Itgb7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Itgb7 0.24 0.11 2.0e-07 0.07 0.06 0.06 0.07 2.4e-08 8.4e-07 1.4e-07 5.8e-08
2 Adipose alternative polyA NM_013171.1 0.04 0.03 5.1e-04 0.04 0.03 0.04 0.04 2.3e-05 2.8e-04 3.8e-05 2.7e-05
3 Adipose alternative polyA XM_006242383.5 0.04 0.03 4.7e-04 0.04 0.03 0.04 0.04 2.7e-05 2.6e-04 3.1e-05 2.7e-05
4 Brain gene expression Itgb7 0.16 0.07 8.8e-13 0.13 0.14 0.14 0.14 3.5e-12 6.5e-13 5.2e-13 3.4e-13

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.44.45.1-2.3-2.22.2-1.7
Area under the delay curve0.40.70.9-0.9-0.70.7-0.8
BMI with tail3.311.412.5-3.5-3.53.5-2.9
BMI without tail0.52.83.4-1.6-1.61.6-1.8
Body weight1.04.54.8-2.1-2.22.2-2.0
Weight adjusted by age0.31.01.11.01.0-1.00.9
Bone surface4.18.18.8-3.0-3.03.0-2.5
Bone volume3.67.37.9-2.8-2.82.8-2.3
Breakpoint value in progressive ratio session1.62.93.7-1.9-1.71.7-1.5
Number of licking bursts0.30.81.01.01.0-1.00.4
Context. condit. distance diff. score0.20.30.4-0.6-0.60.6-0.3
Locomotion velocity, session 18.69.710.93.33.2-3.22.7
Locomotion distance, session 16.98.810.03.23.1-3.12.4
Locomotion velocity, session 23.23.84.42.12.0-2.01.7
Locomotion distance, session 24.76.77.22.72.6-2.62.5
Locomotion velocity, session 32.83.23.71.91.8-1.81.6
Locomotion distance, session 31.82.12.21.51.4-1.41.4
Stereotopy head waving bouts, day 31.21.41.8-1.1-1.11.1-1.4
Stereotopy head waving duration, day 30.30.40.6-0.6-0.60.6-0.8
Locomotion velocity, session 70.80.90.91.01.0-1.00.9
Locomotion distance, session 74.15.25.82.42.4-2.41.9
Stereotopy head waving bouts, day 71.21.42.0-1.1-1.11.1-1.4
Stereotopy head waving duration, day 71.62.02.7-1.4-1.31.3-1.6
Locomotion velocity, session 80.10.10.10.30.3-0.30.2
Locomotion distance, session 82.84.14.32.12.0-2.02.1
Degree of sensitization distance0.10.10.10.30.3-0.30.2
Degree of sensitization stereotypy0.80.91.4-0.9-0.80.8-1.2
Conditioned locomotion0.70.81.40.80.7-0.71.2
Cocaine response after cond. corrected1.62.52.71.61.7-1.71.4
Cocaine response after cond. not corrected1.11.61.61.21.3-1.31.3
Cocaine response before conditioning0.20.20.3-0.5-0.50.5-0.1
Saline control response0.10.10.4-0.0-0.00.00.6
Bone: connectivity density0.71.11.5-1.2-1.21.2-0.5
Bone: cortical apparent density1.82.93.21.71.8-1.81.5
Bone: cortical area2.23.64.3-2.0-2.12.1-1.4
Bone: cortical porosity0.00.00.10.0-0.00.00.4
Bone: cortical porosity0.10.10.30.10.0-0.00.5
Bone: cortical thickness0.20.30.4-0.6-0.60.6-0.3
Bone: cortical thickness1.01.32.50.90.9-0.91.6
Bone: cortical tissue density2.03.23.51.81.9-1.91.5
Condit. Reinf. active minus inactive responses0.60.71.10.80.7-0.71.1
Condit. Reinf. active-inactive response ratio0.30.30.60.40.4-0.40.8
