Krt75

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Krt75 0.03 0.03 1.1e-04 0.03 0.02 0.02 0.02 2.7e-04 1.3e-03 8.4e-04 1.5e-03
2 pVTA gene expression Krt75 0.06 0.04 3.5e-03 0.06 0.06 -0.01 0.05 1.9e-03 1.1e-03 7.3e-01 2.7e-03
3 BLA gene expression Krt75 0.08 0.08 4.7e-03 0.05 0.04 0.03 0.03 1.2e-03 3.4e-03 8.8e-03 9.1e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.2-0.3-0.20.5
Area under the delay curve0.20.20.5-0.7-0.40.2
BMI with tail2.27.07.4-2.7-2.72.5
BMI without tail0.40.71.0-0.8-0.71.0
Body weight0.62.32.7-1.6-1.41.5
Weight adjusted by age0.40.51.0-0.6-0.41.0
Bone surface0.20.40.4-0.6-0.70.5
Bone volume0.40.70.8-0.8-0.80.9
Breakpoint value in progressive ratio session0.10.10.20.0-0.3-0.4
Number of licking bursts0.00.10.1-0.2-0.4-0.0
Context. condit. distance diff. score0.00.00.10.40.0-0.2
Locomotion velocity, session 13.63.95.42.32.1-1.3
Locomotion distance, session 10.50.60.90.90.9-0.4
Locomotion velocity, session 22.12.43.41.71.9-1.0
Locomotion distance, session 20.70.91.31.11.1-0.6
Locomotion velocity, session 34.75.57.22.72.4-1.8
Locomotion distance, session 34.75.16.52.52.3-1.8
Stereotopy head waving bouts, day 31.92.22.4-1.4-1.61.5
Stereotopy head waving duration, day 30.10.10.1-0.2-0.30.3
Locomotion velocity, session 71.11.21.51.11.0-1.2
Locomotion distance, session 73.54.54.92.02.1-2.2
Stereotopy head waving bouts, day 73.64.14.6-1.9-2.12.1
Stereotopy head waving duration, day 73.13.74.2-1.7-2.02.1
Locomotion velocity, session 80.10.10.30.50.3-0.0
Locomotion distance, session 81.42.02.81.71.4-1.1
Degree of sensitization distance0.50.50.8-0.9-0.70.4
Degree of sensitization stereotypy3.03.34.0-1.6-1.92.0
Conditioned locomotion0.20.20.30.50.5-0.1
Cocaine response after cond. corrected0.20.20.3-0.5-0.30.6
Cocaine response after cond. not corrected0.00.00.0-0.2-0.00.2
Cocaine response before conditioning1.41.82.21.31.2-1.5
Saline control response0.10.10.10.20.2-0.4
Bone: connectivity density0.10.10.20.40.4-0.2
Bone: cortical apparent density1.72.32.6-1.6-1.31.6
Bone: cortical area0.40.60.9-0.9-0.90.5
Bone: cortical porosity1.51.62.01.41.4-1.0
Bone: cortical porosity1.31.41.81.31.3-0.9
Bone: cortical thickness0.10.20.3-0.6-0.40.3
Bone: cortical thickness0.40.50.80.60.9-0.4
Bone: cortical tissue density1.52.02.4-1.5-1.21.5
Condit. Reinf. active minus inactive responses0.20.20.40.60.50.1
Condit. Reinf. active-inactive response ratio0.40.40.60.70.7-0.5
Condit. Reinf. active responses0.40.50.90.90.90.1
Condit. Reinf. inactive responses0.40.40.60.80.80.3
Incentive salience index mean0.10.10.20.20.10.4
Condit. Reinf. lever presses0.70.91.1-0.8-0.91.1
Condit. Reinf. active minus inactive responses1.01.31.6-1.2-1.30.9
Condit. Reinf. active-inactive response ratio0.40.40.5-0.7-0.70.5
Condit. Reinf. active responses1.01.31.8-1.2-1.40.9
Condit. Reinf. inactive responses0.10.20.2-0.3-0.50.4
Condit. Reinf. lever presses0.40.60.80.70.6-0.9
Condit. Reinf. lever reinforcers received0.30.40.6-0.6-0.80.4
Conditioned reinforcement - actives0.30.30.5-0.7-0.70.1
