LOC100912167

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL mRNA stability LOC100912167 0.29 0.23 2.0e-03 0.01 0.01 0.02 0.03 1.2e-02 7.4e-03 2.4e-03 8.9e-04
2 PL gene expression LOC100912167 0.07 0.04 1.2e-05 0.05 0.04 0.04 0.04 6.4e-06 5.9e-05 2.1e-05 2.0e-05
3 Brain gene expression LOC100912167 0.05 0.04 7.8e-03 0.03 0.02 0.04 0.03 1.7e-03 1.2e-02 1.6e-04 1.4e-03
4 BLA gene expression LOC100912167 0.08 0.06 2.0e-03 0.03 0.01 0.02 0.01 7.7e-03 9.7e-02 3.2e-02 8.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.10.1-0.00.20.20.4
Area under the delay curve1.21.22.0-1.40.80.91.3
BMI with tail0.00.10.10.3-0.2-0.20.4
BMI without tail0.30.72.61.6-0.2-0.3-0.0
Body weight2.49.917.84.2-2.8-2.9-2.3
Weight adjusted by age2.62.94.42.1-1.5-1.6-1.5
Bone surface0.20.30.50.7-0.4-0.4-0.6
Bone volume0.10.10.20.4-0.2-0.2-0.3
Breakpoint value in progressive ratio session1.61.82.80.5-1.7-1.6-1.3
Number of licking bursts0.10.10.20.50.40.40.0
Context. condit. distance diff. score0.50.61.0-0.41.01.00.5
Locomotion velocity, session 10.30.31.2-1.10.10.10.1
Locomotion distance, session 13.54.54.9-2.12.22.22.0
Locomotion velocity, session 21.92.24.8-2.21.41.40.5
Locomotion distance, session 21.21.72.2-1.11.51.51.1
Locomotion velocity, session 30.30.41.0-1.00.40.50.2
Locomotion distance, session 31.71.94.3-2.11.11.20.7
Stereotopy head waving bouts, day 30.00.00.1-0.40.10.0-0.2
Stereotopy head waving duration, day 30.10.10.1-0.40.30.3-0.1
Locomotion velocity, session 70.60.71.2-1.10.80.80.5
Locomotion distance, session 75.36.78.0-2.82.62.62.3
Stereotopy head waving bouts, day 70.20.20.50.4-0.4-0.3-0.7
Stereotopy head waving duration, day 70.91.12.21.2-0.7-0.6-1.5
Locomotion velocity, session 81.51.82.6-1.11.61.60.8
Locomotion distance, session 82.13.14.5-1.12.12.11.6
Degree of sensitization distance0.20.20.40.10.50.50.6
Degree of sensitization stereotypy0.30.30.70.6-0.4-0.4-0.8
Conditioned locomotion0.80.92.81.7-0.7-0.6-0.2
Cocaine response after cond. corrected0.20.20.3-0.3-0.6-0.60.3
Cocaine response after cond. not corrected0.20.20.6-0.8-0.1-0.10.4
Cocaine response before conditioning0.70.91.3-0.91.21.10.3
Saline control response2.22.84.72.2-1.5-1.5-1.4
Bone: connectivity density0.30.50.8-0.50.90.90.4
Bone: cortical apparent density1.51.93.9-2.00.80.91.6
Bone: cortical area6.09.112.53.5-2.9-3.0-2.5
Bone: cortical porosity4.44.87.11.4-2.6-2.7-1.8
Bone: cortical porosity3.74.15.81.4-2.4-2.4-1.6
Bone: cortical thickness6.410.512.43.5-3.3-3.3-2.7
Bone: cortical thickness1.92.22.91.6-1.7-1.7-0.8
Bone: cortical tissue density1.72.24.4-2.10.90.91.7
Condit. Reinf. active minus inactive responses1.11.21.91.4-1.0-1.1-0.9
Condit. Reinf. active-inactive response ratio0.30.40.50.6-0.7-0.7-0.3
