LOC100912167

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC100912167 0.04 0.03 5.9e-04 0.01 0.01 0.01 0.01 1.7e-02 3.3e-03 3.5e-03 1.7e-03
2 BLA gene expression LOC100912167 0.1 0.06 5.7e-04 0.03 0.04 0.02 0.02 1.3e-02 2.0e-03 3.6e-02 2.1e-02
3 Brain gene expression LOC100912167 0.03 0.02 9.0e-03 0.02 0.01 0.01 0.01 9.7e-03 2.2e-02 3.4e-02 2.3e-02
4 PL gene expression LOC100912167 0.04 0.03 9.8e-04 0.03 0.01 0.02 0.02 6.0e-04 7.1e-03 3.7e-03 2.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.10.4-0.1-0.1-0.0
Area under the delay curve1.41.72.3-1.5-1.3-0.9-1.4
BMI with tail0.10.20.50.7-0.00.20.4
BMI without tail0.72.05.22.31.00.91.1
Body weight2.08.613.83.72.62.42.8
Weight adjusted by age2.43.76.12.51.61.71.8
Bone surface0.40.81.00.80.70.91.0
Bone volume0.20.30.50.70.40.50.6
Breakpoint value in progressive ratio session1.11.42.60.40.91.31.6
Number of licking bursts0.00.10.20.50.00.1-0.0
Context. condit. distance diff. score0.50.61.30.3-1.1-0.8-0.5
Locomotion velocity, session 10.50.62.2-1.5-0.1-0.1-0.2
Locomotion distance, session 13.24.04.5-2.1-2.1-2.0-1.8
Locomotion velocity, session 21.61.85.4-2.3-1.2-0.5-0.3
Locomotion distance, session 20.81.11.7-0.9-1.3-1.0-0.9
Locomotion velocity, session 30.50.62.0-1.4-0.4-0.2-0.0
Locomotion distance, session 32.02.24.5-2.1-1.5-1.1-0.9
Stereotopy head waving bouts, day 30.10.10.4-0.60.10.20.0
Stereotopy head waving duration, day 30.10.10.4-0.6-0.20.0-0.1
Locomotion velocity, session 70.60.61.0-1.0-0.9-0.6-0.5
Locomotion distance, session 74.86.07.9-2.3-2.8-2.4-2.2
Stereotopy head waving bouts, day 70.30.40.60.50.40.70.8
Stereotopy head waving duration, day 70.91.11.60.80.81.11.3
Locomotion velocity, session 81.21.42.6-1.0-1.6-1.1-0.9
Locomotion distance, session 81.82.64.7-0.3-2.2-1.8-1.5
Degree of sensitization distance0.20.20.30.6-0.4-0.4-0.4
Degree of sensitization stereotypy0.20.20.50.50.20.50.7
Conditioned locomotion1.01.24.22.00.60.20.1
Cocaine response after cond. corrected0.10.10.3-0.50.0-0.10.0
Cocaine response after cond. not corrected0.30.41.1-1.1-0.4-0.3-0.2
Cocaine response before conditioning0.50.60.8-0.8-0.9-0.7-0.7
Saline control response1.51.94.22.11.21.01.0
Bone: connectivity density0.10.10.4-0.0-0.6-0.2-0.1
Bone: cortical apparent density2.02.74.7-2.2-1.5-1.5-1.4
Bone: cortical area5.58.411.73.42.92.52.7
Bone: cortical porosity2.83.04.41.12.11.81.8
Bone: cortical porosity3.03.34.51.42.11.71.9
Bone: cortical thickness5.38.810.63.33.22.72.7
Bone: cortical thickness0.70.81.51.21.20.50.4
Bone: cortical tissue density2.12.95.1-2.3-1.5-1.5-1.4
Condit. Reinf. active minus inactive responses1.11.22.41.50.90.81.0
Condit. Reinf. active-inactive response ratio0.30.30.90.90.50.30.4
Condit. Reinf. active responses1.92.45.22.31.31.11.2
Condit. Reinf. inactive responses0.50.61.21.10.60.60.6
Incentive salience index mean1.11.32.41.50.90.91.1
Condit. Reinf. lever presses0.00.00.10.1-0.4-0.00.1
Condit. Reinf. active minus inactive responses0.20.20.60.80.30.20.2
Condit. Reinf. active-inactive response ratio2.12.52.91.71.61.51.5
Condit. Reinf. active responses0.20.30.4-0.1-0.6-0.6-0.7
Condit. Reinf. inactive responses1.92.52.7-1.4-1.6-1.6-1.6
Condit. Reinf. lever presses0.50.71.10.0-0.8-1.1-1.1
