Hspb6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Hspb6 0.12 0.07 7.7e-09 0.06 0.07 0.07 0.07 3.9e-07 3.4e-08 2.0e-08 3.2e-08
2 Brain gene expression Hspb6 0.18 0.09 4.8e-15 0.13 0.16 0.15 0.15 5.9e-12 1.5e-14 4.1e-14 7.4e-14
3 pVTA gene expression Hspb6 0.07 0.05 2.4e-03 0 0.03 0 0 2.3e-01 1.3e-02 3.3e-01 1.9e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.01.72.30.81.51.5
Area under the delay curve0.30.30.91.0-0.0-0.2
BMI with tail0.10.50.9-0.3-0.7-0.9
BMI without tail0.00.00.10.10.10.2
Body weight2.912.114.13.23.83.5
Weight adjusted by age0.30.30.40.60.60.5
Bone surface1.73.14.02.01.71.5
Bone volume1.93.33.51.91.91.7
Breakpoint value in progressive ratio session0.70.71.71.30.60.3
Number of licking bursts3.03.55.2-1.0-2.1-2.3
Context. condit. distance diff. score0.10.10.20.4-0.1-0.5
Locomotion velocity, session 10.20.20.5-0.7-0.3-0.2
Locomotion distance, session 11.21.53.82.00.70.4
Locomotion velocity, session 20.60.71.4-0.4-1.2-0.8
Locomotion distance, session 21.52.03.00.8-1.6-1.7
Locomotion velocity, session 30.20.20.40.2-0.6-0.5
Locomotion distance, session 33.43.79.93.10.90.5
Stereotopy head waving bouts, day 31.11.33.7-1.9-0.5-0.0
Stereotopy head waving duration, day 31.92.36.0-2.4-0.9-0.5
Locomotion velocity, session 70.70.82.31.50.40.1
Locomotion distance, session 70.40.51.11.10.50.4
Stereotopy head waving bouts, day 71.41.62.2-0.7-1.5-1.5
Stereotopy head waving duration, day 72.42.93.0-1.6-1.7-1.7
Locomotion velocity, session 83.54.26.0-1.0-2.3-2.4
Locomotion distance, session 81.21.72.80.8-1.3-1.7
Degree of sensitization distance0.91.02.8-1.7-0.10.2
Degree of sensitization stereotypy1.82.03.0-0.6-1.6-1.7
Conditioned locomotion0.80.91.3-0.6-1.1-1.1
Cocaine response after cond. corrected0.60.71.9-1.40.10.4
Cocaine response after cond. not corrected1.11.22.8-1.70.30.8
Cocaine response before conditioning0.91.11.80.61.01.3
Saline control response0.00.00.1-0.20.10.3
Bone: connectivity density0.30.50.50.70.60.7
Bone: cortical apparent density1.21.52.5-0.6-1.3-1.6
Bone: cortical area1.32.02.31.21.51.5
Bone: cortical porosity2.62.94.4-0.6-2.1-2.0
Bone: cortical porosity3.13.45.2-0.6-2.3-2.2
Bone: cortical thickness0.30.61.00.20.81.0
Bone: cortical thickness0.40.50.9-1.0-0.5-0.4
Bone: cortical tissue density1.41.93.0-0.7-1.5-1.7
Condit. Reinf. active minus inactive responses0.20.20.30.0-0.5-0.5
Condit. Reinf. active-inactive response ratio0.20.20.6-0.8-0.3-0.0
Condit. Reinf. active responses1.82.23.5-0.4-1.7-1.9
Condit. Reinf. inactive responses2.42.84.90.0-1.9-2.2
Incentive salience index mean0.30.40.50.2-0.7-0.7
Condit. Reinf. lever presses0.20.30.30.5-0.5-0.5
Condit. Reinf. active minus inactive responses1.01.31.91.40.91.0
Condit. Reinf. active-inactive response ratio0.00.00.0-0.1-0.1-0.1
Condit. Reinf. active responses2.63.65.52.31.61.7
Condit. Reinf. inactive responses2.73.36.32.51.31.4
Condit. Reinf. lever presses5.77.88.42.72.82.9
Condit. Reinf. lever reinforcers received2.83.96.82.61.61.6
