Krt12

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Krt12 0.07 0.04 1.1e-05 0.02 0.05 0.03 0.03 2.3e-03 4.0e-05 3.7e-04 3.7e-04
2 PL gene expression Krt12 0.03 0.02 1.3e-03 0.02 0.02 0.02 0.02 1.2e-03 1.2e-03 2.8e-03 3.5e-03
3 NAcc gene expression Krt12 0.04 0.03 2.0e-05 0.03 0.03 0.02 0.02 5.8e-05 3.5e-05 2.1e-04 1.8e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.22.23.21.81.60.9
Area under the delay curve0.91.42.40.51.21.6
BMI with tail1.45.06.6-2.6-2.1-2.0
BMI without tail0.42.33.5-1.9-1.4-1.3
Body weight3.515.226.2-5.1-3.5-2.7
Weight adjusted by age0.20.40.7-0.60.50.8
Bone surface0.10.10.4-0.1-0.1-0.7
Bone volume0.10.20.60.30.1-0.8
Breakpoint value in progressive ratio session0.10.20.40.30.60.5
Number of licking bursts0.10.41.00.3-0.2-1.0
Context. condit. distance diff. score0.50.61.0-1.0-0.10.8
Locomotion velocity, session 10.20.20.3-0.4-0.2-0.5
Locomotion distance, session 11.31.62.4-1.6-1.0-1.2
Locomotion velocity, session 20.00.00.1-0.4-0.00.1
Locomotion distance, session 20.10.20.4-0.6-0.2-0.4
Locomotion velocity, session 30.10.20.30.10.40.5
Locomotion distance, session 30.20.20.3-0.6-0.4-0.3
Stereotopy head waving bouts, day 32.53.03.11.71.81.7
Stereotopy head waving duration, day 30.40.50.70.50.70.8
Locomotion velocity, session 72.02.22.7-1.4-1.5-1.6
Locomotion distance, session 72.02.63.0-1.5-1.7-1.6
Stereotopy head waving bouts, day 71.51.72.31.21.51.2
Stereotopy head waving duration, day 71.92.33.11.11.81.6
Locomotion velocity, session 83.54.28.4-2.9-1.9-0.8
Locomotion distance, session 80.40.71.8-1.3-0.4-0.0
Degree of sensitization distance2.42.63.1-1.7-1.8-1.3
Degree of sensitization stereotypy1.51.72.21.21.51.2
Conditioned locomotion0.50.60.70.70.80.7
Cocaine response after cond. corrected0.61.01.50.61.21.0
Cocaine response after cond. not corrected0.40.61.00.41.00.8
Cocaine response before conditioning0.20.20.3-0.5-0.6-0.4
Saline control response0.50.61.7-1.3-0.4-0.0
Bone: connectivity density1.82.84.22.11.81.0
Bone: cortical apparent density3.04.78.62.91.91.5
Bone: cortical area0.00.00.10.10.1-0.2
Bone: cortical porosity0.70.71.10.91.00.5
Bone: cortical porosity0.30.40.70.40.80.5
Bone: cortical thickness0.91.51.81.11.31.3
Bone: cortical thickness6.17.58.92.33.02.9
Bone: cortical tissue density3.04.78.72.91.81.5
Condit. Reinf. active minus inactive responses1.61.92.01.41.31.4
Condit. Reinf. active-inactive response ratio1.71.91.91.41.31.4
Condit. Reinf. active responses1.21.51.81.31.21.2
Condit. Reinf. inactive responses0.00.00.10.30.20.1
Incentive salience index mean1.11.41.91.41.21.0
Condit. Reinf. lever presses0.10.10.30.60.30.0
Condit. Reinf. active minus inactive responses0.20.41.01.00.4-0.2
Condit. Reinf. active-inactive response ratio0.00.10.20.40.1-0.2
Condit. Reinf. active responses0.60.92.11.50.7-0.2
Condit. Reinf. inactive responses0.81.22.61.61.00.1
Condit. Reinf. lever presses0.20.30.40.70.60.3
Condit. Reinf. lever reinforcers received0.91.22.71.61.00.1
Conditioned reinforcement - actives0.00.20.3-0.2-0.5-0.5
