Krt80

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Krt80 0.09 0.07 4.1e-05 0.02 0.03 0.02 0.02 2.3e-03 7.1e-04 1.9e-03 2.8e-03
2 BLA gene expression Krt80 0.06 0.05 3.3e-03 0.01 0.02 0.02 0.02 1.2e-01 2.8e-02 2.6e-02 4.8e-02
3 PL gene expression Krt80 0.06 0.03 4.4e-09 0.07 0.08 0.07 0.07 1.9e-08 8.5e-09 1.1e-08 1.6e-08
4 Adipose mRNA stability Krt80 0.15 0.09 0.0e+00 0.15 0.16 0.15 0.16 1.1e-16 3.3e-17 1.2e-16 3.9e-17

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.10.2-0.40.4-0.4
Area under the delay curve0.10.20.30.3-0.50.4-0.3
BMI with tail2.37.58.62.5-2.62.8-2.9
BMI without tail0.30.60.90.8-0.40.9-1.0
Body weight0.62.53.31.2-1.61.7-1.8
Weight adjusted by age0.70.81.20.2-1.01.0-1.1
Bone surface0.20.30.70.8-0.40.6-0.5
Bone volume0.30.60.90.9-0.50.8-0.7
Breakpoint value in progressive ratio session0.30.30.40.60.6-0.30.5
Number of licking bursts0.10.10.20.4-0.20.2-0.2
Context. condit. distance diff. score0.20.20.50.40.7-0.30.3
Locomotion velocity, session 13.33.54.5-2.12.0-1.81.6
Locomotion distance, session 10.40.50.9-0.90.7-0.60.4
Locomotion velocity, session 22.02.34.4-2.11.3-1.41.2
Locomotion distance, session 20.60.81.3-1.10.8-0.80.7
Locomotion velocity, session 34.35.05.9-2.42.2-2.22.1
Locomotion distance, session 34.44.85.2-2.32.1-2.22.1
Stereotopy head waving bouts, day 31.82.12.71.6-1.21.5-1.5
Stereotopy head waving duration, day 30.10.10.20.40.10.3-0.3
Locomotion velocity, session 71.41.52.0-0.61.4-1.31.4
Locomotion distance, session 73.64.65.0-2.02.2-2.22.2
Stereotopy head waving bouts, day 73.84.24.42.0-2.02.1-2.1
Stereotopy head waving duration, day 73.13.84.02.0-1.82.0-2.0
Locomotion velocity, session 80.10.10.4-0.00.6-0.30.3
Locomotion distance, session 81.21.82.4-1.21.5-1.41.3
Degree of sensitization distance0.40.40.60.8-0.30.6-0.6
Degree of sensitization stereotypy3.23.53.91.8-2.01.9-1.8
Conditioned locomotion0.30.41.2-0.31.1-0.40.3
Cocaine response after cond. corrected0.20.30.40.2-0.50.5-0.6
Cocaine response after cond. not corrected0.00.00.1-0.1-0.20.2-0.3
Cocaine response before conditioning1.51.82.2-1.01.5-1.41.5
Saline control response0.10.20.30.10.6-0.40.4
Bone: connectivity density0.10.10.2-0.50.3-0.40.4
Bone: cortical apparent density1.51.92.41.3-1.21.5-1.5
Bone: cortical area0.50.70.90.8-0.90.8-0.8
Bone: cortical porosity1.51.62.0-1.31.4-1.31.2
Bone: cortical porosity1.41.61.9-1.21.4-1.21.2
Bone: cortical thickness0.10.20.40.3-0.60.4-0.4
Bone: cortical thickness0.50.51.6-1.30.3-0.60.5
Bone: cortical tissue density1.21.62.11.2-1.11.4-1.4
Condit. Reinf. active minus inactive responses0.10.10.3-0.50.3-0.30.2
Condit. Reinf. active-inactive response ratio0.40.40.7-0.80.4-0.60.5
Condit. Reinf. active responses0.30.40.8-0.90.5-0.50.3
Condit. Reinf. inactive responses0.20.30.5-0.70.6-0.40.2
Incentive salience index mean0.00.00.1-0.2-0.30.1-0.2
Condit. Reinf. lever presses0.81.11.50.8-1.21.0-1.1
Condit. Reinf. active minus inactive responses1.11.41.71.2-1.31.1-1.0
Condit. Reinf. active-inactive response ratio0.40.50.70.7-0.80.6-0.6
Condit. Reinf. active responses1.01.42.11.5-1.21.1-1.0
Condit. Reinf. inactive responses0.10.20.30.6-0.30.4-0.4
Condit. Reinf. lever presses0.50.70.8-0.50.9-0.90.9