Condit. Reinf. active responses1.62.13.11.41.3-1.31.8
Condit. Reinf. inactive responses2.22.83.21.61.7-1.71.8
Incentive salience index mean0.20.30.60.50.4-0.40.8
Condit. Reinf. lever presses0.00.00.10.20.2-0.20.2
Condit. Reinf. active minus inactive responses0.20.30.4-0.6-0.50.5-0.6
Condit. Reinf. active-inactive response ratio0.20.30.3-0.5-0.60.6-0.6
Condit. Reinf. active responses0.10.20.4-0.4-0.30.3-0.6
Condit. Reinf. inactive responses0.20.30.40.60.6-0.60.3
Condit. Reinf. lever presses0.10.10.40.20.3-0.30.6
Condit. Reinf. lever reinforcers received0.00.00.0-0.00.1-0.1-0.1
Conditioned reinforcement - actives0.31.11.51.21.2-1.20.5
Conditioned reinforcement - inactives0.41.11.91.00.9-0.91.4
Conditioned locomotion0.10.10.20.40.4-0.4-0.1
Patch foraging indifference point 0 sec1.43.94.52.12.1-2.11.6
Patch foraging indifference point AUC1.12.63.01.71.7-1.71.2
Delay disc. indifference point, 0s delay0.00.00.00.20.2-0.2-0.0
Delay disc. indifference point, 16s delay0.40.60.8-0.9-0.90.9-0.4
Delay disc. indifference point, 2s delay1.21.43.2-1.0-0.80.8-1.8
Delay disc. indifference point, 24s delay0.20.40.5-0.4-0.70.7-0.5
Delay disc. indifference point, 4s delay1.01.11.2-1.1-1.01.0-1.0
Delay disc. indifference point, 8s delay0.20.30.5-0.7-0.50.5-0.5
Indifference point function ln k1.75.25.7-2.4-2.42.4-2.0
Indifference point function log k1.75.25.7-2.4-2.42.4-2.0
Patch foraging total patch changes 0 sec1.64.75.32.32.3-2.31.8
Patch foraging total patch changes 12 sec4.76.36.82.62.6-2.62.2
Patch foraging total patch changes 18 sec3.58.18.93.03.0-3.02.4
Patch foraging total patch changes 24 sec0.82.83.41.81.8-1.81.1
Patch foraging total patch changes 6 sec4.88.010.43.23.1-3.11.5
Patch foraging time to switch 0 sec0.00.20.30.50.5-0.50.1
Patch foraging water rate 0 sec0.10.30.4-0.5-0.60.6-0.2
Patch foraging water rate 12 sec0.10.30.4-0.5-0.60.6-0.1
Patch foraging water rate 18 sec0.00.00.0-0.0-0.00.00.1
Patch foraging water rate 24 sec0.40.60.6-0.7-0.80.8-0.7
Patch foraging water rate 6 sec2.53.74.6-2.1-2.12.1-1.0
Seeking ratio, delayed vs. immediate footshock0.10.10.1-0.2-0.30.30.3
Distance traveled before self-admin0.10.20.2-0.3-0.50.5-0.3
Distance traveled after self-admin0.61.01.4-1.1-1.21.2-0.2
Extensor digitorum longus weight4.819.330.1-4.0-4.04.0-5.5
Bone: elastic displacement1.51.82.21.51.4-1.41.1
Bone: elastic work0.40.50.70.80.7-0.70.5
Bone: endosteal estimation3.89.210.1-3.0-3.23.2-2.7
Bone: endosteal perimeter3.79.110.2-3.1-3.23.2-2.5
Epididymis fat weight0.10.40.7-0.4-0.70.70.8
Delta time in closed arm before/after self-admin1.21.21.8-1.3-1.11.1-0.7
Delta time in open arm before/after self-admin1.21.52.41.31.0-1.01.5
