LOC102547588

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver alternative TSS XR_005492470.2 0.02 0.01 8.9e-03 0.01 0.01 0 0.01 1.8e-02 5.8e-02 9.8e-02 3.7e-02
2 NAcc alternative polyA XR_005492470.2 0.05 0.03 6.5e-05 0.03 0.03 0.03 0.02 1.1e-05 6.0e-05 4.6e-05 1.8e-04
3 Liver gene expression LOC102547588 0.11 0.05 1.7e-13 0.12 0.11 0.1 0.11 3.0e-13 2.9e-12 1.1e-11 3.6e-12
4 NAcc alternative polyA XR_005492473.2 0.03 0.02 7.0e-04 0.01 0.01 0.01 0.01 1.8e-02 3.7e-03 5.3e-03 1.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.22.14.10.62.01.3-1.4
Area under the delay curve1.51.72.41.61.21.3-1.1
BMI with tail0.30.93.10.71.80.1-0.2
BMI without tail0.41.32.0-1.20.8-1.41.0
Body weight0.73.37.70.62.81.5-1.7
Weight adjusted by age0.20.30.9-0.10.3-0.60.9
Bone surface0.71.33.6-0.31.90.7-1.0
Bone volume0.81.43.20.41.81.1-1.1
Breakpoint value in progressive ratio session0.40.50.8-0.8-0.4-0.90.7
Number of licking bursts0.10.20.5-0.20.70.3-0.3
Context. condit. distance diff. score1.51.84.0-1.60.4-2.00.7
Locomotion velocity, session 10.50.50.9-0.70.9-0.8-0.0
Locomotion distance, session 10.60.81.6-0.80.9-1.30.4
Locomotion velocity, session 20.20.20.6-0.1-0.2-0.40.8
Locomotion distance, session 20.50.71.9-0.4-0.1-1.40.9
Locomotion velocity, session 31.82.03.6-1.90.2-1.91.0
Locomotion distance, session 34.85.29.4-3.1-0.1-2.91.8
Stereotopy head waving bouts, day 30.20.20.40.4-0.6-0.20.4
Stereotopy head waving duration, day 30.40.51.21.1-0.90.20.3
Locomotion velocity, session 72.83.16.8-2.60.1-2.20.9
Locomotion distance, session 75.87.412.3-3.3-0.8-3.52.3
Stereotopy head waving bouts, day 70.20.30.70.80.30.1-0.5
Stereotopy head waving duration, day 70.10.10.20.10.4-0.3-0.5
Locomotion velocity, session 82.02.54.7-1.5-0.6-2.21.6
Locomotion distance, session 82.94.29.1-2.0-0.0-3.01.9
Degree of sensitization distance0.30.30.6-0.5-0.4-0.80.5
Degree of sensitization stereotypy0.10.10.20.20.3-0.2-0.4
Conditioned locomotion1.61.92.71.61.31.3-1.3
Cocaine response after cond. corrected0.40.41.3-0.41.2-0.0-0.5
Cocaine response after cond. not corrected1.41.62.7-1.61.6-1.0-0.3
Cocaine response before conditioning1.72.14.2-2.00.1-1.80.9
Saline control response0.10.20.4-0.10.6-0.6-0.0
Bone: connectivity density0.71.13.40.21.90.4-0.9
Bone: cortical apparent density0.10.10.20.4-0.0-0.3-0.3
Bone: cortical area0.20.31.00.31.00.5-0.0
Bone: cortical porosity0.20.20.8-0.30.90.0-0.1
Bone: cortical porosity0.20.20.7-0.00.80.3-0.3
Bone: cortical thickness0.71.22.31.51.20.9-0.6
Bone: cortical thickness0.10.20.4-0.20.2-0.30.7
Bone: cortical tissue density0.10.10.20.3-0.1-0.4-0.1
Condit. Reinf. active minus inactive responses0.00.00.10.10.10.2-0.3