Condit. Reinf. lever reinforcers received0.30.40.80.9-0.60.5-0.4
Conditioned reinforcement - actives0.20.20.60.80.00.4-0.2
Conditioned reinforcement - inactives0.00.00.0-0.10.0-0.10.2
Conditioned locomotion0.40.40.80.10.9-0.60.8
Patch foraging indifference point 0 sec0.30.50.7-0.40.8-0.80.8
Patch foraging indifference point AUC0.40.50.50.7-0.60.7-0.7
Delay disc. indifference point, 0s delay0.10.20.50.0-0.70.3-0.3
Delay disc. indifference point, 16s delay0.10.10.10.4-0.20.3-0.2
Delay disc. indifference point, 2s delay6.47.17.82.6-2.82.6-2.6
Delay disc. indifference point, 24s delay0.10.10.10.4-0.00.3-0.2
Delay disc. indifference point, 4s delay0.20.20.50.4-0.70.3-0.3
Delay disc. indifference point, 8s delay0.10.10.2-0.30.3-0.40.4
Indifference point function ln k0.00.00.0-0.10.20.0-0.2
Indifference point function log k0.00.00.0-0.10.20.0-0.2
Patch foraging total patch changes 0 sec0.81.21.6-0.81.3-1.11.2
Patch foraging total patch changes 12 sec0.10.20.40.10.6-0.40.5
Patch foraging total patch changes 18 sec0.40.50.9-0.20.9-0.70.9
Patch foraging total patch changes 24 sec0.20.20.40.40.7-0.30.5
Patch foraging total patch changes 6 sec0.10.10.3-0.00.4-0.40.5
Patch foraging time to switch 0 sec0.20.40.70.4-0.80.5-0.5
Patch foraging water rate 0 sec0.00.10.2-0.10.4-0.20.1
Patch foraging water rate 12 sec0.60.91.4-1.01.2-0.90.8
Patch foraging water rate 18 sec0.00.10.20.10.4-0.10.1
Patch foraging water rate 24 sec0.20.20.50.7-0.00.5-0.4
Patch foraging water rate 6 sec0.30.40.9-0.40.9-0.50.5
Seeking ratio, delayed vs. immediate footshock0.00.10.10.1-0.30.3-0.3
Distance traveled before self-admin0.10.10.10.10.2-0.20.3
Distance traveled after self-admin1.31.52.1-0.61.4-1.21.3
Extensor digitorum longus weight7.429.231.75.3-5.05.6-5.6
Bone: elastic displacement5.56.28.5-2.12.9-2.52.4
Bone: elastic work3.03.84.9-2.21.9-1.91.8
Bone: endosteal estimation0.20.41.01.0-0.40.6-0.5
Bone: endosteal perimeter0.71.51.71.3-1.21.2-1.2
Epididymis fat weight3.27.39.4-3.12.6-2.72.5
Delta time in closed arm before/after self-admin0.10.10.20.30.4-0.10.2
Delta time in open arm before/after self-admin4.44.25.2-2.31.9-2.02.0
Diff in mean of infusions in LGA sessions1.31.41.80.8-1.31.2-1.3
Delay discount exponential model param0.20.30.4-0.40.7-0.50.4
Extinction: sum of active levers before priming0.80.80.90.9-1.00.9-0.9
Active lever presses in extinction session 60.00.00.00.1-0.0-0.10.2
Bone: final force0.00.10.10.2-0.40.2-0.2
Bone: final moment0.00.00.10.2-0.20.1-0.1
Food consumed during 24 hour testing period0.91.11.3-0.81.2-1.11.1
Glucose0.10.10.3-0.50.1-0.20.1
Heart weight0.00.00.00.0-0.00.00.1
Delay discount hyperbolic model param0.60.60.9-0.71.0-0.70.7
Intermittent access intake day 1-15 change1.01.01.3-0.61.1-1.01.1
Intermittent access intake escalation1.21.11.6-0.41.2-1.11.3
Intermittent access intake escalation 20.80.81.2-0.40.9-0.91.1
Intermitt. access day 1 inactive lever presses0.00.00.10.2-0.0-0.10.3
Intermitt. access day 15 inactive lever presses0.60.70.8-0.70.9-0.80.8
Intermitt. access escalation Index1.00.91.61.2-0.80.9-0.7
Intermittent access day 1 total infusions0.00.00.10.30.1-0.10.2
Intermittent access day 15 total infusions0.50.60.9-0.10.8-0.80.9
