LOC100912347

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC100912347 0.03 0.02 4.0e-03 0 0.02 0.01 0.01 2.3e-01 5.9e-03 1.8e-02 5.5e-02
2 LHb gene expression LOC100912347 0.17 0.1 5.1e-03 0.03 0.05 0.02 0.02 8.3e-02 2.8e-02 1.2e-01 1.3e-01
3 Liver gene expression LOC100912347 0.03 0.02 4.2e-04 0.02 0.01 0.02 0.01 2.9e-03 1.6e-02 3.6e-03 7.7e-03
4 NAcc gene expression LOC100912347 0.02 0.01 8.9e-03 0 0.01 0.01 0 1.5e-01 5.3e-02 3.7e-02 8.2e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.10.20.00.10.10.5
Area under the delay curve1.71.82.9-1.6-1.71.20.6
BMI with tail2.16.711.3-3.1-3.42.50.0
BMI without tail0.81.63.1-1.5-1.80.90.6
Body weight1.77.012.8-3.1-3.62.3-0.4
Weight adjusted by age2.22.53.6-1.8-1.91.60.8
Bone surface1.93.44.1-1.7-1.62.02.0
Bone volume0.91.51.7-1.2-1.21.31.2
Breakpoint value in progressive ratio session1.31.41.9-1.2-1.21.40.9
Number of licking bursts2.32.73.2-1.8-1.71.71.4
Context. condit. distance diff. score0.50.60.9-0.8-0.71.00.6
Locomotion velocity, session 10.50.51.0-0.9-1.00.40.3
Locomotion distance, session 10.40.50.90.60.6-0.90.6
Locomotion velocity, session 20.70.91.2-1.1-1.10.41.0
Locomotion distance, session 20.20.30.60.0-0.2-0.80.7
Locomotion velocity, session 31.21.45.5-0.00.30.12.3
Locomotion distance, session 31.82.02.61.41.6-1.41.2
Stereotopy head waving bouts, day 30.20.20.40.30.60.6-0.0
Stereotopy head waving duration, day 30.20.31.0-0.20.01.0-0.2
Locomotion velocity, session 70.10.10.20.30.3-0.30.4
Locomotion distance, session 70.20.30.8-0.3-0.20.40.9
Stereotopy head waving bouts, day 70.91.14.0-0.30.10.42.0
Stereotopy head waving duration, day 71.11.34.6-0.6-0.30.52.1
Locomotion velocity, session 81.21.44.4-0.8-0.70.32.1
Locomotion distance, session 80.60.92.7-0.7-0.70.21.6
Degree of sensitization distance1.61.62.4-1.3-1.41.5-0.5
Degree of sensitization stereotypy1.01.13.9-0.4-0.20.32.0
Conditioned locomotion0.81.02.50.70.5-0.8-1.6
Cocaine response after cond. corrected1.82.02.9-1.7-1.61.50.5
Cocaine response after cond. not corrected2.52.83.8-1.9-1.91.9-0.1
Cocaine response before conditioning1.01.22.0-1.2-1.41.0-0.5
Saline control response0.10.20.40.30.60.40.4
Bone: connectivity density0.71.11.71.21.3-0.80.7
Bone: cortical apparent density2.83.75.11.91.8-2.3-1.7
Bone: cortical area0.20.31.1-0.3-0.21.0-0.3
Bone: cortical porosity0.40.50.80.70.7-0.3-0.9
Bone: cortical porosity0.60.61.01.01.0-0.4-0.5
Bone: cortical thickness1.62.73.31.81.8-1.2-1.8
Bone: cortical thickness0.81.02.50.70.7-0.5-1.6
Bone: cortical tissue density2.63.44.81.81.7-2.2-1.6
Condit. Reinf. active minus inactive responses0.40.40.7-0.6-0.9-0.50.6
Condit. Reinf. active-inactive response ratio0.20.20.4-0.6-0.70.2-0.3
