LOC102546539

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose alternative polyA XR_005494104.2 0.03 0.02 1.2e-03 0.03 0.01 0.02 0.02 3.0e-04 8.1e-03 3.8e-03 1.7e-03
2 Adipose alternative polyA XR_005494105.2 0.04 0.02 1.4e-03 0.03 0.01 0.01 0.02 3.2e-04 8.3e-03 1.5e-02 2.0e-03
3 Adipose isoform ratio XR_005494105.2 0.02 0.01 9.9e-03 0.01 0.01 0 0.01 6.7e-03 1.5e-02 1.3e-01 1.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.10.10.3-0.3-0.3
Area under the delay curve0.40.60.60.7-0.7-0.7
BMI with tail0.10.40.4-0.60.60.6
BMI without tail0.00.20.2-0.40.40.4
Body weight0.83.73.71.9-1.9-1.9
Weight adjusted by age0.82.22.2-1.51.51.5
Bone surface0.10.20.20.5-0.5-0.5
Bone volume0.20.40.40.6-0.6-0.6
Breakpoint value in progressive ratio session0.00.00.00.2-0.2-0.2
Number of licking bursts0.41.21.21.1-1.1-1.1
Context. condit. distance diff. score0.00.00.0-0.10.10.1
Locomotion velocity, session 10.70.70.7-0.90.90.9
Locomotion distance, session 10.10.20.20.4-0.4-0.4
Locomotion velocity, session 20.00.00.0-0.10.10.1
Locomotion distance, session 20.30.40.40.6-0.6-0.6
Locomotion velocity, session 30.91.11.1-1.01.01.0
Locomotion distance, session 30.00.00.0-0.20.20.2
Stereotopy head waving bouts, day 30.60.70.7-0.80.80.8
Stereotopy head waving duration, day 30.30.30.3-0.60.60.6
Locomotion velocity, session 70.80.80.8-0.90.90.9
Locomotion distance, session 71.31.71.7-1.31.31.3
Stereotopy head waving bouts, day 70.80.90.91.0-1.0-1.0
Stereotopy head waving duration, day 70.40.40.40.7-0.7-0.7
Locomotion velocity, session 80.10.10.10.3-0.3-0.3
Locomotion distance, session 81.01.41.41.2-1.2-1.2
Degree of sensitization distance1.41.51.5-1.21.21.2
Degree of sensitization stereotypy1.61.81.81.3-1.3-1.3
Conditioned locomotion0.60.80.8-0.90.90.9
Cocaine response after cond. corrected3.55.35.3-2.32.32.3
Cocaine response after cond. not corrected1.62.42.4-1.51.51.5
Cocaine response before conditioning3.74.44.42.1-2.1-2.1
Saline control response2.23.03.01.7-1.7-1.7
Bone: connectivity density0.30.50.50.7-0.7-0.7
Bone: cortical apparent density0.30.50.5-0.70.70.7
Bone: cortical area0.00.00.00.1-0.1-0.1
Bone: cortical porosity3.94.34.32.1-2.1-2.1
Bone: cortical porosity3.43.73.71.9-1.9-1.9
Bone: cortical thickness0.20.30.30.6-0.6-0.6
Bone: cortical thickness0.50.60.6-0.80.80.8
Bone: cortical tissue density0.30.40.4-0.70.70.7
Condit. Reinf. active minus inactive responses0.20.20.20.5-0.5-0.5
Condit. Reinf. active-inactive response ratio1.01.11.1-1.01.01.0
Condit. Reinf. active responses1.31.61.61.3-1.3-1.3
Condit. Reinf. inactive responses5.97.77.72.8-2.8-2.8
Incentive salience index mean2.43.13.11.8-1.8-1.8
Condit. Reinf. lever presses5.98.88.83.0-3.0-3.0
Condit. Reinf. active minus inactive responses0.10.10.1-0.40.40.4
Condit. Reinf. active-inactive response ratio0.50.80.8-0.90.90.9
Condit. Reinf. active responses0.00.00.0-0.00.00.0
Condit. Reinf. inactive responses0.60.90.91.0-1.0-1.0
Condit. Reinf. lever presses0.91.31.31.1-1.1-1.1
Condit. Reinf. lever reinforcers received0.00.10.10.2-0.2-0.2
