Hormad2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA intron excision ratio chr14_79274240_79281537 0.16 0.12 8.9e-03 0.03 0.03 0.02 0.05 2.2e-02 1.3e-02 3.4e-02 3.3e-03
2 Liver gene expression Hormad2 0.06 0.06 3.7e-03 0.01 0 0.01 0.01 7.3e-03 9.8e-02 6.5e-02 7.1e-02
3 Adipose gene expression Hormad2 0.14 0.09 7.7e-05 0.02 0.03 0.03 0.02 1.7e-03 2.7e-04 5.2e-04 1.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.71.12.0-0.61.4-1.0
Area under the delay curve2.93.09.03.0-0.2-0.1
BMI with tail0.10.41.10.4-0.31.0
BMI without tail0.40.71.4-0.01.2-0.9
Body weight0.41.74.72.20.5-0.4
Weight adjusted by age0.70.71.00.81.0-0.8
Bone surface0.10.20.40.60.6-0.2
Bone volume0.20.40.60.40.8-0.6
Breakpoint value in progressive ratio session0.10.20.30.5-0.40.1
Number of licking bursts1.41.72.51.40.8-1.6
Context. condit. distance diff. score1.41.74.9-2.2-0.10.5
Locomotion velocity, session 12.62.84.40.1-2.02.1
Locomotion distance, session 10.70.92.2-1.50.70.1
Locomotion velocity, session 22.22.64.70.2-2.21.7
Locomotion distance, session 21.01.31.9-1.4-0.81.2
Locomotion velocity, session 30.70.82.2-1.50.50.3
Locomotion distance, session 30.40.40.60.8-0.40.7
Stereotopy head waving bouts, day 30.40.51.3-1.10.20.2
Stereotopy head waving duration, day 31.11.33.3-1.8-0.10.7
Locomotion velocity, session 70.40.40.50.6-0.50.7
Locomotion distance, session 70.60.81.6-0.7-0.61.3
Stereotopy head waving bouts, day 70.00.00.1-0.30.10.1
Stereotopy head waving duration, day 70.20.20.40.10.6-0.4
Locomotion velocity, session 81.51.82.6-1.1-1.61.2
Locomotion distance, session 83.14.612.9-3.6-0.30.9
Degree of sensitization distance1.81.84.9-2.2-0.40.6
Degree of sensitization stereotypy0.30.30.40.40.6-0.6
Conditioned locomotion0.70.81.3-0.81.1-0.8
Cocaine response after cond. corrected0.30.40.91.00.4-0.1
Cocaine response after cond. not corrected0.70.81.71.30.7-0.3
Cocaine response before conditioning0.00.00.1-0.10.30.0
Saline control response1.11.52.6-1.1-0.81.6
Bone: connectivity density0.40.71.4-0.71.2-0.4
Bone: cortical apparent density0.10.10.30.10.2-0.5
Bone: cortical area0.81.33.71.90.2-0.2
Bone: cortical porosity0.50.61.00.51.0-0.7
Bone: cortical porosity0.30.30.60.10.8-0.6
Bone: cortical thickness0.81.32.21.51.0-0.9
Bone: cortical thickness1.21.42.8-0.61.7-1.0
Bone: cortical tissue density0.10.10.20.20.1-0.5
Condit. Reinf. active minus inactive responses1.92.14.10.4-1.42.0
Condit. Reinf. active-inactive response ratio4.24.57.2-0.1-2.52.7
Condit. Reinf. active responses0.81.02.20.1-0.91.5
Condit. Reinf. inactive responses0.50.61.00.21.0-0.9
Incentive salience index mean1.31.62.71.0-1.11.6
Condit. Reinf. lever presses0.20.30.70.8-0.10.5
Condit. Reinf. active minus inactive responses0.20.20.7-0.80.10.1
Condit. Reinf. active-inactive response ratio0.00.00.10.10.00.4
Condit. Reinf. active responses0.71.02.3-1.5-0.30.8
Condit. Reinf. inactive responses1.11.43.2-1.8-0.50.8
Condit. Reinf. lever presses0.20.30.9-0.90.30.3
Condit. Reinf. lever reinforcers received0.71.02.0-1.4-0.21.0
