Krt75

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Krt75 0.05 0.04 3.5e-09 0.05 0.06 0.05 0.06 1.3e-08 6.2e-10 1.8e-08 2.7e-09
2 Eye intron excision ratio chr7_134573721_134573960 0.29 0.2 8.9e-03 0.09 0.06 0.03 0.06 1.6e-02 3.8e-02 1.2e-01 4.4e-02
3 BLA gene expression Krt75 0.11 0.1 3.6e-03 0.06 0.05 0.02 0.05 6.8e-04 1.0e-03 4.4e-02 8.7e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.30.60.30.4-0.8
Area under the delay curve0.00.00.10.40.0-0.1
BMI with tail1.75.96.72.42.6-2.3
BMI without tail0.72.22.71.41.6-1.4
Body weight0.52.12.71.11.6-1.5
Weight adjusted by age1.11.62.10.81.5-1.5
Bone surface0.30.50.60.70.6-0.8
Bone volume0.61.01.50.90.8-1.2
Breakpoint value in progressive ratio session0.00.10.20.4-0.0-0.0
Number of licking bursts0.10.10.30.30.5-0.1
Context. condit. distance diff. score0.00.00.00.0-0.0-0.0
Locomotion velocity, session 12.93.15.2-2.3-1.51.4
Locomotion distance, session 10.40.50.9-1.0-0.30.7
Locomotion velocity, session 22.02.44.1-2.0-1.31.2
Locomotion distance, session 20.50.81.4-1.2-0.60.7
Locomotion velocity, session 33.94.46.5-2.5-1.91.7
Locomotion distance, session 34.34.75.9-2.4-2.21.9
Stereotopy head waving bouts, day 32.32.72.81.61.6-1.7
Stereotopy head waving duration, day 30.20.20.30.30.5-0.5
Locomotion velocity, session 71.01.01.7-0.8-1.30.9
Locomotion distance, session 72.93.74.4-2.0-2.11.7
Stereotopy head waving bouts, day 75.15.76.42.32.4-2.5
Stereotopy head waving duration, day 72.93.43.71.81.9-1.9
Locomotion velocity, session 80.10.10.1-0.3-0.00.3
Locomotion distance, session 81.11.62.3-1.5-1.11.1
Degree of sensitization distance0.50.50.70.80.7-0.7
Degree of sensitization stereotypy3.23.44.11.71.8-2.0
Conditioned locomotion0.10.10.3-0.6-0.10.2
Cocaine response after cond. corrected0.10.10.30.20.6-0.2
Cocaine response after cond. not corrected0.00.00.0-0.00.20.1
Cocaine response before conditioning1.31.51.9-1.0-1.41.3
Saline control response0.00.00.1-0.0-0.40.2
Bone: connectivity density0.10.10.2-0.4-0.40.1
Bone: cortical apparent density2.43.34.31.61.7-2.1
Bone: cortical area0.40.71.01.00.8-0.7
Bone: cortical porosity1.21.31.7-1.3-1.10.9
Bone: cortical porosity1.21.31.7-1.3-1.20.9
Bone: cortical thickness0.20.30.40.60.5-0.6
Bone: cortical thickness0.50.51.1-1.0-0.60.4
Bone: cortical tissue density2.23.04.01.51.7-2.0
Condit. Reinf. active minus inactive responses0.10.10.3-0.5-0.2-0.0
Condit. Reinf. active-inactive response ratio0.30.40.5-0.7-0.60.5
Condit. Reinf. active responses0.30.30.8-0.9-0.40.0
Condit. Reinf. inactive responses0.20.30.6-0.8-0.3-0.2
Incentive salience index mean0.00.00.1-0.10.1-0.3
Condit. Reinf. lever presses0.70.91.10.90.9-1.1
Condit. Reinf. active minus inactive responses0.81.11.71.31.0-0.8
Condit. Reinf. active-inactive response ratio0.30.30.50.70.5-0.3
Condit. Reinf. active responses0.81.22.01.41.0-0.7
Condit. Reinf. inactive responses0.10.20.30.50.4-0.3
Condit. Reinf. lever presses0.50.71.0-0.5-0.91.0
Condit. Reinf. lever reinforcers received0.20.30.70.90.4-0.2
