Krt71

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Krt71 0.21 0.11 6.4e-14 0.11 0.11 0.12 0.11 2.4e-12 2.6e-12 1.1e-12 2.4e-12
2 LHb gene expression Krt71 0.21 0.14 7.6e-04 0.2 0.15 0.19 0.2 1.9e-05 2.0e-04 3.2e-05 2.1e-05
3 NAcc mRNA stability Krt71 0.03 0.02 3.8e-04 0.03 0.02 0.02 0.02 4.0e-04 1.6e-03 1.0e-03 1.2e-03
4 NAcc gene expression Krt71 0.09 0.03 0.0e+00 0.19 0.18 0.19 0.19 5.0e-22 1.3e-20 1.5e-21 1.5e-21

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.41.51.20.0-0.3-0.3
Area under the delay curve0.30.30.50.70.5-0.5-0.6
BMI with tail2.68.514.43.81.6-3.0-2.9
BMI without tail0.51.12.61.60.4-0.9-0.8
Body weight0.62.64.72.20.2-1.6-1.7
Weight adjusted by age0.70.81.31.0-0.6-1.1-0.8
Bone surface0.71.23.71.90.7-0.6-0.6
Bone volume0.71.33.41.80.7-0.7-0.8
Breakpoint value in progressive ratio session0.91.01.91.41.4-0.20.1
Number of licking bursts0.30.40.9-0.90.7-0.1-0.2
Context. condit. distance diff. score0.10.10.30.30.50.30.2
Locomotion velocity, session 16.06.59.1-3.0-2.32.52.3
Locomotion distance, session 11.31.72.8-1.7-1.51.00.9
Locomotion velocity, session 23.43.95.5-2.0-2.41.71.8
Locomotion distance, session 21.31.92.9-1.7-1.41.21.1
Locomotion velocity, session 36.37.39.1-3.0-2.52.72.6
Locomotion distance, session 35.05.56.2-2.2-2.22.52.5
Stereotopy head waving bouts, day 31.82.12.41.41.5-1.5-1.4
Stereotopy head waving duration, day 30.00.00.10.10.3-0.3-0.1
Locomotion velocity, session 71.21.32.6-1.6-0.21.11.2
Locomotion distance, session 73.13.94.7-2.1-1.72.02.2
Stereotopy head waving bouts, day 72.83.23.81.51.7-1.9-2.0
Stereotopy head waving duration, day 72.53.03.71.51.9-1.7-1.8
Locomotion velocity, session 80.20.30.6-0.7-0.10.60.5
Locomotion distance, session 81.72.63.0-1.7-1.41.71.6
Degree of sensitization distance0.60.60.70.70.9-0.9-0.8
Degree of sensitization stereotypy2.32.53.11.31.8-1.6-1.7
Conditioned locomotion0.30.40.9-0.1-0.90.50.5
Cocaine response after cond. corrected0.10.10.3-0.0-0.2-0.5-0.5
Cocaine response after cond. not corrected0.10.10.1-0.4-0.4-0.2-0.2
Cocaine response before conditioning1.21.52.1-1.4-0.61.31.3
Saline control response0.00.00.1-0.30.20.20.2
Bone: connectivity density0.10.10.20.3-0.40.40.4
Bone: cortical apparent density1.21.62.60.60.9-1.6-1.6
Bone: cortical area0.81.22.81.70.6-0.9-0.9
Bone: cortical porosity1.51.62.1-0.9-1.21.41.5
Bone: cortical porosity1.41.51.9-0.9-1.21.31.4
Bone: cortical thickness0.20.30.70.80.1-0.6-0.6
Bone: cortical thickness0.91.02.7-0.8-1.60.60.5
Bone: cortical tissue density1.01.32.30.50.7-1.5-1.5
Condit. Reinf. active minus inactive responses0.40.40.5-0.5-0.70.70.6
Condit. Reinf. active-inactive response ratio0.40.50.7-0.6-0.70.80.7