Condit. Reinf. active responses0.91.12.2-1.0-1.1-0.21.5
Condit. Reinf. inactive responses0.70.82.6-0.5-0.6-0.01.6
Incentive salience index mean0.91.11.8-1.2-1.30.51.0
Condit. Reinf. lever presses1.11.41.9-1.2-1.21.41.0
Condit. Reinf. active minus inactive responses1.41.72.1-1.4-1.31.21.4
Condit. Reinf. active-inactive response ratio0.40.40.9-0.6-0.30.60.9
Condit. Reinf. active responses1.82.43.6-1.9-1.91.40.9
Condit. Reinf. inactive responses0.91.12.3-1.2-1.50.7-0.1
Condit. Reinf. lever presses1.72.33.4-1.7-1.51.80.9
Condit. Reinf. lever reinforcers received1.42.03.1-1.7-1.81.20.6
Conditioned reinforcement - actives0.10.10.10.30.3-0.10.2
Conditioned reinforcement - inactives0.00.00.00.20.1-0.2-0.2
Conditioned locomotion1.01.23.40.80.6-0.6-1.8
Patch foraging indifference point 0 sec0.20.30.5-0.5-0.40.30.7
Patch foraging indifference point AUC0.70.81.40.80.6-1.2-0.9
Delay disc. indifference point, 0s delay0.30.30.7-0.4-0.5-0.30.8
Delay disc. indifference point, 16s delay0.10.10.1-0.2-0.20.3-0.3
Delay disc. indifference point, 2s delay0.50.61.2-0.9-1.10.40.2
Delay disc. indifference point, 24s delay0.00.00.1-0.2-0.20.00.0
Delay disc. indifference point, 4s delay1.51.51.9-1.4-1.40.91.3
Delay disc. indifference point, 8s delay3.63.75.8-2.3-2.41.71.0
Indifference point function ln k0.81.21.8-1.1-0.81.01.3
Indifference point function log k0.81.21.8-1.1-0.81.01.3
Patch foraging total patch changes 0 sec0.10.10.2-0.4-0.40.20.3
Patch foraging total patch changes 12 sec0.81.01.21.00.9-1.1-1.0
Patch foraging total patch changes 18 sec0.20.30.60.50.5-0.3-0.8
Patch foraging total patch changes 24 sec0.30.41.30.20.1-1.10.3
Patch foraging total patch changes 6 sec0.30.40.80.50.4-0.90.6
Patch foraging time to switch 0 sec0.40.61.41.11.2-0.3-0.1
Patch foraging water rate 0 sec1.21.93.3-1.8-1.81.00.3
Patch foraging water rate 12 sec1.82.73.6-1.9-1.81.11.6
Patch foraging water rate 18 sec0.10.20.4-0.1-0.2-0.7-0.4
Patch foraging water rate 24 sec0.00.10.2-0.1-0.0-0.30.4
Patch foraging water rate 6 sec1.92.73.3-1.8-1.81.41.6
Seeking ratio, delayed vs. immediate footshock5.46.36.6-2.5-2.42.52.6
Distance traveled before self-admin1.81.92.6-1.2-1.01.61.6
Distance traveled after self-admin3.53.95.1-2.1-2.12.31.4
Extensor digitorum longus weight1.14.26.1-2.3-2.51.61.7
Bone: elastic displacement0.40.40.70.50.4-0.7-0.9
Bone: elastic work0.20.20.40.40.4-0.3-0.6
Bone: endosteal estimation4.59.912.6-3.3-3.23.62.3
Bone: endosteal perimeter2.55.36.9-2.5-2.42.61.5
Epididymis fat weight3.78.612.52.92.5-3.5-2.6
Delta time in closed arm before/after self-admin1.11.12.90.80.7-0.7-1.7
Delta time in open arm before/after self-admin1.81.83.21.41.8-0.81.1