Diff in mean of infusions in LGA sessions0.10.20.4-0.1-0.60.6-0.2
Delay discount exponential model param0.81.01.31.10.9-0.91.1
Extinction: sum of active levers before priming2.13.24.2-1.8-1.71.7-2.1
Active lever presses in extinction session 60.70.71.0-1.0-0.80.8-0.7
Bone: final force3.96.47.1-2.6-2.72.7-2.2
Bone: final moment4.97.98.4-2.8-2.92.9-2.6
Food consumed during 24 hour testing period0.30.60.8-0.8-0.90.9-0.2
Glucose0.71.11.31.11.1-1.10.8
Heart weight1.21.92.6-1.6-1.61.6-0.2
Delay discount hyperbolic model param0.81.11.31.10.9-0.91.2
Intermittent access intake day 1-15 change0.00.10.1-0.4-0.30.3-0.1
Intermittent access intake escalation0.00.10.1-0.3-0.20.2-0.1
Intermittent access intake escalation 20.00.00.1-0.3-0.20.20.1
Intermitt. access day 1 inactive lever presses0.00.50.6-0.8-0.80.8-0.5
Intermitt. access day 15 inactive lever presses0.10.30.4-0.4-0.70.7-0.1
Intermitt. access escalation Index0.10.30.90.20.3-0.3-0.9
Intermittent access day 1 total infusions0.30.91.01.00.9-0.91.0
Intermittent access day 15 total infusions0.71.82.31.51.4-1.40.9
Intermittent access terminal intake (last 3 days)0.61.01.31.11.1-1.10.7
Intermittent access total infusions0.80.91.11.11.1-1.10.6
Intermittent access day 1 locomotion0.20.30.50.70.6-0.60.3
Intermittent access day 15 total locomotion0.10.40.5-0.7-0.70.7-0.2
Intermittent access total locomotion0.00.00.00.00.1-0.1-0.0
Intermittent access standard deviation0.20.81.30.60.9-0.91.1
Left kidney weight0.00.30.5-0.5-0.70.70.1
Right kidney weight0.21.51.8-1.3-1.31.3-0.9
Cocaine induced anxiety0.41.12.5-0.9-0.70.7-1.6
Post-drug Anxiety2.42.73.4-1.8-1.61.6-1.5
Baseline Anxiety0.20.40.6-0.6-0.50.50.8
Tail length0.42.02.31.51.5-1.51.1
Length with tail0.00.10.10.40.4-0.40.3
Length without tail0.42.02.3-1.4-1.51.5-1.1
Times rat made contact with spout0.60.60.7-0.8-0.90.9-0.6
Lifetime Intake0.50.60.80.80.9-0.90.5
Liver weight, left6.911.912.5-3.5-3.53.5-3.2
Liver weight, right0.71.31.7-1.3-1.11.1-0.9
Locomotor activity0.10.10.20.30.4-0.40.0
Locomotor testing distance0.30.71.00.81.0-1.00.2
Locomotor testing rearing0.10.30.60.40.8-0.8-0.0
Locomotion in novel chamber4.25.68.4-2.2-2.12.1-2.9
Locomotion in novel chamber post-restriction0.00.10.3-0.1-0.10.1-0.5
Fecal boli incidents, locomotor time 10.92.42.71.31.6-1.61.6
Change in fecal boli incidents, locomotor task0.30.40.5-0.4-0.60.6-0.7
Time >=10cm from walls, locomotor time 10.00.10.2-0.0-0.00.00.5
Bouts of movement, locomotor time 11.21.62.41.21.1-1.11.5
Total resting periods, locomotor time 12.42.83.71.71.5-1.51.9
Rest time, locomotor task time 10.81.41.91.41.1-1.10.9
Distance moved, locomotor task time 10.10.30.5-0.5-0.50.5-0.7