Conditioned reinforcement - actives0.20.20.4-0.4-0.6-0.4
Conditioned reinforcement - inactives1.31.43.61.9-0.4-0.7
Conditioned locomotion2.63.14.7-0.7-2.0-2.2
Patch foraging indifference point 0 sec0.00.00.10.2-0.3-0.0
Patch foraging indifference point AUC0.40.51.0-1.0-0.6-0.4
Delay disc. indifference point, 0s delay1.01.12.71.6-0.0-0.8
Delay disc. indifference point, 16s delay0.30.30.80.9-0.0-0.1
Delay disc. indifference point, 2s delay1.61.84.62.10.80.3
Delay disc. indifference point, 24s delay1.61.53.01.71.00.8
Delay disc. indifference point, 4s delay0.50.50.70.4-0.8-0.8
Delay disc. indifference point, 8s delay0.10.10.20.50.10.2
Indifference point function ln k0.50.71.41.20.60.6
Indifference point function log k0.50.71.41.20.60.6
Patch foraging total patch changes 0 sec0.00.10.20.4-0.10.1
Patch foraging total patch changes 12 sec0.20.30.6-0.8-0.5-0.1
Patch foraging total patch changes 18 sec0.00.10.1-0.1-0.3-0.3
Patch foraging total patch changes 24 sec0.60.71.31.10.80.5
Patch foraging total patch changes 6 sec0.00.10.1-0.3-0.30.1
Patch foraging time to switch 0 sec1.21.84.5-2.1-0.8-0.5
Patch foraging water rate 0 sec0.60.91.30.3-1.2-1.1
Patch foraging water rate 12 sec0.71.02.61.60.50.6
Patch foraging water rate 18 sec0.20.20.50.1-0.7-0.5
Patch foraging water rate 24 sec1.31.84.22.1-0.6-1.0
Patch foraging water rate 6 sec1.62.46.62.60.60.4
Seeking ratio, delayed vs. immediate footshock1.11.33.01.70.80.4
Distance traveled before self-admin0.00.00.0-0.1-0.00.0
Distance traveled after self-admin2.62.93.21.81.61.6
Extensor digitorum longus weight0.10.40.8-0.90.60.3
Bone: elastic displacement0.10.20.3-0.60.10.3
Bone: elastic work1.62.02.51.01.61.6
Bone: endosteal estimation1.43.03.82.01.61.6
Bone: endosteal perimeter1.22.44.02.01.31.2
Epididymis fat weight0.20.51.21.10.50.4
Delta time in closed arm before/after self-admin3.03.03.91.42.01.8
Delta time in open arm before/after self-admin0.80.71.0-1.0-0.9-0.6
Diff in mean of infusions in LGA sessions0.91.01.7-0.3-1.1-1.3
Delay discount exponential model param0.30.30.9-0.9-0.10.0
Extinction: sum of active levers before priming3.53.44.91.12.22.1
Active lever presses in extinction session 63.23.15.2-0.12.02.3
Bone: final force1.52.42.81.71.61.4
Bone: final moment2.03.23.61.81.91.7
Food consumed during 24 hour testing period0.70.82.31.50.30.2
Glucose0.20.41.1-1.00.00.2
Heart weight0.30.41.31.10.2-0.1
Delay discount hyperbolic model param0.30.31.0-1.0-0.10.1
Intermittent access intake day 1-15 change2.62.63.31.51.81.5
Intermittent access intake escalation2.62.63.11.61.81.4
Intermittent access intake escalation 21.41.41.90.71.41.3
Intermitt. access day 1 inactive lever presses1.81.92.01.41.41.4
Intermitt. access day 15 inactive lever presses0.30.30.90.9-0.0-0.2
Intermitt. access escalation Index0.30.20.40.4-0.4-0.7
Intermittent access day 1 total infusions3.03.45.5-0.4-2.2-2.3
Intermittent access day 15 total infusions0.80.91.21.0-0.7-1.1
Intermittent access terminal intake (last 3 days)1.21.32.10.6-1.2-1.5
