Krt6a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye intron excision ratio chr7_132832634_132851232 0.45 0.19 2.1e-04 0.02 0.15 0.05 0.07 1.8e-01 2.5e-03 5.5e-02 3.0e-02
2 Eye intron excision ratio chr7_132850706_132851232 0.43 0.18 1.9e-04 0.05 0.15 0.07 0.09 5.6e-02 2.7e-03 2.9e-02 1.9e-02
3 Eye gene expression Krt6a 0.55 0.17 1.7e-05 0.16 0.14 0.04 0.14 1.7e-03 3.9e-03 8.1e-02 4.3e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.30.6-0.5-0.3
Area under the delay curve0.30.30.50.5-0.5-0.7
BMI with tail2.89.19.93.0-2.9-3.1
BMI without tail0.40.81.10.8-0.7-1.0
Body weight0.72.93.71.6-1.5-1.9
Weight adjusted by age0.30.30.70.4-0.4-0.8
Bone surface0.50.81.21.1-1.0-0.5
Bone volume0.61.01.31.1-1.1-0.7
Breakpoint value in progressive ratio session0.20.20.30.5-0.60.1
Number of licking bursts0.00.00.00.2-0.2-0.1
Context. condit. distance diff. score0.00.00.00.1-0.10.1
Locomotion velocity, session 15.35.86.2-2.52.42.3
Locomotion distance, session 10.91.21.4-1.21.20.9
Locomotion velocity, session 23.33.84.2-2.02.01.8
Locomotion distance, session 21.21.62.0-1.41.41.0
Locomotion velocity, session 35.86.86.9-2.62.62.6
Locomotion distance, session 35.35.85.9-2.42.42.4
Stereotopy head waving bouts, day 31.82.12.21.5-1.5-1.4
Stereotopy head waving duration, day 30.00.00.10.2-0.2-0.2
Locomotion velocity, session 71.21.31.5-1.21.11.2
Locomotion distance, session 73.94.95.0-2.22.22.2
Stereotopy head waving bouts, day 73.54.04.02.0-2.0-2.0
Stereotopy head waving duration, day 73.13.74.02.0-2.0-1.8
Locomotion velocity, session 80.10.20.2-0.40.30.5
Locomotion distance, session 81.62.32.5-1.61.51.5
Degree of sensitization distance0.50.50.60.7-0.7-0.8
Degree of sensitization stereotypy3.03.33.51.9-1.9-1.7
Conditioned locomotion0.20.30.4-0.60.60.4
Cocaine response after cond. corrected0.10.10.20.1-0.1-0.5
Cocaine response after cond. not corrected0.00.00.0-0.10.1-0.1
Cocaine response before conditioning1.21.41.9-1.11.11.4
Saline control response0.00.00.0-0.10.10.1
Bone: connectivity density0.10.10.2-0.20.30.4
Bone: cortical apparent density1.21.62.31.1-1.1-1.5
Bone: cortical area0.81.21.41.2-1.1-0.9
Bone: cortical porosity1.61.71.9-1.21.31.4
Bone: cortical porosity1.51.61.7-1.21.21.3
Bone: cortical thickness0.20.30.30.5-0.5-0.6
Bone: cortical thickness0.60.70.9-0.91.00.5
Bone: cortical tissue density0.91.21.90.9-1.0-1.4
Condit. Reinf. active minus inactive responses0.20.30.3-0.50.50.5
Condit. Reinf. active-inactive response ratio0.40.40.4-0.60.70.7
Condit. Reinf. active responses0.70.80.9-0.91.00.8
Condit. Reinf. inactive responses0.70.91.0-1.01.00.7
Incentive salience index mean0.00.00.0-0.10.10.1
Condit. Reinf. lever presses0.60.81.00.9-0.9-1.0
Condit. Reinf. active minus inactive responses1.31.71.71.3-1.3-1.3
Condit. Reinf. active-inactive response ratio0.60.70.70.8-0.8-0.8
Condit. Reinf. active responses1.21.71.81.3-1.3-1.2
Condit. Reinf. inactive responses0.10.10.10.3-0.3-0.3
Condit. Reinf. lever presses0.30.40.4-0.60.60.7
Condit. Reinf. lever reinforcers received0.40.50.60.7-0.7-0.7