Condit. Reinf. active-inactive response ratio1.11.12.00.9-0.01.4-1.3
Condit. Reinf. active responses0.60.71.4-1.20.1-1.00.6
Condit. Reinf. inactive responses2.32.84.6-1.90.2-2.11.7
Incentive salience index mean0.20.20.60.20.10.8-0.4
Condit. Reinf. lever presses0.20.31.10.4-0.31.0-0.0
Condit. Reinf. active minus inactive responses4.45.79.9-3.2-0.5-3.01.9
Condit. Reinf. active-inactive response ratio3.74.26.9-2.6-0.9-2.51.7
Condit. Reinf. active responses2.33.25.5-2.3-0.4-2.31.3
Condit. Reinf. inactive responses0.20.30.50.50.50.5-0.7
Condit. Reinf. lever presses0.40.51.3-1.10.1-0.90.2
Condit. Reinf. lever reinforcers received2.94.17.9-2.8-0.2-2.61.3
Conditioned reinforcement - actives0.40.71.00.91.00.8-0.5
Conditioned reinforcement - inactives0.10.20.50.4-0.10.30.7
Conditioned locomotion0.10.10.20.40.3-0.00.1
Patch foraging indifference point 0 sec0.30.51.2-0.2-1.10.80.1
Patch foraging indifference point AUC0.20.30.80.4-0.40.9-0.5
Delay disc. indifference point, 0s delay0.40.40.70.50.90.3-0.7
Delay disc. indifference point, 16s delay0.91.02.41.50.21.2-0.6
Delay disc. indifference point, 2s delay2.02.24.32.10.81.7-1.0
Delay disc. indifference point, 24s delay2.42.72.91.61.71.7-1.6
Delay disc. indifference point, 4s delay1.31.42.40.81.50.5-1.5
Delay disc. indifference point, 8s delay0.00.00.00.20.2-0.10.1
Indifference point function ln k0.50.91.60.71.30.7-1.1
Indifference point function log k0.50.91.60.71.30.7-1.1
Patch foraging total patch changes 0 sec0.30.51.3-0.7-1.10.40.4
Patch foraging total patch changes 12 sec0.50.61.60.9-0.41.2-0.4
Patch foraging total patch changes 18 sec0.30.40.8-0.5-0.80.9-0.2
Patch foraging total patch changes 24 sec1.32.13.4-1.8-1.8-0.41.3
Patch foraging total patch changes 6 sec0.40.51.4-0.6-1.20.10.6
Patch foraging time to switch 0 sec0.20.50.80.4-0.5-0.90.9
Patch foraging water rate 0 sec0.40.82.3-1.5-0.8-0.00.4
Patch foraging water rate 12 sec0.81.65.4-2.3-0.5-0.70.7
Patch foraging water rate 18 sec1.21.94.6-2.2-1.1-0.81.1
Patch foraging water rate 24 sec1.31.95.3-2.3-0.7-0.81.0
Patch foraging water rate 6 sec0.50.71.5-0.80.31.2-0.7
Seeking ratio, delayed vs. immediate footshock0.20.30.5-0.1-0.7-0.70.3
Distance traveled before self-admin0.70.92.00.61.4-0.4-1.0
Distance traveled after self-admin0.80.92.40.41.60.4-1.0
Extensor digitorum longus weight0.31.02.3-1.51.20.30.4
Bone: elastic displacement0.80.92.90.3-1.7-0.40.7
Bone: elastic work1.31.74.71.0-2.20.11.1
Bone: endosteal estimation0.92.04.5-2.1-0.5-1.21.3
Bone: endosteal perimeter0.61.32.5-1.6-0.8-0.81.1
Epididymis fat weight1.24.27.01.42.61.9-2.1
Delta time in closed arm before/after self-admin0.30.30.6-0.0-0.6-0.80.5
Delta time in open arm before/after self-admin0.70.71.51.0-0.51.2-0.3