Conditioned reinforcement - actives0.10.20.30.1-0.50.5
Conditioned reinforcement - inactives0.60.91.3-0.4-1.11.1
Conditioned locomotion0.40.60.9-0.2-0.90.9
Patch foraging indifference point 0 sec0.30.60.8-0.5-0.90.9
Patch foraging indifference point AUC0.30.40.60.80.6-0.3
Delay disc. indifference point, 0s delay0.00.00.00.1-0.10.2
Delay disc. indifference point, 16s delay0.00.00.10.3-0.20.2
Delay disc. indifference point, 2s delay5.76.37.02.72.6-2.3
Delay disc. indifference point, 24s delay0.00.00.10.3-0.0-0.1
Delay disc. indifference point, 4s delay0.10.10.20.40.1-0.3
Delay disc. indifference point, 8s delay0.30.30.5-0.5-0.70.5
Indifference point function ln k0.10.30.6-0.30.3-0.7
Indifference point function log k0.10.30.6-0.30.3-0.7
Patch foraging total patch changes 0 sec0.71.21.4-1.0-1.21.2
Patch foraging total patch changes 12 sec0.20.20.50.1-0.40.7
Patch foraging total patch changes 18 sec0.30.51.0-0.2-0.61.0
Patch foraging total patch changes 24 sec0.10.20.30.3-0.40.5
Patch foraging total patch changes 6 sec0.30.40.90.2-0.51.0
Patch foraging time to switch 0 sec0.10.20.20.50.4-0.3
Patch foraging water rate 0 sec0.00.00.0-0.10.1-0.2
Patch foraging water rate 12 sec0.30.61.3-1.1-0.50.5
Patch foraging water rate 18 sec0.00.00.00.00.2-0.2
Patch foraging water rate 24 sec0.40.50.60.70.7-0.8
Patch foraging water rate 6 sec0.10.10.3-0.6-0.2-0.1
Seeking ratio, delayed vs. immediate footshock0.00.10.1-0.2-0.20.2
Distance traveled before self-admin0.10.20.2-0.0-0.50.5
Distance traveled after self-admin2.93.54.4-1.3-2.12.1
Extensor digitorum longus weight7.830.831.75.45.6-5.6
Bone: elastic displacement4.45.15.5-2.3-2.22.3
Bone: elastic work2.83.74.0-2.0-1.81.9
Bone: endosteal estimation0.10.30.50.70.5-0.5
Bone: endosteal perimeter0.51.01.21.11.1-0.7
Epididymis fat weight2.89.610.8-3.3-3.03.0
Delta time in closed arm before/after self-admin0.10.10.10.2-0.30.3
Delta time in open arm before/after self-admin3.03.04.0-2.0-1.61.5
Diff in mean of infusions in LGA sessions1.11.31.80.81.2-1.3
Delay discount exponential model param0.10.10.3-0.5-0.20.2
Extinction: sum of active levers before priming1.21.41.51.11.2-1.2
Active lever presses in extinction session 60.50.50.8-0.2-0.80.9
Bone: final force0.10.20.30.50.4-0.3
Bone: final moment0.10.10.30.50.3-0.2
Food consumed during 24 hour testing period0.70.91.3-0.9-0.91.1
Glucose0.20.30.5-0.7-0.40.6
Heart weight0.30.40.6-0.4-0.70.8
Delay discount hyperbolic model param0.20.30.5-0.7-0.40.4
Intermittent access intake day 1-15 change0.51.11.4-0.8-1.11.2
Intermittent access intake escalation0.20.40.5-0.4-0.70.7
Intermittent access intake escalation 20.60.71.0-0.6-0.91.0
Intermitt. access day 1 inactive lever presses0.10.41.21.10.2-0.2
Intermitt. access day 15 inactive lever presses0.00.10.2-0.2-0.40.3
Intermitt. access escalation Index1.42.02.61.61.3-1.3
Intermittent access day 1 total infusions0.10.20.20.2-0.50.5
Intermittent access day 15 total infusions0.10.10.20.0-0.50.5
Intermittent access terminal intake (last 3 days)0.10.10.20.3-0.40.4
