Kcnk3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Kcnk3 0.06 0.05 3.5e-06 0.04 0.04 0.03 0.04 4.8e-05 3.5e-05 3.8e-04 6.7e-05
2 IC gene expression Kcnk3 0.05 0.05 8.8e-03 0.03 0.04 0.04 0.03 1.7e-02 8.5e-03 1.1e-02 1.4e-02
3 Liver gene expression Kcnk3 0.03 0.03 5.9e-03 0.02 0.01 0.02 0.01 5.4e-03 9.9e-03 5.8e-03 8.1e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density2.44.24.9-2.2-2.11.9
Area under the delay curve0.00.00.0-0.0-0.0-0.2
BMI with tail1.75.86.72.22.4-2.6
BMI without tail1.85.65.92.32.4-2.4
Body weight2.410.611.13.33.3-3.1
Weight adjusted by age0.00.10.20.00.1-0.4
Bone surface0.40.81.1-1.1-0.90.7
Bone volume1.12.02.2-1.5-1.41.3
Breakpoint value in progressive ratio session0.60.70.9-1.0-0.90.6
Number of licking bursts0.81.31.71.01.1-1.3
Context. condit. distance diff. score0.20.30.3-0.4-0.50.6
Locomotion velocity, session 10.60.60.70.70.8-0.9
Locomotion distance, session 10.40.50.6-0.8-0.70.7
Locomotion velocity, session 20.10.10.10.30.3-0.1
Locomotion distance, session 20.10.10.10.30.3-0.3
Locomotion velocity, session 30.10.10.3-0.5-0.40.1
Locomotion distance, session 30.00.00.1-0.10.0-0.3
Stereotopy head waving bouts, day 32.32.72.9-1.7-1.71.6
Stereotopy head waving duration, day 30.60.70.7-0.8-0.80.9
Locomotion velocity, session 70.00.00.1-0.3-0.1-0.1
Locomotion distance, session 70.70.91.30.80.9-1.1
Stereotopy head waving bouts, day 70.00.00.00.10.0-0.0
Stereotopy head waving duration, day 70.40.50.6-0.8-0.80.7
Locomotion velocity, session 80.40.50.6-0.8-0.80.7
Locomotion distance, session 80.20.30.4-0.6-0.60.6
Degree of sensitization distance1.01.01.11.01.0-0.9
Degree of sensitization stereotypy0.30.30.30.60.5-0.5
Conditioned locomotion3.23.74.2-2.0-2.01.7
Cocaine response after cond. corrected0.20.20.2-0.5-0.40.4
Cocaine response after cond. not corrected0.80.91.0-1.0-1.00.9
Cocaine response before conditioning2.83.33.4-1.8-1.81.8
Saline control response1.11.51.5-1.2-1.21.2
Bone: connectivity density1.62.53.2-1.8-1.61.3
Bone: cortical apparent density0.10.10.1-0.3-0.30.1
Bone: cortical area0.00.00.0-0.10.1-0.1
Bone: cortical porosity2.93.13.3-1.7-1.81.8
Bone: cortical porosity2.62.82.9-1.6-1.71.7
Bone: cortical thickness0.20.40.40.60.6-0.7
Bone: cortical thickness0.40.40.6-0.7-0.60.6
Bone: cortical tissue density0.00.00.1-0.2-0.20.1
Condit. Reinf. active minus inactive responses1.82.12.21.41.4-1.5
Condit. Reinf. active-inactive response ratio1.51.71.81.21.3-1.3
Condit. Reinf. active responses0.10.10.20.20.3-0.4
Condit. Reinf. inactive responses1.01.21.3-1.1-1.11.0
Incentive salience index mean0.20.20.30.40.5-0.5
Condit. Reinf. lever presses0.71.01.0-1.0-1.01.0
Condit. Reinf. active minus inactive responses1.51.92.5-1.6-1.51.0
Condit. Reinf. active-inactive response ratio0.60.70.8-0.9-0.90.6
Condit. Reinf. active responses0.91.31.9-1.4-1.20.8
Condit. Reinf. inactive responses0.30.40.6-0.8-0.60.4
Condit. Reinf. lever presses1.31.82.0-1.4-1.41.2
Condit. Reinf. lever reinforcers received0.91.21.8-1.3-1.20.7
