Itgb7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Itgb7 0.24 0.11 2.0e-07 0.07 0.06 0.06 0.07 2.4e-08 8.4e-07 1.4e-07 5.6e-08
2 Adipose alternative polyA XM_006242383.5 0.04 0.03 4.7e-04 0.04 0.03 0.04 0.04 2.7e-05 2.6e-04 3.1e-05 2.4e-05
3 Adipose alternative polyA NM_013171.1 0.04 0.03 5.1e-04 0.04 0.03 0.04 0.04 2.3e-05 2.8e-04 3.8e-05 2.7e-05
4 Brain gene expression Itgb7 0.16 0.07 8.8e-13 0.13 0.14 0.14 0.14 3.5e-12 6.5e-13 5.2e-13 3.3e-13

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.64.45.12.3-2.22.2-1.7
Area under the delay curve0.60.70.90.9-0.90.7-0.8
BMI with tail3.311.513.03.5-3.63.5-2.9
BMI without tail0.92.93.41.6-1.71.6-1.8
Body weight1.04.65.12.1-2.22.2-2.0
Weight adjusted by age0.71.11.3-1.01.1-1.00.9
Bone surface4.58.18.83.0-2.93.0-2.5
Bone volume4.07.27.92.8-2.82.8-2.3
Breakpoint value in progressive ratio session2.42.93.71.9-1.71.7-1.5
Number of licking bursts0.50.81.1-1.01.0-1.00.4
Context. condit. distance diff. score0.20.30.40.6-0.60.6-0.3
Locomotion velocity, session 19.09.710.9-3.33.2-3.22.7
Locomotion distance, session 17.08.910.0-3.23.1-3.12.5
Locomotion velocity, session 23.33.84.4-2.12.0-2.01.7
Locomotion distance, session 24.86.77.2-2.72.6-2.62.5
Locomotion velocity, session 32.93.33.7-1.91.9-1.81.6
Locomotion distance, session 31.92.12.2-1.51.5-1.41.4
Stereotopy head waving bouts, day 31.31.51.91.1-1.21.1-1.4
Stereotopy head waving duration, day 30.40.40.60.6-0.70.6-0.8
Locomotion velocity, session 70.80.91.0-1.01.0-1.00.9
Locomotion distance, session 74.25.36.2-2.42.5-2.41.9
Stereotopy head waving bouts, day 71.31.42.01.1-1.21.1-1.4
Stereotopy head waving duration, day 71.72.12.71.4-1.41.3-1.6
Locomotion velocity, session 80.10.10.1-0.30.3-0.30.2
Locomotion distance, session 82.94.24.3-2.12.1-2.02.1
Degree of sensitization distance0.10.10.1-0.30.4-0.30.2
Degree of sensitization stereotypy0.90.91.40.9-0.90.8-1.2
Conditioned locomotion0.60.71.4-0.80.6-0.71.2
Cocaine response after cond. corrected2.02.42.7-1.61.5-1.71.4
Cocaine response after cond. not corrected1.31.51.6-1.21.2-1.31.3
Cocaine response before conditioning0.10.20.30.5-0.50.5-0.1
Saline control response0.10.10.40.00.00.00.6
Bone: connectivity density0.71.11.51.2-1.21.2-0.5
Bone: cortical apparent density2.12.93.2-1.71.8-1.81.4
Bone: cortical area2.33.64.32.0-2.02.1-1.4
Bone: cortical porosity0.00.00.1-0.0-0.00.00.4
Bone: cortical porosity0.10.10.3-0.10.1-0.00.5
Bone: cortical thickness0.20.30.40.6-0.50.6-0.3
Bone: cortical thickness1.11.22.5-0.90.9-0.91.6
Bone: cortical tissue density2.33.13.5-1.81.9-1.91.5
Condit. Reinf. active minus inactive responses0.70.81.1-0.80.8-0.71.1
Condit. Reinf. active-inactive response ratio0.30.30.6-0.40.4-0.40.8