Condit. Reinf. active responses2.02.44.32.1-1.3-1.4-1.3
Condit. Reinf. inactive responses0.60.71.21.1-0.6-0.7-0.9
Incentive salience index mean1.01.22.11.5-0.8-0.8-1.1
Condit. Reinf. lever presses0.10.20.30.10.50.5-0.2
Condit. Reinf. active minus inactive responses0.40.51.11.0-0.4-0.4-0.6
Condit. Reinf. active-inactive response ratio2.52.63.51.9-1.6-1.5-1.4
Condit. Reinf. active responses0.00.10.10.00.30.30.3
Condit. Reinf. inactive responses1.41.71.9-1.41.31.21.3
Condit. Reinf. lever presses0.40.51.3-0.40.50.61.1
Condit. Reinf. lever reinforcers received0.20.30.6-0.30.50.40.8
Conditioned reinforcement - actives0.10.10.20.40.40.20.2
Conditioned reinforcement - inactives1.61.82.11.4-1.3-1.4-1.1
Conditioned locomotion0.40.51.01.0-0.5-0.5-0.6
Patch foraging indifference point 0 sec0.00.00.10.30.0-0.1-0.3
Patch foraging indifference point AUC0.10.10.3-0.00.40.40.5
Delay disc. indifference point, 0s delay0.10.10.20.10.00.10.4
Delay disc. indifference point, 16s delay4.24.35.1-1.92.12.12.3
Delay disc. indifference point, 2s delay0.10.10.1-0.3-0.3-0.30.0
Delay disc. indifference point, 24s delay1.61.63.9-2.00.80.91.0
Delay disc. indifference point, 4s delay0.10.10.5-0.70.0-0.10.2
Delay disc. indifference point, 8s delay0.10.10.4-0.7-0.1-0.00.2
Indifference point function ln k0.81.22.3-1.50.90.90.7
Indifference point function log k0.81.22.3-1.50.90.90.7
Patch foraging total patch changes 0 sec0.00.00.00.00.10.0-0.0
Patch foraging total patch changes 12 sec0.00.00.00.20.0-0.1-0.1
Patch foraging total patch changes 18 sec1.31.62.2-1.01.31.31.5
Patch foraging total patch changes 24 sec0.30.41.21.1-0.5-0.50.0
Patch foraging total patch changes 6 sec0.60.91.41.2-0.9-0.9-0.9
Patch foraging time to switch 0 sec0.20.31.0-1.00.30.30.5
Patch foraging water rate 0 sec0.71.13.21.8-0.5-0.5-0.7
Patch foraging water rate 12 sec0.40.60.9-0.41.00.80.8
Patch foraging water rate 18 sec0.20.20.50.70.50.40.0
Patch foraging water rate 24 sec0.20.30.80.40.30.40.9
Patch foraging water rate 6 sec0.00.00.10.10.30.3-0.2
Seeking ratio, delayed vs. immediate footshock1.11.31.91.4-1.0-1.0-1.2
Distance traveled before self-admin2.42.64.61.0-1.6-1.5-2.1
Distance traveled after self-admin0.10.10.10.20.30.3-0.3
Extensor digitorum longus weight0.41.82.8-0.91.31.31.7
Bone: elastic displacement1.31.52.11.4-1.3-1.3-0.6
Bone: elastic work8.711.312.93.6-3.6-3.6-2.6
Bone: endosteal estimation0.30.70.9-0.50.91.00.9
Bone: endosteal perimeter0.61.32.21.5-1.0-1.0-1.1
Epididymis fat weight0.30.72.01.4-0.6-0.6-0.1
Delta time in closed arm before/after self-admin0.20.20.50.70.40.4-0.1
Delta time in open arm before/after self-admin0.10.10.2-0.20.30.40.5