Intermittent access total infusions0.20.20.30.5-0.40.4
Intermittent access day 1 locomotion0.40.60.80.1-0.90.9
Intermittent access day 15 total locomotion2.03.64.4-1.4-2.12.1
Intermittent access total locomotion1.21.42.1-0.4-1.41.4
Intermittent access standard deviation1.42.93.8-1.1-2.01.9
Left kidney weight0.00.20.30.30.5-0.4
Right kidney weight0.21.01.40.61.1-1.2
Cocaine induced anxiety0.00.00.1-0.30.0-0.0
Post-drug Anxiety0.20.20.3-0.5-0.40.4
Baseline Anxiety0.00.00.0-0.10.2-0.2
Tail length0.20.71.2-1.1-0.80.4
Length with tail0.00.20.4-0.7-0.1-0.1
Length without tail0.00.00.1-0.00.2-0.3
Times rat made contact with spout0.60.70.8-0.9-0.80.8
Lifetime Intake0.40.50.70.3-0.80.9
Liver weight, left0.10.10.10.40.2-0.4
Liver weight, right0.00.00.1-0.2-0.30.0
Locomotor activity0.20.30.4-0.3-0.60.6
Locomotor testing distance0.50.91.1-0.7-1.11.1
Locomotor testing rearing0.40.91.4-0.7-1.20.9
Locomotion in novel chamber1.21.62.41.61.0-1.1
Locomotion in novel chamber post-restriction0.30.50.60.8-0.60.7
Fecal boli incidents, locomotor time 12.43.53.9-2.0-1.81.8
Change in fecal boli incidents, locomotor task0.90.91.10.81.1-0.9
Time >=10cm from walls, locomotor time 10.40.40.8-0.9-0.50.3
Bouts of movement, locomotor time 10.20.20.3-0.5-0.5-0.0
Total resting periods, locomotor time 10.50.61.1-1.1-0.80.2
Rest time, locomotor task time 10.40.50.8-0.9-0.70.4
Distance moved, locomotor task time 10.50.71.71.30.7-0.4
Vertical activity count, locomotor time 10.92.23.31.81.4-1.2
Time >=10cm from walls, locomotor time 20.20.30.4-0.5-0.70.5
Bouts of movement, locomotor time 21.11.82.61.61.2-1.2
Total resting periods, locomotor time 21.52.63.41.81.5-1.5
Rest time, locomotor task time 20.00.00.1-0.30.2-0.0
Distance moved, locomotor task time 20.00.00.00.10.0-0.2
Vertical activity count, locomotor time 20.10.20.30.60.3-0.5
Light reinforcement 10.00.10.10.2-0.20.3
Light reinforcement 20.00.00.0-0.20.20.0
Bone: marrow area0.10.30.40.60.4-0.4
Bone: maximum diameter0.30.60.90.90.7-0.6
Bone: maximum force0.71.21.31.11.0-1.1
Bone: maximum moment0.50.91.11.10.8-1.0
Mean time between licks in bursts0.61.62.0-1.2-1.41.1
Mean num. licks in bursts0.81.31.8-1.2-1.30.8
Cd content in liver0.20.20.3-0.5-0.50.4
Co content in liver0.20.20.30.50.4-0.5
Cu content in liver0.10.10.30.6-0.20.2
Fe content in liver0.20.20.5-0.1-0.70.5
K content in liver0.00.00.00.10.10.2
Mg content in liver0.20.20.3-0.4-0.40.6
Mn content in liver0.10.10.20.10.4-0.4
Na content in liver0.10.10.20.0-0.20.4
Rb content in liver0.40.40.7-0.2-0.80.7
Se content in liver0.81.01.2-0.9-1.10.9
Sr content in liver0.30.20.4-0.7-0.40.3
Zn content in liver0.91.01.2-1.1-0.91.1
Bone: minimum diameter0.61.11.41.20.9-1.0
Time in familiar zone, hab. session 10.30.30.7-0.8-0.40.2
Time in novel zone, hab. session 11.81.82.51.61.4-1.0
Total zone transitions, hab. session 10.81.11.30.81.1-1.1
Total locomotion distance, hab. session 10.10.20.4-0.6-0.10.2
Locomotion velocity, hab. session 10.20.30.6-0.8-0.30.3