Diff in mean of infusions in LGA sessions2.73.04.9-1.8-1.72.20.9
Delay discount exponential model param2.02.13.41.71.8-1.2-0.8
Extinction: sum of active levers before priming0.20.20.50.10.30.70.3
Active lever presses in extinction session 60.80.81.6-0.8-0.70.81.3
Bone: final force0.20.40.6-0.7-0.70.80.1
Bone: final moment0.10.20.3-0.4-0.40.5-0.4
Food consumed during 24 hour testing period5.36.49.2-2.9-2.83.00.5
Glucose0.30.51.00.70.8-1.0-0.0
Heart weight0.10.10.2-0.3-0.5-0.2-0.3
Delay discount hyperbolic model param1.81.93.01.61.7-1.2-0.8
Intermittent access intake day 1-15 change0.10.10.1-0.3-0.40.30.1
Intermittent access intake escalation0.80.81.1-1.0-1.11.00.4
Intermittent access intake escalation 21.81.72.0-1.4-1.41.41.1
Intermitt. access day 1 inactive lever presses0.10.10.20.20.2-0.1-0.5
Intermitt. access day 15 inactive lever presses1.31.43.10.90.6-1.1-1.8
Intermitt. access escalation Index2.32.13.6-1.8-1.91.1-0.5
Intermittent access day 1 total infusions2.42.83.11.81.7-1.4-1.7
Intermittent access day 15 total infusions0.40.51.10.60.5-0.4-1.1
Intermittent access terminal intake (last 3 days)0.20.20.70.0-0.10.3-0.8
Intermittent access total infusions0.80.81.30.91.0-0.4-1.2
Intermittent access day 1 locomotion3.43.64.71.91.8-1.7-2.2
Intermittent access day 15 total locomotion0.90.91.51.00.9-0.5-1.2
Intermittent access total locomotion0.20.20.50.50.5-0.0-0.7
Intermittent access standard deviation0.20.20.3-0.1-0.20.6-0.6
Left kidney weight0.30.71.4-1.0-1.20.6-0.4
Right kidney weight0.20.71.2-0.9-1.10.80.1
Cocaine induced anxiety0.20.20.50.30.4-0.20.7
Post-drug Anxiety1.31.42.01.41.4-1.40.4
Baseline Anxiety1.61.72.31.31.2-1.5-1.0
Tail length0.10.30.5-0.5-0.7-0.10.6
Length with tail0.31.12.3-1.2-1.50.60.1
Length without tail1.12.33.2-1.7-1.81.6-0.8
Times rat made contact with spout1.92.23.3-1.7-1.71.80.1
Lifetime Intake1.72.02.41.51.5-1.0-1.5
Liver weight, left0.20.30.5-0.7-0.70.1-0.2
Liver weight, right0.20.30.7-0.6-0.8-0.2-0.4
Locomotor activity0.10.20.3-0.5-0.50.2-0.4
Locomotor testing distance0.00.10.1-0.4-0.4-0.0-0.1
Locomotor testing rearing0.00.00.1-0.2-0.2-0.30.1
Locomotion in novel chamber0.30.30.50.50.5-0.5-0.7
Locomotion in novel chamber post-restriction0.10.10.20.50.4-0.2-0.3
Fecal boli incidents, locomotor time 11.21.32.3-1.3-1.51.0-0.2
Change in fecal boli incidents, locomotor task0.70.61.9-0.10.30.71.4
Time >=10cm from walls, locomotor time 10.60.60.8-0.8-0.70.90.7
Bouts of movement, locomotor time 10.10.20.3-0.4-0.50.4-0.0
Total resting periods, locomotor time 10.10.10.2-0.4-0.50.5-0.1
Rest time, locomotor task time 10.60.71.0-1.0-1.00.9-0.4
Distance moved, locomotor task time 10.70.81.80.80.8-1.30.1