Conditioned reinforcement - actives0.20.20.30.4-0.5-0.1
Conditioned reinforcement - inactives0.00.00.0-0.10.1-0.1
Conditioned locomotion0.10.10.4-0.20.10.6
Patch foraging indifference point 0 sec0.30.60.6-0.80.70.8
Patch foraging indifference point AUC0.40.50.80.5-0.6-0.9
Delay disc. indifference point, 0s delay0.10.20.40.2-0.2-0.6
Delay disc. indifference point, 16s delay0.30.30.60.5-0.4-0.8
Delay disc. indifference point, 2s delay6.67.37.52.7-2.7-2.7
Delay disc. indifference point, 24s delay0.20.20.20.4-0.4-0.4
Delay disc. indifference point, 4s delay0.30.30.50.5-0.5-0.7
Delay disc. indifference point, 8s delay0.10.10.1-0.20.30.3
Indifference point function ln k0.00.00.10.2-0.10.2
Indifference point function log k0.00.00.10.2-0.10.2
Patch foraging total patch changes 0 sec0.91.41.5-1.21.11.2
Patch foraging total patch changes 12 sec0.10.10.2-0.40.30.2
Patch foraging total patch changes 18 sec0.40.50.6-0.80.70.7
Patch foraging total patch changes 24 sec0.00.00.1-0.0-0.00.3
Patch foraging total patch changes 6 sec0.10.10.2-0.40.30.1
Patch foraging time to switch 0 sec0.10.20.40.4-0.4-0.6
Patch foraging water rate 0 sec0.00.00.10.00.00.3
Patch foraging water rate 12 sec0.71.12.0-0.80.81.4
Patch foraging water rate 18 sec0.00.00.10.1-0.10.4
Patch foraging water rate 24 sec0.20.30.40.7-0.6-0.3
Patch foraging water rate 6 sec0.20.30.9-0.20.21.0
Seeking ratio, delayed vs. immediate footshock0.00.10.10.1-0.1-0.4
Distance traveled before self-admin0.00.00.00.0-0.0-0.0
Distance traveled after self-admin0.80.81.6-0.70.71.3
Extensor digitorum longus weight8.131.833.35.8-5.7-5.5
Bone: elastic displacement5.86.66.8-2.62.62.5
Bone: elastic work3.03.94.1-2.02.01.9
Bone: endosteal estimation0.51.11.51.2-1.1-0.6
Bone: endosteal perimeter1.12.22.81.7-1.6-1.2
Epididymis fat weight3.06.97.5-2.62.72.5
Delta time in closed arm before/after self-admin0.10.10.20.3-0.30.4
Delta time in open arm before/after self-admin5.04.85.1-2.32.32.0
Diff in mean of infusions in LGA sessions1.01.11.21.1-1.0-1.1
Delay discount exponential model param0.40.40.6-0.60.60.8
Extinction: sum of active levers before priming1.01.01.31.1-1.1-0.8
Active lever presses in extinction session 60.10.10.20.2-0.2-0.4
Bone: final force0.20.40.60.8-0.7-0.4
Bone: final moment0.20.40.60.8-0.7-0.3
Food consumed during 24 hour testing period0.60.81.2-0.70.81.1
Glucose0.10.20.2-0.40.40.3
Heart weight0.10.10.20.1-0.1-0.4
Delay discount hyperbolic model param0.80.91.1-0.90.91.1
Intermittent access intake day 1-15 change0.50.50.5-0.70.70.7
Intermittent access intake escalation0.40.40.4-0.60.60.7
Intermittent access intake escalation 20.40.40.7-0.50.50.8
Intermitt. access day 1 inactive lever presses0.10.10.10.3-0.3-0.1
Intermitt. access day 15 inactive lever presses0.70.81.2-0.80.81.1
Intermitt. access escalation Index1.31.21.21.0-1.1-1.1
Intermittent access day 1 total infusions0.00.00.00.1-0.2-0.2
Intermittent access day 15 total infusions0.10.10.2-0.50.40.2