Condit. Reinf. active responses0.91.11.7-0.8-1.31.01.0
Condit. Reinf. inactive responses0.91.12.0-1.0-1.40.80.8
Incentive salience index mean0.10.10.1-0.2-0.30.30.2
Condit. Reinf. lever presses0.40.50.70.60.6-0.8-0.8
Condit. Reinf. active minus inactive responses1.21.41.71.01.3-1.2-1.3
Condit. Reinf. active-inactive response ratio0.50.50.70.70.7-0.7-0.8
Condit. Reinf. active responses1.11.62.80.81.7-1.1-1.3
Condit. Reinf. inactive responses0.10.20.5-0.20.7-0.3-0.3
Condit. Reinf. lever presses0.30.40.6-0.7-0.20.80.7
Condit. Reinf. lever reinforcers received0.40.51.20.21.1-0.6-0.7
Conditioned reinforcement - actives0.60.61.0-0.81.0-0.6-0.7
Conditioned reinforcement - inactives0.00.00.2-0.4-0.00.1-0.0
Conditioned locomotion0.20.20.6-0.80.60.10.1
Patch foraging indifference point 0 sec0.50.82.1-1.4-0.00.80.6
Patch foraging indifference point AUC0.40.50.90.20.6-0.9-0.9
Delay disc. indifference point, 0s delay0.20.30.30.6-0.3-0.5-0.6
Delay disc. indifference point, 16s delay0.50.50.80.80.9-0.6-0.4
Delay disc. indifference point, 2s delay5.66.27.42.32.5-2.4-2.7
Delay disc. indifference point, 24s delay0.30.30.50.50.6-0.7-0.4
Delay disc. indifference point, 4s delay0.20.30.50.70.3-0.1-0.7
Delay disc. indifference point, 8s delay0.00.00.1-0.1-0.00.30.3
Indifference point function ln k0.30.41.11.1-0.40.40.3
Indifference point function log k0.30.41.11.1-0.40.40.3
Patch foraging total patch changes 0 sec0.91.53.1-1.8-0.51.31.1
Patch foraging total patch changes 12 sec0.30.41.5-1.20.30.2-0.0
Patch foraging total patch changes 18 sec0.70.93.0-1.70.30.30.6
Patch foraging total patch changes 24 sec0.20.20.8-0.20.9-0.10.0
Patch foraging total patch changes 6 sec0.30.41.5-1.20.40.1-0.1
Patch foraging time to switch 0 sec0.20.20.3-0.50.4-0.5-0.5
Patch foraging water rate 0 sec0.10.10.20.40.10.40.2
Patch foraging water rate 12 sec0.71.02.1-0.1-0.91.11.4
Patch foraging water rate 18 sec0.00.00.1-0.00.30.30.0
Patch foraging water rate 24 sec0.30.51.01.00.6-0.5-0.4
Patch foraging water rate 6 sec0.20.30.80.3-0.10.60.9
Seeking ratio, delayed vs. immediate footshock0.30.30.80.9-0.0-0.7-0.1
Distance traveled before self-admin0.10.10.2-0.30.3-0.1-0.4
Distance traveled after self-admin0.70.81.5-1.2-0.11.10.7
Extensor digitorum longus weight7.830.742.76.54.5-5.6-5.4
Bone: elastic displacement5.46.16.6-2.6-2.22.52.5
Bone: elastic work2.83.65.2-1.5-2.31.91.8
Bone: endosteal estimation0.71.54.22.10.8-0.7-0.7
Bone: endosteal perimeter1.12.25.02.21.0-1.2-1.2
Epididymis fat weight2.96.812.5-1.5-3.52.42.5
Delta time in closed arm before/after self-admin0.60.61.41.20.8-0.2-0.4
Delta time in open arm before/after self-admin4.03.94.6-2.1-2.11.62.1