Vertical activity count, locomotor time 10.30.30.60.60.5-0.80.0
Time >=10cm from walls, locomotor time 20.20.21.00.10.10.1-1.0
Bouts of movement, locomotor time 20.70.71.40.70.4-1.2-0.9
Total resting periods, locomotor time 20.40.50.90.50.3-0.9-0.8
Rest time, locomotor task time 21.01.21.91.11.1-0.7-1.4
Distance moved, locomotor task time 20.30.41.1-0.3-0.3-0.51.0
Vertical activity count, locomotor time 20.10.10.2-0.4-0.40.00.3
Light reinforcement 11.32.44.8-1.9-2.21.10.2
Light reinforcement 20.20.30.60.30.40.4-0.8
Bone: marrow area4.59.713.0-3.3-3.23.62.2
Bone: maximum diameter5.810.715.6-3.5-3.44.01.7
Bone: maximum force0.71.11.6-1.2-1.21.30.3
Bone: maximum moment0.40.61.1-0.9-0.91.0-0.1
Mean time between licks in bursts0.30.40.70.70.7-0.2-0.8
Mean num. licks in bursts0.60.71.90.60.5-0.6-1.4
Cd content in liver0.20.20.4-0.4-0.60.10.5
Co content in liver0.60.72.10.3-0.1-0.9-1.5
Cu content in liver0.60.81.90.60.4-0.8-1.4
Fe content in liver1.31.65.9-0.30.10.72.4
K content in liver0.10.10.3-0.2-0.20.20.5
Mg content in liver0.80.81.4-1.1-1.20.60.6
Mn content in liver0.40.41.20.40.50.2-1.1
Na content in liver0.40.41.4-0.2-0.00.51.2
Rb content in liver1.41.83.0-1.3-1.21.01.7
Se content in liver0.91.11.91.31.4-0.8-0.6
Sr content in liver0.30.20.5-0.4-0.50.70.3
Zn content in liver0.50.61.90.40.2-0.4-1.4
Bone: minimum diameter0.30.50.9-0.5-0.51.0-0.7
Time in familiar zone, hab. session 11.71.62.6-1.3-1.21.60.9
Time in novel zone, hab. session 11.11.12.00.80.7-1.4-1.2
Total zone transitions, hab. session 11.21.73.01.41.3-1.70.2
Total locomotion distance, hab. session 12.02.95.71.81.6-2.40.0
Locomotion velocity, hab. session 11.31.83.21.51.4-1.80.2
Time in familiar zone, hab. session 20.30.30.4-0.6-0.50.60.6
Time in novel zone, hab. session 20.10.10.30.20.2-0.1-0.5
Total zone transitions, hab. session 20.60.82.10.70.4-1.50.6
Total locomotion distance, hab. session 20.91.23.21.00.8-1.80.1
Locomotion velocity, hab. session 21.21.63.51.31.0-1.9-0.1
Novel to familiar place preference ratio0.40.40.6-0.7-0.70.6-0.0
Novelty place preference1.01.01.4-1.1-1.21.10.0
Time in novel zone, NPP test1.61.72.3-1.5-1.51.50.2
Total zone transitions, NPP test0.20.30.90.10.0-0.61.0
Total locomotion distance, NPP test0.40.51.20.30.2-1.10.8
Locomotion velocity, NPP test0.81.12.40.90.8-1.60.8
Intraocular pressure0.10.10.2-0.4-0.40.20.1
Delta distance traveled before/after self-admin0.60.71.3-1.0-1.10.6-0.3
Delta ambulatory time before/after self-admin0.60.60.9-0.9-1.00.7-0.4
Parametrial fat weight0.10.10.20.30.3-0.40.2
Pavlov. Cond. lever latency1.21.52.01.11.1-1.4-1.3
Pavlov. Cond. magazine entry latency0.10.10.30.30.2-0.1-0.6
Pavlov. Cond. change in total contacts0.10.10.1-0.1-0.30.2-0.3