Conditioned reinforcement - actives4.37.38.0-2.6-2.72.8
Conditioned reinforcement - inactives4.56.77.2-2.5-2.52.7
Conditioned locomotion1.82.42.7-1.4-1.51.7
Patch foraging indifference point 0 sec0.61.01.11.01.1-0.9
Patch foraging indifference point AUC0.00.00.1-0.2-0.1-0.2
Delay disc. indifference point, 0s delay1.51.62.01.41.3-1.1
Delay disc. indifference point, 16s delay0.00.00.10.10.1-0.4
Delay disc. indifference point, 2s delay0.20.20.20.40.4-0.5
Delay disc. indifference point, 24s delay1.71.92.1-1.3-1.41.4
Delay disc. indifference point, 4s delay0.10.10.20.30.3-0.5
Delay disc. indifference point, 8s delay0.00.00.0-0.1-0.10.1
Indifference point function ln k1.01.72.2-1.1-1.31.5
Indifference point function log k1.01.72.2-1.1-1.31.5
Patch foraging total patch changes 0 sec0.61.11.21.11.1-1.0
Patch foraging total patch changes 12 sec1.41.91.91.31.4-1.4
Patch foraging total patch changes 18 sec1.01.62.11.11.2-1.5
Patch foraging total patch changes 24 sec1.22.12.31.41.4-1.5
Patch foraging total patch changes 6 sec1.82.73.41.41.6-1.9
Patch foraging time to switch 0 sec0.20.30.50.50.6-0.7
Patch foraging water rate 0 sec0.61.21.6-0.9-1.11.2
Patch foraging water rate 12 sec0.10.20.30.60.4-0.3
Patch foraging water rate 18 sec0.50.81.2-0.6-0.81.1
Patch foraging water rate 24 sec0.30.40.60.80.6-0.5
Patch foraging water rate 6 sec0.10.10.20.1-0.10.4
Seeking ratio, delayed vs. immediate footshock0.10.10.10.20.3-0.3
Distance traveled before self-admin0.10.10.2-0.2-0.30.4
Distance traveled after self-admin1.31.61.91.41.3-1.1
Extensor digitorum longus weight2.610.312.3-3.5-3.32.7
Bone: elastic displacement1.51.81.8-1.3-1.31.4
Bone: elastic work0.60.80.9-0.9-0.90.8
Bone: endosteal estimation0.10.30.4-0.6-0.50.6
Bone: endosteal perimeter0.00.00.1-0.2-0.10.1
Epididymis fat weight17.058.260.87.87.7-7.4
Delta time in closed arm before/after self-admin0.10.10.10.30.3-0.2
Delta time in open arm before/after self-admin0.00.00.0-0.2-0.1-0.1
Diff in mean of infusions in LGA sessions0.00.10.10.20.2-0.3
Delay discount exponential model param0.10.10.10.30.3-0.1
Extinction: sum of active levers before priming0.50.50.6-0.7-0.70.8
Active lever presses in extinction session 61.71.71.8-1.3-1.31.2
Bone: final force0.00.00.00.00.1-0.1
Bone: final moment0.00.00.00.00.1-0.1
Food consumed during 24 hour testing period0.00.10.10.10.2-0.3
Glucose0.81.21.31.01.1-1.1
Heart weight1.62.43.01.71.6-1.3
Delay discount hyperbolic model param0.00.00.00.10.10.1
Intermittent access intake day 1-15 change0.51.01.4-0.8-0.91.2
Intermittent access intake escalation0.20.40.7-0.5-0.60.8
Intermittent access intake escalation 20.00.00.0-0.1-0.10.1
Intermitt. access day 1 inactive lever presses0.41.61.6-1.3-1.31.3
Intermitt. access day 15 inactive lever presses1.22.53.1-1.8-1.61.4
Intermitt. access escalation Index3.55.05.52.12.3-2.4
Intermittent access day 1 total infusions3.15.05.3-2.3-2.22.1
Intermittent access day 15 total infusions2.74.04.6-1.9-1.92.2
Intermittent access terminal intake (last 3 days)3.85.05.3-2.2-2.22.3