Conditioned reinforcement - inactives0.10.20.30.0-0.6-0.4
Conditioned locomotion0.20.20.40.5-0.1-0.6
Patch foraging indifference point 0 sec0.00.10.30.6-0.0-0.2
Patch foraging indifference point AUC0.10.10.30.10.50.4
Delay disc. indifference point, 0s delay1.01.11.61.31.10.8
Delay disc. indifference point, 16s delay2.94.17.60.82.02.8
Delay disc. indifference point, 2s delay0.40.40.90.90.60.0
Delay disc. indifference point, 24s delay0.20.30.5-0.7-0.20.4
Delay disc. indifference point, 4s delay2.62.84.01.11.82.0
Delay disc. indifference point, 8s delay0.00.00.00.0-0.0-0.0
Indifference point function ln k0.00.10.2-0.3-0.00.5
Indifference point function log k0.00.10.2-0.3-0.00.5
Patch foraging total patch changes 0 sec0.10.20.30.2-0.4-0.5
Patch foraging total patch changes 12 sec1.31.73.81.91.20.0
Patch foraging total patch changes 18 sec0.10.30.80.3-0.4-0.9
Patch foraging total patch changes 24 sec0.20.71.01.01.00.5
Patch foraging total patch changes 6 sec0.10.10.20.40.20.2
Patch foraging time to switch 0 sec0.00.10.10.40.40.2
Patch foraging water rate 0 sec0.00.00.00.2-0.0-0.0
Patch foraging water rate 12 sec0.00.00.00.20.2-0.0
Patch foraging water rate 18 sec0.20.50.80.50.90.5
Patch foraging water rate 24 sec0.10.10.20.50.2-0.0
Patch foraging water rate 6 sec1.21.82.51.61.41.0
Seeking ratio, delayed vs. immediate footshock0.30.51.00.50.51.0
Distance traveled before self-admin0.20.51.00.10.71.0
Distance traveled after self-admin0.10.10.3-0.5-0.00.4
Extensor digitorum longus weight6.024.035.1-5.9-5.0-3.4
Bone: elastic displacement0.40.60.9-0.2-0.9-1.0
Bone: elastic work0.20.20.40.50.60.3
Bone: endosteal estimation1.94.75.1-2.2-2.1-2.2
Bone: endosteal perimeter1.63.85.0-1.6-2.0-2.2
Epididymis fat weight0.10.30.8-0.9-0.3-0.2
Delta time in closed arm before/after self-admin1.21.12.3-1.5-0.9-0.5
Delta time in open arm before/after self-admin0.30.40.90.10.41.0
Diff in mean of infusions in LGA sessions0.10.10.10.40.40.1
Delay discount exponential model param0.91.32.5-0.3-1.1-1.6
Extinction: sum of active levers before priming0.91.32.6-1.6-1.0-0.7
Active lever presses in extinction session 61.81.83.00.71.71.4
Bone: final force0.10.10.30.30.6-0.0
Bone: final moment0.00.10.20.10.4-0.1
Food consumed during 24 hour testing period0.30.71.0-1.0-0.8-0.6
Glucose0.10.10.30.10.1-0.6
Heart weight2.94.66.9-2.6-2.1-1.7
Delay discount hyperbolic model param0.81.01.9-0.3-1.0-1.4
Intermittent access intake day 1-15 change0.31.72.91.71.30.7
Intermittent access intake escalation0.31.52.51.61.20.7
Intermittent access intake escalation 20.10.20.40.60.1-0.4
Intermitt. access day 1 inactive lever presses0.34.45.31.72.32.3
Intermitt. access day 15 inactive lever presses0.21.22.41.60.80.6
Intermitt. access escalation Index0.10.40.8-0.90.40.6
Intermittent access day 1 total infusions0.00.10.2-0.5-0.10.5
Intermittent access day 15 total infusions0.51.31.80.81.21.3
Intermittent access terminal intake (last 3 days)0.61.01.20.81.01.1
