50.9-1.11.11.2
BMI with tail1.75.86.6-2.32.6-2.6-2.2
BMI without tail2.47.38.4-2.62.9-2.9-2.3
Body weight2.812.014.9-3.93.5-3.5-3.0
Weight adjusted by age0.00.10.1-0.30.1-0.10.3
Bone surface0.81.41.4-1.21.2-1.2-1.1
Bone volume0.71.31.5-1.01.2-1.2-1.1
Breakpoint value in progressive ratio session2.42.94.80.8-1.81.82.2
Number of licking bursts4.67.67.7-2.82.7-2.7-2.8
Context. condit. distance diff. score0.10.10.10.4-0.30.30.1
Locomotion velocity, session 10.20.20.4-0.6-0.50.50.4
Locomotion distance, session 10.10.10.3-0.60.0-0.00.1
Locomotion velocity, session 22.53.03.4-1.61.8-1.8-1.6
Locomotion distance, session 21.62.23.4-1.91.4-1.4-1.3
Locomotion velocity, session 30.10.10.1-0.3-0.30.30.1
Locomotion distance, session 31.51.72.5-1.61.2-1.2-1.0
Stereotopy head waving bouts, day 30.40.40.70.0-0.80.80.6
Stereotopy head waving duration, day 30.40.50.80.3-0.90.90.5
Locomotion velocity, session 70.10.10.10.3-0.30.30.3
Locomotion distance, session 70.10.10.3-0.60.3-0.3-0.2
Stereotopy head waving bouts, day 71.01.11.7-1.30.9-0.9-1.1
Stereotopy head waving duration, day 70.60.71.0-1.00.6-0.6-0.9
Locomotion velocity, session 80.00.10.1-0.1-0.30.30.1
Locomotion distance, session 80.10.10.3-0.50.1-0.1-0.2
Degree of sensitization distance0.91.01.01.0-1.01.00.9
Degree of sensitization stereotypy1.41.51.8-1.31.2-1.2-1.3
Conditioned locomotion0.10.10.2-0.0-0.40.40.4
Cocaine response after cond. corrected2.53.03.61.2-1.91.91.8
Cocaine response after cond. not corrected2.22.53.11.0-1.81.81.7
Cocaine response before conditioning1.01.11.2-1.01.1-1.1-1.1
Saline control response0.60.81.8-1.40.6-0.6-0.8
Bone: connectivity density0.71.21.4-0.81.2-1.2-1.1
Bone: cortical apparent density0.20.30.40.00.5-0.5-0.6
Bone: cortical area3.55.46.2-2.12.5-2.5-2.2
Bone: cortical porosity0.20.20.30.5-0.50.50.4
Bone: cortical porosity0.00.00.0-0.0-0.20.20.0
Bone: cortical thickness1.52.63.2-1.21.8-1.8-1.6
Bone: cortical thickness0.00.00.20.40.0-0.00.2
Bone: cortical tissue density0.10.20.30.10.4-0.4-0.5
Condit. Reinf. active minus inactive responses0.70.80.9-0.80.9-0.9-0.8
Condit. Reinf. active-inactive response ratio0.50.50.80.9-0.70.70.6
Condit. Reinf. active responses3.44.24.7-1.92.2-2.2-1.9
Condit. Reinf. inactive responses4.04.95.6-2.12.4-2.4-2.0
Incentive salience index mean4.65.66.0-2.52.4-2.4-2.2
Condit. Reinf. lever presses9.613.416.2-4.03.6-3.6-3.5
Condit. Reinf. active minus inactive responses0.81.01.1-0.91.0-1.0-1.1
Condit. Reinf. active-inactive response ratio0.10.10.2-0.10.4-0.4-0.3
Condit. Reinf. active responses2.53.53.6-1.81.9-1.9-1.8
Condit. Reinf. inactive responses3.85.05.3-2.12.3-2.3-2.3
Condit. Reinf. lever presses3.75.25.6-2.02.4-2.4-2.3
Condit. Reinf. lever reinforcers received2.94.04.1-2.02.0-2.0-2.0
Conditioned reinforcement - actives0.10.20.4-0.4-0.60.6-0.4
Conditioned reinforcement - inactives0.40.51.00.1-1.01.0-0.2
Conditioned locomotion0.10.20.2-0.3-0.50.50.3
Patch foraging indifference point 0 sec0.10.30.3-0.5-0.50.50.5
Patch foraging indifference point AUC6.18.810.2-3.23.0-3.0-2.7
Delay disc. indifference point, 0s delay1.51.61.91.0-1.41.41.3