Conditioned reinforcement - actives0.20.70.7-0.80.80.8
Conditioned reinforcement - inactives1.43.93.92.0-2.0-2.0
Conditioned locomotion0.00.00.0-0.10.10.1
Patch foraging indifference point 0 sec3.49.59.53.1-3.1-3.1
Patch foraging indifference point AUC2.66.16.1-2.52.52.5
Delay disc. indifference point, 0s delay0.10.10.10.3-0.3-0.3
Delay disc. indifference point, 16s delay0.40.60.60.8-0.8-0.8
Delay disc. indifference point, 2s delay0.70.80.8-0.90.90.9
Delay disc. indifference point, 24s delay0.00.00.0-0.20.20.2
Delay disc. indifference point, 4s delay0.50.60.6-0.70.70.7
Delay disc. indifference point, 8s delay0.81.41.41.2-1.2-1.2
Indifference point function ln k2.78.18.12.8-2.8-2.8
Indifference point function log k2.78.18.12.8-2.8-2.8
Patch foraging total patch changes 0 sec3.29.49.43.1-3.1-3.1
Patch foraging total patch changes 12 sec0.71.01.01.0-1.0-1.0
Patch foraging total patch changes 18 sec0.20.40.40.6-0.6-0.6
Patch foraging total patch changes 24 sec0.62.02.01.4-1.4-1.4
Patch foraging total patch changes 6 sec1.42.32.31.5-1.5-1.5
Patch foraging time to switch 0 sec0.00.10.10.3-0.3-0.3
Patch foraging water rate 0 sec1.03.73.71.9-1.9-1.9
Patch foraging water rate 12 sec0.10.30.30.6-0.6-0.6
Patch foraging water rate 18 sec0.00.00.00.2-0.2-0.2
Patch foraging water rate 24 sec0.40.50.50.7-0.7-0.7
Patch foraging water rate 6 sec0.30.50.50.7-0.7-0.7
Seeking ratio, delayed vs. immediate footshock0.20.20.2-0.50.50.5
Distance traveled before self-admin0.20.40.4-0.60.60.6
Distance traveled after self-admin1.73.03.0-1.71.71.7
Extensor digitorum longus weight2.07.97.9-2.82.82.8
Bone: elastic displacement0.50.60.60.8-0.8-0.8
Bone: elastic work1.41.81.81.4-1.4-1.4
Bone: endosteal estimation0.10.30.3-0.50.50.5
Bone: endosteal perimeter0.20.40.4-0.60.60.6
Epididymis fat weight0.31.61.61.3-1.3-1.3
Delta time in closed arm before/after self-admin0.00.00.00.1-0.1-0.1
Delta time in open arm before/after self-admin0.00.00.0-0.20.20.2
Diff in mean of infusions in LGA sessions0.10.20.20.5-0.5-0.5
Delay discount exponential model param0.20.30.3-0.50.50.5
Extinction: sum of active levers before priming0.60.90.91.0-1.0-1.0
Active lever presses in extinction session 60.50.50.50.7-0.7-0.7
Bone: final force0.61.01.01.0-1.0-1.0
Bone: final moment0.81.21.21.1-1.1-1.1
Food consumed during 24 hour testing period0.00.10.10.2-0.2-0.2
Glucose0.30.40.4-0.60.60.6
Heart weight0.00.00.00.1-0.1-0.1
Delay discount hyperbolic model param0.10.10.1-0.30.30.3
Intermittent access intake day 1-15 change0.73.83.81.9-1.9-1.9
Intermittent access intake escalation0.84.54.52.1-2.1-2.1
Intermittent access intake escalation 20.20.30.30.5-0.5-0.5
Intermitt. access day 1 inactive lever presses0.00.30.30.5-0.5-0.5
Intermitt. access day 15 inactive lever presses0.31.51.51.2-1.2-1.2
Intermitt. access escalation Index0.00.00.00.0-0.0-0.0
Intermittent access day 1 total infusions0.72.22.21.5-1.5-1.5
Intermittent access day 15 total infusions2.05.05.02.2-2.2-2.2
