Krt16

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 OFC gene expression Krt16 0.28 0.17 1.0e-03 0.17 0.08 0.15 0.14 7.3e-05 5.9e-03 2.1e-04 3.7e-04
2 PL gene expression Krt16 0.23 0.07 0.0e+00 0.23 0.23 0.22 0.23 1.1e-24 1.1e-24 4.4e-24 5.2e-25
3 BLA gene expression Krt16 0.46 0.14 1.1e-11 0.12 0.14 0.11 0.14 9.4e-07 7.3e-08 1.4e-06 9.9e-08
4 IC gene expression Krt16 0.28 0.1 5.6e-13 0.28 0.28 0.27 0.29 2.9e-12 3.1e-12 6.0e-12 1.8e-12

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.40.3-0.1-0.6-0.3
Area under the delay curve0.30.40.6-0.80.70.50.6
BMI with tail0.10.20.70.40.10.80.3
BMI without tail0.52.74.1-1.11.52.01.7
Body weight1.77.610.7-2.72.43.32.5
Weight adjusted by age1.33.86.0-1.92.41.12.1
Bone surface0.51.11.8-1.31.10.80.8
Bone volume0.20.50.9-0.90.70.50.4
Breakpoint value in progressive ratio session0.20.30.60.8-0.3-0.6-0.2
Number of licking bursts0.82.53.11.7-1.6-1.2-1.8
Context. condit. distance diff. score1.72.02.4-1.31.41.41.5
Locomotion velocity, session 10.10.10.2-0.00.50.10.4
Locomotion distance, session 11.21.52.1-1.11.31.51.2
Locomotion velocity, session 20.00.00.1-0.2-0.0-0.10.0
Locomotion distance, session 20.00.10.1-0.30.20.10.2
Locomotion velocity, session 30.30.30.5-0.50.60.50.7
Locomotion distance, session 31.61.82.2-1.41.51.21.4
Stereotopy head waving bouts, day 31.92.22.61.4-1.5-1.6-1.5
Stereotopy head waving duration, day 30.20.30.30.4-0.5-0.5-0.6
Locomotion velocity, session 70.30.41.1-0.40.41.00.4
Locomotion distance, session 74.25.45.6-2.42.32.42.2
Stereotopy head waving bouts, day 72.63.03.31.8-1.8-1.7-1.7
Stereotopy head waving duration, day 73.64.54.72.2-2.2-2.1-2.0
Locomotion velocity, session 81.21.42.0-1.41.11.01.2
Locomotion distance, session 80.71.11.3-1.11.01.01.1
Degree of sensitization distance1.11.21.6-1.30.91.20.9
Degree of sensitization stereotypy2.22.42.61.6-1.6-1.6-1.5
Conditioned locomotion0.91.02.01.4-0.9-0.8-0.8
Cocaine response after cond. corrected0.40.60.90.8-0.6-0.9-0.7
Cocaine response after cond. not corrected0.10.20.30.3-0.4-0.6-0.5
Cocaine response before conditioning0.50.61.3-1.10.60.70.4
Saline control response1.01.42.6-1.61.20.61.1
Bone: connectivity density0.20.30.70.4-0.3-0.8-0.4
Bone: cortical apparent density2.23.54.81.9-1.5-2.2-1.8
Bone: cortical area0.30.40.9-0.90.70.40.4
Bone: cortical porosity0.50.50.8-0.60.90.60.8
Bone: cortical porosity0.60.70.9-0.70.90.70.9
Bone: cortical thickness0.20.40.60.5-0.5-0.7-0.7
Bone: cortical thickness0.30.41.10.3-0.3-1.0-0.5
Bone: cortical tissue density2.23.54.81.9-1.6-2.2-1.8
Condit. Reinf. active minus inactive responses0.20.20.80.2-0.2-0.9-0.1
Condit. Reinf. active-inactive response ratio0.40.40.80.6-0.5-0.9-0.4
Condit. Reinf. active responses0.10.20.6-0.0-0.1-0.8-0.1
Condit. Reinf. inactive responses0.10.20.3-0.60.50.10.3
Incentive salience index mean0.30.40.80.5-0.5-0.9-0.4
Condit. Reinf. lever presses0.10.10.10.4-0.2-0.3-0.2
Condit. Reinf. active minus inactive responses0.10.10.20.0-0.4-0.4-0.3
Condit. Reinf. active-inactive response ratio0.00.10.1-0.30.20.20.3
Condit. Reinf. active responses0.20.20.40.2-0.5-0.6-0.5
Condit. Reinf. inactive responses0.30.50.90.5-0.5-0.9-0.7
Condit. Reinf. lever presses0.10.20.3-0.50.40.30.5