Diff in mean of infusions in LGA sessions0.20.30.7-0.9-0.0-0.50.3
Delay discount exponential model param1.82.02.9-1.7-1.2-1.41.3
Extinction: sum of active levers before priming0.20.20.4-0.5-0.4-0.60.3
Active lever presses in extinction session 62.52.54.8-1.1-1.6-1.32.2
Bone: final force0.20.30.7-0.80.2-0.20.7
Bone: final moment0.40.61.4-1.2-0.1-0.30.9
Food consumed during 24 hour testing period0.10.20.70.2-0.1-0.20.8
Glucose0.71.23.1-1.1-0.0-1.80.5
Heart weight0.20.40.8-0.6-0.0-0.90.4
Delay discount hyperbolic model param1.92.13.1-1.8-1.2-1.51.4
Intermittent access intake day 1-15 change0.10.10.3-0.30.60.1-0.1
Intermittent access intake escalation0.10.20.5-0.20.70.4-0.4
Intermittent access intake escalation 20.20.20.4-0.60.5-0.50.1
Intermitt. access day 1 inactive lever presses0.10.20.5-0.3-0.70.00.5
Intermitt. access day 15 inactive lever presses0.51.12.4-0.5-0.5-1.11.6
Intermitt. access escalation Index5.57.810.7-2.8-1.7-3.13.3
Intermittent access day 1 total infusions0.20.40.7-0.40.8-0.80.1
Intermittent access day 15 total infusions0.40.62.00.01.40.1-0.5
Intermittent access terminal intake (last 3 days)0.81.03.3-0.01.8-0.2-0.9
Intermittent access total infusions1.11.33.90.42.00.3-1.1
Intermittent access day 1 locomotion0.40.51.0-0.50.7-1.00.4
Intermittent access day 15 total locomotion0.20.30.7-0.6-0.2-0.80.6
Intermittent access total locomotion0.20.30.9-0.21.0-0.4-0.1
Intermittent access standard deviation0.40.93.10.31.70.5-0.6
Left kidney weight0.62.64.31.22.11.4-1.6
Right kidney weight0.52.25.80.22.40.7-1.6
Cocaine induced anxiety0.00.10.10.30.1-0.3-0.3
Post-drug Anxiety0.10.10.2-0.2-0.5-0.30.0
Baseline Anxiety1.41.61.9-1.3-1.3-0.91.4
Tail length0.41.75.7-2.40.3-0.90.3
Length with tail0.52.43.5-0.81.51.7-1.9
Length without tail2.27.112.61.71.93.6-3.0
Times rat made contact with spout0.40.41.0-0.1-1.0-0.60.5
Lifetime Intake1.61.95.60.42.40.1-1.4
Liver weight, left0.20.41.00.61.00.3-0.2
Liver weight, right0.91.72.70.61.61.4-1.2
Locomotor activity2.13.35.41.71.02.3-2.0
Locomotor testing distance5.59.812.93.22.13.6-3.4
Locomotor testing rearing0.91.93.10.61.51.3-1.8
Locomotion in novel chamber1.51.93.31.01.81.1-1.5
Locomotion in novel chamber post-restriction0.10.10.3-0.50.2-0.4-0.0
Fecal boli incidents, locomotor time 10.91.32.0-0.9-1.0-1.21.4
Change in fecal boli incidents, locomotor task1.71.63.61.90.31.5-0.9
Time >=10cm from walls, locomotor time 10.60.71.61.0-1.20.20.5
Bouts of movement, locomotor time 12.32.63.5-1.3-1.8-1.41.9
Total resting periods, locomotor time 12.12.33.3-1.2-1.8-1.31.8
Rest time, locomotor task time 15.97.310.7-1.9-3.2-2.13.3
Distance moved, locomotor task time 12.02.95.90.81.81.3-2.4