Intermittent access total infusions5.16.16.7-2.4-2.42.6
Intermittent access day 1 locomotion2.63.33.3-1.8-1.81.8
Intermittent access day 15 total locomotion0.20.30.3-0.5-0.50.6
Intermittent access total locomotion1.51.82.2-1.3-1.31.5
Intermittent access standard deviation1.22.42.5-1.5-1.51.6
Left kidney weight0.10.50.9-0.5-0.61.0
Right kidney weight0.10.30.60.80.6-0.2
Cocaine induced anxiety0.10.10.1-0.3-0.20.3
Post-drug Anxiety1.71.81.91.41.4-1.2
Baseline Anxiety3.84.44.42.12.1-2.1
Tail length0.00.10.20.40.30.1
Length with tail0.31.11.91.41.1-0.5
Length without tail0.10.20.30.60.4-0.2
Times rat made contact with spout0.70.81.0-1.0-0.90.7
Lifetime Intake5.76.97.7-2.5-2.62.8
Liver weight, left2.43.94.52.12.0-1.8
Liver weight, right4.37.59.53.12.8-2.3
Locomotor activity0.50.80.90.91.0-0.8
Locomotor testing distance0.10.20.40.30.5-0.6
Locomotor testing rearing0.30.70.9-1.0-0.80.7
Locomotion in novel chamber0.00.00.00.20.2-0.2
Locomotion in novel chamber post-restriction2.64.24.42.12.1-2.0
Fecal boli incidents, locomotor time 11.62.33.0-1.3-1.51.7
Change in fecal boli incidents, locomotor task4.24.14.32.12.0-2.0
Time >=10cm from walls, locomotor time 10.30.30.4-0.4-0.50.7
Bouts of movement, locomotor time 10.10.10.1-0.4-0.2-0.2
Total resting periods, locomotor time 10.10.10.2-0.4-0.2-0.2
Rest time, locomotor task time 10.20.20.30.40.4-0.6
Distance moved, locomotor task time 10.10.20.30.60.5-0.2
Vertical activity count, locomotor time 10.00.10.20.40.3-0.2
Time >=10cm from walls, locomotor time 21.11.61.8-1.2-1.31.3
Bouts of movement, locomotor time 20.30.50.60.70.7-0.7
Total resting periods, locomotor time 20.20.40.60.60.6-0.8
Rest time, locomotor task time 20.00.10.1-0.4-0.20.0
Distance moved, locomotor task time 20.00.00.10.30.2-0.1
Vertical activity count, locomotor time 20.00.00.1-0.0-0.20.3
Light reinforcement 10.61.41.9-1.4-1.21.0
Light reinforcement 21.01.51.8-1.4-1.31.0
Bone: marrow area0.10.30.4-0.6-0.50.5
Bone: maximum diameter0.00.10.1-0.4-0.20.1
Bone: maximum force0.00.00.0-0.2-0.10.2
Bone: maximum moment0.00.00.1-0.2-0.20.2
Mean time between licks in bursts1.02.42.91.71.6-1.3
Mean num. licks in bursts1.01.61.9-1.2-1.31.4
Cd content in liver0.00.00.00.10.1-0.0
Co content in liver5.96.97.1-2.6-2.62.7
Cu content in liver0.40.50.5-0.6-0.70.7
Fe content in liver2.02.42.5-1.6-1.51.6
K content in liver0.10.10.10.20.3-0.2
Mg content in liver0.00.00.1-0.00.10.3
Mn content in liver0.50.50.70.60.8-0.7
Na content in liver2.02.22.6-1.4-1.41.6
Rb content in liver0.10.10.10.20.3-0.2
Se content in liver0.10.10.10.30.4-0.2
Sr content in liver0.10.00.1-0.1-0.20.3
Zn content in liver0.50.60.80.90.9-0.5
Bone: minimum diameter0.40.70.90.80.9-0.8
Time in familiar zone, hab. session 10.90.80.90.90.9-0.9
Time in novel zone, hab. session 10.20.20.20.50.5-0.4
Total zone transitions, hab. session 10.10.20.2-0.4-0.40.3
Total locomotion distance, hab. session 10.50.70.9-0.8-0.80.9
Locomotion velocity, hab. session 11.21.71.7-1.3-1.31.3