Vertical activity count, locomotor time 10.10.70.8-0.9-0.80.8-0.7
Time >=10cm from walls, locomotor time 20.00.00.10.20.0-0.00.1
Bouts of movement, locomotor time 20.31.11.6-1.0-0.90.9-1.3
Total resting periods, locomotor time 20.20.91.4-0.9-0.90.9-1.2
Rest time, locomotor task time 20.91.51.81.21.3-1.31.1
Distance moved, locomotor task time 20.10.10.1-0.1-0.40.4-0.1
Vertical activity count, locomotor time 20.10.20.4-0.3-0.40.4-0.7
Light reinforcement 10.94.04.22.02.0-2.02.0
Light reinforcement 21.84.14.42.12.1-2.11.8
Bone: marrow area3.79.09.8-3.0-3.13.1-2.7
Bone: maximum diameter1.53.03.4-1.8-1.91.9-1.4
Bone: maximum force2.54.95.3-2.1-2.32.3-2.2
Bone: maximum moment3.26.16.3-2.4-2.52.5-2.5
Mean time between licks in bursts0.42.23.01.71.7-1.70.5
Mean num. licks in bursts0.61.62.0-1.4-1.41.4-0.7
Cd content in liver0.20.20.30.50.5-0.50.3
Co content in liver0.20.20.5-0.3-0.30.3-0.7
Cu content in liver9.711.512.4-3.5-3.53.5-3.0
Fe content in liver0.10.10.20.20.2-0.2-0.4
K content in liver0.50.50.8-0.6-0.60.6-0.9
Mg content in liver0.40.40.7-0.6-0.60.6-0.8
Mn content in liver0.40.50.60.80.8-0.80.2
Na content in liver1.41.61.9-1.3-1.21.2-1.4
Rb content in liver1.21.41.7-1.2-1.11.1-1.3
Se content in liver0.40.40.50.70.6-0.60.7
Sr content in liver0.00.00.00.10.1-0.10.1
Zn content in liver0.20.20.90.10.1-0.10.9
Bone: minimum diameter3.77.18.3-2.7-2.92.9-2.1
Time in familiar zone, hab. session 10.00.00.0-0.0-0.00.00.2
Time in novel zone, hab. session 10.00.00.1-0.1-0.10.1-0.3
Total zone transitions, hab. session 11.31.81.91.41.3-1.31.3
Total locomotion distance, hab. session 12.33.24.71.71.6-1.62.2
Locomotion velocity, hab. session 11.92.63.21.61.5-1.51.8
Time in familiar zone, hab. session 21.31.52.2-1.2-1.11.1-1.5
Time in novel zone, hab. session 20.40.50.50.70.7-0.70.7
Total zone transitions, hab. session 21.51.92.11.41.3-1.31.5
Total locomotion distance, hab. session 21.72.34.01.41.2-1.22.0
Locomotion velocity, hab. session 21.52.13.81.31.2-1.21.9
Novel to familiar place preference ratio0.10.20.3-0.5-0.50.5-0.1
Novelty place preference0.10.10.1-0.3-0.40.4-0.1
Time in novel zone, NPP test0.10.20.2-0.4-0.50.5-0.2
Total zone transitions, NPP test5.88.69.13.02.9-2.92.8
Total locomotion distance, NPP test6.28.711.12.92.8-2.83.3
Locomotion velocity, NPP test6.18.811.52.92.7-2.73.4
Intraocular pressure0.40.60.80.80.9-0.90.4
Delta distance traveled before/after self-admin0.50.60.6-0.8-0.80.80.7
Delta ambulatory time before/after self-admin0.71.11.7-1.3-1.21.20.4
Parametrial fat weight0.30.70.90.80.8-0.80.9
Pavlov. Cond. lever latency0.20.20.40.40.4-0.40.6
Pavlov. Cond. magazine entry latency0.60.72.1-0.5-0.50.5-1.5
Pavlov. Cond. change in total contacts1.61.72.5-1.2-1.21.2-1.6