Vertical activity count, locomotor time 11.02.44.9-0.02.20.5-2.1
Time >=10cm from walls, locomotor time 20.81.12.21.4-0.61.5-0.3
Bouts of movement, locomotor time 20.40.61.30.20.1-1.01.2
Total resting periods, locomotor time 20.30.61.40.10.1-0.91.2
Rest time, locomotor task time 21.11.42.1-0.6-1.1-1.41.5
Distance moved, locomotor task time 20.60.71.7-0.20.50.8-1.3
Vertical activity count, locomotor time 21.01.32.30.21.50.9-1.5
Light reinforcement 10.71.64.7-0.4-2.2-0.61.1
Light reinforcement 20.30.41.6-0.1-1.30.40.0
Bone: marrow area0.92.14.5-2.1-0.6-1.31.4
Bone: maximum diameter0.10.20.90.10.90.20.0
Bone: maximum force0.20.30.7-0.70.3-0.20.8
Bone: maximum moment0.30.61.2-1.1-0.1-0.41.1
Mean time between licks in bursts0.61.44.7-2.20.8-0.4-0.0
Mean num. licks in bursts0.60.91.9-0.2-1.4-0.90.8
Cd content in liver0.60.71.11.0-0.81.0-0.3
Co content in liver0.80.92.1-0.4-1.5-0.21.1
Cu content in liver0.40.51.40.3-1.20.20.6
Fe content in liver0.10.20.4-0.70.4-0.30.0
K content in liver4.84.67.22.70.92.7-1.8
Mg content in liver3.53.64.72.21.81.9-1.7
Mn content in liver0.90.92.41.50.11.0-0.6
Na content in liver0.30.30.70.1-0.20.8-0.7
Rb content in liver0.50.61.61.30.80.4-0.1
Se content in liver0.30.40.80.50.40.9-0.5
Sr content in liver1.21.03.10.7-1.80.30.5
Zn content in liver2.83.14.51.81.22.1-1.8
Bone: minimum diameter0.30.61.8-1.4-0.1-0.50.5
Time in familiar zone, hab. session 10.30.31.21.10.3-0.1-0.1
Time in novel zone, hab. session 12.32.33.8-2.0-0.7-1.81.3
Total zone transitions, hab. session 10.30.41.21.10.6-0.30.2
Total locomotion distance, hab. session 10.50.81.70.0-0.1-1.21.3
Locomotion velocity, hab. session 10.40.51.40.1-0.2-0.81.2
Time in familiar zone, hab. session 20.50.61.20.51.10.7-0.7
Time in novel zone, hab. session 23.33.44.4-1.7-1.6-2.11.9
Total zone transitions, hab. session 20.10.10.3-0.10.6-0.40.3
Total locomotion distance, hab. session 20.81.12.5-0.5-0.2-1.31.6
Locomotion velocity, hab. session 20.81.12.4-0.5-0.2-1.31.6
Novel to familiar place preference ratio9.210.112.2-2.9-2.9-3.53.4
Novelty place preference9.310.111.8-2.8-3.0-3.43.4
Time in novel zone, NPP test9.09.711.4-2.7-3.0-3.43.3
Total zone transitions, NPP test0.40.61.1-0.60.1-1.10.9
Total locomotion distance, NPP test2.33.15.9-1.2-0.9-2.12.4
Locomotion velocity, NPP test1.92.75.0-1.3-0.8-1.92.2
Intraocular pressure0.71.03.3-0.41.8-0.6-0.3
Delta distance traveled before/after self-admin0.10.10.3-0.0-0.50.50.3
Delta ambulatory time before/after self-admin0.30.41.10.70.21.0-0.3
Parametrial fat weight6.515.227.52.15.23.3-4.3
Pavlov. Cond. lever latency0.40.51.0-0.71.0-0.7-0.4
Pavlov. Cond. magazine entry latency0.40.50.90.9-0.30.9-0.3
Pavlov. Cond. change in total contacts0.50.51.40.60.21.2-0.6
