Krt12

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Krt12 0.05 0.03 1.2e-04 0.03 0.04 0.03 0.02 1.3e-03 8.0e-05 1.8e-03 2.7e-03
2 PL gene expression Krt12 0.04 0.02 1.1e-04 0.03 0.03 0.03 0.03 4.6e-04 2.3e-04 3.8e-04 2.9e-04
3 NAcc gene expression Krt12 0.08 0.05 5.4e-05 0.04 0.04 0.04 0.04 1.8e-05 1.2e-05 9.0e-06 5.2e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.52.53.71.91.7-1.0
Area under the delay curve1.01.02.00.31.0-1.4
BMI with tail1.55.06.4-2.5-2.22.0
BMI without tail0.10.30.4-0.4-0.60.5
Body weight3.414.121.4-4.6-3.43.1
Weight adjusted by age0.20.20.4-0.60.30.3
Bone surface0.10.10.30.00.00.5
Bone volume0.10.20.30.40.10.5
Breakpoint value in progressive ratio session0.30.30.50.70.6-0.4
Number of licking bursts0.10.10.20.5-0.20.3
Context. condit. distance diff. score0.50.61.3-1.1-0.1-0.7
Locomotion velocity, session 10.10.10.2-0.4-0.30.1
Locomotion distance, session 11.31.62.6-1.6-1.20.9
Locomotion velocity, session 20.10.10.2-0.30.1-0.5
Locomotion distance, session 20.10.10.3-0.6-0.30.2
Locomotion velocity, session 30.20.30.50.20.4-0.7
Locomotion distance, session 30.10.10.2-0.5-0.40.0
Stereotopy head waving bouts, day 32.53.03.61.71.9-1.5
Stereotopy head waving duration, day 30.20.30.60.40.8-0.3
Locomotion velocity, session 72.22.43.0-1.3-1.51.7
Locomotion distance, session 72.02.52.9-1.5-1.71.5
Stereotopy head waving bouts, day 71.31.42.01.01.4-1.1
Stereotopy head waving duration, day 71.62.02.71.11.6-1.4
Locomotion velocity, session 83.64.38.8-3.0-1.90.8
Locomotion distance, session 80.50.71.8-1.3-0.5-0.2
Degree of sensitization distance3.03.03.3-1.8-1.81.6
Degree of sensitization stereotypy1.61.72.01.21.4-1.3
Conditioned locomotion0.50.60.70.60.9-0.8
Cocaine response after cond. corrected0.80.91.30.61.2-1.0
Cocaine response after cond. not corrected0.50.51.00.51.0-0.5
Cocaine response before conditioning0.20.30.7-0.2-0.30.8
Saline control response0.20.30.6-0.8-0.20.4
Bone: connectivity density2.23.55.02.22.0-1.2
Bone: cortical apparent density3.84.98.62.91.8-1.8
Bone: cortical area0.00.00.10.2-0.00.2
Bone: cortical porosity0.20.30.40.60.7-0.1
Bone: cortical porosity0.20.20.40.30.6-0.2
Bone: cortical thickness1.01.61.71.21.3-1.3
Bone: cortical thickness8.09.310.82.63.3-3.3
Bone: cortical tissue density3.84.98.62.91.8-1.7
Condit. Reinf. active minus inactive responses2.12.33.61.31.4-1.9
Condit. Reinf. active-inactive response ratio2.12.33.11.41.4-1.8
Condit. Reinf. active responses1.72.03.11.21.2-1.8
Condit. Reinf. inactive responses0.10.10.20.20.2-0.4
Incentive salience index mean1.51.92.11.41.2-1.5
Condit. Reinf. lever presses0.10.10.20.50.20.1
Condit. Reinf. active minus inactive responses0.30.41.11.00.3-0.3
Condit. Reinf. active-inactive response ratio0.00.10.10.40.00.1
Condit. Reinf. active responses0.81.12.61.60.7-0.5
Condit. Reinf. inactive responses1.51.83.41.91.1-0.8
Condit. Reinf. lever presses0.30.40.50.70.6-0.7
Condit. Reinf. lever reinforcers received1.11.63.11.81.0-0.8