Pavlov. Cond. index score1.21.53.1-1.0-1.01.0-1.8
Pavlov. Cond. latency score1.31.62.9-1.1-1.11.1-1.7
Pavlov. Cond. lever contacts0.20.30.8-0.3-0.30.3-0.9
Pavlov. Cond. magazine entry number0.30.41.30.40.3-0.31.1
Pavlov. Cond. intertrial magazine entries2.42.93.71.61.6-1.61.9
Pavlov. Cond. lever-magazine prob. diff.1.11.33.0-0.9-0.90.9-1.7
Pavlov. Cond. response bias0.20.20.9-0.2-0.10.1-0.9
Pavlov. Cond. lever latency0.91.22.3-1.0-0.90.9-1.5
Pavlov. Cond. magazine entry latency2.33.23.91.71.7-1.72.0
Pavlov. Cond. change in total contacts0.00.00.1-0.3-0.20.2-0.0
Pavlov. Cond. index score1.62.53.61.51.5-1.51.9
Pavlov. Cond. latency score1.72.83.81.51.6-1.61.9
Pavlov. Cond. lever contacts1.11.63.11.11.0-1.01.8
Pavlov. Cond. magazine entry number0.91.21.8-0.9-1.01.0-1.3
Pavlov. Cond. intertrial magazine entries0.00.00.00.0-0.00.00.1
Pavlov. Cond. lever-magazine prob. diff.1.21.92.71.21.3-1.31.6
Pavlov. Cond. response bias0.71.01.90.90.9-0.91.4
Time in closed arm before self-admin0.10.20.30.50.4-0.40.1
Time in closed arm after self-admin0.30.40.6-0.5-0.50.5-0.8
Time in open arm before self-admin0.70.91.8-0.9-0.70.7-1.3
Time in open arm after self-admin0.10.10.20.1-0.00.00.5
Bone: periosteal estimation4.911.713.1-3.5-3.63.6-2.8
Bone: periosteal perimeter4.28.29.2-2.9-3.03.0-2.5
Bone: post-yield work1.32.22.3-1.4-1.51.5-1.5
Progressive ratio test 1 active lever presses2.84.95.82.32.4-2.41.6
Progressive ratio test 1 breakpoint2.74.75.52.32.3-2.31.6
Progressive ratio test 1 inactive lever presses0.10.30.40.70.5-0.50.6
Progressive ratio test 2 active lever presses0.00.10.1-0.3-0.20.2-0.3
Progressive ratio test 2 breakpoint0.10.10.1-0.3-0.20.2-0.3
Progressive ratio test 2 inactive lever presses0.10.30.4-0.6-0.60.6-0.3
Incentive Sensitization - Responses0.82.22.5-1.6-1.51.5-1.2
Incentive Sensitization - Breakpoint1.12.52.7-1.7-1.61.6-1.4
Sum of active levers in priming session hrs 5-60.10.00.10.10.3-0.30.1
Progressive ratio0.00.00.10.40.1-0.10.1
Food seeking constrained by brief footshock0.10.20.5-0.10.2-0.20.7
Seeking ratio, punishment vs. effort0.00.10.2-0.4-0.00.00.3
Retroperitoneal fat weight0.83.64.71.81.8-1.82.2
Reaction time number correct0.00.10.4-0.0-0.30.3-0.6
Reaction time mean minus median0.10.40.40.60.6-0.60.6
Reaction time mean minus median AUC0.10.40.50.70.6-0.60.5
Reaction time num false alarms2.95.06.32.02.2-2.22.5
Reaction time num false alarms AUC2.45.66.72.22.4-2.42.6
Reaction time trials correct on left0.00.10.4-0.0-0.30.3-0.6
Reaction time trials on left0.00.10.30.0-0.20.2-0.5
Reaction time mean0.30.71.2-1.1-0.90.9-0.2
Reaction time mean AUC0.41.01.4-1.2-1.01.0-0.5
Median of all reaction times1.01.62.6-1.6-1.41.4-0.5