Time in familiar zone, hab. session 20.10.10.2-0.4-0.40.2
Time in novel zone, hab. session 20.60.70.80.90.8-0.7
Total zone transitions, hab. session 20.10.10.3-0.5-0.30.2
Total locomotion distance, hab. session 20.20.30.7-0.8-0.30.3
Locomotion velocity, hab. session 20.40.51.1-1.0-0.50.5
Novel to familiar place preference ratio1.82.03.31.01.3-1.8
Novelty place preference1.41.52.70.81.1-1.6
Time in novel zone, NPP test1.61.72.90.91.2-1.7
Total zone transitions, NPP test0.20.30.7-0.8-0.50.3
Total locomotion distance, NPP test1.21.62.8-1.7-1.11.0
Locomotion velocity, NPP test1.52.13.4-1.9-1.21.1
Intraocular pressure1.11.52.2-0.6-1.41.5
Delta distance traveled before/after self-admin5.25.55.8-2.2-2.42.4
Delta ambulatory time before/after self-admin4.25.15.7-2.0-2.32.4
Parametrial fat weight1.12.73.0-1.5-1.71.7
Pavlov. Cond. lever latency1.31.72.3-1.5-1.11.2
Pavlov. Cond. magazine entry latency2.43.03.61.91.7-1.6
Pavlov. Cond. change in total contacts3.84.04.22.01.9-2.0
Pavlov. Cond. index score3.84.85.92.42.1-2.0
Pavlov. Cond. latency score3.44.45.62.41.9-1.9
Pavlov. Cond. lever contacts1.51.72.41.51.2-1.2
Pavlov. Cond. magazine entry number1.62.02.6-1.6-1.41.2
Pavlov. Cond. intertrial magazine entries1.62.02.0-1.4-1.41.4
Pavlov. Cond. lever-magazine prob. diff.3.64.55.72.42.0-1.9
Pavlov. Cond. response bias1.01.31.61.31.2-0.9
Pavlov. Cond. lever latency1.41.82.01.31.4-1.4
Pavlov. Cond. magazine entry latency2.42.93.6-1.9-1.71.5
Pavlov. Cond. change in total contacts0.71.11.11.01.1-1.1
Pavlov. Cond. index score1.31.72.1-1.5-1.31.1
Pavlov. Cond. latency score1.21.62.0-1.4-1.21.1
Pavlov. Cond. lever contacts1.72.32.7-1.6-1.51.4
Pavlov. Cond. magazine entry number0.70.91.11.00.9-0.9
Pavlov. Cond. intertrial magazine entries0.91.41.7-1.1-1.11.3
Pavlov. Cond. lever-magazine prob. diff.0.91.11.5-1.2-1.10.9
Pavlov. Cond. response bias1.72.42.4-1.5-1.51.6
Time in closed arm before self-admin1.92.42.91.41.7-1.6
Time in closed arm after self-admin2.52.74.22.11.4-1.4
Time in open arm before self-admin0.80.91.21.10.8-0.8
Time in open arm after self-admin0.50.51.2-1.1-0.40.4
Bone: periosteal estimation0.40.81.21.10.8-0.8
Bone: periosteal perimeter1.32.32.61.61.5-1.4
Bone: post-yield work0.20.30.50.70.5-0.5
Progressive ratio test 1 active lever presses1.01.31.9-0.4-1.31.4
Progressive ratio test 1 breakpoint1.31.52.2-0.6-1.41.5
Progressive ratio test 1 inactive lever presses0.20.30.90.9-0.20.1
Progressive ratio test 2 active lever presses0.20.20.30.5-0.30.3
Progressive ratio test 2 breakpoint0.20.20.50.7-0.10.2
Progressive ratio test 2 inactive lever presses0.40.71.1-0.0-1.01.0
Incentive Sensitization - Responses0.50.70.91.00.8-0.8
Incentive Sensitization - Breakpoint0.71.01.31.10.9-0.9
Sum of active levers in priming session hrs 5-60.20.20.30.50.3-0.3
Progressive ratio0.10.10.20.2-0.30.4
Food seeking constrained by brief footshock0.40.40.80.3-0.90.7
Seeking ratio, punishment vs. effort0.00.00.00.0-0.2-0.1
Retroperitoneal fat weight3.012.813.9-3.4-3.63.7