Conditioned reinforcement - actives0.20.20.40.70.10.2
Conditioned reinforcement - inactives0.50.61.51.2-0.00.5
Conditioned locomotion0.20.20.50.7-0.10.5
Patch foraging indifference point 0 sec0.20.30.80.90.3-0.3
Patch foraging indifference point AUC0.00.00.00.10.10.2
Delay disc. indifference point, 0s delay1.21.31.91.11.0-1.4
Delay disc. indifference point, 16s delay3.83.86.70.72.1-2.6
Delay disc. indifference point, 2s delay0.30.40.80.90.5-0.3
Delay disc. indifference point, 24s delay0.30.30.5-0.7-0.2-0.6
Delay disc. indifference point, 4s delay2.62.73.81.01.8-2.0
Delay disc. indifference point, 8s delay0.00.00.00.0-0.00.0
Indifference point function ln k0.00.00.1-0.30.1-0.2
Indifference point function log k0.00.00.1-0.30.1-0.2
Patch foraging total patch changes 0 sec0.10.10.40.6-0.00.0
Patch foraging total patch changes 12 sec2.12.85.92.41.4-0.7
Patch foraging total patch changes 18 sec0.20.20.50.7-0.20.2
Patch foraging total patch changes 24 sec1.11.41.91.41.2-0.9
Patch foraging total patch changes 6 sec0.40.61.01.00.7-0.4
Patch foraging time to switch 0 sec0.20.20.30.50.4-0.6
Patch foraging water rate 0 sec0.00.00.00.1-0.00.1
Patch foraging water rate 12 sec0.00.00.10.20.1-0.1
Patch foraging water rate 18 sec0.30.40.80.50.9-0.4
Patch foraging water rate 24 sec0.10.20.30.60.30.3
Patch foraging water rate 6 sec1.52.32.61.61.5-1.4
Seeking ratio, delayed vs. immediate footshock0.81.01.70.70.8-1.3
Distance traveled before self-admin0.10.10.1-0.40.10.3
Distance traveled after self-admin0.50.61.1-1.0-0.60.6
Extensor digitorum longus weight6.626.035.9-6.0-5.04.1
Bone: elastic displacement0.30.40.6-0.1-0.80.8
Bone: elastic work0.20.20.30.50.5-0.4
Bone: endosteal estimation2.45.16.1-2.2-2.12.5
Bone: endosteal perimeter1.73.64.4-1.5-2.02.1
Epididymis fat weight0.41.02.2-0.5-0.71.5
Delta time in closed arm before/after self-admin1.51.52.8-1.7-1.10.7
Delta time in open arm before/after self-admin0.10.10.10.20.3-0.3
Diff in mean of infusions in LGA sessions0.10.10.20.40.3-0.1
Delay discount exponential model param0.90.91.8-0.1-0.91.4
Extinction: sum of active levers before priming1.51.51.8-1.4-1.31.1
Active lever presses in extinction session 62.42.33.91.62.0-0.8
Bone: final force0.10.20.30.50.60.2
Bone: final moment0.10.10.10.20.40.3
Food consumed during 24 hour testing period0.60.71.0-1.0-0.80.7
Glucose0.10.20.30.50.30.4
Heart weight3.34.77.2-2.7-2.31.4
Delay discount hyperbolic model param0.90.91.8-0.2-1.01.3
Intermittent access intake day 1-15 change2.22.14.02.01.1-1.1
Intermittent access intake escalation2.62.64.22.01.4-1.3
Intermittent access intake escalation 20.60.61.41.20.5-0.6
Intermitt. access day 1 inactive lever presses3.33.65.81.72.4-1.4
Intermitt. access day 15 inactive lever presses4.04.47.02.62.1-1.5
Intermitt. access escalation Index0.50.51.4-1.2-0.10.1
Intermittent access day 1 total infusions0.00.00.1-0.10.20.3
Intermittent access day 15 total infusions1.92.22.51.51.6-1.4
Intermittent access terminal intake (last 3 days)1.21.31.61.31.3-0.8