Diff in mean of infusions in LGA sessions0.10.10.4-0.0-0.3-0.2-0.7
Delay discount exponential model param1.31.32.71.6-0.7-0.8-1.2
Extinction: sum of active levers before priming0.60.61.7-1.30.50.50.3
Active lever presses in extinction session 60.90.91.60.2-1.3-1.2-0.7
Bone: final force4.37.010.33.2-2.6-2.6-2.1
Bone: final moment5.38.612.03.5-2.9-2.9-2.3
Food consumed during 24 hour testing period0.20.30.60.8-0.4-0.5-0.5
Glucose0.81.12.6-1.6-1.0-1.0-0.2
Heart weight0.20.30.50.7-0.6-0.40.4
Delay discount hyperbolic model param1.21.22.61.6-0.7-0.7-1.1
Intermittent access intake day 1-15 change0.20.20.40.2-0.6-0.5-0.3
Intermittent access intake escalation0.20.20.20.3-0.5-0.4-0.4
Intermittent access intake escalation 23.43.44.30.9-2.1-2.1-2.1
Intermitt. access day 1 inactive lever presses1.92.03.01.7-1.6-1.2-1.1
Intermitt. access day 15 inactive lever presses0.40.51.11.0-0.4-0.4-0.6
Intermitt. access escalation Index0.60.51.81.30.40.40.0
Intermittent access day 1 total infusions0.10.10.20.4-0.0-0.20.2
Intermittent access day 15 total infusions0.10.20.50.7-0.2-0.30.1
Intermittent access terminal intake (last 3 days)0.60.61.01.0-0.7-0.9-0.5
Intermittent access total infusions0.10.10.40.7-0.2-0.4-0.1
Intermittent access day 1 locomotion0.20.20.70.9-0.3-0.30.2
Intermittent access day 15 total locomotion0.60.70.90.8-1.0-0.9-0.6
Intermittent access total locomotion0.50.50.90.9-0.8-0.7-0.4
Intermittent access standard deviation0.70.81.1-0.4-1.1-1.0-0.9
Left kidney weight0.61.52.61.6-1.1-1.2-0.9
Right kidney weight0.10.41.31.1-0.3-0.3-0.1
Cocaine induced anxiety7.78.89.52.7-3.1-3.1-3.0
Post-drug Anxiety1.71.92.50.7-1.5-1.6-1.6
Baseline Anxiety6.67.09.6-3.12.52.52.5
Tail length2.57.619.24.4-1.8-1.9-2.1
Length with tail3.011.219.44.4-2.9-3.0-2.8
Length without tail1.32.83.51.4-1.9-1.8-1.5
Times rat made contact with spout2.73.13.41.7-1.8-1.8-1.9
Lifetime Intake0.00.00.10.3-0.0-0.2-0.1
Liver weight, left0.30.50.80.4-0.9-0.9-0.4
Liver weight, right2.94.98.22.9-1.6-1.6-2.5
Locomotor activity0.30.41.0-1.00.40.40.5
Locomotor testing distance0.50.91.5-1.00.70.71.2
Locomotor testing rearing0.40.60.8-0.60.80.80.9
Locomotion in novel chamber0.60.81.2-0.11.11.10.8
Locomotion in novel chamber post-restriction0.81.01.51.2-1.0-0.9-0.8
Fecal boli incidents, locomotor time 10.40.50.6-0.80.60.70.6
Change in fecal boli incidents, locomotor task1.11.03.6-1.9-0.2-0.2-0.6
Time >=10cm from walls, locomotor time 10.80.81.2-0.61.11.10.8
Bouts of movement, locomotor time 11.21.32.4-1.51.10.81.1
Total resting periods, locomotor time 11.01.12.4-1.60.90.61.0
Rest time, locomotor task time 10.10.20.4-0.0-0.5-0.6-0.2
Distance moved, locomotor task time 10.20.20.50.70.10.40.5