Reaction time number correct0.30.71.7-1.3-0.50.3
Reaction time mean minus median0.10.20.30.4-0.30.5
Reaction time mean minus median AUC0.10.20.40.7-0.00.2
Reaction time num false alarms0.10.10.4-0.6-0.10.1
Reaction time num false alarms AUC0.00.00.1-0.40.1-0.0
Reaction time trials correct on left0.30.71.7-1.3-0.50.3
Reaction time trials on left0.40.71.8-1.3-0.50.3
Reaction time mean0.10.10.40.6-0.00.2
Reaction time mean AUC0.10.10.40.60.00.2
Median of all reaction times0.10.10.20.50.00.1
Reaction time omissions0.40.50.7-0.7-0.90.6
Reaction time false alarm rate0.20.30.40.60.6-0.5
Reaction time premature initiation rate1.31.82.2-1.0-1.51.4
Reaction time premature initiations1.52.62.7-1.7-1.61.5
Std. dev. reaction times0.10.20.40.6-0.10.4
Reaction time trials completed0.40.71.8-1.3-0.50.3
Reaction time trials AUC0.30.51.4-1.2-0.40.1
Run reversals in cocaine runway, females0.00.00.1-0.3-0.10.1
Run reversals in cocaine runway, males2.12.12.61.21.5-1.6
Latency to leave start box in cocaine runway0.20.20.20.50.3-0.4
Latency to leave start box in cocaine runway, F0.10.20.30.50.3-0.4
Latency to leave start box in cocaine runway, M0.10.10.10.30.3-0.3
Std. dev. time between licks in bursts1.42.02.1-1.5-1.41.4
Total sessions with >9 infusions0.30.30.40.6-0.60.6
Short access day 1 total inactive lever presses0.20.30.5-0.0-0.70.6
Short access day 10 total inactive lever presses0.00.10.20.50.2-0.1
Short access day 1 total infusions0.60.71.10.0-1.01.1
Short access day 10 total infusions0.10.10.30.6-0.30.2
Short access total infusions0.91.11.70.1-1.31.3
Short access day 1 locomotion0.00.10.10.3-0.10.2
Short access day 10 total locomotion0.00.10.10.4-0.20.2
Short access total locomotion0.30.30.40.5-0.60.6
One hour access (0.3 mA shock)0.60.71.71.30.4-0.4
Compulsive drug intake0.81.01.41.20.9-0.9
One hour access (shock baseline)0.10.10.40.70.0-0.0
Social response proportion1.92.12.9-1.3-1.71.3
Social responses0.20.30.4-0.6-0.60.3
Social time1.11.51.7-1.3-1.21.2
Soleus weight0.00.00.0-0.2-0.1-0.1
Bone: stiffness2.43.94.12.01.9-2.0
Tibialis anterior weight11.538.940.46.16.4-6.3
Time to tail flick, vehicle, before self-admin0.30.30.40.6-0.40.5
Time to tail flick, vehicle, after self-admin0.40.50.80.30.9-0.8
Time to tail flick, test, before self-admin0.30.30.30.50.6-0.5
Time to tail flick, test, after self-admin0.40.50.60.80.6-0.6
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.50.3-0.3
Delta time to tail flick, test, before/after SA0.00.00.00.2-0.0-0.0
Tibia length0.00.00.10.1-0.10.3
Ambulatory time before self-admin0.30.40.6-0.2-0.80.7
Ambulatory time after self-admin3.44.05.1-1.4-2.32.2
Bone: tissue strength0.80.81.51.20.8-0.5
Total heroin consumption0.10.20.30.1-0.50.4
Bone: trabecular number0.10.20.3-0.5-0.50.3
Bone: trabecular spacing0.30.40.90.90.5-0.3
Bone: trabecular thickness0.50.61.20.30.8-1.1
Bone: trabecular tissue density3.24.75.31.92.3-2.3
Water consumed over 24 hours0.81.01.6-0.8-0.91.3
Number of responses in last shaping day0.40.50.6-0.80.6-0.7