Intermittent access total infusions0.50.50.80.60.9-0.6
Intermittent access day 1 locomotion0.40.41.00.2-0.51.0
Intermittent access day 15 total locomotion0.70.81.10.9-0.71.1
Intermittent access total locomotion0.50.61.61.30.10.3
Intermittent access standard deviation3.13.35.92.41.6-1.2
Left kidney weight0.61.63.0-1.20.6-1.7
Right kidney weight0.51.42.6-0.21.2-1.6
Cocaine induced anxiety0.70.82.4-1.50.0-0.3
Post-drug Anxiety0.30.40.6-0.70.6-0.5
Baseline Anxiety0.30.41.01.00.10.3
Tail length0.10.20.4-0.70.0-0.3
Length with tail1.13.98.9-3.0-1.40.9
Length without tail1.63.67.2-2.7-1.31.4
Times rat made contact with spout0.10.20.30.5-0.30.4
Lifetime Intake0.70.81.40.61.2-0.8
Liver weight, left0.00.00.10.20.2-0.2
Liver weight, right2.74.57.31.42.7-2.0
Locomotor activity0.40.71.21.10.8-0.6
Locomotor testing distance1.72.84.72.21.4-1.3
Locomotor testing rearing5.28.111.03.32.8-2.3
Locomotion in novel chamber4.65.76.92.12.6-2.4
Locomotion in novel chamber post-restriction0.30.30.90.90.10.3
Fecal boli incidents, locomotor time 11.41.52.3-0.5-1.41.5
Change in fecal boli incidents, locomotor task0.30.30.5-0.00.6-0.7
Time >=10cm from walls, locomotor time 10.10.10.10.30.1-0.3
Bouts of movement, locomotor time 10.10.20.3-0.4-0.10.5
Total resting periods, locomotor time 10.91.01.6-1.0-0.71.2
Rest time, locomotor task time 11.51.64.1-0.0-0.82.0
Distance moved, locomotor task time 11.92.14.80.21.2-2.2
Vertical activity count, locomotor time 10.20.20.5-0.20.1-0.7
Time >=10cm from walls, locomotor time 20.60.71.51.20.7-0.2
Bouts of movement, locomotor time 20.40.40.80.50.9-0.4
Total resting periods, locomotor time 20.30.30.70.40.9-0.4
Rest time, locomotor task time 21.21.41.8-1.0-1.11.4
Distance moved, locomotor task time 20.30.40.8-0.30.5-0.9
Vertical activity count, locomotor time 20.10.10.2-0.5-0.1-0.4
Light reinforcement 11.83.24.82.21.8-1.2
Light reinforcement 20.60.81.20.61.0-1.1
Bone: marrow area2.24.85.6-2.1-2.12.4
Bone: maximum diameter0.00.00.10.2-0.00.2
Bone: maximum force0.20.30.8-0.4-0.30.9
Bone: maximum moment0.30.51.0-0.6-0.51.0
Mean time between licks in bursts3.04.25.6-1.2-2.42.4
Mean num. licks in bursts0.00.00.1-0.00.2-0.3
Cd content in liver0.10.10.30.10.5-0.2
Co content in liver0.40.51.1-1.0-0.50.1
Cu content in liver0.30.40.90.00.5-0.9
Fe content in liver0.30.31.0-1.0-0.1-0.1
K content in liver4.34.25.02.02.2-2.0
Mg content in liver4.95.16.32.02.2-2.5
Mn content in liver5.36.07.42.72.3-2.3
Na content in liver0.80.81.31.11.1-0.3
Rb content in liver0.81.01.11.10.8-1.0
Se content in liver7.89.59.63.13.1-3.1
Sr content in liver0.00.00.00.20.1-0.2
Zn content in liver1.51.72.31.51.3-1.1
Bone: minimum diameter0.40.71.0-0.8-0.71.0
Time in familiar zone, hab. session 10.20.20.40.30.6-0.3
Time in novel zone, hab. session 10.20.20.50.7-0.1-0.1
Total zone transitions, hab. session 11.11.53.4-1.9-1.00.3
Total locomotion distance, hab. session 10.20.30.8-0.20.4-0.9
Locomotion velocity, hab. session 10.20.30.4-0.60.3-0.7