Condit. Reinf. lever reinforcers received0.50.71.0-0.2-0.9-1.0-1.0
Conditioned reinforcement - actives0.00.10.20.0-0.3-0.0-0.4
Conditioned reinforcement - inactives0.91.31.81.30.71.31.1
Conditioned locomotion0.10.10.20.50.10.30.2
Patch foraging indifference point 0 sec0.00.00.00.10.1-0.1-0.0
Patch foraging indifference point AUC0.10.10.4-0.0-0.2-0.6-0.1
Delay disc. indifference point, 0s delay0.10.10.10.3-0.00.3-0.3
Delay disc. indifference point, 16s delay3.74.15.9-1.3-2.0-2.2-2.4
Delay disc. indifference point, 2s delay0.20.20.7-0.4-0.20.80.3
Delay disc. indifference point, 24s delay1.92.25.1-2.3-1.2-0.8-1.2
Delay disc. indifference point, 4s delay0.10.20.6-0.7-0.3-0.0-0.1
Delay disc. indifference point, 8s delay0.30.31.0-1.0-0.30.1-0.3
Indifference point function ln k0.61.11.4-1.2-1.1-0.9-1.0
Indifference point function log k0.61.11.4-1.2-1.1-0.9-1.0
Patch foraging total patch changes 0 sec0.00.00.10.1-0.1-0.3-0.3
Patch foraging total patch changes 12 sec0.10.10.30.00.40.10.5
Patch foraging total patch changes 18 sec0.91.42.5-0.5-1.1-1.6-1.2
Patch foraging total patch changes 24 sec0.20.41.11.10.50.10.1
Patch foraging total patch changes 6 sec0.60.91.21.01.10.81.0
Patch foraging time to switch 0 sec0.20.30.7-0.9-0.4-0.2-0.6
Patch foraging water rate 0 sec0.51.03.01.70.60.40.7
Patch foraging water rate 12 sec0.20.50.80.1-0.9-0.8-0.7
Patch foraging water rate 18 sec0.10.20.70.8-0.3-0.30.1
Patch foraging water rate 24 sec0.60.91.21.1-0.7-1.1-0.8
Patch foraging water rate 6 sec0.10.10.20.3-0.4-0.00.4
Seeking ratio, delayed vs. immediate footshock0.81.01.31.10.81.20.9
Distance traveled before self-admin1.72.34.51.21.11.42.1
Distance traveled after self-admin0.20.20.40.7-0.1-0.20.6
Extensor digitorum longus weight0.41.42.0-0.1-1.4-1.3-1.4
Bone: elastic displacement1.01.21.81.31.30.70.8
Bone: elastic work7.39.513.23.23.62.72.7
Bone: endosteal estimation0.30.60.9-0.2-1.0-0.9-0.8
Bone: endosteal perimeter0.81.82.31.51.21.21.3
Epididymis fat weight0.31.13.31.80.60.40.7
Delta time in closed arm before/after self-admin0.30.30.70.5-0.3-0.5-0.8
Delta time in open arm before/after self-admin0.00.00.1-0.2-0.30.1-0.0
Diff in mean of infusions in LGA sessions0.81.02.00.40.71.21.4
Delay discount exponential model param1.61.83.21.81.20.81.3
Extinction: sum of active levers before priming0.10.10.4-0.6-0.30.00.1
Active lever presses in extinction session 61.21.22.5-0.40.81.21.6
Bone: final force4.06.410.53.22.52.12.1
Bone: final moment4.97.912.23.52.92.32.4
Food consumed during 24 hour testing period0.30.40.60.80.40.60.6
Glucose1.42.28.5-2.90.00.10.5
Heart weight0.40.60.90.71.00.70.8
Delay discount hyperbolic model param1.31.42.91.71.10.61.1
Intermittent access intake day 1-15 change0.40.91.60.50.91.30.9
Intermittent access intake escalation0.40.71.40.50.81.20.8
Intermittent access intake escalation 22.73.14.61.31.62.21.9
Intermitt. access day 1 inactive lever presses0.20.71.91.40.50.60.6
Intermitt. access day 15 inactive lever presses0.20.51.51.20.00.60.5
Intermitt. access escalation Index0.10.20.30.5-0.0-0.4-0.5
Intermittent access day 1 total infusions0.00.00.00.20.10.2-0.1
Intermittent access day 15 total infusions0.40.61.00.80.61.00.4