Conditioned reinforcement - inactives0.00.00.10.00.1-0.3
Conditioned locomotion0.20.20.60.20.1-0.8
Patch foraging indifference point 0 sec0.30.50.70.60.5-0.8
Patch foraging indifference point AUC0.40.50.6-0.8-0.80.5
Delay disc. indifference point, 0s delay0.20.20.5-0.7-0.10.1
Delay disc. indifference point, 16s delay0.10.10.2-0.5-0.30.0
Delay disc. indifference point, 2s delay6.67.37.8-2.8-2.72.6
Delay disc. indifference point, 24s delay0.20.20.5-0.7-0.30.1
Delay disc. indifference point, 4s delay0.20.20.3-0.5-0.40.4
Delay disc. indifference point, 8s delay0.10.10.10.20.3-0.3
Indifference point function ln k0.10.10.30.30.20.5
Indifference point function log k0.10.10.30.30.20.5
Patch foraging total patch changes 0 sec0.71.11.21.11.0-1.1
Patch foraging total patch changes 12 sec0.10.10.40.10.1-0.6
Patch foraging total patch changes 18 sec0.40.51.00.50.4-1.0
Patch foraging total patch changes 24 sec0.10.10.3-0.1-0.1-0.6
Patch foraging total patch changes 6 sec0.20.30.8-0.00.1-0.9
Patch foraging time to switch 0 sec0.20.30.3-0.6-0.50.5
Patch foraging water rate 0 sec0.00.00.10.30.1-0.2
Patch foraging water rate 12 sec0.71.11.81.41.0-0.6
Patch foraging water rate 18 sec0.00.00.00.1-0.0-0.0
Patch foraging water rate 24 sec0.20.30.3-0.4-0.60.5
Patch foraging water rate 6 sec0.20.30.50.70.5-0.3
Seeking ratio, delayed vs. immediate footshock0.10.10.20.1-0.10.4
Distance traveled before self-admin0.10.10.2-0.1-0.0-0.5
Distance traveled after self-admin1.01.21.81.00.8-1.3
Extensor digitorum longus weight7.630.130.8-5.5-5.45.5
Bone: elastic displacement5.25.86.62.62.4-2.2
Bone: elastic work3.03.84.21.92.1-1.9
Bone: endosteal estimation0.20.40.6-0.7-0.80.4
Bone: endosteal perimeter0.71.41.7-1.2-1.31.0
Epididymis fat weight3.48.08.42.82.9-2.7
Delta time in closed arm before/after self-admin0.00.00.0-0.1-0.2-0.2
Delta time in open arm before/after self-admin4.13.94.81.82.2-2.0
Diff in mean of infusions in LGA sessions1.31.51.8-1.3-1.01.3
Delay discount exponential model param0.30.30.60.80.5-0.3
Extinction: sum of active levers before priming0.80.80.9-0.9-0.90.9
Active lever presses in extinction session 60.10.10.2-0.2-0.1-0.4
Bone: final force0.10.10.1-0.4-0.3-0.1
Bone: final moment0.00.10.1-0.3-0.3-0.2
Food consumed during 24 hour testing period1.01.21.61.10.9-1.2
Glucose0.10.10.20.30.4-0.1
Heart weight0.00.00.0-0.2-0.1-0.2
Delay discount hyperbolic model param0.60.71.01.00.8-0.6
Intermittent access intake day 1-15 change1.01.01.31.00.8-1.1
Intermittent access intake escalation1.11.01.90.90.7-1.4
Intermittent access intake escalation 20.80.71.50.60.6-1.2
Intermitt. access day 1 inactive lever presses0.10.10.2-0.2-0.2-0.4
Intermitt. access day 15 inactive lever presses0.60.70.80.80.9-0.8
Intermitt. access escalation Index1.21.01.5-1.0-1.20.8
Intermittent access day 1 total infusions0.10.10.1-0.3-0.3-0.3
Intermittent access day 15 total infusions0.40.51.10.40.3-1.0
Intermittent access terminal intake (last 3 days)0.20.20.4-0.2-0.3-0.6