Time in familiar zone, hab. session 22.82.94.21.21.7-2.1
Time in novel zone, hab. session 20.70.71.6-0.0-0.81.3
Total zone transitions, hab. session 21.31.72.3-1.5-1.41.0
Total locomotion distance, hab. session 20.50.70.8-0.8-0.90.9
Locomotion velocity, hab. session 20.70.91.0-1.0-0.90.9
Novel to familiar place preference ratio0.20.20.3-0.60.3-0.5
Novelty place preference0.20.20.3-0.60.2-0.5
Time in novel zone, NPP test0.30.30.6-0.20.5-0.8
Total zone transitions, NPP test1.52.22.5-1.6-1.51.3
Total locomotion distance, NPP test0.50.70.8-0.8-0.90.8
Locomotion velocity, NPP test1.01.51.7-1.3-1.31.1
Intraocular pressure3.34.67.3-2.7-2.31.1
Delta distance traveled before/after self-admin0.20.20.4-0.6-0.50.0
Delta ambulatory time before/after self-admin0.20.20.3-0.5-0.50.0
Parametrial fat weight0.81.62.31.51.4-0.7
Pavlov. Cond. lever latency0.40.50.8-0.9-0.90.3
Pavlov. Cond. magazine entry latency5.67.210.23.22.8-2.0
Pavlov. Cond. change in total contacts5.45.86.52.42.5-2.2
Pavlov. Cond. index score2.53.25.22.31.8-1.0
Pavlov. Cond. latency score1.62.03.31.81.5-0.6
Pavlov. Cond. lever contacts0.20.20.30.60.40.3
Pavlov. Cond. magazine entry number6.48.011.2-3.3-2.82.2
Pavlov. Cond. intertrial magazine entries0.40.50.8-0.9-0.80.2
Pavlov. Cond. lever-magazine prob. diff.2.93.66.02.51.9-1.1
Pavlov. Cond. response bias4.45.36.72.62.4-1.8
Pavlov. Cond. lever latency0.30.40.9-1.0-0.40.3
Pavlov. Cond. magazine entry latency0.10.10.1-0.3-0.30.3
Pavlov. Cond. change in total contacts0.30.51.31.10.2-0.1
Pavlov. Cond. index score0.10.10.30.60.0-0.0
Pavlov. Cond. latency score0.10.10.20.4-0.20.2
Pavlov. Cond. lever contacts0.40.61.31.10.5-0.4
Pavlov. Cond. magazine entry number0.10.10.1-0.3-0.20.3
Pavlov. Cond. intertrial magazine entries1.01.32.5-1.6-1.00.6
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.4-0.00.1
Pavlov. Cond. response bias0.71.01.71.30.8-0.8
Time in closed arm before self-admin0.91.01.61.30.8-0.8
Time in closed arm after self-admin0.20.20.40.00.2-0.7
Time in open arm before self-admin0.80.91.7-1.3-0.70.7
Time in open arm after self-admin0.60.70.7-0.9-0.80.8
Bone: periosteal estimation0.50.91.5-0.8-0.81.2
Bone: periosteal perimeter0.91.62.3-0.9-1.31.5
Bone: post-yield work1.82.53.1-1.8-1.51.4
Progressive ratio test 1 active lever presses0.30.40.70.50.8-0.3
Progressive ratio test 1 breakpoint0.30.40.70.50.8-0.3
Progressive ratio test 1 inactive lever presses1.51.72.41.21.6-1.1
Progressive ratio test 2 active lever presses0.50.61.41.20.5-0.2
Progressive ratio test 2 breakpoint0.40.51.21.10.5-0.1
Progressive ratio test 2 inactive lever presses0.30.40.80.90.5-0.3
Incentive Sensitization - Responses0.60.60.80.9-0.60.8
Incentive Sensitization - Breakpoint0.50.51.01.0-0.50.6
Sum of active levers in priming session hrs 5-61.81.82.51.01.6-1.3
Progressive ratio0.10.10.20.50.3-0.2
Food seeking constrained by brief footshock0.30.40.50.50.7-0.7
Seeking ratio, punishment vs. effort0.00.00.0-0.1-0.1-0.1
Retroperitoneal fat weight0.00.20.3-0.6-0.10.4