Intermittent access terminal intake (last 3 days)0.81.01.21.10.91.10.9
Intermittent access total infusions0.20.20.40.50.30.60.4
Intermittent access day 1 locomotion0.10.10.30.40.10.50.2
Intermittent access day 15 total locomotion0.51.01.31.00.91.10.9
Intermittent access total locomotion0.40.50.60.70.50.70.7
Intermittent access standard deviation0.51.12.7-0.50.61.61.1
Left kidney weight0.31.21.60.51.21.21.3
Right kidney weight0.10.70.90.40.90.81.0
Cocaine induced anxiety4.15.98.71.32.22.93.0
Post-drug Anxiety2.32.55.5-0.11.11.82.3
Baseline Anxiety1.72.03.3-1.8-1.2-1.6-0.7
Tail length3.011.619.14.43.22.92.9
Length with tail3.213.915.53.93.93.53.6
Length without tail1.54.76.51.82.52.02.2
Times rat made contact with spout2.83.34.01.31.92.02.0
Lifetime Intake0.10.10.50.20.10.70.3
Liver weight, left0.10.20.5-0.70.1-0.2-0.2
Liver weight, right3.05.39.13.02.02.12.0
Locomotor activity0.30.50.9-1.0-0.7-0.70.1
Locomotor testing distance1.12.03.1-1.3-1.4-1.8-1.1
Locomotor testing rearing0.51.11.6-0.7-1.1-1.3-1.0
Locomotion in novel chamber0.30.30.70.0-0.5-0.6-0.8
Locomotion in novel chamber post-restriction1.42.43.21.81.51.61.1
Fecal boli incidents, locomotor time 10.30.40.6-0.4-0.6-0.8-0.6
Change in fecal boli incidents, locomotor task0.60.61.8-1.4-0.00.40.6
Time >=10cm from walls, locomotor time 10.40.40.90.1-0.6-0.7-0.9
Bouts of movement, locomotor time 11.21.32.9-1.7-1.0-0.7-1.0
Total resting periods, locomotor time 11.11.33.4-1.8-0.9-0.6-0.8
Rest time, locomotor task time 10.20.20.4-0.40.40.60.3
Distance moved, locomotor task time 10.20.30.60.70.2-0.8-0.2
Vertical activity count, locomotor time 10.20.51.41.20.0-0.6-0.3
Time >=10cm from walls, locomotor time 20.10.20.40.30.50.6-0.1
Bouts of movement, locomotor time 20.81.31.8-1.4-1.2-0.6-1.3
Total resting periods, locomotor time 20.61.01.7-1.0-1.1-0.5-1.3
Rest time, locomotor task time 20.00.00.1-0.20.10.0-0.3
Distance moved, locomotor task time 20.10.10.20.40.2-0.4-0.0
Vertical activity count, locomotor time 20.20.20.50.4-0.4-0.7-0.4
Light reinforcement 10.20.51.21.1-0.2-0.3-0.9
Light reinforcement 21.01.53.21.80.91.01.0
Bone: marrow area0.30.71.0-0.3-1.0-1.0-0.8
Bone: maximum diameter2.24.14.62.21.82.02.1
Bone: maximum force3.56.210.43.22.42.02.1
Bone: maximum moment4.27.411.73.42.72.22.3
Mean time between licks in bursts0.61.62.6-1.6-1.2-1.1-1.0
Mean num. licks in bursts0.40.60.90.40.90.91.0
Cd content in liver2.32.63.0-1.2-1.7-1.7-1.7
Co content in liver0.10.10.10.20.40.30.3
Cu content in liver2.12.42.91.21.61.61.7
Fe content in liver1.01.21.9-0.7-1.0-1.4-1.1
K content in liver0.50.51.71.30.20.2-0.1
Mg content in liver0.70.71.20.5-0.9-0.7-1.1
Mn content in liver0.20.20.40.50.40.70.3
Na content in liver0.10.10.20.1-0.4-0.3-0.5
Rb content in liver0.30.41.51.2-0.00.10.3
Se content in liver0.10.10.20.5-0.0-0.3-0.2
Sr content in liver0.30.30.4-0.30.60.60.6
Zn content in liver1.31.42.31.51.01.21.0
Bone: minimum diameter3.66.58.42.92.52.32.5
Time in familiar zone, hab. session 10.10.10.1-0.30.0-0.2-0.3
Time in novel zone, hab. session 10.00.00.00.2-0.10.20.2
Total zone transitions, hab. session 10.91.21.4-0.9-1.1-1.2-1.1
Total locomotion distance, hab. session 10.30.40.6-0.1-0.7-0.8-0.6
Locomotion velocity, hab. session 10.20.30.5-0.0-0.7-0.7-0.5