Vertical activity count, locomotor time 10.20.20.50.70.30.50.3
Time >=10cm from walls, locomotor time 20.00.00.00.20.10.1-0.1
Bouts of movement, locomotor time 21.61.82.1-1.41.31.21.5
Total resting periods, locomotor time 21.61.72.0-1.11.41.21.4
Rest time, locomotor task time 20.00.00.0-0.10.10.10.1
Distance moved, locomotor task time 20.10.10.20.40.00.20.4
Vertical activity count, locomotor time 20.40.40.70.10.70.70.8
Light reinforcement 10.30.51.51.20.30.20.5
Light reinforcement 21.11.53.81.9-0.7-0.8-1.0
Bone: marrow area0.30.80.9-0.51.01.00.9
Bone: maximum diameter1.73.25.22.3-1.4-1.4-1.8
Bone: maximum force3.86.510.73.3-2.4-2.4-2.0
Bone: maximum moment4.67.912.23.5-2.7-2.7-2.2
Mean time between licks in bursts1.11.61.7-1.31.31.31.2
Mean num. licks in bursts0.81.01.50.5-1.2-1.2-0.9
Cd content in liver2.02.23.3-1.81.31.31.5
Co content in liver0.10.20.3-0.50.20.20.5
Cu content in liver1.72.02.70.7-1.6-1.5-1.6
Fe content in liver0.91.11.4-1.01.01.01.2
K content in liver0.80.82.51.6-0.4-0.3-0.6
Mg content in liver0.70.71.4-0.01.11.20.6
Mn content in liver0.50.51.10.8-0.4-0.4-1.1
Na content in liver0.10.10.30.4-0.1-0.1-0.5
Rb content in liver0.00.10.20.40.10.2-0.0
Se content in liver0.10.10.10.2-0.2-0.3-0.3
Sr content in liver1.00.91.40.1-1.2-1.2-0.9
Zn content in liver0.30.30.70.7-0.2-0.1-0.9
Bone: minimum diameter3.46.38.02.8-2.5-2.5-2.3
Time in familiar zone, hab. session 10.20.20.2-0.4-0.4-0.40.4
Time in novel zone, hab. session 10.10.10.20.10.40.4-0.2
Total zone transitions, hab. session 10.71.01.5-1.00.80.81.2
Total locomotion distance, hab. session 10.10.20.3-0.10.40.40.6
Locomotion velocity, hab. session 10.10.10.20.00.40.40.5
Time in familiar zone, hab. session 20.50.51.0-0.70.50.51.0
Time in novel zone, hab. session 20.00.00.1-0.10.30.3-0.2
Total zone transitions, hab. session 22.02.53.3-1.21.81.81.5
Total locomotion distance, hab. session 20.60.81.5-0.01.21.20.6
Locomotion velocity, hab. session 20.40.51.00.31.01.00.4
Novel to familiar place preference ratio3.43.54.71.2-2.2-2.2-1.8
Novelty place preference3.53.64.71.2-2.2-2.2-1.8
Time in novel zone, NPP test2.52.63.51.0-1.9-1.9-1.6
Total zone transitions, NPP test3.04.35.3-1.32.32.32.2
Total locomotion distance, NPP test1.72.33.4-0.71.81.81.5
Locomotion velocity, NPP test0.91.31.8-0.41.41.31.2
Intraocular pressure0.10.10.20.1-0.4-0.40.0
Delta distance traveled before/after self-admin1.92.02.7-0.81.51.51.7
Delta ambulatory time before/after self-admin2.72.93.8-1.21.81.82.0
Parametrial fat weight1.12.24.12.0-1.5-1.3-0.8
Pavlov. Cond. lever latency3.94.97.6-2.11.92.02.8
Pavlov. Cond. magazine entry latency4.55.86.32.4-2.5-2.5-2.2
Pavlov. Cond. change in total contacts1.82.02.90.7-1.7-1.7-1.3