Delay disc. indifference point, 16s delay1.82.02.51.0-1.61.61.5
Delay disc. indifference point, 2s delay0.10.10.3-0.30.3-0.3-0.5
Delay disc. indifference point, 24s delay0.10.20.20.5-0.30.30.5
Delay disc. indifference point, 4s delay0.20.20.50.4-0.40.40.7
Delay disc. indifference point, 8s delay0.00.00.10.00.0-0.00.2
Indifference point function ln k1.93.33.61.9-1.81.81.7
Indifference point function log k1.93.33.61.9-1.81.81.7
Patch foraging total patch changes 0 sec0.10.20.8-0.9-0.10.10.1
Patch foraging total patch changes 12 sec1.62.12.4-1.51.4-1.4-1.4
Patch foraging total patch changes 18 sec0.30.50.7-0.90.7-0.7-0.5
Patch foraging total patch changes 24 sec1.11.82.7-1.71.2-1.2-1.2
Patch foraging total patch changes 6 sec1.21.83.6-1.91.1-1.1-1.1
Patch foraging time to switch 0 sec1.32.63.81.9-1.51.51.4
Patch foraging water rate 0 sec0.61.42.4-1.51.1-1.1-0.9
Patch foraging water rate 12 sec0.00.00.0-0.2-0.20.20.1
Patch foraging water rate 18 sec0.50.81.5-0.70.8-0.8-1.2
Patch foraging water rate 24 sec0.10.10.20.20.2-0.2-0.4
Patch foraging water rate 6 sec1.01.52.0-1.31.0-1.0-1.4
Seeking ratio, delayed vs. immediate footshock3.84.65.0-2.12.2-2.2-2.0
Distance traveled before self-admin3.74.87.4-2.72.0-2.0-2.0
Distance traveled after self-admin3.13.84.9-1.91.8-1.8-2.2
Extensor digitorum longus weight5.019.522.7-4.84.3-4.3-4.2
Bone: elastic displacement5.36.28.52.9-2.22.22.5
Bone: elastic work1.01.43.31.8-0.80.81.0
Bone: endosteal estimation0.91.92.9-1.71.3-1.3-1.1
Bone: endosteal perimeter0.81.72.9-1.71.2-1.2-0.9
Epididymis fat weight0.41.31.8-1.01.3-1.3-0.8
Delta time in closed arm before/after self-admin1.00.91.3-0.51.2-1.2-0.9
Delta time in open arm before/after self-admin0.60.61.00.4-1.01.00.6
Diff in mean of infusions in LGA sessions0.00.00.00.20.1-0.10.1
Delay discount exponential model param0.91.01.4-0.81.0-1.0-1.2
Extinction: sum of active levers before priming3.43.84.61.8-2.12.11.7
Active lever presses in extinction session 60.50.50.80.7-0.60.60.9
Bone: final force2.23.53.6-1.91.9-1.9-1.8
Bone: final moment1.93.03.2-1.71.8-1.8-1.7
Food consumed during 24 hour testing period0.81.11.4-1.21.0-1.0-1.0
Glucose2.23.43.7-1.91.9-1.9-1.6
Heart weight0.50.81.1-0.91.0-1.0-0.5
Delay discount hyperbolic model param0.60.71.0-0.60.8-0.8-1.0
Intermittent access intake day 1-15 change0.81.71.9-1.11.4-1.4-1.2
Intermittent access intake escalation0.81.61.9-1.11.4-1.4-1.2
Intermittent access intake escalation 22.73.14.3-1.41.8-1.8-2.1
Intermitt. access day 1 inactive lever presses0.41.62.0-1.21.4-1.4-0.8
Intermitt. access day 15 inactive lever presses0.10.20.3-0.60.5-0.5-0.3
Intermitt. access escalation Index0.40.50.7-0.80.8-0.8-0.4
Intermittent access day 1 total infusions2.54.15.61.5-2.42.41.7
Intermittent access day 15 total infusions0.00.00.1-0.2-0.10.1-0.2
Intermittent access terminal intake (last 3 days)0.20.30.7-0.7-0.10.1-0.8
Intermittent access total infusions0.20.20.3-0.3-0.60.6-0.2
Intermittent access day 1 locomotion2.83.64.41.5-2.12.11.8
Intermittent access day 15 total locomotion1.42.53.01.3-1.71.71.5
Intermittent access total locomotion1.82.12.81.3-1.71.71.1