Condit. Reinf. active responses1.72.13.1-1.41.4-1.31.8
Condit. Reinf. inactive responses2.22.73.2-1.61.5-1.71.8
Incentive salience index mean0.30.30.6-0.50.5-0.40.8
Condit. Reinf. lever presses0.00.10.1-0.20.3-0.20.2
Condit. Reinf. active minus inactive responses0.20.30.40.6-0.50.5-0.6
Condit. Reinf. active-inactive response ratio0.20.30.30.5-0.50.6-0.6
Condit. Reinf. active responses0.10.20.40.4-0.30.3-0.6
Condit. Reinf. inactive responses0.20.30.4-0.60.6-0.60.3
Condit. Reinf. lever presses0.10.10.4-0.20.2-0.30.6
Condit. Reinf. lever reinforcers received0.00.00.00.00.0-0.1-0.1
Conditioned reinforcement - actives0.71.11.5-1.21.2-1.20.5
Conditioned reinforcement - inactives0.81.21.9-1.00.9-0.91.4
Conditioned locomotion0.10.10.2-0.40.4-0.4-0.1
Patch foraging indifference point 0 sec2.13.94.5-2.12.1-2.11.7
Patch foraging indifference point AUC1.82.63.0-1.71.7-1.71.2
Delay disc. indifference point, 0s delay0.00.00.0-0.2-0.0-0.2-0.0
Delay disc. indifference point, 16s delay0.60.60.80.9-0.90.9-0.4
Delay disc. indifference point, 2s delay1.31.43.21.0-0.90.8-1.8
Delay disc. indifference point, 24s delay0.20.30.50.4-0.30.7-0.5
Delay disc. indifference point, 4s delay1.11.21.41.1-1.21.0-1.0
Delay disc. indifference point, 8s delay0.30.30.50.7-0.60.5-0.5
Indifference point function ln k3.05.25.72.4-2.42.4-2.0
Indifference point function log k3.05.25.72.4-2.42.4-2.0
Patch foraging total patch changes 0 sec2.54.75.3-2.32.2-2.31.8
Patch foraging total patch changes 12 sec4.76.16.8-2.62.5-2.62.2
Patch foraging total patch changes 18 sec5.38.08.9-3.02.9-3.02.4
Patch foraging total patch changes 24 sec1.62.83.4-1.81.8-1.81.1
Patch foraging total patch changes 6 sec5.38.010.4-3.23.1-3.11.5
Patch foraging time to switch 0 sec0.10.20.3-0.50.5-0.50.1
Patch foraging water rate 0 sec0.10.30.40.5-0.70.6-0.2
Patch foraging water rate 12 sec0.10.30.40.5-0.60.6-0.1
Patch foraging water rate 18 sec0.00.00.00.0-0.00.00.1
Patch foraging water rate 24 sec0.40.60.70.7-0.80.8-0.7
Patch foraging water rate 6 sec2.53.74.72.1-2.22.1-1.0
Seeking ratio, delayed vs. immediate footshock0.10.10.10.2-0.30.30.3
Distance traveled before self-admin0.10.10.20.3-0.20.5-0.3
Distance traveled after self-admin0.80.91.41.1-1.01.2-0.2
Extensor digitorum longus weight4.919.330.14.0-4.04.0-5.5
Bone: elastic displacement1.61.82.2-1.51.4-1.41.1
Bone: elastic work0.40.50.7-0.80.7-0.70.5
Bone: endosteal estimation4.29.110.13.0-3.13.2-2.7
Bone: endosteal perimeter4.28.910.23.1-3.13.2-2.5
Epididymis fat weight0.10.40.70.4-0.60.70.8
Delta time in closed arm before/after self-admin1.21.11.81.3-1.01.1-0.7
Delta time in open arm before/after self-admin1.71.62.4-1.31.3-1.01.5