Conditioned reinforcement - actives1.21.21.31.0-1.11.1
Conditioned reinforcement - inactives0.91.02.31.5-0.60.6
Conditioned locomotion0.10.10.40.6-0.1-0.1
Patch foraging indifference point 0 sec0.30.40.70.60.3-0.9
Patch foraging indifference point AUC0.50.61.4-0.0-0.71.2
Delay disc. indifference point, 0s delay1.21.33.71.90.3-0.0
Delay disc. indifference point, 16s delay2.82.86.22.5-1.30.7
Delay disc. indifference point, 2s delay2.22.44.42.11.3-1.1
Delay disc. indifference point, 24s delay1.91.83.81.9-0.91.0
Delay disc. indifference point, 4s delay1.81.95.02.20.7-0.4
Delay disc. indifference point, 8s delay0.90.92.51.6-0.40.1
Indifference point function ln k0.40.61.1-0.21.1-0.8
Indifference point function log k0.40.61.1-0.21.1-0.8
Patch foraging total patch changes 0 sec0.20.30.60.80.0-0.6
Patch foraging total patch changes 12 sec0.00.10.10.4-0.20.0
Patch foraging total patch changes 18 sec1.21.62.01.0-1.41.3
Patch foraging total patch changes 24 sec1.41.73.2-1.8-0.71.2
Patch foraging total patch changes 6 sec0.20.30.30.6-0.50.4
Patch foraging time to switch 0 sec0.50.81.6-0.80.3-1.3
Patch foraging water rate 0 sec0.81.21.61.3-0.91.1
Patch foraging water rate 12 sec0.10.20.50.10.00.7
Patch foraging water rate 18 sec2.12.94.4-1.12.1-1.7
Patch foraging water rate 24 sec0.50.61.0-0.0-0.91.0
Patch foraging water rate 6 sec0.10.10.30.30.5-0.2
Seeking ratio, delayed vs. immediate footshock0.00.00.0-0.1-0.10.1
Distance traveled before self-admin1.11.11.90.21.2-1.4
Distance traveled after self-admin0.80.91.40.51.1-1.2
Extensor digitorum longus weight1.24.613.13.60.6-0.6
Bone: elastic displacement1.31.52.0-0.81.3-1.4
Bone: elastic work1.62.13.2-0.21.7-1.8
Bone: endosteal estimation0.00.10.10.20.1-0.3
Bone: endosteal perimeter0.20.51.41.2-0.20.1
Epididymis fat weight0.61.42.6-0.41.2-1.6
Delta time in closed arm before/after self-admin2.62.56.8-2.60.9-0.1
Delta time in open arm before/after self-admin2.62.56.52.5-1.00.3
Diff in mean of infusions in LGA sessions0.30.30.4-0.40.6-0.6
Delay discount exponential model param2.72.88.4-2.90.10.1
Extinction: sum of active levers before priming1.61.62.01.1-1.31.4
Active lever presses in extinction session 60.60.51.31.10.5-0.3
Bone: final force0.00.10.10.30.2-0.2
Bone: final moment0.20.30.30.50.4-0.6
Food consumed during 24 hour testing period1.41.72.90.9-1.71.2
Glucose18.127.330.85.3-5.54.8
Heart weight0.60.91.2-0.7-1.01.1
Delay discount hyperbolic model param2.72.88.4-2.9-0.00.1
Intermittent access intake day 1-15 change2.12.13.50.8-1.91.5
Intermittent access intake escalation1.71.73.30.5-1.81.2
Intermittent access intake escalation 20.50.51.50.2-1.20.1
Intermitt. access day 1 inactive lever presses0.70.71.2-1.00.21.1
Intermitt. access day 15 inactive lever presses2.12.34.10.9-1.52.0
Intermitt. access escalation Index0.40.30.7-0.3-0.50.9
Intermittent access day 1 total infusions0.40.50.80.40.7-0.9
Intermittent access day 15 total infusions0.60.61.31.1-0.70.3
Intermittent access terminal intake (last 3 days)0.20.30.40.6-0.60.2