Intermittent access total infusions1.51.62.70.2-1.4-1.6
Intermittent access day 1 locomotion2.52.64.30.3-1.8-2.1
Intermittent access day 15 total locomotion1.01.01.61.3-0.7-1.0
Intermittent access total locomotion2.02.33.7-0.1-1.8-1.9
Intermittent access standard deviation3.53.75.42.31.81.5
Left kidney weight3.59.813.41.83.73.6
Right kidney weight5.415.219.52.74.44.3
Cocaine induced anxiety0.50.50.70.50.80.8
Post-drug Anxiety0.20.30.7-0.8-0.3-0.2
Baseline Anxiety1.71.82.2-1.1-1.5-1.4
Tail length4.012.215.82.63.74.0
Length with tail7.427.230.44.75.55.4
Length without tail5.812.613.93.73.63.3
Times rat made contact with spout0.40.41.2-1.10.10.2
Lifetime Intake1.11.22.0-0.0-1.3-1.4
Liver weight, left0.30.41.2-1.1-0.2-0.0
Liver weight, right0.10.10.2-0.3-0.5-0.0
Locomotor activity0.60.92.4-1.5-0.50.1
Locomotor testing distance0.40.72.0-1.4-0.5-0.0
Locomotor testing rearing1.11.72.1-1.4-1.3-1.1
Locomotion in novel chamber0.50.61.1-1.0-0.7-0.4
Locomotion in novel chamber post-restriction0.10.10.1-0.4-0.2-0.1
Fecal boli incidents, locomotor time 12.62.83.7-1.9-1.7-1.4
Change in fecal boli incidents, locomotor task0.40.40.6-0.60.50.8
Time >=10cm from walls, locomotor time 10.10.10.1-0.4-0.1-0.1
Bouts of movement, locomotor time 10.90.92.81.70.1-0.2
Total resting periods, locomotor time 10.60.61.81.30.1-0.2
Rest time, locomotor task time 11.21.31.6-1.3-1.1-1.1
Distance moved, locomotor task time 10.30.30.70.80.50.3
Vertical activity count, locomotor time 12.02.13.21.81.21.2
Time >=10cm from walls, locomotor time 22.02.12.6-1.1-1.6-1.5
Bouts of movement, locomotor time 20.00.00.10.2-0.2-0.2
Total resting periods, locomotor time 20.10.10.2-0.1-0.4-0.3
Rest time, locomotor task time 20.80.91.1-1.1-1.0-0.7
Distance moved, locomotor task time 20.20.30.70.9-0.0-0.3
Vertical activity count, locomotor time 21.21.32.91.70.90.6
Light reinforcement 10.20.40.60.5-0.8-0.7
Light reinforcement 21.82.53.4-0.8-1.9-1.8
Bone: marrow area1.43.03.41.91.71.7
Bone: maximum diameter1.12.12.41.21.61.5
Bone: maximum force2.64.45.62.42.11.8
Bone: maximum moment3.05.26.12.52.32.0
Mean time between licks in bursts0.10.20.20.5-0.5-0.4
Mean num. licks in bursts2.22.64.10.31.92.0
Cd content in liver0.30.30.3-0.60.50.5
Co content in liver0.30.30.5-0.7-0.5-0.5
Cu content in liver0.50.60.80.90.80.7
Fe content in liver0.10.20.3-0.6-0.3-0.3
K content in liver0.10.10.20.2-0.4-0.2
Mg content in liver0.60.71.1-0.7-1.0-0.7
Mn content in liver1.51.73.4-1.9-1.2-0.6
Na content in liver1.01.02.11.40.70.7
Rb content in liver0.30.30.70.3-0.5-0.8
Se content in liver5.87.17.4-2.7-2.7-2.5
Sr content in liver1.11.02.0-1.4-0.9-0.5
Zn content in liver0.10.10.1-0.0-0.3-0.4
Bone: minimum diameter2.34.27.32.71.71.6
Time in familiar zone, hab. session 11.51.42.30.41.51.4
Time in novel zone, hab. session 12.92.94.5-0.7-2.1-1.9
Total zone transitions, hab. session 10.20.30.60.8-0.3-0.5
Total locomotion distance, hab. session 10.20.30.60.80.30.6
Locomotion velocity, hab. session 10.10.20.40.30.20.6