Diff in mean of infusions in LGA sessions0.20.20.40.1-0.60.6-0.2
Delay discount exponential model param1.01.11.3-1.11.0-0.91.1
Extinction: sum of active levers before priming3.13.44.21.8-1.91.7-2.0
Active lever presses in extinction session 60.80.81.01.0-1.00.8-0.7
Bone: final force4.06.47.12.6-2.62.7-2.2
Bone: final moment4.97.88.42.8-2.92.9-2.6
Food consumed during 24 hour testing period0.40.60.80.8-0.90.9-0.2
Glucose0.71.11.3-1.11.1-1.10.8
Heart weight1.31.92.71.6-1.61.6-0.2
Delay discount hyperbolic model param1.01.11.3-1.11.0-0.91.2
Intermittent access intake day 1-15 change0.00.10.10.4-0.10.3-0.1
Intermittent access intake escalation0.00.00.10.3-0.10.2-0.1
Intermittent access intake escalation 20.00.00.10.3-0.10.20.1
Intermitt. access day 1 inactive lever presses0.10.50.60.8-0.70.8-0.5
Intermitt. access day 15 inactive lever presses0.10.20.40.4-0.40.7-0.1
Intermitt. access escalation Index0.20.30.9-0.20.1-0.3-0.9
Intermittent access day 1 total infusions0.60.91.0-1.00.9-0.91.0
Intermittent access day 15 total infusions1.31.92.4-1.51.5-1.40.9
Intermittent access terminal intake (last 3 days)0.91.11.5-1.11.2-1.10.7
Intermittent access total infusions0.81.01.3-1.11.1-1.10.6
Intermittent access day 1 locomotion0.30.30.5-0.70.6-0.60.3
Intermittent access day 15 total locomotion0.20.40.50.7-0.70.7-0.2
Intermittent access total locomotion0.00.00.0-0.00.1-0.1-0.0
Intermittent access standard deviation0.40.81.3-0.60.9-0.91.1
Left kidney weight0.10.30.50.5-0.70.70.1
Right kidney weight0.31.51.81.3-1.31.3-0.9
Cocaine induced anxiety0.81.12.40.9-0.70.7-1.6
Post-drug Anxiety2.62.73.41.8-1.71.6-1.5
Baseline Anxiety0.40.40.60.6-0.70.50.8
Tail length0.52.02.3-1.51.5-1.51.1
Length with tail0.00.10.1-0.40.3-0.40.3
Length without tail0.62.02.31.4-1.51.5-1.1
Times rat made contact with spout0.50.60.70.8-0.80.9-0.6
Lifetime Intake0.50.60.8-0.80.8-0.90.5
Liver weight, left7.212.012.73.5-3.63.5-3.2
Liver weight, right0.71.31.71.3-1.11.1-0.9
Locomotor activity0.10.10.2-0.30.4-0.40.0
Locomotor testing distance0.40.71.0-0.81.0-1.00.2
Locomotor testing rearing0.20.30.6-0.40.7-0.8-0.0
Locomotion in novel chamber4.25.48.42.2-2.02.1-2.9
Locomotion in novel chamber post-restriction0.00.10.30.10.10.1-0.5
Fecal boli incidents, locomotor time 11.72.42.8-1.31.7-1.61.6
Change in fecal boli incidents, locomotor task0.40.40.50.4-0.60.6-0.7
Time >=10cm from walls, locomotor time 10.10.10.20.0-0.10.00.5
Bouts of movement, locomotor time 11.41.62.4-1.21.1-1.11.5
Total resting periods, locomotor time 12.52.83.7-1.71.5-1.51.9
Rest time, locomotor task time 11.21.51.9-1.41.3-1.10.9
Distance moved, locomotor task time 10.20.30.50.5-0.60.5-0.7