Intermittent access total infusions0.50.61.20.30.71.1
Intermittent access day 1 locomotion0.10.20.3-0.1-0.5-0.5
Intermittent access day 15 total locomotion0.10.30.50.7-0.1-0.7
Intermittent access total locomotion0.40.51.31.20.50.1
Intermittent access standard deviation0.52.64.62.11.51.1
Left kidney weight0.10.50.8-0.50.70.9
Right kidney weight0.10.61.10.11.10.8
Cocaine induced anxiety0.41.23.3-1.8-0.30.4
Post-drug Anxiety0.60.71.3-1.2-0.10.8
Baseline Anxiety0.20.31.01.0-0.0-0.3
Tail length0.10.71.8-1.3-0.30.3
Length with tail1.04.49.6-3.1-1.6-0.9
Length without tail1.57.811.4-3.4-2.7-2.3
Times rat made contact with spout0.20.20.30.5-0.3-0.6
Lifetime Intake0.81.02.00.30.91.4
Liver weight, left0.61.11.8-1.3-0.9-0.7
Liver weight, right2.23.85.70.92.22.4
Locomotor activity0.40.61.01.00.90.1
Locomotor testing distance1.02.44.02.01.60.8
Locomotor testing rearing1.86.79.13.02.62.1
Locomotion in novel chamber2.73.74.01.72.02.0
Locomotion in novel chamber post-restriction0.10.20.40.60.0-0.4
Fecal boli incidents, locomotor time 10.51.32.0-0.4-1.3-1.4
Change in fecal boli incidents, locomotor task0.40.40.80.40.90.6
Time >=10cm from walls, locomotor time 10.00.00.00.20.10.2
Bouts of movement, locomotor time 10.10.10.2-0.5-0.20.1
Total resting periods, locomotor time 10.50.60.9-0.9-0.8-0.5
Rest time, locomotor task time 10.50.81.5-0.2-0.9-1.2
Distance moved, locomotor task time 10.51.42.90.11.11.7
Vertical activity count, locomotor time 10.00.00.1-0.3-0.00.1
Time >=10cm from walls, locomotor time 20.20.51.01.00.7-0.2
Bouts of movement, locomotor time 20.10.40.60.60.70.5
Total resting periods, locomotor time 20.10.30.40.40.70.6
Rest time, locomotor task time 20.50.91.0-1.0-1.0-0.8
Distance moved, locomotor task time 20.20.30.5-0.40.50.7
Vertical activity count, locomotor time 20.10.10.3-0.6-0.20.0
Light reinforcement 10.52.33.51.91.60.9
Light reinforcement 20.30.71.20.61.10.7
Bone: marrow area1.84.54.7-2.2-2.0-2.2
Bone: maximum diameter0.00.10.20.1-0.1-0.4
Bone: maximum force0.10.20.3-0.5-0.1-0.5
Bone: maximum moment0.20.30.5-0.7-0.3-0.6
Mean time between licks in bursts0.84.87.0-1.5-2.3-2.6
Mean num. licks in bursts0.10.20.70.10.20.8
Cd content in liver1.31.52.0-1.4-1.4-0.8
Co content in liver1.41.62.5-1.6-1.4-0.6
Cu content in liver0.30.40.90.20.41.0
Fe content in liver1.01.33.2-1.8-0.8-0.2
K content in liver4.74.66.01.92.52.0
Mg content in liver3.84.14.61.82.12.1
Mn content in liver2.42.74.72.21.60.8
Na content in liver1.01.21.71.11.30.7
Rb content in liver0.20.20.40.60.30.4
Se content in liver8.710.312.13.53.32.8
Sr content in liver0.00.00.00.1-0.10.0
Zn content in liver4.35.05.72.12.22.4
Bone: minimum diameter0.30.60.8-0.8-0.7-0.9
Time in familiar zone, hab. session 10.20.20.50.30.70.1
Time in novel zone, hab. session 10.20.20.60.8-0.10.1
Total zone transitions, hab. session 10.91.33.0-1.7-0.9-0.0
Total locomotion distance, hab. session 10.20.30.8-0.00.40.9
Locomotion velocity, hab. session 10.20.30.7-0.40.30.9
Time in familiar zone, hab. session 22.12.43.21.31.81.5