Intermittent access total infusions0.20.30.4-0.4-0.4-0.6
Intermittent access day 1 locomotion0.50.51.10.60.4-1.0
Intermittent access day 15 total locomotion1.81.93.11.21.1-1.8
Intermittent access total locomotion0.70.81.80.50.4-1.4
Intermittent access standard deviation1.41.52.70.71.1-1.6
Left kidney weight0.10.20.2-0.4-0.40.4
Right kidney weight0.30.80.9-1.0-0.90.8
Cocaine induced anxiety0.10.20.30.50.2-0.5
Post-drug Anxiety0.20.20.5-0.4-0.70.2
Baseline Anxiety0.10.10.2-0.4-0.20.1
Tail length0.20.71.11.01.0-0.4
Length with tail0.00.10.30.20.60.0
Length without tail0.10.20.3-0.5-0.40.4
Times rat made contact with spout0.80.91.11.10.9-1.0
Lifetime Intake0.40.41.3-0.1-0.1-1.1
Liver weight, left0.20.40.50.70.5-0.6
Liver weight, right0.30.50.80.60.5-0.9
Locomotor activity0.10.20.20.40.3-0.5
Locomotor testing distance0.81.31.51.21.0-1.1
Locomotor testing rearing0.50.70.80.70.9-0.9
Locomotion in novel chamber2.02.52.9-1.7-1.61.5
Locomotion in novel chamber post-restriction0.50.60.9-1.0-0.5-0.7
Fecal boli incidents, locomotor time 14.14.55.22.32.1-2.0
Change in fecal boli incidents, locomotor task1.41.31.7-1.0-1.11.3
Time >=10cm from walls, locomotor time 10.40.40.80.90.7-0.3
Bouts of movement, locomotor time 10.10.10.20.50.4-0.2
Total resting periods, locomotor time 10.60.71.21.10.9-0.4
Rest time, locomotor task time 10.50.50.90.90.7-0.4
Distance moved, locomotor task time 10.91.01.8-1.3-1.00.4
Vertical activity count, locomotor time 12.42.53.4-1.8-1.71.2
Time >=10cm from walls, locomotor time 20.30.30.40.60.5-0.6
Bouts of movement, locomotor time 21.71.82.1-1.4-1.51.1
Total resting periods, locomotor time 22.42.62.9-1.7-1.71.4
Rest time, locomotor task time 20.00.10.10.30.00.3
Distance moved, locomotor task time 20.00.00.1-0.20.00.0
Vertical activity count, locomotor time 20.10.10.2-0.4-0.40.1
Light reinforcement 10.00.00.1-0.3-0.1-0.2
Light reinforcement 20.00.00.00.10.10.1
Bone: marrow area0.20.40.6-0.7-0.80.3
Bone: maximum diameter0.40.71.0-0.9-1.00.6
Bone: maximum force0.40.60.8-0.9-0.90.5
Bone: maximum moment0.30.50.7-0.8-0.80.4
Mean time between licks in bursts0.91.21.81.41.2-0.7
Mean num. licks in bursts0.91.11.41.11.2-0.9
Cd content in liver0.40.40.80.40.5-0.9
Co content in liver0.00.00.00.0-0.0-0.1
Cu content in liver0.20.20.7-0.2-0.80.1
Fe content in liver0.10.10.20.10.3-0.4
K content in liver0.30.30.50.40.4-0.7
Mg content in liver0.40.40.60.80.5-0.7
Mn content in liver0.00.00.1-0.1-0.00.3
Na content in liver0.00.00.00.1-0.2-0.2
Rb content in liver0.40.50.70.80.3-0.8
Se content in liver0.30.30.40.40.6-0.6
Sr content in liver1.61.41.51.11.2-1.2
Zn content in liver1.81.93.01.71.2-1.1
Bone: minimum diameter0.61.21.5-1.2-1.10.9
Time in familiar zone, hab. session 10.40.30.60.60.8-0.1
Time in novel zone, hab. session 11.71.72.4-1.4-1.60.8
Total zone transitions, hab. session 10.81.12.0-0.7-0.91.4
Total locomotion distance, hab. session 10.20.20.40.60.5-0.1
Locomotion velocity, hab. session 10.20.30.50.70.7-0.1