Vertical activity count, locomotor time 10.30.70.80.9-0.80.8-0.7
Time >=10cm from walls, locomotor time 20.00.00.1-0.2-0.0-0.00.1
Bouts of movement, locomotor time 20.61.01.61.0-0.80.9-1.3
Total resting periods, locomotor time 20.50.91.40.9-0.80.9-1.2
Rest time, locomotor task time 21.21.51.8-1.21.4-1.31.1
Distance moved, locomotor task time 20.10.10.10.1-0.40.4-0.1
Vertical activity count, locomotor time 20.10.20.50.3-0.30.4-0.7
Light reinforcement 11.64.04.2-2.01.9-2.02.0
Light reinforcement 22.64.14.4-2.12.1-2.11.8
Bone: marrow area4.18.99.83.0-3.13.1-2.7
Bone: maximum diameter1.63.03.41.8-1.81.9-1.4
Bone: maximum force2.74.95.32.1-2.22.3-2.2
Bone: maximum moment3.46.06.32.4-2.52.5-2.5
Mean time between licks in bursts0.92.23.0-1.71.7-1.70.5
Mean num. licks in bursts1.01.62.01.4-1.41.4-0.7
Cd content in liver0.20.20.3-0.50.5-0.50.3
Co content in liver0.20.20.50.3-0.30.3-0.7
Cu content in liver9.711.512.43.5-3.53.5-3.0
Fe content in liver0.10.10.2-0.20.2-0.2-0.4
K content in liver0.50.50.80.6-0.60.6-0.9
Mg content in liver0.40.40.70.6-0.60.6-0.8
Mn content in liver0.40.50.6-0.80.8-0.80.2
Na content in liver1.51.61.91.3-1.21.2-1.4
Rb content in liver1.31.51.71.2-1.21.1-1.3
Se content in liver0.40.40.5-0.70.6-0.60.7
Sr content in liver0.00.00.0-0.10.1-0.10.1
Zn content in liver0.20.20.9-0.10.1-0.10.9
Bone: minimum diameter3.97.08.32.7-2.82.9-2.1
Time in familiar zone, hab. session 10.00.00.00.0-0.00.00.2
Time in novel zone, hab. session 10.00.00.10.1-0.10.1-0.3
Total zone transitions, hab. session 11.31.92.1-1.41.5-1.31.3
Total locomotion distance, hab. session 12.33.34.7-1.71.7-1.62.2
Locomotion velocity, hab. session 11.92.73.2-1.61.6-1.51.8
Time in familiar zone, hab. session 21.41.52.21.2-1.11.1-1.5
Time in novel zone, hab. session 20.50.50.5-0.70.7-0.70.7
Total zone transitions, hab. session 21.52.02.1-1.41.4-1.31.5
Total locomotion distance, hab. session 21.82.34.0-1.41.3-1.22.0
Locomotion velocity, hab. session 21.62.13.8-1.31.2-1.22.0
Novel to familiar place preference ratio0.20.20.30.5-0.50.5-0.1
Novelty place preference0.10.10.10.3-0.30.4-0.1
Time in novel zone, NPP test0.10.20.20.4-0.40.5-0.2
Total zone transitions, NPP test6.08.79.1-3.03.0-2.92.9
Total locomotion distance, NPP test6.58.811.1-2.92.8-2.83.3
Locomotion velocity, NPP test6.38.911.5-2.92.8-2.73.4
Intraocular pressure0.40.60.9-0.81.0-0.90.4
Delta distance traveled before/after self-admin0.50.60.60.8-0.80.80.7
Delta ambulatory time before/after self-admin0.91.21.71.3-1.21.20.4
Parametrial fat weight0.30.70.9-0.80.7-0.80.9
Pavlov. Cond. lever latency0.20.20.4-0.40.3-0.40.6
Pavlov. Cond. magazine entry latency0.60.72.10.5-0.40.5-1.5
Pavlov. Cond. change in total contacts1.61.72.51.2-1.21.2-1.6