Pavlov. Cond. index score0.10.10.1-0.1-0.30.40.2
Pavlov. Cond. latency score0.10.20.2-0.2-0.40.50.4
Pavlov. Cond. lever contacts0.60.71.1-0.8-0.91.00.7
Pavlov. Cond. magazine entry number0.10.10.3-0.5-0.40.20.3
Pavlov. Cond. intertrial magazine entries1.01.24.0-0.7-0.6-0.22.0
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.2-0.30.50.3
Pavlov. Cond. response bias0.00.00.1-0.0-0.20.20.0
Pavlov. Cond. lever latency2.63.54.42.12.0-1.8-1.6
Pavlov. Cond. magazine entry latency0.80.91.91.21.4-0.50.1
Pavlov. Cond. change in total contacts0.50.70.9-0.9-0.90.90.7
Pavlov. Cond. index score0.81.01.4-0.9-0.81.11.2
Pavlov. Cond. latency score1.11.41.9-1.1-0.91.41.3
Pavlov. Cond. lever contacts2.63.64.5-2.1-2.01.91.5
Pavlov. Cond. magazine entry number0.20.20.6-0.2-0.5-0.2-0.8
Pavlov. Cond. intertrial magazine entries0.20.20.3-0.4-0.60.4-0.4
Pavlov. Cond. lever-magazine prob. diff.0.60.71.0-0.8-0.61.01.0
Pavlov. Cond. response bias0.60.91.2-1.0-0.80.81.1
Time in closed arm before self-admin0.60.60.8-0.9-0.80.90.6
Time in closed arm after self-admin0.40.51.40.40.3-0.4-1.2
Time in open arm before self-admin1.21.31.8-1.3-1.31.30.0
Time in open arm after self-admin0.70.82.6-0.20.20.71.6
Bone: periosteal estimation2.96.19.0-2.6-2.53.01.4
Bone: periosteal perimeter1.52.53.6-1.6-1.41.91.3
Bone: post-yield work3.44.75.6-2.4-2.32.02.0
Progressive ratio test 1 active lever presses0.40.41.50.20.2-0.2-1.2
Progressive ratio test 1 breakpoint0.40.41.60.20.10.1-1.2
Progressive ratio test 1 inactive lever presses0.60.61.20.70.7-0.6-1.1
Progressive ratio test 2 active lever presses0.40.40.80.50.4-0.6-0.9
Progressive ratio test 2 breakpoint0.20.20.40.30.3-0.5-0.6
Progressive ratio test 2 inactive lever presses1.72.02.41.51.5-1.0-1.6
Incentive Sensitization - Responses0.40.40.60.50.4-0.8-0.6
Incentive Sensitization - Breakpoint0.60.61.10.70.6-1.0-0.8
Sum of active levers in priming session hrs 5-60.50.50.9-0.6-0.50.90.7
Progressive ratio0.81.01.8-1.1-1.30.8-0.5
Food seeking constrained by brief footshock4.96.08.3-2.9-2.82.02.0
Seeking ratio, punishment vs. effort0.81.03.0-0.8-0.60.31.7
Retroperitoneal fat weight0.82.84.51.40.9-2.1-2.0
Reaction time number correct0.50.82.7-0.4-0.20.41.7
Reaction time mean minus median1.52.02.11.41.4-1.4-1.5
Reaction time mean minus median AUC1.01.31.61.21.3-1.2-1.0
Reaction time num false alarms1.01.42.31.31.3-1.5-0.2
Reaction time num false alarms AUC1.21.62.71.41.4-1.6-0.1
Reaction time trials correct on left0.50.82.7-0.4-0.20.41.7
Reaction time trials on left0.50.72.7-0.3-0.10.31.7
Reaction time mean1.11.61.91.41.4-0.9-1.3
Reaction time mean AUC0.71.01.31.11.1-0.6-1.0
Median of all reaction times1.11.41.81.31.4-0.8-1.3
