L3mbtl2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression L3mbtl2 0.02 0.01 7.3e-03 0 0.01 0 0.01 8.6e-02 1.2e-02 1.3e-01 5.5e-02
2 BLA intron excision ratio chr7_113189083_113190289 0.05 0.04 6.9e-03 -0 0 -0 -0 7.7e-01 1.9e-01 9.6e-01 9.1e-01
3 RMTg gene expression L3mbtl2 0.29 0.16 1.0e-02 0.09 0.11 0.01 0.1 2.8e-03 6.3e-04 1.3e-01 1.5e-03
4 Brain gene expression L3mbtl2 0.08 0.05 3.2e-03 0.03 0.03 0.04 0.03 4.3e-04 4.0e-04 1.4e-04 5.1e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.40.6-0.40.60.7-0.7
Area under the delay curve1.21.32.4-1.00.3-1.51.3
BMI with tail1.13.66.02.5-2.31.3-1.2
BMI without tail0.91.83.60.80.01.7-1.9
Body weight1.14.88.42.9-2.91.4-0.6
Weight adjusted by age0.10.20.5-0.1-0.1-0.30.7
Bone surface0.20.30.6-0.80.4-0.30.7
Bone volume0.00.00.1-0.20.10.30.0
Breakpoint value in progressive ratio session0.30.40.9-0.00.20.7-0.9
Number of licking bursts1.31.52.3-1.40.7-1.51.1
Context. condit. distance diff. score3.34.09.43.1-2.60.10.1
Locomotion velocity, session 11.31.53.3-0.8-0.1-1.41.8
Locomotion distance, session 13.54.46.7-2.61.6-2.02.1
Locomotion velocity, session 20.10.10.20.4-0.50.4-0.0
Locomotion distance, session 21.92.66.4-2.51.5-1.00.9
Locomotion velocity, session 30.30.40.80.2-0.2-0.80.9
Locomotion distance, session 33.23.55.5-1.71.2-2.32.1
Stereotopy head waving bouts, day 30.70.91.21.1-1.10.9-0.2
Stereotopy head waving duration, day 33.23.85.92.4-2.02.0-1.1
Locomotion velocity, session 70.20.30.40.4-0.4-0.50.7
Locomotion distance, session 70.40.61.1-0.4-0.1-1.11.0
Stereotopy head waving bouts, day 71.41.63.51.9-1.50.9-0.1
Stereotopy head waving duration, day 71.72.04.12.0-1.21.4-0.8
Locomotion velocity, session 80.91.12.81.2-1.7-0.10.6
Locomotion distance, session 80.30.51.21.1-0.8-0.10.0
Degree of sensitization distance3.53.54.82.2-1.71.9-1.7
Degree of sensitization stereotypy0.70.81.81.3-1.10.20.3
Conditioned locomotion0.20.30.70.9-0.70.0-0.0
Cocaine response after cond. corrected0.00.00.10.3-0.20.30.1
Cocaine response after cond. not corrected0.20.20.50.30.00.7-0.5
Cocaine response before conditioning0.30.30.7-0.20.60.4-0.8
Saline control response0.10.10.20.10.50.0-0.3
Bone: connectivity density0.10.10.2-0.30.30.5-0.2
Bone: cortical apparent density1.01.31.8-1.30.8-1.40.9
Bone: cortical area1.01.53.01.6-1.70.7-0.2
Bone: cortical porosity1.71.83.11.3-0.61.8-1.4
Bone: cortical porosity2.42.64.01.8-1.12.0-1.3
Bone: cortical thickness0.10.20.70.3-0.9-0.20.1
Bone: cortical thickness0.30.40.80.1-0.9-0.70.5
Bone: cortical tissue density1.01.32.0-1.30.8-1.41.0
Condit. Reinf. active minus inactive responses0.20.20.4-0.70.2-0.60.4
Condit. Reinf. active-inactive response ratio0.20.20.30.3-0.5-0.50.4