Pavlov. Cond. index score1.21.53.11.0-0.91.0-1.8
Pavlov. Cond. latency score1.31.62.91.1-1.01.1-1.7
Pavlov. Cond. lever contacts0.20.30.80.3-0.20.3-0.9
Pavlov. Cond. magazine entry number0.30.41.3-0.40.3-0.31.1
Pavlov. Cond. intertrial magazine entries2.42.93.7-1.61.6-1.61.9
Pavlov. Cond. lever-magazine prob. diff.1.11.33.00.9-0.80.9-1.7
Pavlov. Cond. response bias0.20.20.90.2-0.10.1-0.9
Pavlov. Cond. lever latency0.91.22.31.0-0.90.9-1.5
Pavlov. Cond. magazine entry latency2.63.23.9-1.71.7-1.72.0
Pavlov. Cond. change in total contacts0.00.10.10.3-0.30.2-0.0
Pavlov. Cond. index score1.82.53.6-1.51.4-1.51.9
Pavlov. Cond. latency score2.02.73.8-1.51.5-1.61.9
Pavlov. Cond. lever contacts1.11.63.1-1.11.0-1.01.8
Pavlov. Cond. magazine entry number0.91.11.80.9-0.91.0-1.3
Pavlov. Cond. intertrial magazine entries0.00.00.0-0.00.10.00.1
Pavlov. Cond. lever-magazine prob. diff.1.31.82.7-1.21.2-1.31.6
Pavlov. Cond. response bias0.71.01.9-0.90.8-0.91.4
Time in closed arm before self-admin0.10.20.3-0.50.4-0.40.1
Time in closed arm after self-admin0.30.40.60.5-0.50.5-0.8
Time in open arm before self-admin0.80.91.80.9-0.70.7-1.3
Time in open arm after self-admin0.10.10.2-0.10.20.00.5
Bone: periosteal estimation5.511.613.13.5-3.63.6-2.8
Bone: periosteal perimeter4.78.29.22.9-3.03.0-2.5
Bone: post-yield work1.52.22.31.4-1.51.5-1.5
Progressive ratio test 1 active lever presses4.04.95.9-2.32.4-2.41.6
Progressive ratio test 1 breakpoint3.84.75.5-2.32.3-2.31.6
Progressive ratio test 1 inactive lever presses0.30.40.4-0.70.6-0.50.6
Progressive ratio test 2 active lever presses0.00.10.10.3-0.10.2-0.3
Progressive ratio test 2 breakpoint0.10.10.10.3-0.10.2-0.3
Progressive ratio test 2 inactive lever presses0.10.20.40.6-0.40.6-0.3
Incentive Sensitization - Responses1.52.12.51.6-1.41.5-1.3
Incentive Sensitization - Breakpoint1.82.42.71.7-1.51.6-1.4
Sum of active levers in priming session hrs 5-60.00.00.1-0.10.1-0.30.1
Progressive ratio0.00.10.1-0.40.3-0.10.1
Food seeking constrained by brief footshock0.10.10.50.1-0.0-0.20.7
Seeking ratio, punishment vs. effort0.10.10.20.4-0.40.00.3
Retroperitoneal fat weight0.83.54.7-1.81.7-1.82.2
Reaction time number correct0.10.10.40.0-0.20.3-0.6
Reaction time mean minus median0.20.40.4-0.60.6-0.60.6
Reaction time mean minus median AUC0.10.40.5-0.70.7-0.60.5
Reaction time num false alarms3.65.06.3-2.02.2-2.22.5
Reaction time num false alarms AUC3.65.66.7-2.22.4-2.42.6
Reaction time trials correct on left0.10.10.40.0-0.20.3-0.6
Reaction time trials on left0.00.10.3-0.0-0.20.2-0.5
Reaction time mean0.50.71.21.1-1.00.9-0.2
Reaction time mean AUC0.61.01.41.2-1.11.0-0.5
Median of all reaction times1.21.72.61.6-1.41.4-0.5