Pavlov. Cond. index score5.46.88.52.9-2.4-2.4-2.7
Pavlov. Cond. latency score5.56.98.72.8-2.4-2.4-2.9
Pavlov. Cond. lever contacts2.32.84.31.8-1.3-1.3-2.1
Pavlov. Cond. magazine entry number5.06.37.5-2.32.72.72.2
Pavlov. Cond. intertrial magazine entries0.30.30.9-0.20.50.50.9
Pavlov. Cond. lever-magazine prob. diff.5.46.78.12.9-2.5-2.5-2.6
Pavlov. Cond. response bias4.75.75.92.4-2.4-2.4-2.3
Pavlov. Cond. lever latency0.40.51.0-0.1-0.8-0.8-1.0
Pavlov. Cond. magazine entry latency3.94.44.6-2.12.12.12.2
Pavlov. Cond. change in total contacts1.72.33.6-1.31.41.41.9
Pavlov. Cond. index score1.51.93.4-1.11.31.31.8
Pavlov. Cond. latency score1.51.93.0-1.01.31.31.7
Pavlov. Cond. lever contacts0.50.71.20.30.90.91.1
Pavlov. Cond. magazine entry number3.44.25.01.9-2.0-2.0-2.2
Pavlov. Cond. intertrial magazine entries0.91.22.51.6-0.9-0.9-0.7
Pavlov. Cond. lever-magazine prob. diff.1.82.33.8-1.31.41.42.0
Pavlov. Cond. response bias1.11.52.3-0.61.31.31.5
Time in closed arm before self-admin0.30.30.7-0.9-0.5-0.5-0.2
Time in closed arm after self-admin0.40.40.5-0.5-0.7-0.6-0.6
Time in open arm before self-admin0.10.10.30.60.20.2-0.3
Time in open arm after self-admin0.30.40.6-0.10.70.80.5
Bone: periosteal estimation1.12.34.12.0-1.4-1.4-1.2
Bone: periosteal perimeter5.08.210.13.2-2.8-2.8-2.7
Bone: post-yield work0.40.60.9-0.20.90.90.7
Progressive ratio test 1 active lever presses0.40.41.01.0-0.3-0.6-0.3
Progressive ratio test 1 breakpoint0.40.41.21.1-0.3-0.6-0.3
Progressive ratio test 1 inactive lever presses1.01.13.41.8-0.6-0.5-0.5
Progressive ratio test 2 active lever presses0.30.40.60.8-0.7-0.6-0.2
Progressive ratio test 2 breakpoint0.20.20.60.8-0.4-0.4-0.0
Progressive ratio test 2 inactive lever presses0.70.81.00.9-0.9-1.0-0.7
Incentive Sensitization - Responses0.20.20.40.4-0.40.00.6
Incentive Sensitization - Breakpoint0.20.20.30.4-0.5-0.10.5
Sum of active levers in priming session hrs 5-61.51.52.00.2-1.4-1.4-1.4
Progressive ratio0.10.20.6-0.80.20.1-0.0
Food seeking constrained by brief footshock0.20.20.3-0.4-0.5-0.5-0.3
Seeking ratio, punishment vs. effort0.00.00.10.30.00.10.3
Retroperitoneal fat weight2.37.417.24.1-2.4-2.2-1.3
Reaction time number correct4.36.28.5-0.92.82.72.9
Reaction time mean minus median0.10.20.30.1-0.4-0.4-0.5
Reaction time mean minus median AUC0.20.20.50.7-0.1-0.0-0.5
Reaction time num false alarms0.30.30.7-0.90.30.40.6
Reaction time num false alarms AUC0.60.81.5-1.20.60.70.9
Reaction time trials correct on left4.36.28.5-0.92.82.72.9
Reaction time trials on left4.46.38.7-0.92.92.72.9
Reaction time mean0.10.10.30.00.20.20.6
Reaction time mean AUC0.20.30.8-0.10.50.50.9
Median of all reaction times0.20.30.8-0.20.40.40.9