Reaction time omissions0.60.93.40.40.3-0.31.8
Reaction time false alarm rate2.73.75.11.61.9-1.92.3
Reaction time premature initiation rate0.10.10.3-0.3-0.10.10.6
Reaction time premature initiations0.00.10.1-0.4-0.30.30.1
Std. dev. reaction times0.00.10.20.10.2-0.20.5
Reaction time trials completed0.00.10.30.0-0.20.2-0.5
Reaction time trials AUC0.10.20.5-0.1-0.30.3-0.7
Run reversals in cocaine runway, females0.20.20.4-0.7-0.50.5-0.2
Run reversals in cocaine runway, males0.80.81.91.40.9-0.90.2
Latency to leave start box in cocaine runway0.10.10.2-0.4-0.30.3-0.4
Latency to leave start box in cocaine runway, F0.20.30.40.50.6-0.60.4
Latency to leave start box in cocaine runway, M2.01.92.4-1.5-1.41.4-1.2
Std. dev. time between licks in bursts1.12.12.61.61.6-1.60.9
Total sessions with >9 infusions0.20.20.30.20.6-0.60.5
Short access day 1 total inactive lever presses0.00.00.00.10.2-0.2-0.0
Short access day 10 total inactive lever presses0.21.52.2-1.5-1.31.3-0.6
Short access day 1 total infusions0.10.10.3-0.6-0.30.30.0
Short access day 10 total infusions0.60.91.11.01.0-1.00.8
Short access total infusions0.10.20.30.40.6-0.60.3
Short access day 1 locomotion0.00.00.1-0.3-0.00.0-0.1
Short access day 10 total locomotion0.00.10.2-0.5-0.20.20.1
Short access total locomotion0.20.30.50.40.7-0.70.4
One hour access (0.3 mA shock)1.72.12.5-1.4-1.41.4-1.6
Compulsive drug intake1.82.63.1-1.6-1.81.8-1.2
One hour access (shock baseline)0.10.40.9-0.4-0.40.4-0.9
Social response proportion0.50.61.40.40.6-0.61.2
Social responses1.82.42.61.41.6-1.61.6
Social time0.30.51.00.50.5-0.51.0
Soleus weight0.51.52.4-1.1-1.11.1-1.5
Bone: stiffness4.37.78.4-2.8-2.92.9-2.5
Tibialis anterior weight3.110.818.5-3.0-2.82.8-4.3
Time to tail flick, vehicle, before self-admin0.00.00.0-0.20.1-0.1-0.1
Time to tail flick, vehicle, after self-admin0.30.70.8-0.7-0.90.9-0.7
Time to tail flick, test, before self-admin1.31.51.71.31.2-1.21.1
Time to tail flick, test, after self-admin1.71.82.5-1.6-1.41.4-1.0
Delta time to tail flick, vehicle, before/after SA0.60.60.9-0.6-1.01.0-0.6
Delta time to tail flick, test, before/after SA2.43.04.2-2.0-1.81.8-1.1
Tibia length1.43.84.9-2.2-2.12.1-1.3
Ambulatory time before self-admin0.00.00.00.2-0.10.1-0.0
Ambulatory time after self-admin1.21.92.5-1.6-1.61.6-0.5
Bone: tissue strength1.21.22.1-0.8-1.01.0-1.4
Total heroin consumption3.44.05.0-2.2-2.02.0-1.8
Bone: trabecular number0.71.31.8-1.3-1.21.2-0.6
Bone: trabecular spacing0.00.00.00.00.1-0.1-0.2
Bone: trabecular thickness0.00.00.10.1-0.00.00.3
Bone: trabecular tissue density0.30.50.60.60.8-0.80.7
Water consumed over 24 hours0.00.00.2-0.1-0.10.1-0.4
Number of responses in last shaping day2.02.52.91.41.6-1.61.7