Time in familiar zone, hab. session 20.91.01.1-0.9-1.0-1.1-1.0
Time in novel zone, hab. session 20.00.00.10.10.20.30.2
Total zone transitions, hab. session 21.52.03.1-0.8-1.8-1.5-1.3
Total locomotion distance, hab. session 20.40.61.20.3-1.1-0.8-0.6
Locomotion velocity, hab. session 20.30.40.70.6-0.8-0.6-0.3
Novel to familiar place preference ratio3.03.33.61.81.81.91.8
Novelty place preference3.23.43.81.71.82.01.9
Time in novel zone, NPP test2.42.62.91.51.51.71.6
Total zone transitions, NPP test2.53.64.8-1.0-2.1-2.2-2.1
Total locomotion distance, NPP test1.92.63.6-0.2-1.8-1.9-1.9
Locomotion velocity, NPP test1.21.72.40.0-1.3-1.6-1.5
Intraocular pressure0.10.10.40.70.0-0.3-0.1
Delta distance traveled before/after self-admin1.31.42.0-0.8-1.1-1.3-1.4
Delta ambulatory time before/after self-admin2.32.93.8-1.4-1.5-1.8-1.9
Parametrial fat weight0.20.51.51.20.40.10.5
Pavlov. Cond. lever latency4.86.07.4-1.7-2.5-2.7-2.7
Pavlov. Cond. magazine entry latency3.14.05.51.82.41.91.9
Pavlov. Cond. change in total contacts1.31.41.90.51.41.31.3
Pavlov. Cond. index score5.36.77.42.42.72.62.7
Pavlov. Cond. latency score5.77.28.32.32.82.82.9
Pavlov. Cond. lever contacts2.83.34.01.41.81.92.0
Pavlov. Cond. magazine entry number4.05.17.3-1.8-2.7-2.2-2.2
Pavlov. Cond. intertrial magazine entries0.50.61.20.3-0.7-0.9-1.1
Pavlov. Cond. lever-magazine prob. diff.4.86.06.72.32.62.42.5
Pavlov. Cond. response bias3.84.66.21.72.52.22.2
Pavlov. Cond. lever latency0.40.50.7-0.70.50.90.8
Pavlov. Cond. magazine entry latency3.74.44.9-1.8-2.2-2.2-2.2
Pavlov. Cond. change in total contacts1.62.63.6-0.9-1.6-1.9-1.8
Pavlov. Cond. index score1.52.02.8-0.7-1.4-1.7-1.6
Pavlov. Cond. latency score1.51.92.7-0.7-1.4-1.6-1.6
Pavlov. Cond. lever contacts0.50.71.20.4-0.7-1.1-1.0
Pavlov. Cond. magazine entry number2.83.43.91.51.92.02.0
Pavlov. Cond. intertrial magazine entries0.71.12.51.60.90.70.7
Pavlov. Cond. lever-magazine prob. diff.1.82.33.1-1.0-1.6-1.8-1.7
Pavlov. Cond. response bias1.11.52.1-0.4-1.3-1.5-1.4
Time in closed arm before self-admin0.20.20.9-0.90.10.2-0.0
Time in closed arm after self-admin0.20.20.6-0.80.1-0.0-0.2
Time in open arm before self-admin0.20.20.91.00.0-0.1-0.0
Time in open arm after self-admin0.10.10.3-0.0-0.5-0.3-0.2
Bone: periosteal estimation1.12.44.32.11.41.21.3
Bone: periosteal perimeter5.89.911.13.03.33.13.2
Bone: post-yield work0.10.10.3-0.2-0.5-0.4-0.4
Progressive ratio test 1 active lever presses0.20.20.40.50.20.60.5
Progressive ratio test 1 breakpoint0.20.30.50.60.30.70.6
Progressive ratio test 1 inactive lever presses0.81.23.51.90.60.80.5
Progressive ratio test 2 active lever presses0.00.00.10.30.10.0-0.2
Progressive ratio test 2 breakpoint0.00.00.10.30.10.1-0.2
Progressive ratio test 2 inactive lever presses0.40.71.10.70.71.00.8
Incentive Sensitization - Responses0.20.30.60.30.1-0.7-0.7
Incentive Sensitization - Breakpoint0.20.20.50.20.1-0.6-0.7
Sum of active levers in priming session hrs 5-61.11.02.2-0.30.41.31.5
Progressive ratio0.30.51.2-1.1-0.7-0.2-0.6
Food seeking constrained by brief footshock0.10.10.2-0.40.30.40.3
Seeking ratio, punishment vs. effort0.00.10.10.2-0.0-0.4-0.2
Retroperitoneal fat weight1.14.513.03.61.61.01.2