Intermittent access total infusions0.20.20.60.8-0.1-0.3
Intermittent access day 1 locomotion0.40.51.0-1.00.3-0.5
Intermittent access day 15 total locomotion0.80.81.21.1-0.90.6
Intermittent access total locomotion0.30.40.50.7-0.70.4
Intermittent access standard deviation0.20.30.8-0.9-0.0-0.1
Left kidney weight0.72.12.5-1.31.6-1.5
Right kidney weight1.95.26.5-2.02.5-2.3
Cocaine induced anxiety1.41.62.11.3-1.40.9
Post-drug Anxiety1.01.11.31.0-1.11.0
Baseline Anxiety0.10.10.30.5-0.30.1
Tail length1.54.76.71.32.4-2.6
Length with tail0.72.73.81.91.1-1.7
Length without tail0.61.42.81.7-1.00.5
Times rat made contact with spout2.42.75.20.5-2.31.6
Lifetime Intake0.30.30.70.80.2-0.5
Liver weight, left4.36.98.5-2.92.7-2.3
Liver weight, right3.35.49.7-3.12.1-1.5
Locomotor activity0.71.12.11.5-1.00.4
Locomotor testing distance0.81.41.71.01.2-1.3
Locomotor testing rearing0.91.44.02.0-0.40.3
Locomotion in novel chamber0.91.11.6-1.31.1-0.6
Locomotion in novel chamber post-restriction1.72.12.5-1.5-1.31.6
Fecal boli incidents, locomotor time 10.10.10.2-0.4-0.30.4
Change in fecal boli incidents, locomotor task0.90.81.4-0.4-1.21.0
Time >=10cm from walls, locomotor time 10.20.20.7-0.8-0.2-0.1
Bouts of movement, locomotor time 11.51.63.00.2-1.41.7
Total resting periods, locomotor time 12.22.54.70.3-1.62.2
Rest time, locomotor task time 10.91.02.00.0-1.01.4
Distance moved, locomotor task time 11.71.94.00.31.2-2.0
Vertical activity count, locomotor time 11.01.02.60.00.7-1.6
Time >=10cm from walls, locomotor time 20.30.40.5-0.7-0.50.5
Bouts of movement, locomotor time 20.30.30.6-0.50.30.8
Total resting periods, locomotor time 20.40.51.3-0.3-0.01.1
Rest time, locomotor task time 20.20.30.4-0.5-0.40.6
Distance moved, locomotor task time 20.00.10.1-0.10.0-0.4
Vertical activity count, locomotor time 20.00.00.10.10.1-0.3
Light reinforcement 10.10.10.20.30.5-0.0
Light reinforcement 20.91.32.2-0.11.3-1.5
Bone: marrow area0.00.00.00.20.1-0.2
Bone: maximum diameter2.03.67.82.8-1.41.0
Bone: maximum force0.20.30.60.20.5-0.8
Bone: maximum moment0.40.71.40.40.8-1.2
Mean time between licks in bursts1.52.13.60.2-1.91.6
Mean num. licks in bursts3.54.26.5-1.1-2.32.5
Cd content in liver0.40.41.1-1.00.3-0.3
Co content in liver0.10.20.30.40.00.6
Cu content in liver0.10.10.20.2-0.10.4
Fe content in liver2.12.64.0-0.4-2.01.9
K content in liver0.90.91.40.71.2-0.8
Mg content in liver0.60.71.91.4-0.00.2
Mn content in liver0.80.91.70.31.3-1.0
Na content in liver3.63.87.62.8-1.41.4
Rb content in liver0.60.82.01.40.2-0.5
Se content in liver0.60.72.01.40.0-0.3
Sr content in liver1.00.91.41.1-1.20.6
Zn content in liver0.20.30.50.7-0.0-0.6
Bone: minimum diameter0.10.10.3-0.20.5-0.3
Time in familiar zone, hab. session 10.50.50.8-0.90.2-0.7
Time in novel zone, hab. session 10.40.40.70.80.6-0.4
Total zone transitions, hab. session 10.10.10.2-0.4-0.30.4
Total locomotion distance, hab. session 10.00.10.20.0-0.20.4
Locomotion velocity, hab. session 10.50.71.4-0.2-0.81.2