Condit. Reinf. active responses0.80.91.8-1.31.3-0.3-0.4
Condit. Reinf. inactive responses1.72.04.3-1.62.10.0-0.9
Incentive salience index mean0.30.40.9-1.00.5-0.60.2
Condit. Reinf. lever presses0.30.41.0-1.00.8-0.0-0.3
Condit. Reinf. active minus inactive responses0.91.11.8-0.7-0.4-1.31.3
Condit. Reinf. active-inactive response ratio0.30.30.5-0.2-0.6-0.50.7
Condit. Reinf. active responses0.81.12.0-0.0-1.0-1.21.4
Condit. Reinf. inactive responses0.91.11.70.4-1.1-1.21.3
Condit. Reinf. lever presses0.20.20.7-0.80.5-0.20.1
Condit. Reinf. lever reinforcers received0.50.61.2-0.2-0.7-0.91.1
Conditioned reinforcement - actives2.42.44.8-0.3-0.7-2.22.0
Conditioned reinforcement - inactives0.40.51.1-0.90.1-1.10.2
Conditioned locomotion1.31.53.80.9-1.9-0.71.0
Patch foraging indifference point 0 sec0.50.71.2-0.60.71.0-1.1
Patch foraging indifference point AUC2.52.95.4-1.30.1-2.12.3
Delay disc. indifference point, 0s delay1.61.72.01.4-0.91.4-1.4
Delay disc. indifference point, 16s delay2.02.03.3-1.81.2-1.41.2
Delay disc. indifference point, 2s delay0.40.50.9-0.1-0.5-1.00.8
Delay disc. indifference point, 24s delay3.73.68.1-1.2-0.1-2.22.8
Delay disc. indifference point, 4s delay0.40.40.8-0.6-0.2-0.90.6
Delay disc. indifference point, 8s delay1.51.52.3-1.30.8-1.51.2
Indifference point function ln k1.42.03.11.8-1.01.5-1.3
Indifference point function log k1.42.03.11.8-1.01.5-1.3
Patch foraging total patch changes 0 sec0.50.81.1-0.70.80.9-1.1
Patch foraging total patch changes 12 sec0.10.10.2-0.3-0.1-0.20.4
Patch foraging total patch changes 18 sec0.10.10.3-0.60.10.10.0
Patch foraging total patch changes 24 sec0.30.30.6-0.80.5-0.50.5
Patch foraging total patch changes 6 sec0.20.41.2-1.10.3-0.10.3
Patch foraging time to switch 0 sec1.32.04.10.80.22.0-1.8
Patch foraging water rate 0 sec0.10.10.5-0.70.3-0.00.0
Patch foraging water rate 12 sec0.20.30.7-0.70.80.1-0.4
Patch foraging water rate 18 sec0.70.92.2-1.51.20.20.1
Patch foraging water rate 24 sec0.10.20.50.2-0.10.7-0.5
Patch foraging water rate 6 sec0.81.22.0-1.41.4-0.80.5
Seeking ratio, delayed vs. immediate footshock1.41.63.1-1.71.80.3-0.4
Distance traveled before self-admin0.10.10.2-0.1-0.1-0.3-0.4
Distance traveled after self-admin0.10.10.2-0.3-0.50.2-0.2
Extensor digitorum longus weight0.31.01.7-0.41.11.1-1.3
Bone: elastic displacement0.00.00.10.0-0.0-0.10.3
Bone: elastic work2.12.73.82.0-1.71.7-1.0
Bone: endosteal estimation0.61.32.11.5-1.01.4-0.4
Bone: endosteal perimeter1.32.85.42.3-1.71.6-0.5
Epididymis fat weight1.84.39.63.1-2.70.10.3
Delta time in closed arm before/after self-admin1.21.22.00.7-1.4-1.11.0
Delta time in open arm before/after self-admin0.40.30.6-0.20.80.5-0.7