Intermittent access terminal intake (last 3 days)0.00.00.10.2-0.3-0.2
Intermittent access total infusions0.10.10.20.3-0.4-0.4
Intermittent access day 1 locomotion0.20.20.3-0.50.40.5
Intermittent access day 15 total locomotion0.91.01.0-1.01.00.9
Intermittent access total locomotion0.20.30.5-0.50.40.7
Intermittent access standard deviation0.70.81.1-1.11.10.3
Left kidney weight0.20.50.60.7-0.6-0.8
Right kidney weight0.61.62.21.2-1.1-1.5
Cocaine induced anxiety0.10.10.3-0.10.10.5
Post-drug Anxiety0.60.70.80.9-0.9-0.7
Baseline Anxiety0.20.20.30.4-0.4-0.5
Tail length0.41.21.3-1.21.10.9
Length with tail0.10.20.3-0.50.60.3
Length without tail0.10.30.30.5-0.5-0.6
Times rat made contact with spout0.60.71.1-0.70.81.0
Lifetime Intake0.00.00.0-0.0-0.10.0
Liver weight, left0.10.20.4-0.30.30.7
Liver weight, right0.10.20.3-0.30.30.5
Locomotor activity0.10.10.1-0.30.30.3
Locomotor testing distance0.81.31.3-1.11.11.1
Locomotor testing rearing0.50.80.8-0.90.90.8
Locomotion in novel chamber1.92.33.01.7-1.7-1.1
Locomotion in novel chamber post-restriction0.30.30.50.6-0.7-0.2
Fecal boli incidents, locomotor time 13.84.24.6-2.22.11.8
Change in fecal boli incidents, locomotor task1.21.11.31.1-1.1-0.9
Time >=10cm from walls, locomotor time 10.70.71.3-0.70.71.1
Bouts of movement, locomotor time 10.20.20.3-0.50.50.0
Total resting periods, locomotor time 10.70.71.1-1.01.00.3
Rest time, locomotor task time 10.50.50.8-0.90.90.3
Distance moved, locomotor task time 10.80.81.21.1-1.1-0.3
Vertical activity count, locomotor time 12.22.33.01.7-1.7-0.9
Time >=10cm from walls, locomotor time 20.20.20.3-0.50.50.4
Bouts of movement, locomotor time 22.02.22.21.5-1.5-1.5
Total resting periods, locomotor time 22.93.13.41.7-1.7-1.8
Rest time, locomotor task time 20.10.10.1-0.30.2-0.3
Distance moved, locomotor task time 20.00.00.00.1-0.1-0.1
Vertical activity count, locomotor time 20.10.10.20.4-0.4-0.1
Light reinforcement 10.00.00.0-0.10.0-0.0
Light reinforcement 20.00.10.1-0.30.30.0
Bone: marrow area0.51.11.51.2-1.1-0.6
Bone: maximum diameter0.61.11.41.2-1.1-0.8
Bone: maximum force0.81.31.71.3-1.2-0.8
Bone: maximum moment0.71.21.71.3-1.2-0.8
Mean time between licks in bursts1.31.82.1-1.51.41.2
Mean num. licks in bursts0.81.01.1-0.91.01.0
Cd content in liver0.30.30.4-0.50.50.6
Co content in liver0.00.00.10.1-0.10.2
Cu content in liver0.70.81.21.1-1.1-0.2
Fe content in liver0.10.10.2-0.40.40.4
K content in liver0.20.20.3-0.40.40.6
Mg content in liver0.40.40.6-0.60.50.8
Mn content in liver0.00.00.0-0.00.0-0.1
Na content in liver0.00.00.00.0-0.10.0
Rb content in liver0.20.20.6-0.20.20.8
Se content in liver0.40.50.7-0.80.80.5
Sr content in liver1.51.41.5-1.21.21.2
Zn content in liver1.61.81.9-1.41.31.4
Bone: minimum diameter1.01.92.41.6-1.5-1.1
Time in familiar zone, hab. session 10.60.50.6-0.80.80.6
Time in novel zone, hab. session 12.42.32.51.6-1.6-1.4
Total zone transitions, hab. session 10.30.50.70.6-0.6-0.8
Total locomotion distance, hab. session 10.30.40.6-0.80.70.4
Locomotion velocity, hab. session 10.40.60.8-0.90.90.5