Intermittent access terminal intake (last 3 days)1.01.81.81.4-1.4-1.4
Intermittent access total infusions3.33.93.92.0-2.0-2.0
Intermittent access day 1 locomotion2.74.94.92.2-2.2-2.2
Intermittent access day 15 total locomotion0.20.60.60.8-0.8-0.8
Intermittent access total locomotion2.32.82.81.7-1.7-1.7
Intermittent access standard deviation0.10.50.50.7-0.7-0.7
Left kidney weight0.97.37.32.7-2.7-2.7
Right kidney weight1.510.610.63.3-3.3-3.3
Cocaine induced anxiety0.30.90.90.9-0.9-0.9
Post-drug Anxiety1.01.21.21.1-1.1-1.1
Baseline Anxiety0.00.00.00.0-0.0-0.0
Tail length0.94.74.72.2-2.2-2.2
Length with tail1.77.67.62.8-2.8-2.8
Length without tail0.10.70.70.8-0.8-0.8
Times rat made contact with spout2.22.52.51.6-1.6-1.6
Lifetime Intake2.83.43.41.9-1.9-1.9
Liver weight, left0.00.10.10.2-0.2-0.2
Liver weight, right0.10.10.10.4-0.4-0.4
Locomotor activity1.42.22.21.5-1.5-1.5
Locomotor testing distance1.94.64.62.1-2.1-2.1
Locomotor testing rearing1.66.06.02.4-2.4-2.4
Locomotion in novel chamber1.62.12.11.4-1.4-1.4
Locomotion in novel chamber post-restriction0.10.40.4-0.70.70.7
Fecal boli incidents, locomotor time 11.02.72.71.6-1.6-1.6
Change in fecal boli incidents, locomotor task2.12.32.3-1.51.51.5
Time >=10cm from walls, locomotor time 11.51.81.81.3-1.3-1.3
Bouts of movement, locomotor time 10.40.50.5-0.70.70.7
Total resting periods, locomotor time 11.01.11.1-1.01.01.0
Rest time, locomotor task time 10.50.90.9-0.90.90.9
Distance moved, locomotor task time 10.10.20.20.5-0.5-0.5
Vertical activity count, locomotor time 10.00.00.00.0-0.0-0.0
Time >=10cm from walls, locomotor time 20.30.90.9-1.01.01.0
Bouts of movement, locomotor time 20.30.90.9-1.01.01.0
Total resting periods, locomotor time 20.10.40.4-0.60.60.6
Rest time, locomotor task time 20.00.00.0-0.10.10.1
Distance moved, locomotor task time 20.50.60.60.8-0.8-0.8
Vertical activity count, locomotor time 20.00.10.1-0.30.30.3
Light reinforcement 10.31.21.21.1-1.1-1.1
Light reinforcement 20.10.30.3-0.60.60.6
Bone: marrow area0.10.20.2-0.40.40.4
Bone: maximum diameter0.71.41.4-1.21.21.2
Bone: maximum force0.20.50.50.7-0.7-0.7
Bone: maximum moment0.40.70.70.8-0.8-0.8
Mean time between licks in bursts0.00.00.00.0-0.0-0.0
Mean num. licks in bursts0.00.00.00.0-0.0-0.0
Cd content in liver0.10.10.10.3-0.3-0.3
Co content in liver3.33.93.9-2.02.02.0
Cu content in liver0.40.50.5-0.70.70.7
Fe content in liver0.00.00.0-0.00.00.0
K content in liver0.40.40.40.6-0.6-0.6
Mg content in liver0.00.00.0-0.10.10.1
Mn content in liver0.10.10.1-0.30.30.3
Na content in liver2.93.23.21.8-1.8-1.8
Rb content in liver0.00.00.00.1-0.1-0.1
Se content in liver0.10.10.1-0.30.30.3
Sr content in liver1.00.90.9-0.90.90.9
Zn content in liver0.00.00.00.1-0.1-0.1
Bone: minimum diameter0.00.00.0-0.10.10.1
Time in familiar zone, hab. session 11.01.11.11.0-1.0-1.0
Time in novel zone, hab. session 16.47.27.2-2.72.72.7
Total zone transitions, hab. session 10.30.40.4-0.60.60.6
Total locomotion distance, hab. session 10.00.10.1-0.30.30.3
Locomotion velocity, hab. session 10.60.80.80.9-0.9-0.9