Time in familiar zone, hab. session 21.81.95.6-2.40.1-0.2
Time in novel zone, hab. session 21.71.74.92.2-0.1-0.3
Total zone transitions, hab. session 20.40.50.60.8-0.60.7
Total locomotion distance, hab. session 20.91.11.31.1-1.20.9
Locomotion velocity, hab. session 20.91.21.71.3-1.00.9
Novel to familiar place preference ratio2.22.32.71.6-1.31.6
Novelty place preference2.12.22.51.6-1.31.5
Time in novel zone, NPP test2.02.02.21.5-1.31.5
Total zone transitions, NPP test0.20.30.5-0.50.7-0.2
Total locomotion distance, NPP test0.00.00.0-0.00.20.1
Locomotion velocity, NPP test0.00.00.10.30.20.2
Intraocular pressure0.91.32.20.6-1.51.2
Delta distance traveled before/after self-admin0.10.10.10.2-0.30.4
Delta ambulatory time before/after self-admin0.10.10.1-0.2-0.20.3
Parametrial fat weight1.83.54.31.7-2.11.9
Pavlov. Cond. lever latency0.40.50.60.6-0.80.6
Pavlov. Cond. magazine entry latency0.40.51.2-1.10.4-0.2
Pavlov. Cond. change in total contacts0.60.61.71.3-0.40.3
Pavlov. Cond. index score0.50.61.5-1.20.5-0.2
Pavlov. Cond. latency score0.50.61.4-1.20.5-0.3
Pavlov. Cond. lever contacts0.20.20.5-0.70.2-0.2
Pavlov. Cond. magazine entry number0.30.41.01.00.1-0.4
Pavlov. Cond. intertrial magazine entries0.70.92.00.21.4-0.7
Pavlov. Cond. lever-magazine prob. diff.0.50.61.7-1.30.5-0.2
Pavlov. Cond. response bias0.00.10.1-0.30.20.2
Pavlov. Cond. lever latency1.62.22.61.61.2-1.6
Pavlov. Cond. magazine entry latency0.20.20.30.10.5-0.5
Pavlov. Cond. change in total contacts0.30.40.8-0.9-0.30.5
Pavlov. Cond. index score0.50.61.2-1.1-0.40.6
Pavlov. Cond. latency score0.40.51.3-1.1-0.20.4
Pavlov. Cond. lever contacts1.52.13.0-1.7-1.11.4
Pavlov. Cond. magazine entry number0.00.00.1-0.10.20.0
Pavlov. Cond. intertrial magazine entries0.30.30.8-0.1-0.50.9
Pavlov. Cond. lever-magazine prob. diff.0.40.51.3-1.1-0.10.3
Pavlov. Cond. response bias0.71.01.0-1.0-1.01.0
Time in closed arm before self-admin0.30.30.8-0.20.5-0.9
Time in closed arm after self-admin2.02.04.8-2.20.9-0.7
Time in open arm before self-admin0.10.20.3-0.3-0.10.6
Time in open arm after self-admin1.92.12.71.1-1.61.7
Bone: periosteal estimation0.30.51.51.20.2-0.3
Bone: periosteal perimeter0.71.13.41.8-0.00.1
Bone: post-yield work0.30.40.80.6-0.0-0.9
Progressive ratio test 1 active lever presses0.70.71.51.2-0.40.7
Progressive ratio test 1 breakpoint0.40.40.70.8-0.20.7
Progressive ratio test 1 inactive lever presses1.21.43.82.00.00.5
Progressive ratio test 2 active lever presses0.50.61.41.2-0.5-0.2
Progressive ratio test 2 breakpoint0.60.71.61.3-0.70.2
Progressive ratio test 2 inactive lever presses1.61.82.81.7-1.40.9
Incentive Sensitization - Responses0.50.51.11.0-0.6-0.3
Incentive Sensitization - Breakpoint0.50.51.11.0-0.5-0.4
Sum of active levers in priming session hrs 5-60.30.20.60.7-0.20.3
Progressive ratio0.91.02.30.50.7-1.5
Food seeking constrained by brief footshock3.23.95.21.91.7-2.3
Seeking ratio, punishment vs. effort0.20.30.60.80.30.4
Retroperitoneal fat weight0.20.60.8-0.1-0.90.9