Time in familiar zone, hab. session 20.30.30.40.40.5-0.7
Time in novel zone, hab. session 20.00.00.10.30.20.0
Total zone transitions, hab. session 20.10.20.30.30.4-0.5
Total locomotion distance, hab. session 20.20.20.30.30.4-0.6
Locomotion velocity, hab. session 20.10.10.20.10.2-0.4
Novel to familiar place preference ratio0.60.60.80.90.8-0.6
Novelty place preference1.01.01.31.11.1-0.8
Time in novel zone, NPP test0.91.01.31.11.1-0.8
Total zone transitions, NPP test1.01.41.5-1.2-1.21.1
Total locomotion distance, NPP test1.31.82.0-1.4-1.41.2
Locomotion velocity, NPP test1.82.62.9-1.7-1.61.5
Intraocular pressure5.27.58.02.82.8-2.6
Delta distance traveled before/after self-admin2.82.93.11.71.7-1.8
Delta ambulatory time before/after self-admin0.70.80.90.90.9-0.9
Parametrial fat weight18.944.444.96.76.6-6.7
Pavlov. Cond. lever latency0.60.70.90.90.8-0.7
Pavlov. Cond. magazine entry latency0.00.00.00.10.1-0.2
Pavlov. Cond. change in total contacts0.00.00.1-0.2-0.20.3
Pavlov. Cond. index score0.10.10.1-0.4-0.30.2
Pavlov. Cond. latency score0.00.00.1-0.3-0.20.1
Pavlov. Cond. lever contacts0.50.60.7-0.8-0.70.7
Pavlov. Cond. magazine entry number0.00.00.10.20.2-0.1
Pavlov. Cond. intertrial magazine entries2.12.62.6-1.6-1.61.6
Pavlov. Cond. lever-magazine prob. diff.0.40.50.6-0.8-0.70.6
Pavlov. Cond. response bias0.70.91.0-1.0-0.90.9
Pavlov. Cond. lever latency0.71.01.21.11.1-0.8
Pavlov. Cond. magazine entry latency0.00.00.1-0.00.0-0.3
Pavlov. Cond. change in total contacts0.10.10.2-0.5-0.40.0
Pavlov. Cond. index score0.30.50.7-0.8-0.70.4
Pavlov. Cond. latency score0.40.50.7-0.8-0.80.5
Pavlov. Cond. lever contacts0.50.60.8-0.9-0.80.7
Pavlov. Cond. magazine entry number0.10.10.2-0.1-0.20.5
Pavlov. Cond. intertrial magazine entries2.53.84.32.12.0-1.7
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.5-0.40.1
Pavlov. Cond. response bias0.60.91.1-1.1-1.00.7
Time in closed arm before self-admin0.40.50.50.70.7-0.7
Time in closed arm after self-admin1.11.21.41.01.0-1.2
Time in open arm before self-admin0.00.00.0-0.0-0.00.1
Time in open arm after self-admin0.40.50.6-0.8-0.70.6
Bone: periosteal estimation0.20.40.5-0.7-0.50.6
Bone: periosteal perimeter0.00.00.1-0.2-0.10.2
Bone: post-yield work1.92.83.2-1.6-1.71.8
Progressive ratio test 1 active lever presses3.54.35.0-2.0-2.02.2
Progressive ratio test 1 breakpoint3.64.45.2-2.0-2.02.3
Progressive ratio test 1 inactive lever presses5.27.58.2-2.7-2.72.9
Progressive ratio test 2 active lever presses3.03.54.3-1.7-1.82.1
Progressive ratio test 2 breakpoint2.83.24.0-1.6-1.72.0
Progressive ratio test 2 inactive lever presses2.94.75.2-2.1-2.12.3
Incentive Sensitization - Responses1.41.92.2-1.3-1.41.5
Incentive Sensitization - Breakpoint1.11.41.6-1.1-1.21.3
Sum of active levers in priming session hrs 5-60.20.20.40.20.4-0.6
Progressive ratio0.00.00.00.20.2-0.2
Food seeking constrained by brief footshock12.114.816.6-3.7-3.84.1
Seeking ratio, punishment vs. effort1.42.02.1-1.3-1.41.5
Retroperitoneal fat weight33.4142.4143.811.812.0-12.0