Diff in mean of infusions in LGA sessions1.11.22.51.60.2-1.1-1.1
Delay discount exponential model param0.40.40.5-0.7-0.60.60.7
Extinction: sum of active levers before priming1.11.12.71.60.7-0.9-0.8
Active lever presses in extinction session 60.20.20.50.70.4-0.2-0.3
Bone: final force0.40.72.41.50.3-0.3-0.4
Bone: final moment0.50.82.91.70.3-0.3-0.4
Food consumed during 24 hour testing period0.60.71.1-0.5-0.61.01.1
Glucose0.10.20.70.0-0.80.20.4
Heart weight0.00.10.20.10.0-0.4-0.2
Delay discount hyperbolic model param0.70.80.9-1.0-0.90.80.9
Intermittent access intake day 1-15 change0.70.71.0-0.9-0.11.01.0
Intermittent access intake escalation0.60.60.8-0.90.30.90.9
Intermittent access intake escalation 20.30.30.4-0.60.20.70.6
Intermitt. access day 1 inactive lever presses0.30.30.60.60.8-0.3-0.4
Intermitt. access day 15 inactive lever presses0.50.60.8-0.2-0.80.80.9
Intermitt. access escalation Index1.71.53.40.61.8-1.1-1.0
Intermittent access day 1 total infusions0.20.20.6-0.50.8-0.2-0.2
Intermittent access day 15 total infusions0.50.61.5-1.20.50.50.5
Intermittent access terminal intake (last 3 days)0.60.72.1-0.81.4-0.1-0.1
Intermittent access total infusions0.70.72.5-0.51.6-0.3-0.3
Intermittent access day 1 locomotion0.60.61.8-1.30.50.50.5
Intermittent access day 15 total locomotion0.80.91.5-0.9-0.21.11.2
Intermittent access total locomotion0.50.61.2-1.10.70.50.5
Intermittent access standard deviation0.70.71.0-1.0-0.80.80.7
Left kidney weight0.10.30.50.50.1-0.7-0.7
Right kidney weight0.30.91.21.00.4-1.1-1.1
Cocaine induced anxiety0.10.20.2-0.10.40.50.5
Post-drug Anxiety1.01.12.51.21.6-0.5-0.4
Baseline Anxiety0.40.51.41.20.3-0.5-0.4
Tail length0.41.21.8-1.4-0.91.11.0
Length with tail0.10.51.0-0.8-1.00.50.3
Length without tail0.10.20.30.4-0.2-0.5-0.5
Times rat made contact with spout0.80.91.1-1.0-0.61.01.0
Lifetime Intake0.50.61.8-0.81.30.00.0
Liver weight, left0.10.10.30.0-0.10.50.4
Liver weight, right0.10.20.30.3-0.00.50.5
Locomotor activity0.10.10.3-0.5-0.30.30.2
Locomotor testing distance0.81.42.7-1.7-0.61.21.0
Locomotor testing rearing0.40.61.0-1.0-0.80.80.5
Locomotion in novel chamber2.32.94.02.01.0-1.9-1.7
Locomotion in novel chamber post-restriction0.91.11.91.01.4-0.9-0.7
Fecal boli incidents, locomotor time 13.94.25.2-2.3-1.62.22.1
Change in fecal boli incidents, locomotor task1.51.52.41.50.9-1.3-0.9
Time >=10cm from walls, locomotor time 10.50.50.8-0.7-0.20.80.9
Bouts of movement, locomotor time 10.30.31.0-1.0-0.30.30.3
Total resting periods, locomotor time 10.90.91.8-1.4-0.80.80.8
Rest time, locomotor task time 10.80.91.9-1.4-0.30.90.8
Distance moved, locomotor task time 11.41.52.11.51.2-1.3-1.0
Vertical activity count, locomotor time 12.62.83.51.51.5-1.9-1.8