Intermittent access terminal intake (last 3 days)0.20.20.40.60.4-0.30.5
Intermittent access total infusions0.20.20.50.70.2-0.20.5
Intermittent access day 1 locomotion0.70.71.1-0.21.0-0.91.0
Intermittent access day 15 total locomotion2.02.12.8-1.01.5-1.51.7
Intermittent access total locomotion1.01.11.7-0.21.3-1.11.3
Intermittent access standard deviation1.11.21.7-1.10.7-1.21.3
Left kidney weight0.10.20.40.4-0.60.4-0.4
Right kidney weight0.41.12.10.7-1.41.0-1.0
Cocaine induced anxiety0.20.20.4-0.10.6-0.50.6
Post-drug Anxiety0.20.20.70.8-0.30.3-0.2
Baseline Anxiety0.10.10.20.2-0.50.3-0.3
Tail length0.30.91.4-0.91.2-0.90.8
Length with tail0.00.10.5-0.70.2-0.30.2
Length without tail0.20.41.00.1-1.00.6-0.6
Times rat made contact with spout0.60.70.8-0.80.8-0.90.9
Lifetime Intake0.50.51.00.40.7-0.71.0
Liver weight, left0.20.30.5-0.40.7-0.60.6
Liver weight, right0.30.50.7-0.40.8-0.70.8
Locomotor activity0.10.10.2-0.30.2-0.40.5
Locomotor testing distance0.71.11.3-0.91.1-1.11.2
Locomotor testing rearing0.50.70.9-0.80.8-0.90.9
Locomotion in novel chamber1.72.12.51.6-1.21.5-1.4
Locomotion in novel chamber post-restriction0.20.20.70.8-0.0-0.10.5
Fecal boli incidents, locomotor time 13.84.14.6-2.12.0-2.01.9
Change in fecal boli incidents, locomotor task1.31.31.31.2-1.01.2-1.2
Time >=10cm from walls, locomotor time 10.50.51.1-0.51.1-0.60.5
Bouts of movement, locomotor time 10.10.10.3-0.6-0.2-0.30.2
Total resting periods, locomotor time 10.40.41.1-1.10.1-0.60.5
Rest time, locomotor task time 10.40.40.6-0.80.4-0.60.6
Distance moved, locomotor task time 10.70.71.91.4-0.40.8-0.6
Vertical activity count, locomotor time 12.02.12.91.7-1.21.5-1.3
Time >=10cm from walls, locomotor time 20.30.30.4-0.50.3-0.60.6
Bouts of movement, locomotor time 21.51.72.11.4-1.41.2-1.1
Total resting periods, locomotor time 22.42.53.01.7-1.71.5-1.4
Rest time, locomotor task time 20.00.00.1-0.1-0.20.1-0.2
Distance moved, locomotor task time 20.00.00.10.0-0.20.1-0.0
Vertical activity count, locomotor time 20.10.10.20.2-0.50.3-0.2
Light reinforcement 10.00.00.00.1-0.2-0.00.1
Light reinforcement 20.10.10.1-0.4-0.40.1-0.2
Bone: marrow area0.20.41.01.0-0.40.6-0.5
Bone: maximum diameter0.40.81.11.1-0.90.8-0.8
Bone: maximum force0.40.60.70.9-0.80.8-0.7
Bone: maximum moment0.30.50.70.9-0.60.7-0.6
Mean time between licks in bursts1.01.41.8-1.01.3-1.21.1
Mean num. licks in bursts1.01.21.4-1.21.1-1.11.0
Cd content in liver0.30.30.4-0.40.6-0.60.6
Co content in liver0.10.10.20.20.4-0.20.3
Cu content in liver0.30.31.21.1-0.30.10.1
Fe content in liver0.10.10.3-0.30.3-0.40.5
K content in liver0.20.20.3-0.50.3-0.40.4
Mg content in liver0.30.40.4-0.50.6-0.60.6
Mn content in liver0.00.00.1-0.1-0.20.2-0.3
Na content in liver0.00.00.00.1-0.1-0.00.1
Rb content in liver0.70.81.30.21.2-0.91.1
Se content in liver0.30.40.6-0.70.5-0.50.6
Sr content in liver1.51.41.5-1.21.0-1.21.2
Zn content in liver1.61.71.9-1.21.3-1.41.3
Bone: minimum diameter0.61.21.51.2-1.01.1-1.0
Time in familiar zone, hab. session 10.30.30.8-0.90.4-0.50.3
Time in novel zone, hab. session 11.71.63.01.7-0.91.2-1.1
Total zone transitions, hab. session 10.81.21.40.8-1.21.1-1.2
Total locomotion distance, hab. session 10.10.10.4-0.60.1-0.30.1
Locomotion velocity, hab. session 10.20.20.7-0.80.2-0.40.2