Time in novel zone, hab. session 20.50.50.8-0.2-0.9-0.9
Total zone transitions, hab. session 21.31.62.2-1.5-1.3-1.0
Total locomotion distance, hab. session 20.50.60.7-0.8-0.8-0.8
Locomotion velocity, hab. session 20.60.80.9-1.0-0.9-0.8
Novel to familiar place preference ratio0.30.40.7-0.60.20.9
Novelty place preference0.30.40.8-0.50.20.9
Time in novel zone, NPP test0.40.41.1-0.20.51.0
Total zone transitions, NPP test1.62.42.6-1.6-1.5-1.5
Total locomotion distance, NPP test0.60.81.0-0.8-0.8-1.0
Locomotion velocity, NPP test1.11.51.8-1.3-1.2-1.1
Intraocular pressure3.15.18.2-2.9-2.5-1.1
Delta distance traveled before/after self-admin0.20.20.4-0.7-0.4-0.2
Delta ambulatory time before/after self-admin0.20.40.6-0.8-0.6-0.5
Parametrial fat weight0.10.30.40.60.70.3
Pavlov. Cond. lever latency0.20.20.3-0.5-0.6-0.3
Pavlov. Cond. magazine entry latency5.06.49.43.12.61.7
Pavlov. Cond. change in total contacts5.55.96.02.42.42.5
Pavlov. Cond. index score2.43.04.82.21.81.1
Pavlov. Cond. latency score1.62.03.11.71.50.9
Pavlov. Cond. lever contacts0.20.30.50.70.60.2
Pavlov. Cond. magazine entry number6.27.911.2-3.3-2.8-2.1
Pavlov. Cond. intertrial magazine entries0.40.50.7-0.8-0.8-0.4
Pavlov. Cond. lever-magazine prob. diff.3.13.96.12.52.01.2
Pavlov. Cond. response bias4.65.77.32.72.51.9
Pavlov. Cond. lever latency0.30.40.9-1.0-0.60.1
Pavlov. Cond. magazine entry latency0.10.10.1-0.2-0.3-0.3
Pavlov. Cond. change in total contacts0.20.51.11.10.1-0.5
Pavlov. Cond. index score0.10.20.30.5-0.0-0.5
Pavlov. Cond. latency score0.10.20.40.4-0.1-0.6
Pavlov. Cond. lever contacts0.20.30.70.80.4-0.2
Pavlov. Cond. magazine entry number0.10.10.2-0.5-0.30.0
Pavlov. Cond. intertrial magazine entries0.61.42.9-1.7-1.1-0.1
Pavlov. Cond. lever-magazine prob. diff.0.10.10.30.4-0.1-0.5
Pavlov. Cond. response bias0.50.71.41.20.80.1
Time in closed arm before self-admin0.91.52.41.51.20.8
Time in closed arm after self-admin0.40.40.60.60.70.5
Time in open arm before self-admin0.40.51.1-1.0-0.5-0.5
Time in open arm after self-admin0.20.20.5-0.7-0.5-0.0
Bone: periosteal estimation0.41.01.4-0.9-0.8-1.2
Bone: periosteal perimeter0.91.82.8-1.1-1.2-1.7
Bone: post-yield work1.11.92.9-1.7-1.3-1.1
Progressive ratio test 1 active lever presses0.20.30.60.10.50.8
Progressive ratio test 1 breakpoint0.10.20.40.10.40.6
Progressive ratio test 1 inactive lever presses0.20.61.40.10.71.2
Progressive ratio test 2 active lever presses0.20.30.60.70.40.4
Progressive ratio test 2 breakpoint0.30.40.70.80.50.4
Progressive ratio test 2 inactive lever presses0.00.00.10.30.10.1
Incentive Sensitization - Responses0.10.30.60.8-0.3-0.6
Incentive Sensitization - Breakpoint0.10.30.60.8-0.2-0.6
Sum of active levers in priming session hrs 5-61.21.11.70.61.31.2
Progressive ratio0.10.30.40.50.60.4
Food seeking constrained by brief footshock0.40.50.70.70.90.5
Seeking ratio, punishment vs. effort0.00.00.0-0.1-0.1-0.0
Retroperitoneal fat weight0.00.10.10.00.30.2
Reaction time number correct0.41.41.5-1.2-1.2-1.1