Reaction time omissions1.82.53.51.81.8-1.9-0.3
Reaction time false alarm rate1.52.13.31.51.4-1.8-1.1
Reaction time premature initiation rate0.10.10.3-0.4-0.5-0.2-0.1
Reaction time premature initiations0.20.30.4-0.6-0.6-0.00.7
Std. dev. reaction times1.82.53.01.71.7-1.5-1.3
Reaction time trials completed0.50.72.7-0.3-0.10.31.7
Reaction time trials AUC0.60.93.1-0.4-0.20.41.8
Run reversals in cocaine runway, females1.21.21.90.90.9-1.0-1.4
Run reversals in cocaine runway, males1.21.22.1-1.1-1.10.61.5
Latency to leave start box in cocaine runway0.20.20.6-0.10.00.40.7
Latency to leave start box in cocaine runway, F0.10.10.2-0.4-0.40.30.4
Latency to leave start box in cocaine runway, M0.40.40.80.80.9-0.40.2
Std. dev. time between licks in bursts0.70.81.7-0.7-0.60.91.3
Total sessions with >9 infusions0.10.20.40.10.20.3-0.7
Short access day 1 total inactive lever presses0.30.31.20.10.0-0.1-1.1
Short access day 10 total inactive lever presses0.00.00.10.10.1-0.20.3
Short access day 1 total infusions0.60.71.10.90.8-0.2-1.1
Short access day 10 total infusions1.01.11.91.21.4-0.4-1.0
Short access total infusions3.43.84.72.12.2-1.5-2.0
Short access day 1 locomotion0.30.30.6-0.5-0.50.8-0.1
Short access day 10 total locomotion0.20.20.6-0.2-0.20.80.2
Short access total locomotion0.60.61.50.70.7-0.0-1.2
One hour access (0.3 mA shock)0.60.70.90.90.9-0.7-0.8
Compulsive drug intake0.10.10.20.00.20.4-0.3
One hour access (shock baseline)0.20.20.30.50.5-0.3-0.3
Social response proportion1.01.11.71.01.0-1.0-1.3
Social responses0.10.20.40.20.1-0.4-0.7
Social time0.10.10.30.10.2-0.60.0
Soleus weight7.822.829.5-5.4-5.44.33.8
Bone: stiffness0.20.30.6-0.5-0.40.30.8
Tibialis anterior weight4.715.918.7-4.3-4.24.13.3
Time to tail flick, vehicle, before self-admin0.70.71.8-0.7-0.60.51.3
Time to tail flick, vehicle, after self-admin2.62.84.5-1.6-1.42.11.5
Time to tail flick, test, before self-admin0.10.10.2-0.3-0.4-0.1-0.2
Time to tail flick, test, after self-admin1.31.41.8-1.3-1.31.20.8
Delta time to tail flick, vehicle, before/after SA0.60.61.0-0.8-0.71.00.6
Delta time to tail flick, test, before/after SA1.31.21.9-1.1-0.91.40.9
Tibia length1.02.94.4-1.5-1.62.1-1.5
Ambulatory time before self-admin0.30.40.7-0.4-0.30.70.8
Ambulatory time after self-admin2.62.84.0-1.8-1.72.01.1
Bone: tissue strength0.40.40.50.70.7-0.7-0.4
Total heroin consumption2.42.83.4-1.8-1.81.81.2
Bone: trabecular number0.20.30.90.20.3-0.00.9
Bone: trabecular spacing2.53.35.01.71.5-2.2-1.7
Bone: trabecular thickness0.20.20.5-0.2-0.20.5-0.7
Bone: trabecular tissue density0.40.62.20.20.1-0.2-1.5
Water consumed over 24 hours2.63.14.4-2.0-2.02.10.5
Number of responses in last shaping day2.12.23.7-1.6-1.61.90.0