Condit. Reinf. lever reinforcers received0.20.30.50.3-0.5-0.7-0.5
Conditioned reinforcement - actives0.41.42.2-0.81.51.01.4
Conditioned reinforcement - inactives0.00.00.00.10.1-0.0-0.1
Conditioned locomotion1.21.82.9-0.81.71.11.6
Patch foraging indifference point 0 sec0.00.10.2-0.50.30.20.2
Patch foraging indifference point AUC0.20.40.70.9-0.7-0.4-0.5
Delay disc. indifference point, 0s delay0.10.20.3-0.60.40.20.3
Delay disc. indifference point, 16s delay0.00.00.10.1-0.0-0.30.1
Delay disc. indifference point, 2s delay0.20.20.7-0.80.20.10.1
Delay disc. indifference point, 24s delay0.81.31.7-1.11.30.91.2
Delay disc. indifference point, 4s delay0.10.10.2-0.50.3-0.10.3
Delay disc. indifference point, 8s delay0.91.61.7-1.31.31.31.2
Indifference point function ln k0.10.20.4-0.70.40.30.2
Indifference point function log k0.10.20.4-0.70.40.30.2
Patch foraging total patch changes 0 sec0.10.30.5-0.70.50.50.4
Patch foraging total patch changes 12 sec0.40.50.70.6-0.8-0.8-0.7
Patch foraging total patch changes 18 sec0.00.10.3-0.10.00.50.2
Patch foraging total patch changes 24 sec0.00.00.10.10.10.20.2
Patch foraging total patch changes 6 sec0.20.40.5-0.70.60.50.7
Patch foraging time to switch 0 sec0.10.20.4-0.40.60.30.6
Patch foraging water rate 0 sec0.00.00.0-0.2-0.10.1-0.1
Patch foraging water rate 12 sec0.00.00.10.2-0.0-0.1-0.3
Patch foraging water rate 18 sec0.40.91.60.5-1.0-0.8-1.3
Patch foraging water rate 24 sec0.00.00.10.20.10.3-0.0
Patch foraging water rate 6 sec1.01.51.71.0-1.3-1.3-1.3
Seeking ratio, delayed vs. immediate footshock0.10.10.20.40.3-0.20.4
Distance traveled before self-admin0.30.71.1-1.00.90.30.9
Distance traveled after self-admin0.10.20.40.6-0.7-0.3-0.3
Extensor digitorum longus weight6.224.827.5-5.14.75.24.9
Bone: elastic displacement3.03.84.5-1.72.11.82.1
Bone: elastic work1.41.92.5-1.11.61.21.5
Bone: endosteal estimation3.99.411.4-3.43.03.02.9
Bone: endosteal perimeter1.33.34.7-2.21.71.81.5
Epididymis fat weight0.00.10.2-0.50.10.50.1
Delta time in closed arm before/after self-admin0.20.10.20.4-0.5-0.1-0.4
Delta time in open arm before/after self-admin0.10.10.1-0.2-0.3-0.3-0.3
Diff in mean of infusions in LGA sessions0.20.30.50.00.70.50.7
Delay discount exponential model param0.30.40.60.8-0.7-0.5-0.7
Extinction: sum of active levers before priming3.24.85.1-2.12.32.12.3
Active lever presses in extinction session 60.10.10.10.10.3-0.10.3
Bone: final force0.10.10.3-0.2-0.3-0.0-0.5
Bone: final moment0.10.10.3-0.60.10.2-0.2
Food consumed during 24 hour testing period0.20.30.50.7-0.7-0.2-0.5
Glucose0.20.30.9-0.00.31.00.4
Heart weight0.30.51.1-0.80.21.00.3
Delay discount hyperbolic model param0.40.60.90.9-0.8-0.5-0.7
Intermittent access intake day 1-15 change1.05.76.72.5-2.5-1.9-2.6
Intermittent access intake escalation1.16.17.22.6-2.5-2.1-2.7
Intermittent access intake escalation 21.52.43.51.6-1.6-1.1-1.9
Intermitt. access day 1 inactive lever presses0.11.11.21.0-1.1-0.9-1.1
Intermitt. access day 15 inactive lever presses0.00.30.5-0.70.70.00.2
Intermitt. access escalation Index0.00.10.2-0.2-0.3-0.0-0.4
Intermittent access day 1 total infusions0.31.01.8-1.40.90.51.0
Intermittent access day 15 total infusions0.40.91.30.8-0.9-1.2-1.0