Time in familiar zone, hab. session 20.10.10.20.40.4-0.2
Time in novel zone, hab. session 20.60.60.7-0.8-0.80.7
Total zone transitions, hab. session 20.20.20.30.50.5-0.4
Total locomotion distance, hab. session 20.30.40.50.60.7-0.5
Locomotion velocity, hab. session 20.50.70.90.80.9-0.7
Novel to familiar place preference ratio1.61.62.8-1.0-1.01.7
Novelty place preference1.21.22.3-0.8-0.91.5
Time in novel zone, NPP test1.41.52.6-0.9-1.01.6
Total zone transitions, NPP test0.40.60.90.90.8-0.5
Total locomotion distance, NPP test1.52.12.51.41.6-1.3
Locomotion velocity, NPP test1.82.63.11.61.8-1.4
Intraocular pressure0.71.01.70.80.8-1.3
Delta distance traveled before/after self-admin2.83.13.31.81.7-1.7
Delta ambulatory time before/after self-admin2.83.13.31.81.7-1.8
Parametrial fat weight3.36.48.22.92.5-2.2
Pavlov. Cond. lever latency1.41.72.31.21.5-1.2
Pavlov. Cond. magazine entry latency2.93.74.5-1.9-2.11.7
Pavlov. Cond. change in total contacts3.23.44.2-1.8-2.01.7
Pavlov. Cond. index score3.54.55.6-2.1-2.41.8
Pavlov. Cond. latency score3.24.15.2-2.0-2.31.7
Pavlov. Cond. lever contacts1.21.41.9-1.1-1.40.9
Pavlov. Cond. magazine entry number1.21.52.01.21.4-1.0
Pavlov. Cond. intertrial magazine entries1.82.22.31.41.5-1.5
Pavlov. Cond. lever-magazine prob. diff.3.54.35.5-2.1-2.31.7
Pavlov. Cond. response bias1.31.52.1-1.3-1.40.9
Pavlov. Cond. lever latency1.21.61.7-1.3-1.21.3
Pavlov. Cond. magazine entry latency2.22.53.21.51.8-1.4
Pavlov. Cond. change in total contacts0.91.21.4-0.9-1.21.1
Pavlov. Cond. index score1.41.92.11.41.4-1.2
Pavlov. Cond. latency score1.21.51.71.31.3-1.1
Pavlov. Cond. lever contacts2.02.73.21.81.6-1.5
Pavlov. Cond. magazine entry number0.60.70.9-0.8-0.90.8
Pavlov. Cond. intertrial magazine entries1.21.51.91.21.1-1.4
Pavlov. Cond. lever-magazine prob. diff.0.91.11.31.11.1-0.9
Pavlov. Cond. response bias2.02.82.91.71.6-1.7
Time in closed arm before self-admin0.91.01.3-1.0-0.81.2
Time in closed arm after self-admin2.32.42.8-1.7-1.71.2
Time in open arm before self-admin2.32.53.1-1.5-1.81.6
Time in open arm after self-admin0.20.20.40.50.7-0.0
Bone: periosteal estimation0.40.81.1-1.0-1.00.5
Bone: periosteal perimeter1.82.93.2-1.8-1.81.6
Bone: post-yield work0.20.30.5-0.7-0.70.2
Progressive ratio test 1 active lever presses0.91.02.30.60.5-1.5
Progressive ratio test 1 breakpoint0.60.61.50.50.4-1.2
Progressive ratio test 1 inactive lever presses0.20.20.4-0.3-0.1-0.6
Progressive ratio test 2 active lever presses0.20.20.70.0-0.1-0.9
Progressive ratio test 2 breakpoint0.20.20.6-0.0-0.1-0.8
Progressive ratio test 2 inactive lever presses0.40.41.10.30.3-1.1
Incentive Sensitization - Responses0.20.20.3-0.4-0.50.6
Incentive Sensitization - Breakpoint0.40.50.5-0.6-0.70.7
Sum of active levers in priming session hrs 5-60.10.10.3-0.3-0.5-0.2
Progressive ratio0.10.10.3-0.00.1-0.5
Food seeking constrained by brief footshock0.10.20.50.0-0.2-0.7
Seeking ratio, punishment vs. effort0.00.00.00.1-0.1-0.1
Retroperitoneal fat weight2.06.77.72.52.5-2.8
Reaction time number correct0.91.22.61.61.0-0.3