Reaction time mean minus median0.21.52.1-0.8-1.5-1.3
Reaction time mean minus median AUC0.10.50.8-0.3-0.9-0.8
Reaction time num false alarms0.20.40.50.70.1-0.7
Reaction time num false alarms AUC0.30.71.60.6-0.2-1.3
Reaction time trials correct on left0.41.41.5-1.2-1.2-1.1
Reaction time trials on left0.41.41.4-1.2-1.2-1.1
Reaction time mean0.51.01.41.20.90.9
Reaction time mean AUC0.51.31.51.21.11.1
Median of all reaction times2.03.13.61.91.71.6
Reaction time omissions0.20.40.60.80.60.4
Reaction time false alarm rate0.50.61.41.20.5-0.5
Reaction time premature initiation rate2.74.25.51.32.32.3
Reaction time premature initiations0.41.21.90.31.21.4
Std. dev. reaction times0.10.20.30.3-0.4-0.5
Reaction time trials completed0.41.41.4-1.2-1.2-1.1
Reaction time trials AUC0.41.51.6-1.1-1.2-1.2
Run reversals in cocaine runway, females1.21.32.0-1.40.21.4
Run reversals in cocaine runway, males0.20.20.50.00.20.7
Latency to leave start box in cocaine runway0.60.80.9-0.9-0.9-0.9
Latency to leave start box in cocaine runway, F0.50.71.6-1.3-0.7-0.2
Latency to leave start box in cocaine runway, M0.20.20.40.4-0.1-0.6
Std. dev. time between licks in bursts0.40.82.0-0.0-0.6-1.4
Total sessions with >9 infusions0.80.91.90.30.91.4
Short access day 1 total inactive lever presses0.51.01.70.70.81.3
Short access day 10 total inactive lever presses0.00.10.2-0.4-0.5-0.2
Short access day 1 total infusions1.63.26.50.41.72.5
Short access day 10 total infusions0.40.60.90.50.81.0
Short access total infusions1.31.93.70.51.31.9
Short access day 1 locomotion1.22.13.10.91.51.7
Short access day 10 total locomotion0.31.12.81.70.3-0.8
Short access total locomotion0.10.10.20.50.2-0.1
One hour access (0.3 mA shock)0.10.10.2-0.4-0.4-0.1
Compulsive drug intake0.10.20.3-0.5-0.50.2
One hour access (shock baseline)0.10.40.60.30.70.8
Social response proportion0.20.20.6-0.8-0.00.4
Social responses0.00.00.1-0.20.30.1
Social time0.71.11.3-1.0-1.1-1.1
Soleus weight0.30.81.7-0.5-0.6-1.3
Bone: stiffness0.20.30.4-0.20.70.6
Tibialis anterior weight0.62.14.8-2.2-1.2-0.5
Time to tail flick, vehicle, before self-admin1.72.13.1-0.8-1.6-1.7
Time to tail flick, vehicle, after self-admin0.20.50.6-0.6-0.8-0.7
Time to tail flick, test, before self-admin0.30.40.7-0.9-0.5-0.3
Time to tail flick, test, after self-admin1.01.12.2-0.2-1.0-1.5
Delta time to tail flick, vehicle, before/after SA0.10.10.20.40.2-0.2
Delta time to tail flick, test, before/after SA0.20.30.70.80.1-0.3
Tibia length1.13.26.7-2.6-1.4-0.9
Ambulatory time before self-admin0.10.20.5-0.20.30.7
Ambulatory time after self-admin0.30.41.2-1.1-0.30.1
Bone: tissue strength2.93.13.5-1.5-1.9-1.8
Total heroin consumption1.21.42.61.61.20.2
Bone: trabecular number2.75.17.82.82.41.3
Bone: trabecular spacing1.31.93.4-1.9-1.3-0.8
Bone: trabecular thickness0.30.40.80.4-0.3-0.9
Bone: trabecular tissue density0.10.20.5-0.4-0.00.7
Water consumed over 24 hours0.51.01.9-0.4-0.9-1.4
Number of responses in last shaping day0.20.30.90.90.30.2