Intermittent access standard deviation0.20.40.6-0.80.6-0.6-0.7
Left kidney weight0.31.52.5-1.61.1-1.1-0.9
Right kidney weight0.31.21.5-1.21.2-1.2-0.7
Cocaine induced anxiety0.10.10.3-0.1-0.30.3-0.6
Post-drug Anxiety0.70.71.4-1.00.4-0.4-1.2
Baseline Anxiety0.70.81.0-0.81.0-1.0-0.7
Tail length1.97.28.0-2.82.7-2.7-2.5
Length with tail1.04.26.8-2.61.9-1.9-1.7
Length without tail0.10.20.2-0.4-0.50.50.3
Times rat made contact with spout0.70.81.0-0.70.9-0.9-1.0
Lifetime Intake0.30.40.8-0.4-0.90.9-0.1
Liver weight, left0.10.10.20.1-0.30.30.5
Liver weight, right0.50.81.11.0-1.11.10.4
Locomotor activity0.00.00.0-0.10.1-0.1-0.1
Locomotor testing distance0.20.30.40.2-0.60.60.5
Locomotor testing rearing0.61.31.8-1.30.9-0.9-1.3
Locomotion in novel chamber0.10.20.40.7-0.30.30.1
Locomotion in novel chamber post-restriction1.72.83.3-1.21.8-1.8-1.7
Fecal boli incidents, locomotor time 10.81.21.81.3-0.80.81.3
Change in fecal boli incidents, locomotor task0.30.30.7-0.80.5-0.5-0.3
Time >=10cm from walls, locomotor time 10.10.10.3-0.2-0.30.30.6
Bouts of movement, locomotor time 11.31.41.81.3-1.21.21.0
Total resting periods, locomotor time 11.61.72.61.6-1.31.31.1
Rest time, locomotor task time 10.30.41.61.3-0.10.10.2
Distance moved, locomotor task time 10.71.02.7-1.60.6-0.6-0.7
Vertical activity count, locomotor time 10.20.41.5-1.20.0-0.0-0.1
Time >=10cm from walls, locomotor time 20.00.00.1-0.20.2-0.20.1
Bouts of movement, locomotor time 20.40.60.8-0.90.7-0.7-0.8
Total resting periods, locomotor time 20.10.20.3-0.50.3-0.3-0.5
Rest time, locomotor task time 20.50.70.91.0-0.80.80.7
Distance moved, locomotor task time 21.01.11.4-0.81.2-1.2-1.1
Vertical activity count, locomotor time 20.40.50.8-0.90.8-0.8-0.5
Light reinforcement 10.30.72.5-1.60.4-0.4-0.4
Light reinforcement 20.30.40.5-0.7-0.70.70.4
Bone: marrow area1.02.23.1-1.81.5-1.5-1.3
Bone: maximum diameter2.95.45.9-2.32.4-2.4-2.1
Bone: maximum force4.17.27.5-2.72.7-2.7-2.6
Bone: maximum moment3.46.06.4-2.42.5-2.5-2.4
Mean time between licks in bursts0.20.50.50.7-0.60.60.7
Mean num. licks in bursts2.13.33.81.9-1.81.81.7
Cd content in liver1.01.11.5-1.20.9-0.9-1.0
Co content in liver0.60.70.90.6-1.01.00.8
Cu content in liver1.41.62.01.4-1.21.21.2
Fe content in liver1.01.31.70.8-1.31.30.9
K content in liver0.50.50.60.4-0.80.80.8
Mg content in liver1.41.41.61.1-1.21.21.3
Mn content in liver1.61.82.0-1.31.4-1.4-1.2
Na content in liver1.01.11.31.1-1.11.10.8
Rb content in liver5.26.06.52.5-2.62.62.2
Se content in liver3.13.64.0-1.81.9-1.9-2.0
Sr content in liver0.20.10.3-0.50.4-0.40.0
Zn content in liver0.10.10.1-0.10.4-0.4-0.1
Bone: minimum diameter0.00.00.00.20.0-0.00.1
Time in familiar zone, hab. session 10.10.10.40.60.2-0.2-0.2
Time in novel zone, hab. session 12.92.93.71.1-1.81.81.9
Total zone transitions, hab. session 10.00.00.00.00.1-0.10.1
Total locomotion distance, hab. session 10.60.81.2-0.51.1-1.1-0.9
Locomotion velocity, hab. session 12.02.83.3-1.41.8-1.8-1.6
Time in familiar zone, hab. session 20.30.30.80.9-0.30.30.4
Time in novel zone, hab. session 22.02.02.60.9-1.61.61.4
Total zone transitions, hab. session 20.30.40.7-0.80.6-0.6-0.4