Time >=10cm from walls, locomotor time 20.50.51.2-1.10.10.80.5
Bouts of movement, locomotor time 21.92.02.91.21.7-1.4-1.3
Total resting periods, locomotor time 22.72.93.71.51.9-1.7-1.6
Rest time, locomotor task time 20.10.10.2-0.40.10.00.3
Distance moved, locomotor task time 20.10.10.10.3-0.3-0.0-0.2
Vertical activity count, locomotor time 20.20.20.60.10.1-0.4-0.7
Light reinforcement 10.20.30.9-0.90.5-0.3-0.1
Light reinforcement 20.10.20.6-0.8-0.2-0.20.2
Bone: marrow area0.71.44.12.00.8-0.7-0.6
Bone: maximum diameter0.50.91.21.10.9-0.8-0.8
Bone: maximum force1.01.64.32.10.8-0.9-0.9
Bone: maximum moment1.01.85.12.30.7-0.8-0.9
Mean time between licks in bursts1.41.93.0-1.7-0.91.41.3
Mean num. licks in bursts0.81.01.80.1-1.31.01.1
Cd content in liver0.50.51.2-1.10.10.70.5
Co content in liver0.10.10.50.20.70.10.1
Cu content in liver1.11.34.90.52.2-0.1-0.2
Fe content in liver0.10.20.6-0.80.10.00.1
K content in liver0.40.30.8-0.9-0.20.60.5
Mg content in liver0.70.71.7-1.30.00.80.8
Mn content in liver0.00.00.1-0.1-0.4-0.0-0.2
Na content in liver0.10.10.3-0.40.60.10.0
Rb content in liver0.50.71.0-0.71.00.80.7
Se content in liver0.60.82.1-1.4-0.70.50.5
Sr content in liver1.31.21.7-0.4-1.21.11.3
Zn content in liver2.22.44.0-2.0-0.71.51.7
Bone: minimum diameter1.22.25.32.30.8-1.2-1.1
Time in familiar zone, hab. session 10.60.61.3-0.4-1.20.70.7
Time in novel zone, hab. session 12.32.33.41.21.8-1.5-1.4
Total zone transitions, hab. session 10.30.40.60.10.6-0.7-0.8
Total locomotion distance, hab. session 10.50.71.3-1.1-0.80.60.6
Locomotion velocity, hab. session 10.60.81.3-1.1-1.00.70.7
Time in familiar zone, hab. session 20.20.20.20.5-0.30.30.5
Time in novel zone, hab. session 20.50.50.80.30.9-0.8-0.9
Total zone transitions, hab. session 20.30.40.8-0.9-0.60.50.6
Total locomotion distance, hab. session 20.50.61.4-0.7-1.20.60.6
Locomotion velocity, hab. session 20.81.02.2-0.9-1.50.80.8
Novel to familiar place preference ratio1.01.01.31.10.7-1.0-1.1
Novelty place preference0.60.60.80.90.6-0.8-0.9
Time in novel zone, NPP test0.90.91.11.10.7-1.0-1.0
Total zone transitions, NPP test1.11.63.7-1.9-1.11.00.8
Total locomotion distance, NPP test2.43.34.9-2.2-2.11.41.4
Locomotion velocity, NPP test2.84.05.4-2.3-2.31.61.5
Intraocular pressure0.81.11.7-1.3-0.01.11.2
Delta distance traveled before/after self-admin2.42.63.5-1.4-1.21.91.8
Delta ambulatory time before/after self-admin2.12.33.3-1.2-1.21.81.8
Parametrial fat weight4.07.710.9-3.3-2.32.92.5
Pavlov. Cond. lever latency1.41.83.2-1.1-1.81.21.2
Pavlov. Cond. magazine entry latency3.24.15.51.92.4-1.9-1.9
Pavlov. Cond. change in total contacts3.33.64.91.92.2-1.7-1.6