Reaction time number correct0.10.30.4-0.6-0.60.4
Reaction time mean minus median0.00.00.0-0.1-0.1-0.0
Reaction time mean minus median AUC0.00.10.10.30.3-0.3
Reaction time num false alarms1.41.92.11.31.5-1.5
Reaction time num false alarms AUC1.32.12.31.31.5-1.4
Reaction time trials correct on left0.10.30.4-0.6-0.60.4
Reaction time trials on left0.10.30.4-0.6-0.60.4
Reaction time mean0.10.20.40.60.4-0.1
Reaction time mean AUC0.10.10.30.50.3-0.0
Median of all reaction times0.10.20.40.60.40.0
Reaction time omissions0.10.10.20.20.3-0.4
Reaction time false alarm rate1.92.62.91.61.7-1.6
Reaction time premature initiation rate0.10.10.20.40.4-0.3
Reaction time premature initiations0.00.00.00.10.1-0.1
Std. dev. reaction times0.10.20.30.50.5-0.4
Reaction time trials completed0.10.30.4-0.6-0.60.4
Reaction time trials AUC0.20.40.5-0.7-0.60.4
Run reversals in cocaine runway, females0.30.30.4-0.5-0.60.7
Run reversals in cocaine runway, males0.70.70.8-0.8-0.90.9
Latency to leave start box in cocaine runway0.70.80.8-0.9-0.90.9
Latency to leave start box in cocaine runway, F0.10.10.1-0.4-0.40.3
Latency to leave start box in cocaine runway, M0.70.70.7-0.8-0.80.9
Std. dev. time between licks in bursts0.91.21.21.01.1-1.1
Total sessions with >9 infusions3.13.74.5-1.8-1.92.1
Short access day 1 total inactive lever presses6.28.28.7-2.9-2.82.8
Short access day 10 total inactive lever presses0.71.72.1-1.5-1.31.0
Short access day 1 total infusions5.16.77.0-2.6-2.62.6
Short access day 10 total infusions4.76.16.6-2.4-2.42.6
Short access total infusions3.34.24.8-2.0-2.02.2
Short access day 1 locomotion3.54.34.6-2.1-2.12.0
Short access day 10 total locomotion1.32.42.5-1.6-1.61.5
Short access total locomotion1.31.51.8-1.1-1.21.3
One hour access (0.3 mA shock)3.33.84.3-1.8-1.92.1
Compulsive drug intake2.42.82.91.71.7-1.7
One hour access (shock baseline)4.56.97.6-2.5-2.62.8
Social response proportion0.00.00.1-0.0-0.10.4
Social responses0.10.20.20.50.5-0.3
Social time0.00.10.10.0-0.10.4
Soleus weight3.39.810.8-3.3-3.22.9
Bone: stiffness0.00.10.10.20.2-0.3
Tibialis anterior weight1.34.65.9-2.4-2.21.7
Time to tail flick, vehicle, before self-admin0.10.10.10.30.2-0.3
Time to tail flick, vehicle, after self-admin4.05.35.72.22.2-2.4
Time to tail flick, test, before self-admin0.10.10.1-0.4-0.40.3
Time to tail flick, test, after self-admin0.91.01.0-0.9-1.01.0
Delta time to tail flick, vehicle, before/after SA1.31.21.51.01.1-1.2
Delta time to tail flick, test, before/after SA2.52.52.8-1.5-1.61.7
Tibia length1.12.93.92.01.8-1.3
Ambulatory time before self-admin0.10.10.2-0.3-0.40.4
Ambulatory time after self-admin0.60.70.80.90.8-0.7
Bone: tissue strength0.70.70.80.90.8-0.9
Total heroin consumption2.12.52.8-1.7-1.61.4
Bone: trabecular number2.33.84.2-2.1-2.01.9
Bone: trabecular spacing0.91.21.61.31.1-0.9
Bone: trabecular thickness0.30.40.5-0.7-0.60.6
Bone: trabecular tissue density0.30.50.5-0.7-0.70.6
Water consumed over 24 hours0.20.20.40.30.4-0.7
Number of responses in last shaping day1.31.41.5-1.2-1.21.2