Total locomotion distance, hab. session 20.81.01.1-1.01.1-1.1-0.9
Locomotion velocity, hab. session 21.11.41.5-1.21.2-1.2-1.1
Novel to familiar place preference ratio4.54.95.71.9-2.32.32.4
Novelty place preference5.86.26.82.2-2.62.62.6
Time in novel zone, NPP test7.07.58.02.4-2.82.82.8
Total zone transitions, NPP test0.30.51.0-1.00.6-0.6-0.5
Total locomotion distance, NPP test1.31.82.6-1.61.3-1.3-1.0
Locomotion velocity, NPP test1.92.63.4-1.81.6-1.6-1.4
Intraocular pressure1.72.53.8-2.01.4-1.4-1.4
Delta distance traveled before/after self-admin0.10.10.30.10.1-0.1-0.5
Delta ambulatory time before/after self-admin0.20.20.40.6-0.50.5-0.1
Parametrial fat weight0.20.40.80.3-0.50.50.9
Pavlov. Cond. lever latency6.98.710.23.2-2.92.92.8
Pavlov. Cond. magazine entry latency0.60.81.0-0.81.0-1.0-0.7
Pavlov. Cond. change in total contacts2.83.03.5-1.91.7-1.7-1.6
Pavlov. Cond. index score3.64.64.7-2.22.2-2.2-2.0
Pavlov. Cond. latency score3.24.14.4-2.12.0-2.0-1.9
Pavlov. Cond. lever contacts6.67.98.9-3.02.8-2.8-2.7
Pavlov. Cond. magazine entry number1.01.21.50.9-1.21.20.9
Pavlov. Cond. intertrial magazine entries0.20.30.3-0.50.6-0.6-0.5
Pavlov. Cond. lever-magazine prob. diff.3.84.75.0-2.12.2-2.2-2.1
Pavlov. Cond. response bias4.45.45.7-2.42.4-2.4-2.1
Pavlov. Cond. lever latency3.54.75.21.9-2.32.32.3
Pavlov. Cond. magazine entry latency0.10.10.20.4-0.30.30.1
Pavlov. Cond. change in total contacts1.42.22.9-0.91.7-1.7-1.5
Pavlov. Cond. index score0.60.81.0-0.51.0-1.0-1.0
Pavlov. Cond. latency score0.81.11.3-0.61.1-1.1-1.1
Pavlov. Cond. lever contacts2.63.64.0-1.62.0-2.0-2.0
Pavlov. Cond. magazine entry number0.40.50.80.3-0.80.80.9
Pavlov. Cond. intertrial magazine entries0.20.20.3-0.60.5-0.5-0.3
Pavlov. Cond. lever-magazine prob. diff.0.60.91.1-0.51.0-1.0-1.0
Pavlov. Cond. response bias1.52.12.4-1.11.5-1.5-1.5
Time in closed arm before self-admin0.40.50.70.9-0.60.60.7
Time in closed arm after self-admin0.10.10.20.40.3-0.3-0.1
Time in open arm before self-admin0.50.61.3-1.10.6-0.6-0.3
Time in open arm after self-admin0.30.30.9-1.00.2-0.2-0.4
Bone: periosteal estimation2.04.34.6-2.12.1-2.1-1.9
Bone: periosteal perimeter0.50.91.3-1.10.9-0.9-0.7
Bone: post-yield work1.82.74.1-2.01.5-1.5-1.4
Progressive ratio test 1 active lever presses1.11.32.50.3-1.61.60.4
Progressive ratio test 1 breakpoint0.91.12.10.2-1.41.40.3
Progressive ratio test 1 inactive lever presses0.30.41.2-1.10.1-0.1-0.5
Progressive ratio test 2 active lever presses1.82.13.80.5-1.91.90.7
Progressive ratio test 2 breakpoint1.92.23.90.5-2.02.00.8
Progressive ratio test 2 inactive lever presses0.10.10.2-0.5-0.30.3-0.4
Incentive Sensitization - Responses0.40.61.2-0.0-1.11.1-0.1
Incentive Sensitization - Breakpoint0.50.61.30.1-1.11.1-0.0
Sum of active levers in priming session hrs 5-65.04.65.51.8-2.22.22.4
Progressive ratio0.00.00.00.2-0.10.10.2
Food seeking constrained by brief footshock5.36.610.2-3.22.1-2.1-2.7
Seeking ratio, punishment vs. effort1.82.63.8-2.01.3-1.3-1.8
Retroperitoneal fat weight0.31.11.91.4-0.80.81.1
Reaction time number correct0.00.00.0-0.2-0.10.10.1
Reaction time mean minus median0.61.42.1-0.41.5-1.5-1.1