Intermittent access terminal intake (last 3 days)0.20.30.70.5-0.4-0.8-0.5
Intermittent access total infusions0.10.10.2-0.00.0-0.5-0.0
Intermittent access day 1 locomotion0.10.10.2-0.50.30.20.3
Intermittent access day 15 total locomotion0.10.20.40.6-0.5-0.3-0.5
Intermittent access total locomotion0.50.60.80.8-0.7-0.9-0.7
Intermittent access standard deviation0.21.01.31.0-0.9-1.2-1.0
Left kidney weight0.32.43.61.0-1.9-1.3-1.8
Right kidney weight0.32.43.60.9-1.9-1.4-1.8
Cocaine induced anxiety0.41.01.3-1.11.10.90.9
Post-drug Anxiety1.11.22.0-1.01.40.91.1
Baseline Anxiety0.20.30.7-0.30.80.50.6
Tail length1.26.47.6-2.82.52.32.5
Length with tail1.56.79.1-3.02.32.72.2
Length without tail0.21.22.5-1.60.51.40.4
Times rat made contact with spout0.00.00.10.3-0.0-0.1-0.1
Lifetime Intake0.10.20.3-0.50.6-0.20.4
Liver weight, left0.50.81.7-1.30.80.70.7
Liver weight, right2.64.56.11.2-2.5-2.2-2.4
Locomotor activity1.32.12.91.7-1.3-1.4-1.3
Locomotor testing distance0.82.02.91.5-1.2-1.7-1.2
Locomotor testing rearing0.10.41.20.5-0.4-1.1-0.2
Locomotion in novel chamber0.20.31.2-0.20.1-1.10.2
Locomotion in novel chamber post-restriction0.00.10.4-0.60.2-0.1-0.0
Fecal boli incidents, locomotor time 10.20.61.00.6-1.0-0.6-0.8
Change in fecal boli incidents, locomotor task1.71.82.31.4-1.5-1.0-1.5
Time >=10cm from walls, locomotor time 10.30.30.60.5-0.4-0.8-0.4
Bouts of movement, locomotor time 10.00.10.1-0.10.10.30.3
Total resting periods, locomotor time 10.20.20.4-0.30.30.70.6
Rest time, locomotor task time 10.10.10.3-0.0-0.20.60.1
Distance moved, locomotor task time 10.20.51.0-0.71.0-0.30.6
Vertical activity count, locomotor time 10.21.52.4-1.41.50.81.1
Time >=10cm from walls, locomotor time 20.72.02.21.5-1.5-1.3-1.4
Bouts of movement, locomotor time 20.30.91.6-0.11.21.01.1
Total resting periods, locomotor time 20.31.32.2-0.31.51.11.3
Rest time, locomotor task time 20.10.20.50.30.20.70.1
Distance moved, locomotor task time 20.60.81.3-1.11.00.41.0
Vertical activity count, locomotor time 21.22.93.9-2.01.81.31.7
Light reinforcement 10.10.30.50.5-0.5-0.7-0.4
Light reinforcement 20.00.00.10.30.1-0.20.1
Bone: marrow area3.79.011.0-3.33.02.92.8
Bone: maximum diameter0.20.51.3-1.10.70.30.4
Bone: maximum force0.61.21.8-1.41.11.10.8
Bone: maximum moment1.22.23.1-1.81.51.41.2
Mean time between licks in bursts0.10.50.80.9-0.80.3-0.7
Mean num. licks in bursts1.02.73.7-1.61.81.21.9
Cd content in liver2.02.22.7-1.01.51.61.6
Co content in liver0.30.40.5-0.70.60.60.7
Cu content in liver0.91.11.31.0-1.0-1.2-1.1
Fe content in liver0.20.20.4-0.50.30.60.3
K content in liver6.46.37.22.3-2.5-2.7-2.6
Mg content in liver5.05.57.42.1-2.2-2.7-2.3
Mn content in liver10.712.013.43.3-3.5-3.4-3.7
Na content in liver0.10.10.20.0-0.1-0.5-0.3
Rb content in liver1.61.92.91.1-1.3-1.7-1.3
Se content in liver10.112.013.13.5-3.4-3.6-3.3
Sr content in liver0.00.00.0-0.1-0.20.1-0.1
Zn content in liver0.91.12.21.0-0.8-1.5-0.7
Bone: minimum diameter1.22.42.7-1.71.71.41.5
Time in familiar zone, hab. session 11.11.21.61.3-1.2-0.7-1.1
Time in novel zone, hab. session 10.00.00.0-0.10.1-0.00.1
Total zone transitions, hab. session 11.62.23.0-1.11.61.51.7
Total locomotion distance, hab. session 10.20.30.5-0.30.60.50.7