Reaction time number correct3.15.99.4-0.3-2.5-3.1-2.8
Reaction time mean minus median0.10.30.50.00.60.70.5
Reaction time mean minus median AUC0.10.30.50.60.60.70.3
Reaction time num false alarms0.30.40.6-0.7-0.5-0.8-0.6
Reaction time num false alarms AUC0.50.80.9-0.9-0.8-0.9-1.0
Reaction time trials correct on left3.15.99.4-0.3-2.5-3.1-2.8
Reaction time trials on left3.26.09.6-0.3-2.5-3.1-2.8
Reaction time mean0.10.10.30.60.0-0.3-0.3
Reaction time mean AUC0.20.30.40.5-0.3-0.5-0.7
Median of all reaction times0.20.30.30.6-0.2-0.5-0.6
Reaction time omissions0.20.20.80.90.20.10.1
Reaction time false alarm rate0.30.40.6-0.70.50.80.6
Reaction time premature initiation rate1.11.53.4-1.8-1.2-0.8-0.8
Reaction time premature initiations2.85.05.7-1.8-2.4-2.4-2.3
Std. dev. reaction times0.20.40.5-0.5-0.6-0.6-0.7
Reaction time trials completed3.26.09.6-0.3-2.5-3.1-2.8
Reaction time trials AUC3.15.99.6-0.3-2.5-3.1-2.8
Run reversals in cocaine runway, females3.03.03.2-1.7-1.8-1.7-1.8
Run reversals in cocaine runway, males3.53.55.51.41.72.41.9
Latency to leave start box in cocaine runway0.80.91.5-0.8-0.8-1.2-0.9
Latency to leave start box in cocaine runway, F1.31.52.2-0.6-1.3-1.3-1.5
Latency to leave start box in cocaine runway, M0.10.10.2-0.50.2-0.50.2
Std. dev. time between licks in bursts1.62.13.20.1-1.5-1.8-1.8
Total sessions with >9 infusions0.10.10.2-0.2-0.40.4-0.5
Short access day 1 total inactive lever presses0.10.10.20.5-0.10.20.0
Short access day 10 total inactive lever presses0.51.33.41.81.10.30.7
Short access day 1 total infusions1.01.31.8-1.4-1.2-0.6-1.3
Short access day 10 total infusions1.21.52.31.11.11.51.2
Short access total infusions0.00.00.1-0.1-0.20.3-0.1
Short access day 1 locomotion0.10.10.3-0.6-0.00.4-0.1
Short access day 10 total locomotion0.71.32.40.21.01.61.3
Short access total locomotion0.81.02.40.30.81.60.9
One hour access (0.3 mA shock)0.10.10.10.2-0.2-0.3-0.4
Compulsive drug intake0.40.50.90.7-0.3-1.0-0.7
One hour access (shock baseline)0.00.00.10.20.20.2-0.2
Social response proportion0.30.40.7-0.5-0.8-0.7-0.5
Social responses0.10.10.2-0.1-0.4-0.4-0.2
Social time0.10.20.3-0.2-0.5-0.5-0.5
Soleus weight1.23.65.62.41.81.81.6
Bone: stiffness0.30.50.91.00.50.60.7
Tibialis anterior weight0.00.10.20.1-0.50.1-0.1
Time to tail flick, vehicle, before self-admin0.00.00.1-0.3-0.10.0-0.0
Time to tail flick, vehicle, after self-admin0.20.30.8-0.9-0.7-0.1-0.0
Time to tail flick, test, before self-admin0.10.10.3-0.30.10.50.2
Time to tail flick, test, after self-admin0.40.40.8-0.40.20.90.8
Delta time to tail flick, vehicle, before/after SA0.00.00.10.2-0.3-0.2-0.0
Delta time to tail flick, test, before/after SA0.10.10.2-0.50.10.10.5
Tibia length9.526.135.56.05.54.44.3
Ambulatory time before self-admin2.53.75.81.91.51.82.4
Ambulatory time after self-admin0.10.20.30.5-0.0-0.00.6
Bone: tissue strength1.01.02.31.50.80.80.7
Total heroin consumption1.01.22.30.50.71.31.5
Bone: trabecular number0.10.10.20.20.20.40.5
Bone: trabecular spacing1.62.23.3-0.1-1.6-1.7-1.8
Bone: trabecular thickness2.02.53.51.01.91.61.7
Bone: trabecular tissue density0.50.71.4-1.2-0.9-0.7-0.6
Water consumed over 24 hours0.71.01.50.21.01.21.2
Number of responses in last shaping day0.20.30.60.60.30.80.2