Pavlov. Cond. index score4.05.16.92.12.6-2.1-2.1
Pavlov. Cond. latency score3.84.87.02.12.6-2.0-2.0
Pavlov. Cond. lever contacts1.31.52.51.11.6-1.1-1.0
Pavlov. Cond. magazine entry number1.51.92.6-1.4-1.61.21.1
Pavlov. Cond. intertrial magazine entries2.02.53.4-1.8-1.41.51.4
Pavlov. Cond. lever-magazine prob. diff.3.94.86.72.02.6-2.1-2.0
Pavlov. Cond. response bias1.41.62.31.31.5-1.3-1.0
Pavlov. Cond. lever latency1.21.62.21.50.7-1.3-1.4
Pavlov. Cond. magazine entry latency2.32.63.7-1.3-1.91.61.6
Pavlov. Cond. change in total contacts0.71.01.80.71.3-0.9-0.9
Pavlov. Cond. index score1.62.12.3-1.5-1.31.51.5
Pavlov. Cond. latency score1.51.82.1-1.5-1.21.41.4
Pavlov. Cond. lever contacts2.23.03.4-1.8-1.31.81.8
Pavlov. Cond. magazine entry number0.60.70.90.60.9-0.9-0.9
Pavlov. Cond. intertrial magazine entries0.81.11.4-0.9-0.91.11.2
Pavlov. Cond. lever-magazine prob. diff.1.01.31.5-1.1-1.11.21.2
Pavlov. Cond. response bias1.92.53.1-1.5-1.31.71.8
Time in closed arm before self-admin0.30.30.8-0.2-0.0-0.6-0.9
Time in closed arm after self-admin2.62.63.41.41.8-1.5-1.8
Time in open arm before self-admin2.42.64.01.32.0-1.4-1.6
Time in open arm after self-admin0.50.51.2-0.7-1.10.30.6
Bone: periosteal estimation0.91.95.02.20.9-1.0-0.9
Bone: periosteal perimeter2.33.87.42.71.3-1.8-1.8
Bone: post-yield work0.81.02.41.50.9-0.7-0.6
Progressive ratio test 1 active lever presses1.41.54.8-2.20.50.70.6
Progressive ratio test 1 breakpoint1.21.23.9-2.00.60.60.5
Progressive ratio test 1 inactive lever presses0.20.30.5-0.70.7-0.1-0.3
Progressive ratio test 2 active lever presses0.40.41.3-0.51.10.10.1
Progressive ratio test 2 breakpoint0.30.31.3-0.31.10.00.0
Progressive ratio test 2 inactive lever presses0.20.20.2-0.50.50.40.4
Incentive Sensitization - Responses0.30.30.80.90.5-0.3-0.3
Incentive Sensitization - Breakpoint0.60.61.21.10.7-0.5-0.5
Sum of active levers in priming session hrs 5-60.60.61.40.41.2-0.7-0.4
Progressive ratio0.00.00.10.20.0-0.3-0.0
Food seeking constrained by brief footshock0.60.72.0-1.01.40.0-0.2
Seeking ratio, punishment vs. effort0.10.20.3-0.60.50.3-0.0
Retroperitoneal fat weight1.85.86.6-2.5-2.62.32.3
Reaction time number correct1.31.92.5-1.3-1.01.61.6
Reaction time mean minus median0.10.20.40.1-0.2-0.5-0.6
Reaction time mean minus median AUC0.30.40.70.30.3-0.7-0.8
Reaction time num false alarms0.30.50.8-0.9-0.70.50.6
Reaction time num false alarms AUC0.20.20.7-0.9-0.30.20.2
Reaction time trials correct on left1.31.92.5-1.3-1.01.61.6
Reaction time trials on left1.42.02.5-1.3-1.11.61.6
Reaction time mean0.40.50.80.90.0-0.8-0.8
Reaction time mean AUC0.40.61.01.00.0-0.8-0.9
Median of all reaction times0.40.51.11.00.1-0.7-0.7