Time in familiar zone, hab. session 20.10.20.2-0.40.40.4
Time in novel zone, hab. session 20.10.10.1-0.30.30.3
Total zone transitions, hab. session 20.20.30.30.6-0.6-0.6
Total locomotion distance, hab. session 20.20.20.20.5-0.5-0.5
Locomotion velocity, hab. session 20.20.20.20.5-0.5-0.5
Novel to familiar place preference ratio0.60.80.80.9-0.9-0.9
Novelty place preference1.01.31.31.2-1.2-1.2
Time in novel zone, NPP test0.81.01.01.0-1.0-1.0
Total zone transitions, NPP test0.81.21.21.1-1.1-1.1
Total locomotion distance, NPP test1.62.32.31.5-1.5-1.5
Locomotion velocity, NPP test2.02.92.91.7-1.7-1.7
Intraocular pressure0.60.90.90.9-0.9-0.9
Delta distance traveled before/after self-admin2.62.82.8-1.71.71.7
Delta ambulatory time before/after self-admin0.81.31.3-1.11.11.1
Parametrial fat weight1.02.42.41.5-1.5-1.5
Pavlov. Cond. lever latency4.05.15.1-2.32.32.3
Pavlov. Cond. magazine entry latency0.40.50.50.7-0.7-0.7
Pavlov. Cond. change in total contacts1.82.02.01.4-1.4-1.4
Pavlov. Cond. index score4.05.15.12.3-2.3-2.3
Pavlov. Cond. latency score4.35.55.52.3-2.3-2.3
Pavlov. Cond. lever contacts5.46.66.62.6-2.6-2.6
Pavlov. Cond. magazine entry number0.50.60.6-0.80.80.8
Pavlov. Cond. intertrial magazine entries1.61.91.91.4-1.4-1.4
Pavlov. Cond. lever-magazine prob. diff.3.64.54.52.1-2.1-2.1
Pavlov. Cond. response bias1.11.41.41.2-1.2-1.2
Pavlov. Cond. lever latency0.91.31.3-1.11.11.1
Pavlov. Cond. magazine entry latency1.62.32.31.5-1.5-1.5
Pavlov. Cond. change in total contacts0.10.10.1-0.40.40.4
Pavlov. Cond. index score0.81.21.21.1-1.1-1.1
Pavlov. Cond. latency score0.81.21.21.1-1.1-1.1
Pavlov. Cond. lever contacts1.62.32.31.5-1.5-1.5
Pavlov. Cond. magazine entry number0.40.50.5-0.70.70.7
Pavlov. Cond. intertrial magazine entries0.61.41.41.2-1.2-1.2
Pavlov. Cond. lever-magazine prob. diff.0.40.70.70.8-0.8-0.8
Pavlov. Cond. response bias1.62.22.21.5-1.5-1.5
Time in closed arm before self-admin0.00.00.0-0.20.20.2
Time in closed arm after self-admin0.00.00.0-0.00.00.0
Time in open arm before self-admin0.30.40.4-0.60.60.6
Time in open arm after self-admin0.50.50.5-0.70.70.7
Bone: periosteal estimation0.10.30.3-0.50.50.5
Bone: periosteal perimeter0.30.50.5-0.70.70.7
Bone: post-yield work0.50.80.8-0.90.90.9
Progressive ratio test 1 active lever presses0.00.10.10.3-0.3-0.3
Progressive ratio test 1 breakpoint0.00.00.00.1-0.1-0.1
Progressive ratio test 1 inactive lever presses0.82.02.01.4-1.4-1.4
Progressive ratio test 2 active lever presses0.30.50.50.7-0.7-0.7
Progressive ratio test 2 breakpoint0.50.60.60.8-0.8-0.8
Progressive ratio test 2 inactive lever presses0.82.42.41.6-1.6-1.6
Incentive Sensitization - Responses0.20.60.60.8-0.8-0.8
Incentive Sensitization - Breakpoint0.40.90.91.0-1.0-1.0
Sum of active levers in priming session hrs 5-63.33.13.1-1.81.81.8
Progressive ratio0.00.00.0-0.10.10.1
Food seeking constrained by brief footshock5.46.86.8-2.62.62.6
Seeking ratio, punishment vs. effort1.22.72.7-1.61.61.6
Retroperitoneal fat weight0.10.60.60.8-0.8-0.8