Time in familiar zone, hab. session 20.10.10.3-0.10.20.5
Time in novel zone, hab. session 20.60.60.80.6-0.7-0.9
Total zone transitions, hab. session 20.30.30.4-0.70.60.5
Total locomotion distance, hab. session 20.40.50.7-0.80.80.4
Locomotion velocity, hab. session 20.70.91.1-1.11.10.6
Novel to familiar place preference ratio1.11.21.31.1-1.0-1.2
Novelty place preference0.80.80.90.9-0.8-0.9
Time in novel zone, NPP test1.01.01.11.0-1.0-1.0
Total zone transitions, NPP test0.71.11.4-1.21.10.8
Total locomotion distance, NPP test2.02.83.5-1.91.81.2
Locomotion velocity, NPP test2.33.34.1-2.02.01.4
Intraocular pressure0.81.11.7-0.90.81.3
Delta distance traveled before/after self-admin2.72.94.1-1.51.52.0
Delta ambulatory time before/after self-admin2.42.74.0-1.41.42.0
Parametrial fat weight3.56.87.2-2.72.72.5
Pavlov. Cond. lever latency1.62.12.3-1.51.51.3
Pavlov. Cond. magazine entry latency3.54.54.92.2-2.2-2.0
Pavlov. Cond. change in total contacts3.84.14.52.1-2.1-1.8
Pavlov. Cond. index score4.55.76.22.5-2.5-2.2
Pavlov. Cond. latency score4.15.35.82.4-2.4-2.1
Pavlov. Cond. lever contacts1.61.92.11.4-1.5-1.2
Pavlov. Cond. magazine entry number1.72.12.5-1.61.61.2
Pavlov. Cond. intertrial magazine entries2.22.73.0-1.71.71.5
Pavlov. Cond. lever-magazine prob. diff.4.45.56.02.4-2.4-2.1
Pavlov. Cond. response bias1.72.02.31.5-1.5-1.2
Pavlov. Cond. lever latency1.11.51.51.2-1.2-1.2
Pavlov. Cond. magazine entry latency2.63.03.3-1.81.81.5
Pavlov. Cond. change in total contacts1.01.41.41.2-1.2-1.2
Pavlov. Cond. index score1.62.12.3-1.51.51.3
Pavlov. Cond. latency score1.41.71.9-1.41.41.2
Pavlov. Cond. lever contacts2.02.82.8-1.71.71.7
Pavlov. Cond. magazine entry number0.60.80.90.9-0.9-0.7
Pavlov. Cond. intertrial magazine entries1.01.31.5-1.11.11.2
Pavlov. Cond. lever-magazine prob. diff.1.01.21.4-1.21.21.0
Pavlov. Cond. response bias2.02.72.7-1.61.61.6
Time in closed arm before self-admin0.70.81.50.7-0.7-1.2
Time in closed arm after self-admin2.22.32.71.6-1.6-1.2
Time in open arm before self-admin2.42.63.11.7-1.8-1.3
Time in open arm after self-admin0.40.40.5-0.70.70.5
Bone: periosteal estimation0.81.72.31.5-1.4-0.9
Bone: periosteal perimeter2.33.94.42.1-2.0-1.7
Bone: post-yield work0.60.81.11.0-1.0-0.6
Progressive ratio test 1 active lever presses0.50.50.7-0.80.70.6
Progressive ratio test 1 breakpoint0.30.30.4-0.70.50.5
Progressive ratio test 1 inactive lever presses0.00.00.00.0-0.10.1
Progressive ratio test 2 active lever presses0.00.00.00.1-0.10.0
Progressive ratio test 2 breakpoint0.00.00.00.2-0.2-0.1
Progressive ratio test 2 inactive lever presses0.00.10.1-0.20.20.2
Incentive Sensitization - Responses0.40.50.50.7-0.7-0.6
Incentive Sensitization - Breakpoint0.80.80.90.9-0.9-0.8
Sum of active levers in priming session hrs 5-60.20.20.30.5-0.5-0.5
Progressive ratio0.00.00.0-0.10.10.1
Food seeking constrained by brief footshock0.00.00.00.1-0.2-0.2
Seeking ratio, punishment vs. effort0.00.00.00.0-0.1-0.1
Retroperitoneal fat weight1.75.66.3-2.52.52.1