Reaction time omissions0.70.92.5-0.8-1.60.60.5
Reaction time false alarm rate0.30.40.70.10.6-0.8-0.8
Reaction time premature initiation rate1.01.41.8-1.4-0.71.41.2
Reaction time premature initiations2.33.24.1-1.9-1.32.01.9
Std. dev. reaction times0.30.40.80.4-0.2-0.8-0.9
Reaction time trials completed1.42.02.5-1.3-1.11.61.6
Reaction time trials AUC1.11.62.1-1.1-1.01.41.4
Run reversals in cocaine runway, females0.10.10.20.4-0.1-0.1-0.3
Run reversals in cocaine runway, males1.51.53.30.80.1-1.4-1.8
Latency to leave start box in cocaine runway0.50.50.90.70.9-0.7-0.5
Latency to leave start box in cocaine runway, F0.30.40.60.30.7-0.8-0.6
Latency to leave start box in cocaine runway, M0.70.71.21.11.1-0.6-0.1
Std. dev. time between licks in bursts2.12.53.5-1.9-1.41.61.5
Total sessions with >9 infusions0.91.03.20.01.8-0.7-0.5
Short access day 1 total inactive lever presses0.20.20.3-0.50.40.50.2
Short access day 10 total inactive lever presses0.10.10.20.4-0.00.50.3
Short access day 1 total infusions0.10.10.2-0.5-0.00.1-0.1
Short access day 10 total infusions0.30.40.8-0.80.90.10.2
Short access total infusions0.20.30.5-0.70.70.20.2
Short access day 1 locomotion0.10.10.2-0.5-0.4-0.0-0.1
Short access day 10 total locomotion0.00.00.1-0.1-0.0-0.2-0.1
Short access total locomotion0.10.10.4-0.60.2-0.2-0.2
One hour access (0.3 mA shock)3.03.56.31.62.5-1.7-1.5
Compulsive drug intake2.32.33.51.71.9-1.3-1.1
One hour access (shock baseline)1.41.62.41.01.5-1.2-1.2
Social response proportion1.21.31.6-1.3-1.11.11.1
Social responses0.50.61.5-1.2-0.90.30.2
Social time1.01.33.2-0.7-1.80.80.8
Soleus weight0.10.41.41.2-0.2-0.2-0.0
Bone: stiffness2.64.27.72.81.7-1.7-1.7
Tibialis anterior weight10.335.241.36.45.1-6.1-6.1
Time to tail flick, vehicle, before self-admin0.70.71.20.70.3-0.9-1.1
Time to tail flick, vehicle, after self-admin0.10.20.40.6-0.3-0.3-0.1
Time to tail flick, test, before self-admin0.40.41.10.2-0.3-0.6-1.0
Time to tail flick, test, after self-admin1.01.03.21.8-0.0-0.8-0.5
Delta time to tail flick, vehicle, before/after SA0.40.41.0-0.2-0.40.71.0
Delta time to tail flick, test, before/after SA0.60.51.91.40.2-0.40.1
Tibia length0.10.20.60.8-0.1-0.1-0.2
Ambulatory time before self-admin0.20.20.7-0.30.8-0.0-0.1
Ambulatory time after self-admin0.91.01.7-1.00.11.31.1
Bone: tissue strength1.91.82.71.71.4-1.1-1.1
Total heroin consumption0.20.20.70.90.30.30.2
Bone: trabecular number0.20.20.50.0-0.70.60.5
Bone: trabecular spacing0.60.82.20.31.5-0.6-0.7
Bone: trabecular thickness0.10.10.20.2-0.5-0.2-0.2
Bone: trabecular tissue density1.62.33.10.91.5-1.8-1.7
Water consumed over 24 hours0.60.81.3-0.6-0.71.01.1
Number of responses in last shaping day1.51.53.5-1.2-1.90.80.6