Time in familiar zone, hab. session 21.31.32.4-0.31.21.6
Time in novel zone, hab. session 20.70.71.1-0.0-1.0-1.1
Total zone transitions, hab. session 22.93.75.5-0.8-2.3-2.2
Total locomotion distance, hab. session 20.60.81.50.0-1.2-1.0
Locomotion velocity, hab. session 20.60.81.4-0.2-1.2-1.0
Novel to familiar place preference ratio0.10.10.30.50.10.1
Novelty place preference0.10.10.20.50.0-0.0
Time in novel zone, NPP test0.10.10.20.4-0.1-0.3
Total zone transitions, NPP test0.10.10.40.6-0.1-0.2
Total locomotion distance, NPP test1.62.32.81.41.41.7
Locomotion velocity, NPP test1.62.23.01.21.41.7
Intraocular pressure0.10.10.2-0.3-0.3-0.5
Delta distance traveled before/after self-admin3.74.04.32.12.01.9
Delta ambulatory time before/after self-admin4.34.75.62.42.12.0
Parametrial fat weight0.81.52.2-1.50.81.3
Pavlov. Cond. lever latency0.50.61.30.11.10.8
Pavlov. Cond. magazine entry latency0.60.81.8-0.3-1.3-0.7
Pavlov. Cond. change in total contacts1.41.52.30.7-1.5-1.3
Pavlov. Cond. index score0.91.22.5-0.3-1.6-1.0
Pavlov. Cond. latency score0.70.91.90.0-1.4-0.9
Pavlov. Cond. lever contacts0.30.30.70.3-0.8-0.4
Pavlov. Cond. magazine entry number0.81.02.20.21.50.9
Pavlov. Cond. intertrial magazine entries0.30.40.6-0.4-0.6-0.8
Pavlov. Cond. lever-magazine prob. diff.1.21.53.1-0.3-1.8-1.1
Pavlov. Cond. response bias0.30.41.1-0.2-1.0-0.4
Pavlov. Cond. lever latency4.35.88.0-2.8-2.2-2.1
Pavlov. Cond. magazine entry latency1.41.61.81.21.21.3
Pavlov. Cond. change in total contacts6.38.611.53.42.82.5
Pavlov. Cond. index score3.84.86.02.42.12.0
Pavlov. Cond. latency score3.44.25.42.31.91.9
Pavlov. Cond. lever contacts4.05.57.92.82.22.0
Pavlov. Cond. magazine entry number3.23.94.1-2.0-2.0-1.9
Pavlov. Cond. intertrial magazine entries0.70.91.5-1.2-0.8-0.8
Pavlov. Cond. lever-magazine prob. diff.3.74.75.12.32.12.1
Pavlov. Cond. response bias4.56.19.13.02.32.0
Time in closed arm before self-admin2.73.04.2-1.0-2.0-2.0
Time in closed arm after self-admin0.10.10.10.40.0-0.3
Time in open arm before self-admin4.04.36.21.42.22.5
Time in open arm after self-admin0.91.02.00.50.91.4
Bone: periosteal estimation1.93.93.92.02.02.0
Bone: periosteal perimeter0.91.62.10.91.31.5
Bone: post-yield work1.62.25.22.31.00.7
Progressive ratio test 1 active lever presses0.60.72.01.40.0-0.3
Progressive ratio test 1 breakpoint0.70.72.01.40.30.1
Progressive ratio test 1 inactive lever presses1.01.12.71.6-0.3-0.6
Progressive ratio test 2 active lever presses0.40.40.60.8-0.4-0.6
Progressive ratio test 2 breakpoint0.30.30.40.6-0.5-0.7
Progressive ratio test 2 inactive lever presses1.51.73.82.0-0.4-1.0
Incentive Sensitization - Responses0.10.10.20.3-0.3-0.5
Incentive Sensitization - Breakpoint0.10.10.20.3-0.2-0.4
Sum of active levers in priming session hrs 5-60.20.20.30.30.50.4
Progressive ratio0.10.10.2-0.1-0.5-0.2
Food seeking constrained by brief footshock1.72.12.51.41.41.6
Seeking ratio, punishment vs. effort0.60.71.41.20.70.5
Retroperitoneal fat weight0.72.35.0-2.2-1.1-0.8