Time in familiar zone, hab. session 20.10.10.1-0.40.3-0.40.3
Time in novel zone, hab. session 20.60.61.01.0-0.50.7-0.7
Total zone transitions, hab. session 20.10.20.5-0.70.0-0.30.3
Total locomotion distance, hab. session 20.20.30.9-1.00.2-0.40.3
Locomotion velocity, hab. session 20.40.61.5-1.20.3-0.60.5
Novel to familiar place preference ratio1.51.62.00.9-1.31.3-1.4
Novelty place preference1.11.11.50.8-1.01.1-1.2
Time in novel zone, NPP test1.31.31.70.9-1.11.2-1.3
Total zone transitions, NPP test0.30.41.1-1.10.2-0.60.5
Total locomotion distance, NPP test1.31.84.0-2.00.7-1.21.0
Locomotion velocity, NPP test1.52.25.0-2.20.7-1.41.2
Intraocular pressure1.42.03.4-0.21.9-1.41.6
Delta distance traveled before/after self-admin2.93.23.7-1.61.9-1.81.8
Delta ambulatory time before/after self-admin2.93.23.8-1.52.0-1.81.8
Parametrial fat weight3.26.17.2-2.42.7-2.52.3
Pavlov. Cond. lever latency1.41.82.4-1.51.4-1.31.2
Pavlov. Cond. magazine entry latency3.03.94.52.1-2.01.9-1.8
Pavlov. Cond. change in total contacts3.43.74.22.0-2.01.9-1.8
Pavlov. Cond. index score3.84.85.62.3-2.42.1-2.0
Pavlov. Cond. latency score3.44.35.22.3-2.22.0-1.9
Pavlov. Cond. lever contacts1.31.51.91.4-1.41.1-1.0
Pavlov. Cond. magazine entry number1.41.72.1-1.41.4-1.21.2
Pavlov. Cond. intertrial magazine entries2.02.43.3-1.41.8-1.51.5
Pavlov. Cond. lever-magazine prob. diff.3.74.65.42.3-2.32.1-2.0
Pavlov. Cond. response bias1.41.72.01.4-1.41.2-1.2
Pavlov. Cond. lever latency1.21.61.81.1-1.31.3-1.3
Pavlov. Cond. magazine entry latency2.22.63.7-1.91.4-1.61.5
Pavlov. Cond. change in total contacts1.01.31.71.1-1.31.1-1.1
Pavlov. Cond. index score1.41.82.3-1.51.2-1.31.3
Pavlov. Cond. latency score1.21.52.0-1.41.0-1.21.2
Pavlov. Cond. lever contacts1.92.62.7-1.51.6-1.71.6
Pavlov. Cond. magazine entry number0.60.71.01.0-0.70.9-0.8
Pavlov. Cond. intertrial magazine entries1.41.83.0-0.81.7-1.31.3
Pavlov. Cond. lever-magazine prob. diff.0.81.01.6-1.30.8-1.00.9
Pavlov. Cond. response bias2.02.82.9-1.61.7-1.71.7
Time in closed arm before self-admin1.31.52.50.7-1.61.1-1.2
Time in closed arm after self-admin2.12.23.21.8-1.31.4-1.3
Time in open arm before self-admin2.12.33.01.7-1.21.5-1.5
Time in open arm after self-admin0.20.20.8-0.90.2-0.30.1
Bone: periosteal estimation0.40.81.31.1-0.80.8-0.8
Bone: periosteal perimeter1.82.93.11.8-1.61.7-1.7
Bone: post-yield work0.20.30.60.8-0.50.5-0.4
Progressive ratio test 1 active lever presses1.21.21.9-0.31.3-1.21.4
Progressive ratio test 1 breakpoint0.80.81.3-0.21.0-1.01.1
Progressive ratio test 1 inactive lever presses0.10.10.20.30.3-0.30.5
Progressive ratio test 2 active lever presses0.40.40.60.30.8-0.60.8
Progressive ratio test 2 breakpoint0.30.30.50.30.6-0.50.7
Progressive ratio test 2 inactive lever presses0.50.60.9-0.10.8-0.81.0
Incentive Sensitization - Responses0.20.20.30.5-0.20.5-0.5
Incentive Sensitization - Breakpoint0.40.40.50.7-0.40.6-0.6
Sum of active levers in priming session hrs 5-60.10.10.30.6-0.10.10.1
Progressive ratio0.10.10.2-0.00.3-0.30.5
Food seeking constrained by brief footshock0.20.20.50.30.2-0.50.7
Seeking ratio, punishment vs. effort0.00.00.00.1-0.1-0.10.1
Retroperitoneal fat weight2.06.67.7-2.42.8-2.52.6