Locomotion velocity, hab. session 10.40.61.0-0.50.90.61.0
Time in familiar zone, hab. session 23.54.05.32.3-1.9-2.0-1.8
Time in novel zone, hab. session 20.70.71.2-1.10.70.80.7
Total zone transitions, hab. session 21.01.21.6-1.01.11.31.0
Total locomotion distance, hab. session 20.10.10.2-0.30.30.50.2
Locomotion velocity, hab. session 20.30.30.7-0.50.50.80.5
Novel to familiar place preference ratio0.81.11.7-1.31.10.51.1
Novelty place preference0.70.81.4-1.20.90.40.9
Time in novel zone, NPP test0.20.30.6-0.80.5-0.00.5
Total zone transitions, NPP test2.13.03.5-1.51.81.91.8
Total locomotion distance, NPP test0.70.91.1-0.81.01.10.9
Locomotion velocity, NPP test1.92.72.9-1.51.71.71.6
Intraocular pressure2.84.65.5-2.02.32.02.3
Delta distance traveled before/after self-admin2.52.73.71.8-1.9-1.2-1.6
Delta ambulatory time before/after self-admin0.91.52.51.2-1.6-0.6-1.3
Parametrial fat weight0.00.10.20.10.40.50.2
Pavlov. Cond. lever latency0.30.40.7-0.60.50.80.7
Pavlov. Cond. magazine entry latency3.03.95.22.1-1.6-2.3-1.8
Pavlov. Cond. change in total contacts3.13.34.71.7-1.6-2.2-1.7
Pavlov. Cond. index score1.41.72.71.3-1.0-1.6-1.2
Pavlov. Cond. latency score1.11.42.21.1-0.9-1.5-1.2
Pavlov. Cond. lever contacts0.40.50.70.8-0.5-0.9-0.7
Pavlov. Cond. magazine entry number3.34.26.4-2.11.62.51.9
Pavlov. Cond. intertrial magazine entries0.30.40.6-0.80.50.50.6
Pavlov. Cond. lever-magazine prob. diff.2.02.53.41.7-1.2-1.8-1.5
Pavlov. Cond. response bias1.72.13.31.6-1.0-1.8-1.3
Pavlov. Cond. lever latency0.10.10.2-0.30.40.20.4
Pavlov. Cond. magazine entry latency0.00.00.00.0-0.00.2-0.0
Pavlov. Cond. change in total contacts0.10.20.30.2-0.4-0.4-0.5
Pavlov. Cond. index score0.00.00.10.1-0.30.0-0.2
Pavlov. Cond. latency score0.00.00.0-0.0-0.20.1-0.1
Pavlov. Cond. lever contacts0.00.10.10.2-0.3-0.1-0.3
Pavlov. Cond. magazine entry number0.20.20.3-0.60.50.30.5
Pavlov. Cond. intertrial magazine entries0.10.30.4-0.60.40.60.4
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.0-0.30.1-0.3
Pavlov. Cond. response bias0.30.50.60.6-0.7-0.6-0.8
Time in closed arm before self-admin1.01.72.01.4-1.4-1.2-1.2
Time in closed arm after self-admin2.52.94.02.0-1.9-1.1-1.6
Time in open arm before self-admin0.10.10.2-0.50.20.50.2
Time in open arm after self-admin0.40.51.3-1.10.60.50.3
Bone: periosteal estimation1.74.15.8-2.42.11.81.8
Bone: periosteal perimeter0.71.41.9-1.41.11.21.0
Bone: post-yield work1.01.72.4-1.61.11.41.1
Progressive ratio test 1 active lever presses0.20.30.6-0.60.80.00.7
Progressive ratio test 1 breakpoint0.20.30.5-0.60.70.10.6
Progressive ratio test 1 inactive lever presses0.00.00.1-0.30.20.10.3
Progressive ratio test 2 active lever presses0.20.20.5-0.40.7-0.10.4
Progressive ratio test 2 breakpoint0.10.20.4-0.30.6-0.10.4
Progressive ratio test 2 inactive lever presses0.00.20.3-0.30.60.10.4
Incentive Sensitization - Responses0.20.50.8-0.70.90.30.7
Incentive Sensitization - Breakpoint0.20.50.9-0.70.90.30.7
Sum of active levers in priming session hrs 5-60.20.10.30.4-0.2-0.6-0.2
Progressive ratio0.10.20.4-0.50.6-0.20.5
Food seeking constrained by brief footshock0.00.00.00.0-0.10.1-0.2
Seeking ratio, punishment vs. effort0.00.10.10.1-0.30.4-0.3
Retroperitoneal fat weight0.00.10.6-0.10.10.70.1