Reaction time mean minus median AUC0.82.02.5-0.91.6-1.6-1.5
Reaction time num false alarms0.10.20.3-0.20.4-0.4-0.5
Reaction time num false alarms AUC0.40.70.8-0.80.8-0.8-0.9
Reaction time trials correct on left0.00.00.0-0.2-0.10.10.1
Reaction time trials on left0.00.00.1-0.1-0.10.10.2
Reaction time mean0.40.61.91.4-0.30.30.6
Reaction time mean AUC0.40.72.21.5-0.40.40.6
Median of all reaction times1.52.13.92.0-1.11.11.4
Reaction time omissions1.72.53.61.7-1.31.31.9
Reaction time false alarm rate0.10.10.2-0.10.3-0.3-0.4
Reaction time premature initiation rate1.42.03.21.8-1.11.11.5
Reaction time premature initiations0.91.62.41.5-1.01.01.4
Std. dev. reaction times0.20.30.60.40.7-0.7-0.3
Reaction time trials completed0.00.00.1-0.1-0.10.10.2
Reaction time trials AUC0.00.00.1-0.1-0.10.10.3
Run reversals in cocaine runway, females0.10.10.10.30.3-0.3-0.0
Run reversals in cocaine runway, males0.10.10.10.3-0.30.30.2
Latency to leave start box in cocaine runway0.91.11.3-1.01.1-1.1-0.8
Latency to leave start box in cocaine runway, F0.20.20.60.2-0.30.30.8
Latency to leave start box in cocaine runway, M3.23.03.4-1.91.7-1.7-1.7
Std. dev. time between licks in bursts0.30.40.50.7-0.70.70.5
Total sessions with >9 infusions0.40.40.7-0.5-0.90.9-0.2
Short access day 1 total inactive lever presses0.40.51.4-1.20.3-0.3-0.6
Short access day 10 total inactive lever presses0.71.71.8-1.21.4-1.4-1.3
Short access day 1 total infusions0.30.40.6-0.7-0.80.8-0.2
Short access day 10 total infusions0.60.71.30.1-1.11.10.6
Short access total infusions0.91.12.1-0.1-1.51.50.4
Short access day 1 locomotion2.02.53.01.1-1.71.71.6
Short access day 10 total locomotion0.51.01.41.2-1.01.00.7
Short access total locomotion0.91.11.40.7-1.21.21.0
One hour access (0.3 mA shock)0.20.30.5-0.3-0.70.70.1
Compulsive drug intake0.20.20.5-0.10.7-0.7-0.2
One hour access (shock baseline)0.40.61.1-0.2-1.11.10.4
Social response proportion1.82.13.01.7-1.11.11.7
Social responses0.60.80.9-1.01.0-1.0-0.7
Social time0.00.00.10.1-0.10.10.3
Soleus weight0.20.50.9-0.1-0.70.70.9
Bone: stiffness5.48.89.0-3.03.0-3.0-2.9
Tibialis anterior weight7.525.631.6-5.64.9-4.9-4.7
Time to tail flick, vehicle, before self-admin0.70.71.31.2-0.70.70.8
Time to tail flick, vehicle, after self-admin0.00.10.1-0.10.3-0.3-0.3
Time to tail flick, test, before self-admin0.30.40.7-0.70.4-0.4-0.9
Time to tail flick, test, after self-admin2.32.43.3-1.01.8-1.8-1.3
Delta time to tail flick, vehicle, before/after SA0.40.40.5-0.70.5-0.5-0.7
Delta time to tail flick, test, before/after SA0.20.20.30.30.5-0.50.1
Tibia length0.00.10.2-0.4-0.30.30.4
Ambulatory time before self-admin2.23.25.5-2.41.6-1.6-1.6
Ambulatory time after self-admin0.91.11.6-1.30.8-0.8-1.1
Bone: tissue strength0.20.20.3-0.40.6-0.6-0.4
Total heroin consumption1.82.12.70.9-1.61.61.5
Bone: trabecular number1.22.02.3-1.21.5-1.5-1.5
Bone: trabecular spacing0.00.00.1-0.10.3-0.3-0.2
Bone: trabecular thickness0.10.20.30.5-0.30.30.4
Bone: trabecular tissue density3.55.26.3-2.52.2-2.2-2.2
Water consumed over 24 hours1.11.41.7-1.21.1-1.1-1.3
Number of responses in last shaping day1.01.12.0-0.0-1.11.11.4