Diff in mean of infusions in LGA sessions0.40.41.1-0.70.1-0.31.0
Delay discount exponential model param1.61.73.01.1-0.31.7-1.5
Extinction: sum of active levers before priming0.10.10.1-0.2-0.0-0.40.2
Active lever presses in extinction session 60.20.20.30.4-0.30.6-0.4
Bone: final force1.01.64.21.4-2.00.60.3
Bone: final moment1.11.84.51.5-2.10.60.2
Food consumed during 24 hour testing period1.11.32.91.4-1.70.6-0.0
Glucose0.91.32.6-0.20.81.5-1.6
Heart weight2.43.44.72.2-1.71.5-2.0
Delay discount hyperbolic model param1.31.42.71.0-0.11.6-1.3
Intermittent access intake day 1-15 change0.70.71.1-1.00.7-1.00.4
Intermittent access intake escalation0.60.50.9-1.00.8-0.80.1
Intermittent access intake escalation 20.20.20.4-0.50.6-0.2-0.3
Intermitt. access day 1 inactive lever presses0.50.60.90.5-0.70.8-1.0
Intermitt. access day 15 inactive lever presses0.70.71.7-0.1-0.9-1.30.6
Intermitt. access escalation Index0.00.00.1-0.2-0.10.1-0.3
Intermittent access day 1 total infusions0.60.71.60.8-1.3-0.40.5
Intermittent access day 15 total infusions0.30.41.0-0.5-0.1-1.00.6
Intermittent access terminal intake (last 3 days)0.30.30.7-0.1-0.3-0.90.6
Intermittent access total infusions0.20.20.60.4-0.8-0.20.3
Intermittent access day 1 locomotion0.30.40.70.7-0.80.4-0.3
Intermittent access day 15 total locomotion0.10.10.30.3-0.5-0.00.3
Intermittent access total locomotion0.30.41.00.7-1.00.20.0
Intermittent access standard deviation0.50.50.70.8-0.80.4-0.8
Left kidney weight6.417.939.95.5-6.30.11.0
Right kidney weight6.919.344.35.6-6.70.11.1
Cocaine induced anxiety1.72.02.81.6-1.21.7-1.0
Post-drug Anxiety0.70.81.50.8-0.71.2-0.7
Baseline Anxiety1.41.42.6-1.61.3-1.00.6
Tail length0.10.40.8-0.40.90.5-0.6
Length with tail0.20.71.41.0-1.20.20.5
Length without tail1.02.14.11.2-2.0-0.71.6
Times rat made contact with spout0.80.91.30.2-1.0-1.11.1
Lifetime Intake0.50.61.70.7-1.3-0.20.3
Liver weight, left0.40.61.71.3-0.90.3-0.1
Liver weight, right1.32.25.82.4-1.70.3-0.0
Locomotor activity1.11.73.41.9-1.60.8-0.4
Locomotor testing distance0.00.00.1-0.20.2-0.30.0
Locomotor testing rearing0.71.22.51.6-1.40.1-0.2
Locomotion in novel chamber1.01.22.2-1.21.5-1.1-0.5
Locomotion in novel chamber post-restriction0.40.51.3-0.91.1-0.2-0.1
Fecal boli incidents, locomotor time 10.20.20.4-0.70.40.20.3
Change in fecal boli incidents, locomotor task2.22.14.1-0.1-0.7-1.92.0
Time >=10cm from walls, locomotor time 10.30.30.80.5-0.50.9-0.2
Bouts of movement, locomotor time 10.50.50.90.6-0.8-0.31.0
Total resting periods, locomotor time 10.20.20.40.4-0.6-0.10.6
Rest time, locomotor task time 10.20.20.60.5-0.8-0.1-0.1
Distance moved, locomotor task time 10.30.30.80.9-0.40.5-0.4