Reaction time number correct0.30.40.8-0.1-0.90.6
Reaction time mean minus median0.40.51.2-0.1-1.10.5
Reaction time mean minus median AUC0.10.10.20.1-0.40.2
Reaction time num false alarms0.30.50.70.60.8-0.6
Reaction time num false alarms AUC0.81.11.60.41.3-1.2
Reaction time trials correct on left0.30.40.8-0.1-0.90.6
Reaction time trials on left0.30.40.8-0.1-0.90.6
Reaction time mean0.10.10.2-0.4-0.40.0
Reaction time mean AUC0.10.10.3-0.6-0.1-0.1
Median of all reaction times0.10.10.2-0.5-0.1-0.0
Reaction time omissions0.20.30.7-0.80.10.4
Reaction time false alarm rate1.41.93.10.41.8-1.5
Reaction time premature initiation rate2.12.96.8-2.61.3-0.2
Reaction time premature initiations1.11.64.3-2.10.50.2
Std. dev. reaction times0.30.51.10.1-1.10.5
Reaction time trials completed0.30.40.8-0.1-0.90.6
Reaction time trials AUC0.20.30.60.0-0.80.5
Run reversals in cocaine runway, females0.20.20.5-0.7-0.0-0.5
Run reversals in cocaine runway, males0.00.00.0-0.0-0.1-0.2
Latency to leave start box in cocaine runway0.10.10.30.10.6-0.3
Latency to leave start box in cocaine runway, F0.50.51.0-0.11.0-0.7
Latency to leave start box in cocaine runway, M0.30.30.40.5-0.40.6
Std. dev. time between licks in bursts0.10.10.3-0.5-0.10.3
Total sessions with >9 infusions0.10.10.1-0.30.4-0.1
Short access day 1 total inactive lever presses1.21.32.81.70.7-0.8
Short access day 10 total inactive lever presses0.50.60.9-1.00.80.4
Short access day 1 total infusions0.70.71.6-0.01.3-0.7
Short access day 10 total infusions0.50.50.8-0.30.9-0.8
Short access total infusions0.91.01.7-0.11.3-1.1
Short access day 1 locomotion2.72.93.2-1.61.8-1.7
Short access day 10 total locomotion0.91.02.3-1.50.6-0.6
Short access total locomotion2.72.85.4-2.31.4-1.1
One hour access (0.3 mA shock)0.20.30.50.7-0.5-0.2
Compulsive drug intake2.02.05.7-2.40.40.2
One hour access (shock baseline)1.92.25.72.4-0.90.2
Social response proportion2.12.24.01.0-2.01.4
Social responses1.92.54.11.1-2.01.4
Social time0.50.71.4-0.5-1.20.5
Soleus weight1.02.94.41.41.6-2.1
Bone: stiffness0.10.10.2-0.4-0.00.5
Tibialis anterior weight0.72.36.62.6-0.2-0.4
Time to tail flick, vehicle, before self-admin0.30.30.50.10.5-0.7
Time to tail flick, vehicle, after self-admin0.50.50.7-0.50.8-0.7
Time to tail flick, test, before self-admin0.30.30.8-0.90.10.3
Time to tail flick, test, after self-admin1.21.22.31.50.7-1.0
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.40.1-0.0
Delta time to tail flick, test, before/after SA0.70.61.71.3-0.2-0.2
Tibia length1.23.45.1-0.82.1-2.3
Ambulatory time before self-admin1.92.03.40.31.6-1.9
Ambulatory time after self-admin0.80.91.60.31.0-1.3
Bone: tissue strength0.30.30.9-0.3-0.1-1.0
Total heroin consumption0.00.00.1-0.30.10.0
Bone: trabecular number0.81.22.4-0.41.6-1.0
Bone: trabecular spacing0.70.91.41.0-1.20.3
Bone: trabecular thickness1.82.13.0-1.41.7-1.2
Bone: trabecular tissue density0.40.61.2-0.3-1.10.7
Water consumed over 24 hours0.80.92.40.4-1.50.5
Number of responses in last shaping day0.20.30.6-0.70.5-0.1