Reaction time number correct0.10.20.6-0.50.30.70.4
Reaction time mean minus median0.10.50.8-0.20.90.80.7
Reaction time mean minus median AUC0.00.20.40.00.60.40.4
Reaction time num false alarms1.22.12.91.7-1.6-0.9-1.5
Reaction time num false alarms AUC0.81.92.51.5-1.6-0.7-1.5
Reaction time trials correct on left0.10.20.6-0.50.30.70.4
Reaction time trials on left0.10.20.5-0.40.20.70.3
Reaction time mean0.51.11.90.8-0.8-1.4-1.0
Reaction time mean AUC0.20.51.20.5-0.4-1.1-0.7
Median of all reaction times1.52.34.01.0-1.4-2.0-1.6
Reaction time omissions0.20.30.50.7-0.4-0.6-0.4
Reaction time false alarm rate1.31.72.11.4-1.4-0.9-1.5
Reaction time premature initiation rate0.10.20.60.4-0.3-0.8-0.2
Reaction time premature initiations0.00.00.00.1-0.1-0.20.1
Std. dev. reaction times0.10.20.50.7-0.2-0.3-0.3
Reaction time trials completed0.10.20.5-0.40.20.70.3
Reaction time trials AUC0.00.20.4-0.40.10.70.2
Run reversals in cocaine runway, females0.91.02.1-1.40.70.51.0
Run reversals in cocaine runway, males1.51.62.4-1.51.50.51.3
Latency to leave start box in cocaine runway0.10.10.3-0.00.10.50.3
Latency to leave start box in cocaine runway, F0.30.40.6-0.70.40.80.7
Latency to leave start box in cocaine runway, M0.20.20.70.8-0.3-0.3-0.2
Std. dev. time between licks in bursts0.00.10.20.1-0.20.4-0.2
Total sessions with >9 infusions0.20.30.5-0.40.70.20.7
Short access day 1 total inactive lever presses0.30.61.4-0.61.20.20.8
Short access day 10 total inactive lever presses0.21.21.7-1.01.30.91.1
Short access day 1 total infusions0.10.30.5-0.60.7-0.30.5
Short access day 10 total infusions0.20.40.6-0.80.70.20.6
Short access total infusions0.30.40.6-0.70.80.00.7
Short access day 1 locomotion0.30.50.8-0.60.9-0.00.8
Short access day 10 total locomotion0.21.01.11.0-1.1-1.0-1.0
Short access total locomotion0.00.00.0-0.00.2-0.10.1
One hour access (0.3 mA shock)1.31.52.5-1.41.60.81.1
Compulsive drug intake0.10.20.5-0.70.30.20.2
One hour access (shock baseline)0.20.50.9-0.70.90.40.8
Social response proportion0.10.10.4-0.2-0.10.70.1
Social responses0.10.20.30.5-0.5-0.0-0.3
Social time0.91.41.7-0.91.31.21.2
Soleus weight0.10.20.6-0.30.30.80.4
Bone: stiffness0.00.00.1-0.1-0.20.0-0.4
Tibialis anterior weight1.03.43.5-1.91.81.81.8
Time to tail flick, vehicle, before self-admin0.30.40.7-0.80.60.60.6
Time to tail flick, vehicle, after self-admin1.93.95.1-1.42.02.22.3
Time to tail flick, test, before self-admin0.50.50.9-0.90.60.70.7
Time to tail flick, test, after self-admin0.30.40.70.2-0.8-0.4-0.8
Delta time to tail flick, vehicle, before/after SA0.80.91.3-0.31.01.11.1
Delta time to tail flick, test, before/after SA0.30.30.40.5-0.6-0.6-0.6
Tibia length0.00.10.3-0.4-0.10.5-0.1
Ambulatory time before self-admin0.51.62.1-1.41.40.81.4
Ambulatory time after self-admin0.00.00.1-0.2-0.20.30.1
Bone: tissue strength0.60.61.5-0.70.41.20.4
Total heroin consumption1.21.51.71.3-1.2-1.1-1.2
Bone: trabecular number0.71.32.11.2-0.8-1.4-1.0
Bone: trabecular spacing0.50.80.9-0.90.80.90.8
Bone: trabecular thickness0.00.10.10.3-0.30.1-0.3
Bone: trabecular tissue density0.00.00.0-0.2-0.20.1-0.2
Water consumed over 24 hours0.91.82.61.2-1.6-0.9-1.6
Number of responses in last shaping day0.00.00.10.30.0-0.0-0.2