Vertical activity count, locomotor time 10.20.30.60.20.10.8-0.6
Time >=10cm from walls, locomotor time 20.10.10.4-0.20.10.6-0.3
Bouts of movement, locomotor time 20.20.30.60.6-0.70.1-0.2
Total resting periods, locomotor time 20.20.20.50.4-0.7-0.0-0.0
Rest time, locomotor task time 20.50.61.0-0.70.1-1.00.9
Distance moved, locomotor task time 20.60.71.41.2-0.70.5-0.8
Vertical activity count, locomotor time 20.50.50.80.9-0.60.9-0.6
Light reinforcement 10.00.00.00.1-0.10.10.0
Light reinforcement 20.60.71.81.3-0.90.5-0.4
Bone: marrow area0.71.42.31.5-1.11.4-0.4
Bone: maximum diameter2.64.78.62.9-2.91.4-0.4
Bone: maximum force1.72.96.82.0-2.60.80.1
Bone: maximum moment1.83.17.42.1-2.70.80.1
Mean time between licks in bursts0.30.40.9-0.60.90.2-0.7
Mean num. licks in bursts1.11.32.61.6-1.60.30.0
Cd content in liver0.30.40.80.9-0.8-0.10.0
Co content in liver0.20.20.40.5-0.70.2-0.2
Cu content in liver2.12.55.3-2.12.30.2-0.7
Fe content in liver1.11.32.90.70.11.7-1.4
K content in liver0.40.41.0-1.00.7-0.2-0.0
Mg content in liver0.60.61.3-1.20.90.2-0.6
Mn content in liver0.50.61.3-0.0-0.3-1.11.0
Na content in liver1.51.63.4-1.61.80.2-0.6
Rb content in liver0.10.10.1-0.3-0.1-0.30.3
Se content in liver0.50.71.4-1.01.2-0.50.2
Sr content in liver0.80.71.0-0.91.0-0.80.4
Zn content in liver0.70.71.6-1.11.30.0-0.2
Bone: minimum diameter0.51.01.71.3-1.01.0-0.5
Time in familiar zone, hab. session 11.21.12.5-0.4-0.5-1.31.6
Time in novel zone, hab. session 12.72.64.31.4-0.32.0-2.1
Total zone transitions, hab. session 14.86.79.5-3.12.3-2.72.2
Total locomotion distance, hab. session 12.33.34.2-2.01.8-1.91.5
Locomotion velocity, hab. session 12.43.55.1-2.31.9-1.81.4
Time in familiar zone, hab. session 20.00.00.10.30.2-0.2-0.1
Time in novel zone, hab. session 20.00.00.1-0.1-0.30.20.1
Total zone transitions, hab. session 21.72.23.8-2.00.8-1.51.4
Total locomotion distance, hab. session 20.60.81.9-1.40.9-0.40.2
Locomotion velocity, hab. session 21.01.33.2-1.81.3-0.60.3
Novel to familiar place preference ratio1.21.22.71.6-1.40.50.0
Novelty place preference1.61.63.61.9-1.70.30.3
Time in novel zone, NPP test2.02.14.42.1-1.90.30.3
Total zone transitions, NPP test4.56.39.3-3.02.0-2.72.2
Total locomotion distance, NPP test1.72.34.0-2.01.4-1.41.1
Locomotion velocity, NPP test2.02.85.2-2.31.8-1.41.0
Intraocular pressure0.50.71.40.5-0.7-0.91.2
Delta distance traveled before/after self-admin0.40.41.0-0.0-0.8-0.21.0
Delta ambulatory time before/after self-admin0.40.51.1-0.1-0.8-0.11.0
Parametrial fat weight0.10.10.20.5-0.5-0.10.0
Pavlov. Cond. lever latency0.50.61.21.1-1.10.00.2
Pavlov. Cond. magazine entry latency0.40.51.4-1.20.7-0.50.3
Pavlov. Cond. change in total contacts0.80.82.3-1.50.7-0.70.3