Reaction time number correct0.91.21.9-0.91.01.4
Reaction time mean minus median0.10.10.20.0-0.0-0.4
Reaction time mean minus median AUC0.20.20.50.3-0.3-0.7
Reaction time num false alarms0.30.40.5-0.70.60.7
Reaction time num false alarms AUC0.10.10.2-0.40.40.3
Reaction time trials correct on left0.91.21.9-0.91.01.4
Reaction time trials on left0.91.32.0-1.01.01.4
Reaction time mean0.20.30.50.4-0.4-0.7
Reaction time mean AUC0.20.30.50.5-0.4-0.7
Median of all reaction times0.20.20.40.4-0.4-0.6
Reaction time omissions0.91.21.3-1.21.21.0
Reaction time false alarm rate0.20.30.40.4-0.5-0.6
Reaction time premature initiation rate0.91.21.4-1.21.11.0
Reaction time premature initiations1.82.52.7-1.51.61.6
Std. dev. reaction times0.20.20.50.3-0.3-0.7
Reaction time trials completed0.91.32.0-1.01.01.4
Reaction time trials AUC0.71.01.6-0.80.81.3
Run reversals in cocaine runway, females0.10.10.20.1-0.1-0.4
Run reversals in cocaine runway, males1.61.52.51.1-1.0-1.6
Latency to leave start box in cocaine runway0.40.40.40.6-0.6-0.6
Latency to leave start box in cocaine runway, F0.30.30.50.4-0.5-0.7
Latency to leave start box in cocaine runway, M0.50.50.70.8-0.8-0.3
Std. dev. time between licks in bursts1.82.22.3-1.51.51.4
Total sessions with >9 infusions0.30.40.50.7-0.7-0.4
Short access day 1 total inactive lever presses0.00.00.1-0.20.10.3
Short access day 10 total inactive lever presses0.10.10.2-0.00.10.5
Short access day 1 total infusions0.00.00.00.0-0.0-0.2
Short access day 10 total infusions0.00.00.0-0.20.10.1
Short access total infusions0.10.10.1-0.30.20.3
Short access day 1 locomotion0.00.00.0-0.20.20.1
Short access day 10 total locomotion0.00.00.1-0.10.1-0.3
Short access total locomotion0.00.00.1-0.10.1-0.3
One hour access (0.3 mA shock)2.02.42.91.7-1.7-1.2
Compulsive drug intake1.81.82.31.5-1.5-0.8
One hour access (shock baseline)1.01.21.31.0-1.1-1.1
Social response proportion1.41.51.6-1.31.31.1
Social responses0.40.50.6-0.80.80.3
Social time0.91.21.4-1.11.21.0
Soleus weight0.00.00.10.3-0.2-0.1
Bone: stiffness2.64.04.82.2-2.1-1.7
Tibialis anterior weight10.937.437.86.1-6.1-6.2
Time to tail flick, vehicle, before self-admin0.40.40.80.5-0.5-0.9
Time to tail flick, vehicle, after self-admin0.10.10.20.4-0.30.0
Time to tail flick, test, before self-admin0.60.51.30.4-0.4-1.1
Time to tail flick, test, after self-admin0.30.30.40.6-0.6-0.4
Delta time to tail flick, vehicle, before/after SA0.30.30.7-0.30.30.9
Delta time to tail flick, test, before/after SA0.10.10.20.4-0.40.2
Tibia length0.00.10.20.4-0.3-0.0
Ambulatory time before self-admin0.00.00.0-0.20.10.2
Ambulatory time after self-admin1.41.52.9-0.90.91.7
Bone: tissue strength1.31.31.51.2-1.2-1.0
Total heroin consumption0.00.00.00.2-0.10.0
Bone: trabecular number0.10.20.3-0.40.50.5
Bone: trabecular spacing0.50.60.80.8-0.9-0.6
Bone: trabecular thickness0.00.00.10.1-0.1-0.2
Bone: trabecular tissue density2.02.92.91.7-1.7-1.7
Water consumed over 24 hours0.81.01.4-0.90.91.2
Number of responses in last shaping day0.50.50.7-0.80.80.4