Reaction time mean minus median0.20.20.4-0.5-0.1-0.6
Reaction time mean minus median AUC0.20.30.6-0.8-0.4-0.2
Reaction time num false alarms0.10.20.30.50.5-0.0
Reaction time num false alarms AUC0.00.00.00.20.20.1
Reaction time trials correct on left0.91.22.61.61.0-0.3
Reaction time trials on left0.91.32.61.61.1-0.4
Reaction time mean0.20.30.7-0.8-0.3-0.2
Reaction time mean AUC0.20.30.8-0.9-0.4-0.2
Median of all reaction times0.20.20.5-0.7-0.3-0.0
Reaction time omissions0.71.01.40.51.2-1.2
Reaction time false alarm rate0.30.50.7-0.8-0.60.6
Reaction time premature initiation rate1.41.92.91.21.2-1.7
Reaction time premature initiations2.23.23.41.91.7-1.8
Std. dev. reaction times0.20.30.6-0.8-0.3-0.5
Reaction time trials completed0.91.32.61.61.1-0.4
Reaction time trials AUC0.71.02.11.40.9-0.2
Run reversals in cocaine runway, females0.00.00.00.00.0-0.2
Run reversals in cocaine runway, males2.22.12.9-1.7-1.11.5
Latency to leave start box in cocaine runway0.40.40.6-0.7-0.60.5
Latency to leave start box in cocaine runway, F0.50.50.8-0.9-0.60.7
Latency to leave start box in cocaine runway, M0.20.20.4-0.4-0.60.1
Std. dev. time between licks in bursts1.41.72.31.51.3-1.0
Total sessions with >9 infusions0.40.40.5-0.7-0.7-0.6
Short access day 1 total inactive lever presses0.20.20.60.20.2-0.8
Short access day 10 total inactive lever presses0.20.20.30.30.3-0.6
Short access day 1 total infusions0.10.10.3-0.20.0-0.5
Short access day 10 total infusions0.20.20.70.10.0-0.8
Short access total infusions0.40.51.30.10.2-1.1
Short access day 1 locomotion0.00.00.0-0.10.2-0.0
Short access day 10 total locomotion0.00.00.0-0.00.0-0.1
Short access total locomotion0.00.00.0-0.2-0.1-0.2
One hour access (0.3 mA shock)1.41.72.5-1.6-1.50.5
Compulsive drug intake1.51.52.0-1.1-1.41.1
One hour access (shock baseline)0.70.81.4-1.2-1.00.1
Social response proportion1.31.41.81.01.3-1.2
Social responses0.10.20.40.10.6-0.3
Social time0.91.11.60.71.3-1.2
Soleus weight0.00.00.0-0.1-0.1-0.0
Bone: stiffness1.72.63.2-1.7-1.81.3
Tibialis anterior weight10.837.037.6-6.1-6.06.1
Time to tail flick, vehicle, before self-admin0.40.41.0-1.0-0.50.1
Time to tail flick, vehicle, after self-admin0.20.30.6-0.3-0.20.8
Time to tail flick, test, before self-admin0.70.61.0-1.0-0.50.8
Time to tail flick, test, after self-admin0.20.20.4-0.6-0.30.1
Delta time to tail flick, vehicle, before/after SA0.30.30.60.80.5-0.0
Delta time to tail flick, test, before/after SA0.00.00.0-0.1-0.1-0.2
Tibia length0.00.00.1-0.2-0.1-0.2
Ambulatory time before self-admin0.20.20.70.00.1-0.8
Ambulatory time after self-admin2.02.23.61.31.1-1.9
Bone: tissue strength0.90.91.2-1.1-1.10.4
Total heroin consumption0.20.20.50.20.2-0.7
Bone: trabecular number0.20.30.40.50.6-0.4
Bone: trabecular spacing0.40.50.9-0.6-0.90.6
Bone: trabecular thickness0.30.30.9-0.3-0.10.9
Bone: trabecular tissue density2.33.33.5-1.7-1.81.9
Water consumed over 24 hours1.31.62.61.01.0-1.6
Number of responses in last shaping day0.30.30.40.60.70.3