Pavlov. Cond. index score0.30.40.80.6-0.90.60.3
Pavlov. Cond. latency score0.30.40.70.8-0.90.60.3
Pavlov. Cond. lever contacts0.40.51.00.6-1.00.70.3
Pavlov. Cond. magazine entry number0.30.40.7-0.80.4-0.80.1
Pavlov. Cond. intertrial magazine entries1.82.12.8-1.6-0.7-1.71.7
Pavlov. Cond. lever-magazine prob. diff.0.20.20.40.5-0.50.70.0
Pavlov. Cond. response bias0.30.40.90.7-0.41.0-0.1
Pavlov. Cond. lever latency0.81.02.31.50.11.2-0.5
Pavlov. Cond. magazine entry latency0.70.91.7-1.0-0.2-1.30.9
Pavlov. Cond. change in total contacts0.61.01.7-1.3-0.6-1.20.7
Pavlov. Cond. index score0.70.91.7-1.2-0.1-1.30.6
Pavlov. Cond. latency score0.71.01.8-1.30.0-1.30.5
Pavlov. Cond. lever contacts0.40.51.1-1.00.1-1.00.1
Pavlov. Cond. magazine entry number1.11.42.91.10.31.7-1.1
Pavlov. Cond. intertrial magazine entries0.30.40.90.8-0.90.40.3
Pavlov. Cond. lever-magazine prob. diff.0.71.01.8-1.2-0.1-1.30.7
Pavlov. Cond. response bias0.60.81.5-1.1-0.3-1.20.6
Time in closed arm before self-admin0.20.20.5-0.0-0.50.7-0.3
Time in closed arm after self-admin0.40.41.4-0.4-1.2-0.00.1
Time in open arm before self-admin0.80.93.1-0.21.7-0.6-0.3
Time in open arm after self-admin0.10.10.30.50.30.40.1
Bone: periosteal estimation0.30.61.3-1.10.3-0.50.8
Bone: periosteal perimeter0.20.30.6-0.70.2-0.50.7
Bone: post-yield work0.20.20.8-0.20.90.4-0.1
Progressive ratio test 1 active lever presses1.01.24.10.12.0-0.1-0.9
Progressive ratio test 1 breakpoint1.11.34.40.22.1-0.0-0.9
Progressive ratio test 1 inactive lever presses0.60.93.00.41.70.1-0.5
Progressive ratio test 2 active lever presses1.41.63.90.42.00.7-1.4
Progressive ratio test 2 breakpoint1.61.84.20.42.10.7-1.5
Progressive ratio test 2 inactive lever presses0.40.72.20.41.50.3-0.7
Incentive Sensitization - Responses0.81.11.80.41.31.0-1.2
Incentive Sensitization - Breakpoint0.81.01.80.31.30.9-1.1
Sum of active levers in priming session hrs 5-61.21.12.20.0-1.5-0.01.5
Progressive ratio0.20.20.8-0.0-0.40.9-0.1
Food seeking constrained by brief footshock1.11.33.21.8-1.01.0-0.0
Seeking ratio, punishment vs. effort0.30.51.51.2-0.4-0.20.2
Retroperitoneal fat weight1.25.013.30.23.61.5-2.1
Reaction time number correct3.05.79.9-3.1-1.3-2.52.3
Reaction time mean minus median0.41.03.1-0.40.4-1.70.6
Reaction time mean minus median AUC0.61.54.2-0.80.1-2.11.1
Reaction time num false alarms0.91.31.90.71.41.1-1.3
Reaction time num false alarms AUC0.81.22.00.61.40.8-1.4
Reaction time trials correct on left3.05.79.9-3.1-1.3-2.52.3
Reaction time trials on left2.95.59.6-3.1-1.2-2.52.2
Reaction time mean3.25.111.13.31.81.5-2.0
Reaction time mean AUC2.33.69.43.11.31.1-1.5
Median of all reaction times5.88.215.94.02.02.5-2.6