Reaction time number correct0.10.10.30.50.20.2
Reaction time mean minus median0.40.60.90.20.90.9
Reaction time mean minus median AUC1.11.52.10.61.41.4
Reaction time num false alarms0.81.01.3-1.1-0.9-1.0
Reaction time num false alarms AUC1.11.52.1-1.4-1.1-1.1
Reaction time trials correct on left0.10.10.30.50.20.2
Reaction time trials on left0.10.10.30.50.30.2
Reaction time mean0.20.30.40.40.60.6
Reaction time mean AUC0.10.20.30.10.40.5
Median of all reaction times0.00.10.10.30.30.2
Reaction time omissions0.10.10.3-0.50.10.4
Reaction time false alarm rate1.01.42.0-1.4-1.0-1.0
Reaction time premature initiation rate0.20.30.50.3-0.7-0.6
Reaction time premature initiations0.20.30.30.6-0.5-0.5
Std. dev. reaction times0.60.91.20.71.11.0
Reaction time trials completed0.10.10.30.50.30.2
Reaction time trials AUC0.10.10.10.20.30.3
Run reversals in cocaine runway, females1.11.01.81.40.90.6
Run reversals in cocaine runway, males1.21.22.6-1.60.20.9
Latency to leave start box in cocaine runway0.50.51.31.10.5-0.0
Latency to leave start box in cocaine runway, F0.50.61.61.30.1-0.4
Latency to leave start box in cocaine runway, M0.20.20.2-0.40.50.3
Std. dev. time between licks in bursts0.80.91.11.0-1.0-0.9
Total sessions with >9 infusions0.80.91.4-0.7-1.2-1.0
Short access day 1 total inactive lever presses1.41.63.11.8-0.6-1.1
Short access day 10 total inactive lever presses1.01.22.51.60.80.5
Short access day 1 total infusions0.20.20.30.5-0.5-0.5
Short access day 10 total infusions0.40.40.6-0.5-0.7-0.8
Short access total infusions0.60.71.0-0.6-1.0-0.9
Short access day 1 locomotion0.20.20.3-0.0-0.5-0.5
Short access day 10 total locomotion0.40.51.41.2-0.2-0.2
Short access total locomotion1.11.21.8-0.5-1.4-1.2
One hour access (0.3 mA shock)0.91.13.31.8-0.0-0.1
Compulsive drug intake0.10.10.10.40.00.2
One hour access (shock baseline)0.40.40.50.7-0.6-0.7
Social response proportion1.31.52.01.41.21.0
Social responses0.20.20.40.60.30.4
Social time2.83.77.22.71.61.2
Soleus weight0.10.20.5-0.7-0.2-0.1
Bone: stiffness1.52.43.71.91.51.1
Tibialis anterior weight0.31.01.2-1.01.10.9
Time to tail flick, vehicle, before self-admin0.80.91.2-0.4-1.1-1.1
Time to tail flick, vehicle, after self-admin0.30.40.8-0.9-0.5-0.2
Time to tail flick, test, before self-admin1.21.21.91.4-0.7-1.1
Time to tail flick, test, after self-admin0.10.10.30.5-0.1-0.2
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.10.30.7
Delta time to tail flick, test, before/after SA0.90.82.1-1.5-0.10.4
Tibia length3.39.410.53.23.22.7
Ambulatory time before self-admin0.00.00.1-0.2-0.3-0.2
Ambulatory time after self-admin5.35.97.72.82.32.1
Bone: tissue strength2.62.54.02.01.51.1
Total heroin consumption0.20.20.60.80.2-0.0
Bone: trabecular number1.93.04.12.01.61.4
Bone: trabecular spacing0.40.51.3-1.10.00.6
Bone: trabecular thickness0.20.20.40.60.50.1
Bone: trabecular tissue density2.63.710.3-3.2-0.8-0.4
Water consumed over 24 hours0.60.70.91.00.90.7
Number of responses in last shaping day0.91.01.11.1-0.9-1.0