Reaction time omissions0.10.10.20.40.20.40.1
Reaction time false alarm rate0.40.50.7-0.7-0.8-0.7-0.8
Reaction time premature initiation rate0.70.92.6-1.60.50.60.6
Reaction time premature initiations3.04.24.8-1.92.02.02.2
Std. dev. reaction times0.50.80.8-0.90.80.90.9
Reaction time trials completed4.46.38.7-0.92.92.72.9
Reaction time trials AUC4.36.18.5-0.92.82.72.9
Run reversals in cocaine runway, females3.53.45.0-1.61.71.82.2
Run reversals in cocaine runway, males3.33.24.01.1-2.0-2.0-1.9
Latency to leave start box in cocaine runway0.90.91.2-0.81.00.91.1
Latency to leave start box in cocaine runway, F1.41.52.2-0.61.31.31.5
Latency to leave start box in cocaine runway, M0.00.00.0-0.1-0.0-0.1-0.1
Std. dev. time between licks in bursts1.51.82.40.21.51.61.5
Total sessions with >9 infusions0.30.30.5-0.70.60.50.3
Short access day 1 total inactive lever presses0.20.20.50.70.30.30.3
Short access day 10 total inactive lever presses2.73.04.62.1-1.8-1.5-1.5
Short access day 1 total infusions0.60.71.4-1.20.90.70.5
Short access day 10 total infusions0.60.60.91.0-0.6-0.8-0.8
Short access total infusions0.00.00.1-0.10.30.1-0.0
Short access day 1 locomotion0.10.10.4-0.2-0.1-0.2-0.6
Short access day 10 total locomotion0.60.71.10.1-1.1-1.1-0.6
Short access total locomotion0.10.10.2-0.2-0.3-0.4-0.5
One hour access (0.3 mA shock)0.20.30.90.9-0.3-0.40.1
Compulsive drug intake0.10.10.40.7-0.2-0.10.3
One hour access (shock baseline)0.10.10.50.70.10.0-0.0
Social response proportion0.80.91.0-0.91.00.90.9
Social responses0.10.10.2-0.20.50.30.3
Social time0.40.50.7-0.60.60.60.9
Soleus weight0.92.56.42.5-1.1-1.1-1.2
Bone: stiffness0.40.71.11.0-0.7-0.7-0.7
Tibialis anterior weight0.10.30.6-0.30.70.70.2
Time to tail flick, vehicle, before self-admin0.10.10.30.50.20.2-0.1
Time to tail flick, vehicle, after self-admin0.80.81.2-1.10.80.90.8
Time to tail flick, test, before self-admin0.30.30.60.1-0.7-0.8-0.5
Time to tail flick, test, after self-admin0.20.20.3-0.2-0.4-0.4-0.5
Delta time to tail flick, vehicle, before/after SA0.40.40.5-0.50.60.60.7
Delta time to tail flick, test, before/after SA0.20.20.7-0.80.00.0-0.0
Tibia length9.526.838.66.2-5.1-5.0-4.2
Ambulatory time before self-admin3.83.96.61.6-1.8-1.8-2.6
Ambulatory time after self-admin0.10.10.20.3-0.1-0.1-0.5
Bone: tissue strength0.30.31.11.1-0.2-0.2-0.1
Total heroin consumption1.92.33.60.5-1.9-1.8-1.4
Bone: trabecular number0.00.00.0-0.20.10.00.1
Bone: trabecular spacing1.11.41.9-0.31.41.41.3
Bone: trabecular thickness1.82.13.00.9-1.7-1.7-1.3
Bone: trabecular tissue density0.40.60.7-0.70.80.80.6
Water consumed over 24 hours0.60.71.40.4-0.7-0.7-1.2
Number of responses in last shaping day1.01.03.21.8-0.6-0.5-0.6