Pavlov. Cond. index score0.20.20.6-0.80.3-0.40.2
Pavlov. Cond. latency score0.10.20.5-0.70.4-0.1-0.0
Pavlov. Cond. lever contacts0.60.71.3-1.21.1-0.1-0.3
Pavlov. Cond. magazine entry number0.50.61.11.0-0.50.9-0.7
Pavlov. Cond. intertrial magazine entries0.60.71.7-1.31.0-0.20.0
Pavlov. Cond. lever-magazine prob. diff.0.30.41.0-1.00.5-0.60.4
Pavlov. Cond. response bias0.40.41.1-1.10.6-0.40.2
Pavlov. Cond. lever latency1.01.31.61.0-1.1-1.21.3
Pavlov. Cond. magazine entry latency1.72.04.1-2.01.80.5-0.6
Pavlov. Cond. change in total contacts0.70.91.9-0.80.31.4-1.0
Pavlov. Cond. index score1.21.63.0-1.71.50.6-0.8
Pavlov. Cond. latency score1.51.83.8-1.91.70.5-0.7
Pavlov. Cond. lever contacts1.01.31.8-0.91.11.2-1.3
Pavlov. Cond. magazine entry number0.81.02.31.5-1.2-0.20.3
Pavlov. Cond. intertrial magazine entries1.31.73.91.6-2.0-0.60.5
Pavlov. Cond. lever-magazine prob. diff.1.31.72.7-1.61.60.8-0.9
Pavlov. Cond. response bias0.81.11.2-1.11.01.1-1.1
Time in closed arm before self-admin5.05.77.1-1.62.52.7-2.6
Time in closed arm after self-admin0.70.71.10.9-0.71.0-0.8
Time in open arm before self-admin0.50.51.20.1-0.1-1.01.1
Time in open arm after self-admin0.20.20.7-0.10.90.2-0.3
Bone: periosteal estimation1.22.43.92.0-1.71.5-0.5
Bone: periosteal perimeter2.64.38.22.9-2.51.6-0.6
Bone: post-yield work0.10.20.70.1-0.80.00.2
Progressive ratio test 1 active lever presses0.50.51.00.4-1.0-0.60.8
Progressive ratio test 1 breakpoint0.50.50.80.3-0.8-0.70.9
Progressive ratio test 1 inactive lever presses0.50.51.20.6-0.70.3-1.1
Progressive ratio test 2 active lever presses1.51.63.3-0.7-0.3-1.81.6
Progressive ratio test 2 breakpoint1.01.12.1-0.5-0.5-1.41.4
Progressive ratio test 2 inactive lever presses0.70.81.8-1.00.4-1.30.4
Incentive Sensitization - Responses1.11.12.4-1.00.4-1.50.9
Incentive Sensitization - Breakpoint1.01.02.5-0.90.1-1.60.9
Sum of active levers in priming session hrs 5-60.30.30.60.20.20.8-0.7
Progressive ratio0.30.40.7-0.10.40.7-0.8
Food seeking constrained by brief footshock0.81.02.41.1-1.6-0.60.5
Seeking ratio, punishment vs. effort0.60.81.40.6-1.2-0.80.8
Retroperitoneal fat weight2.47.915.94.0-3.90.70.3
Reaction time number correct1.01.51.8-1.31.3-1.21.0
Reaction time mean minus median0.30.40.70.6-0.10.7-0.8
Reaction time mean minus median AUC0.70.91.91.4-0.70.8-0.9
Reaction time num false alarms0.20.30.50.20.40.6-0.7
Reaction time num false alarms AUC0.10.10.4-0.20.60.1-0.3
Reaction time trials correct on left1.01.51.8-1.31.3-1.21.0
Reaction time trials on left1.11.62.0-1.41.3-1.21.1
Reaction time mean0.40.61.40.10.50.9-1.2
Reaction time mean AUC0.20.30.80.00.40.6-0.9
Median of all reaction times0.40.51.1-0.20.70.7-1.0