Reaction time number correct1.34.54.5-2.12.12.1
Reaction time mean minus median0.00.20.20.4-0.4-0.4
Reaction time mean minus median AUC0.00.00.0-0.00.00.0
Reaction time num false alarms0.00.00.0-0.20.20.2
Reaction time num false alarms AUC0.00.00.0-0.10.10.1
Reaction time trials correct on left1.34.54.5-2.12.12.1
Reaction time trials on left1.34.54.5-2.12.12.1
Reaction time mean0.00.00.00.1-0.1-0.1
Reaction time mean AUC0.00.00.0-0.10.10.1
Median of all reaction times0.00.00.0-0.20.20.2
Reaction time omissions0.10.10.1-0.30.30.3
Reaction time false alarm rate0.70.90.91.0-1.0-1.0
Reaction time premature initiation rate0.10.20.2-0.40.40.4
Reaction time premature initiations0.92.82.8-1.71.71.7
Std. dev. reaction times0.00.10.1-0.20.20.2
Reaction time trials completed1.34.54.5-2.12.12.1
Reaction time trials AUC1.34.44.4-2.12.12.1
Run reversals in cocaine runway, females0.10.10.1-0.30.30.3
Run reversals in cocaine runway, males1.61.71.71.3-1.3-1.3
Latency to leave start box in cocaine runway1.01.41.4-1.21.21.2
Latency to leave start box in cocaine runway, F0.70.90.9-0.90.90.9
Latency to leave start box in cocaine runway, M0.80.80.8-0.90.90.9
Std. dev. time between licks in bursts0.10.10.10.4-0.4-0.4
Total sessions with >9 infusions0.91.11.11.0-1.0-1.0
Short access day 1 total inactive lever presses4.18.38.32.9-2.9-2.9
Short access day 10 total inactive lever presses0.11.01.01.0-1.0-1.0
Short access day 1 total infusions0.51.01.01.0-1.0-1.0
Short access day 10 total infusions1.01.61.61.3-1.3-1.3
Short access total infusions1.62.32.31.5-1.5-1.5
Short access day 1 locomotion0.71.21.21.1-1.1-1.1
Short access day 10 total locomotion0.20.90.90.9-0.9-0.9
Short access total locomotion1.52.22.21.5-1.5-1.5
One hour access (0.3 mA shock)3.33.93.92.0-2.0-2.0
Compulsive drug intake3.14.64.62.1-2.1-2.1
One hour access (shock baseline)0.00.00.00.2-0.2-0.2
Social response proportion2.83.63.6-1.91.91.9
Social responses1.52.02.0-1.41.41.4
Social time0.10.20.20.4-0.4-0.4
Soleus weight3.510.310.3-3.23.23.2
Bone: stiffness0.30.50.50.7-0.7-0.7
Tibialis anterior weight0.51.71.7-1.31.31.3
Time to tail flick, vehicle, before self-admin2.93.63.61.9-1.9-1.9
Time to tail flick, vehicle, after self-admin0.40.90.9-0.90.90.9
Time to tail flick, test, before self-admin2.22.62.61.6-1.6-1.6
Time to tail flick, test, after self-admin0.10.10.1-0.30.30.3
Delta time to tail flick, vehicle, before/after SA1.11.21.2-1.11.11.1
Delta time to tail flick, test, before/after SA2.73.43.4-1.81.81.8
Tibia length11.231.031.05.6-5.6-5.6
Ambulatory time before self-admin0.00.00.0-0.10.10.1
Ambulatory time after self-admin1.11.81.8-1.31.31.3
Bone: tissue strength0.10.10.1-0.30.30.3
Total heroin consumption0.00.00.00.2-0.2-0.2
Bone: trabecular number0.00.10.10.2-0.2-0.2
Bone: trabecular spacing0.81.11.1-1.11.11.1
Bone: trabecular thickness1.62.22.21.5-1.5-1.5
Bone: trabecular tissue density0.20.40.4-0.60.60.6
Water consumed over 24 hours0.00.10.10.3-0.3-0.3
Number of responses in last shaping day0.20.20.2-0.50.50.5