Reaction time number correct1.31.82.6-1.2-1.21.6
Reaction time mean minus median1.52.03.2-0.7-1.51.8
Reaction time mean minus median AUC0.60.81.5-0.3-1.01.2
Reaction time num false alarms0.20.20.70.80.1-0.0
Reaction time num false alarms AUC0.20.30.50.7-0.30.4
Reaction time trials correct on left1.31.82.6-1.2-1.21.6
Reaction time trials on left1.31.82.6-1.2-1.21.6
Reaction time mean0.60.81.11.00.8-0.8
Reaction time mean AUC0.71.01.11.11.0-0.9
Median of all reaction times2.12.83.11.81.6-1.7
Reaction time omissions0.70.91.61.30.9-0.6
Reaction time false alarm rate0.50.61.51.20.4-0.5
Reaction time premature initiation rate3.34.56.11.32.5-2.3
Reaction time premature initiations0.81.11.90.41.4-1.0
Std. dev. reaction times0.30.40.80.2-0.60.9
Reaction time trials completed1.31.82.6-1.2-1.21.6
Reaction time trials AUC1.31.82.7-1.1-1.31.7
Run reversals in cocaine runway, females1.21.12.9-1.70.1-0.8
Run reversals in cocaine runway, males0.50.51.00.20.6-1.0
Latency to leave start box in cocaine runway0.50.50.9-1.0-0.80.1
Latency to leave start box in cocaine runway, F0.40.41.1-1.0-0.30.0
Latency to leave start box in cocaine runway, M0.20.20.30.50.1-0.6
Std. dev. time between licks in bursts0.30.40.70.1-0.70.9
Total sessions with >9 infusions1.21.31.70.91.3-1.1
Short access day 1 total inactive lever presses0.90.91.51.01.2-0.5
Short access day 10 total inactive lever presses0.10.10.2-0.30.4-0.1
Short access day 1 total infusions1.82.03.60.81.9-1.3
Short access day 10 total infusions0.20.20.40.40.6-0.0
Short access total infusions1.31.52.70.61.6-1.2
Short access day 1 locomotion2.62.83.41.81.8-1.3
Short access day 10 total locomotion1.01.12.01.4-0.21.1
Short access total locomotion0.30.30.50.70.10.5
One hour access (0.3 mA shock)0.00.00.10.20.20.0
Compulsive drug intake1.41.41.8-1.1-1.41.1
One hour access (shock baseline)0.70.91.30.91.2-0.7
Social response proportion0.30.40.8-0.9-0.1-0.6
Social responses0.10.10.2-0.10.3-0.5
Social time1.11.52.2-1.0-1.21.5
Soleus weight0.20.51.0-0.4-0.61.0
Bone: stiffness0.10.10.2-0.20.50.1
Tibialis anterior weight0.82.75.3-2.3-1.21.1
Time to tail flick, vehicle, before self-admin1.61.72.3-0.7-1.51.5
Time to tail flick, vehicle, after self-admin1.01.12.2-0.6-0.81.5
Time to tail flick, test, before self-admin0.90.91.1-1.0-1.00.7
Time to tail flick, test, after self-admin0.80.81.5-0.3-0.91.2
Delta time to tail flick, vehicle, before/after SA0.20.20.50.30.10.7
Delta time to tail flick, test, before/after SA0.10.10.30.60.20.1
Tibia length1.33.86.9-2.6-1.51.5
Ambulatory time before self-admin0.30.30.5-0.7-0.30.5
Ambulatory time after self-admin1.21.32.3-1.5-0.90.9
Bone: tissue strength3.03.03.6-1.3-1.91.9
Total heroin consumption0.91.02.21.50.8-0.3
Bone: trabecular number3.55.58.02.82.5-1.5
Bone: trabecular spacing1.62.13.5-1.9-1.40.9
Bone: trabecular thickness0.20.20.30.5-0.20.5
Bone: trabecular tissue density0.00.10.1-0.3-0.1-0.2
Water consumed over 24 hours0.30.40.6-0.3-0.70.8
Number of responses in last shaping day1.41.52.21.51.1-1.0