Reaction time omissions0.71.03.4-0.40.4-0.31.8
Reaction time false alarm rate2.63.75.1-1.61.9-1.92.3
Reaction time premature initiation rate0.10.10.30.3-0.20.10.6
Reaction time premature initiations0.10.10.20.4-0.40.30.1
Std. dev. reaction times0.00.10.2-0.10.2-0.20.5
Reaction time trials completed0.00.10.3-0.0-0.20.2-0.5
Reaction time trials AUC0.10.20.50.1-0.30.3-0.7
Run reversals in cocaine runway, females0.30.30.60.7-0.80.5-0.2
Run reversals in cocaine runway, males1.01.01.9-1.41.1-0.90.2
Latency to leave start box in cocaine runway0.10.10.20.4-0.30.3-0.4
Latency to leave start box in cocaine runway, F0.30.30.4-0.50.6-0.60.4
Latency to leave start box in cocaine runway, M2.12.02.41.5-1.41.4-1.2
Std. dev. time between licks in bursts1.52.12.6-1.61.6-1.60.9
Total sessions with >9 infusions0.20.20.3-0.20.4-0.60.5
Short access day 1 total inactive lever presses0.00.00.0-0.10.2-0.2-0.0
Short access day 10 total inactive lever presses0.61.52.21.5-1.31.3-0.6
Short access day 1 total infusions0.10.20.30.6-0.40.30.0
Short access day 10 total infusions0.70.91.1-1.01.0-1.00.8
Short access total infusions0.10.20.3-0.40.5-0.60.3
Short access day 1 locomotion0.00.00.10.3-0.20.0-0.1
Short access day 10 total locomotion0.10.10.20.5-0.40.20.0
Short access total locomotion0.20.30.5-0.40.5-0.70.4
One hour access (0.3 mA shock)1.82.12.51.4-1.41.4-1.6
Compulsive drug intake2.22.63.21.6-1.81.8-1.2
One hour access (shock baseline)0.20.30.90.4-0.40.4-0.9
Social response proportion0.50.61.4-0.40.7-0.61.2
Social responses1.82.42.6-1.41.6-1.61.6
Social time0.40.51.0-0.50.7-0.51.0
Soleus weight0.51.52.41.1-1.11.1-1.5
Bone: stiffness4.77.78.42.8-2.92.9-2.5
Tibialis anterior weight3.210.818.53.0-2.82.8-4.3
Time to tail flick, vehicle, before self-admin0.00.00.00.2-0.0-0.1-0.1
Time to tail flick, vehicle, after self-admin0.50.60.80.7-0.80.9-0.7
Time to tail flick, test, before self-admin1.51.61.8-1.31.3-1.21.1
Time to tail flick, test, after self-admin1.81.92.51.6-1.41.4-1.0
Delta time to tail flick, vehicle, before/after SA0.60.60.90.6-0.91.0-0.6
Delta time to tail flick, test, before/after SA3.13.24.22.0-2.01.8-1.1
Tibia length1.33.74.92.2-2.02.1-1.3
Ambulatory time before self-admin0.00.00.0-0.20.10.1-0.1
Ambulatory time after self-admin1.61.82.51.6-1.51.6-0.5
Bone: tissue strength1.11.22.10.8-0.91.0-1.4
Total heroin consumption3.44.05.02.2-2.02.0-1.8
Bone: trabecular number0.81.31.81.3-1.31.2-0.6
Bone: trabecular spacing0.00.00.0-0.00.1-0.1-0.2
Bone: trabecular thickness0.00.00.1-0.1-0.00.00.3
Bone: trabecular tissue density0.40.60.7-0.60.8-0.80.7
Water consumed over 24 hours0.00.00.20.1-0.10.1-0.4
Number of responses in last shaping day2.32.52.9-1.41.6-1.61.7