Reaction time omissions1.72.54.11.22.00.7-2.0
Reaction time false alarm rate2.43.34.31.81.71.7-2.1
Reaction time premature initiation rate0.91.33.10.41.70.7-1.3
Reaction time premature initiations0.30.61.3-1.10.8-0.60.1
Std. dev. reaction times0.61.12.31.51.3-0.3-0.7
Reaction time trials completed2.95.59.6-3.1-1.2-2.52.2
Reaction time trials AUC2.95.59.6-3.1-1.2-2.52.2
Run reversals in cocaine runway, females0.50.51.4-1.20.1-0.70.3
Run reversals in cocaine runway, males0.00.00.1-0.30.1-0.00.2
Latency to leave start box in cocaine runway0.60.71.70.2-1.31.0-0.1
Latency to leave start box in cocaine runway, F0.40.51.10.4-0.71.0-0.5
Latency to leave start box in cocaine runway, M0.60.62.0-0.1-1.40.40.4
Std. dev. time between licks in bursts1.62.25.7-2.40.9-1.20.7
Total sessions with >9 infusions2.02.57.00.32.6-0.4-1.6
Short access day 1 total inactive lever presses0.30.40.80.20.90.5-0.8
Short access day 10 total inactive lever presses0.40.92.00.1-1.4-0.41.3
Short access day 1 total infusions2.63.49.00.43.00.2-2.1
Short access day 10 total infusions2.12.68.00.32.8-0.0-1.6
Short access total infusions2.93.78.51.12.90.5-2.2
Short access day 1 locomotion1.31.64.40.42.1-0.3-1.3
Short access day 10 total locomotion0.81.54.6-0.12.2-0.1-1.1
Short access total locomotion2.02.46.30.62.5-0.1-1.7
One hour access (0.3 mA shock)1.01.12.0-1.31.4-1.00.1
Compulsive drug intake0.60.81.6-1.3-0.5-0.70.8
One hour access (shock baseline)0.81.24.0-0.02.0-0.1-0.9
Social response proportion0.40.51.21.10.30.7-0.5
Social responses0.70.81.91.10.01.4-0.5
Social time2.12.84.01.31.42.0-1.9
Soleus weight0.41.11.90.8-1.40.51.3
Bone: stiffness1.01.65.3-0.32.30.5-0.9
Tibialis anterior weight0.10.41.2-1.10.10.50.2
Time to tail flick, vehicle, before self-admin1.21.22.21.51.20.9-0.7
Time to tail flick, vehicle, after self-admin0.20.30.50.00.50.7-0.6
Time to tail flick, test, before self-admin1.81.93.1-1.8-1.4-1.11.0
Time to tail flick, test, after self-admin0.60.71.40.3-1.20.70.8
Delta time to tail flick, vehicle, before/after SA0.80.82.1-1.4-0.3-0.90.4
Delta time to tail flick, test, before/after SA3.73.86.42.51.12.3-1.4
Tibia length0.71.82.40.31.51.5-1.5
Ambulatory time before self-admin0.40.71.8-0.40.9-1.30.0
Ambulatory time after self-admin1.21.52.31.41.50.7-1.0
Bone: tissue strength0.10.10.10.30.10.30.1
Total heroin consumption5.66.58.0-2.3-2.3-2.82.8
Bone: trabecular number0.50.81.90.31.40.6-0.8
Bone: trabecular spacing0.40.60.9-0.1-0.9-0.80.8
Bone: trabecular thickness0.91.12.30.90.51.5-1.0
Bone: trabecular tissue density0.71.01.6-0.9-1.3-0.81.0
Water consumed over 24 hours0.10.10.2-0.30.0-0.40.5
Number of responses in last shaping day0.10.10.20.50.50.0-0.1