Reaction time omissions0.30.30.6-0.70.8-0.60.2
Reaction time false alarm rate0.40.51.00.6-0.10.8-1.0
Reaction time premature initiation rate0.50.72.1-0.30.21.4-0.8
Reaction time premature initiations0.20.30.5-0.70.50.7-0.1
Std. dev. reaction times0.40.50.80.9-0.40.6-0.9
Reaction time trials completed1.11.62.0-1.41.3-1.21.1
Reaction time trials AUC0.81.11.4-1.21.1-1.00.9
Run reversals in cocaine runway, females0.50.50.8-0.90.9-0.50.6
Run reversals in cocaine runway, males2.01.94.60.2-0.8-1.62.2
Latency to leave start box in cocaine runway0.40.40.80.9-0.40.6-0.5
Latency to leave start box in cocaine runway, F0.20.20.4-0.20.60.5-0.4
Latency to leave start box in cocaine runway, M1.51.43.11.8-1.50.4-0.4
Std. dev. time between licks in bursts0.70.81.8-1.41.10.3-0.4
Total sessions with >9 infusions1.21.33.61.0-1.9-0.40.7
Short access day 1 total inactive lever presses0.50.51.70.5-1.3-0.30.1
Short access day 10 total inactive lever presses0.10.20.40.5-0.6-0.1-0.2
Short access day 1 total infusions0.80.92.50.9-1.6-0.5-0.0
Short access day 10 total infusions1.01.11.81.2-1.40.9-0.3
Short access total infusions1.51.74.61.5-2.10.2-0.1
Short access day 1 locomotion0.30.30.50.4-0.60.3-0.7
Short access day 10 total locomotion1.01.23.20.50.11.1-1.8
Short access total locomotion1.21.32.21.3-1.50.7-0.8
One hour access (0.3 mA shock)0.50.61.1-0.80.5-1.00.5
Compulsive drug intake3.63.65.0-2.21.4-1.91.9
One hour access (shock baseline)0.30.40.60.7-0.30.5-0.8
Social response proportion2.72.95.41.0-0.22.3-2.3
Social responses0.10.10.2-0.40.3-0.10.3
Social time1.01.32.8-1.71.5-0.4-0.2
Soleus weight0.61.62.5-1.40.4-1.61.4
Bone: stiffness1.42.23.91.8-2.01.3-0.6
Tibialis anterior weight0.31.02.1-1.51.4-0.0-0.4
Time to tail flick, vehicle, before self-admin0.10.10.4-0.2-0.0-0.10.7
Time to tail flick, vehicle, after self-admin0.50.61.7-0.71.30.20.1
Time to tail flick, test, before self-admin0.40.40.90.0-0.0-0.81.0
Time to tail flick, test, after self-admin0.60.71.4-1.11.2-0.0-0.2
Delta time to tail flick, vehicle, before/after SA0.40.40.80.00.50.7-0.9
Delta time to tail flick, test, before/after SA1.61.52.8-1.61.70.2-0.7
Tibia length0.51.53.20.9-1.8-0.51.2
Ambulatory time before self-admin0.40.41.4-0.50.2-1.2-0.0
Ambulatory time after self-admin0.60.61.8-1.30.4-0.60.4
Bone: tissue strength0.10.10.20.3-0.40.20.1
Total heroin consumption0.10.20.4-0.1-0.4-0.20.7
Bone: trabecular number0.00.00.10.30.00.00.0
Bone: trabecular spacing0.70.92.40.8-1.6-0.20.6
Bone: trabecular thickness0.60.71.60.10.71.0-1.3
Bone: trabecular tissue density1.31.92.3-1.11.51.4-1.5
Water consumed over 24 hours0.50.61.00.3-1.0-0.60.9
Number of responses in last shaping day0.60.71.1-0.80.60.7-1.0