Reaction time number correct0.71.11.9-1.01.4-0.90.7
Reaction time mean minus median0.00.00.00.0-0.1-0.10.2
Reaction time mean minus median AUC0.10.10.10.4-0.30.3-0.1
Reaction time num false alarms0.10.20.3-0.50.6-0.30.2
Reaction time num false alarms AUC0.00.00.1-0.30.10.0-0.1
Reaction time trials correct on left0.71.11.9-1.01.4-0.90.7
Reaction time trials on left0.81.11.9-1.11.4-0.90.8
Reaction time mean0.00.10.20.4-0.10.2-0.1
Reaction time mean AUC0.10.10.20.4-0.20.3-0.1
Median of all reaction times0.00.10.20.5-0.10.2-0.1
Reaction time omissions0.81.11.8-1.40.9-1.01.0
Reaction time false alarm rate0.40.50.60.6-0.80.7-0.7
Reaction time premature initiation rate1.31.82.5-1.01.2-1.51.6
Reaction time premature initiations2.23.13.4-1.51.8-1.81.8
Std. dev. reaction times0.00.10.10.2-0.40.2-0.0
Reaction time trials completed0.81.11.9-1.11.4-0.90.8
Reaction time trials AUC0.60.81.5-0.91.2-0.80.6
Run reversals in cocaine runway, females0.00.00.0-0.00.0-0.10.0
Run reversals in cocaine runway, males2.42.33.30.9-1.81.6-1.7
Latency to leave start box in cocaine runway0.40.50.60.7-0.80.7-0.6
Latency to leave start box in cocaine runway, F0.50.50.60.6-0.70.7-0.7
Latency to leave start box in cocaine runway, M0.30.20.50.7-0.50.4-0.3
Std. dev. time between licks in bursts1.31.61.9-1.41.2-1.21.2
Total sessions with >9 infusions0.30.41.01.00.4-0.10.5
Short access day 1 total inactive lever presses0.20.30.6-0.10.3-0.60.7
Short access day 10 total inactive lever presses0.10.10.2-0.20.2-0.40.5
Short access day 1 total infusions0.10.10.20.00.3-0.30.4
Short access day 10 total infusions0.30.30.60.20.5-0.60.8
Short access total infusions0.50.61.10.00.8-0.81.1
Short access day 1 locomotion0.00.00.1-0.30.1-0.10.0
Short access day 10 total locomotion0.00.00.0-0.0-0.1-0.00.0
Short access total locomotion0.00.00.00.00.0-0.10.2
One hour access (0.3 mA shock)1.01.12.91.7-0.70.9-0.6
Compulsive drug intake1.31.32.31.5-0.81.1-1.0
One hour access (shock baseline)0.40.51.11.1-0.60.6-0.3
Social response proportion1.41.62.1-1.50.9-1.31.3
Social responses0.20.30.9-0.9-0.0-0.30.3
Social time0.91.22.6-1.60.6-1.00.9
Soleus weight0.00.00.00.10.00.1-0.2
Bone: stiffness1.72.83.21.6-1.81.6-1.6
Tibialis anterior weight10.335.338.16.1-5.36.2-6.2
Time to tail flick, vehicle, before self-admin0.30.30.50.4-0.70.5-0.4
Time to tail flick, vehicle, after self-admin0.20.30.60.1-0.30.6-0.8
Time to tail flick, test, before self-admin0.90.81.50.3-1.20.9-1.0
Time to tail flick, test, after self-admin0.10.10.20.4-0.20.3-0.2
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.40.7-0.40.3
Delta time to tail flick, test, before/after SA0.10.10.10.30.4-0.10.2
Tibia length0.00.10.20.40.5-0.10.2
Ambulatory time before self-admin0.30.30.50.00.6-0.50.7
Ambulatory time after self-admin2.52.73.6-0.81.9-1.71.9
Bone: tissue strength0.80.81.41.2-0.70.8-0.7
Total heroin consumption0.30.30.60.10.7-0.60.8
Bone: trabecular number0.20.30.5-0.70.4-0.50.5
Bone: trabecular spacing0.40.61.51.2-0.30.6-0.5
Bone: trabecular thickness0.20.20.4-0.0-0.50.5-0.6
Bone: trabecular tissue density2.63.64.01.6-2.01.9-2.0
Water consumed over 24 hours1.31.62.4-0.81.5-1.31.4
Number of responses in last shaping day0.20.20.9-0.9-0.0-0.1-0.2