Hormad2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb alternative TSS NM_001017501.1 0.3 0.17 2.8e-03 0.04 0.08 0.05 0.05 3.9e-02 5.2e-03 2.9e-02 2.2e-02
2 Liver gene expression Hormad2 0.06 0.06 7.2e-03 0.01 0 0 0 2.2e-02 2.7e-01 3.1e-01 1.8e-01
3 Adipose gene expression Hormad2 0.13 0.09 1.6e-04 0.02 0.03 0.02 0.02 2.4e-03 5.4e-04 1.6e-03 3.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.91.80.11.3-0.9
Area under the delay curve1.82.78.0-2.8-0.30.1
BMI with tail0.31.11.1-1.1-1.01.0
BMI without tail0.10.71.1-0.70.8-1.0
Body weight0.94.011.9-3.40.1-0.3
Weight adjusted by age0.51.33.1-1.80.8-0.6
Bone surface0.10.20.4-0.60.6-0.2
Bone volume0.20.40.7-0.30.8-0.6
Breakpoint value in progressive ratio session0.00.10.1-0.4-0.30.2
Number of licking bursts0.41.12.1-0.90.7-1.4
Context. condit. distance diff. score0.50.61.61.3-0.10.5
Locomotion velocity, session 13.03.44.91.2-1.92.2
Locomotion distance, session 10.20.30.60.40.70.2
Locomotion velocity, session 23.03.64.31.8-2.11.8
Locomotion distance, session 21.72.44.72.2-0.81.3
Locomotion velocity, session 30.10.10.20.30.50.4
Locomotion distance, session 30.30.30.6-0.4-0.50.7
Stereotopy head waving bouts, day 30.30.41.01.00.10.2
Stereotopy head waving duration, day 30.81.02.31.5-0.30.8
Locomotion velocity, session 70.30.30.60.0-0.60.8
Locomotion distance, session 70.60.71.50.6-0.61.2
Stereotopy head waving bouts, day 70.20.20.5-0.70.2-0.1
Stereotopy head waving duration, day 70.30.40.7-0.80.6-0.4
Locomotion velocity, session 82.83.45.92.4-1.61.4
Locomotion distance, session 82.43.59.73.1-0.20.9
Degree of sensitization distance1.51.64.42.1-0.40.5
Degree of sensitization stereotypy0.50.50.9-1.00.6-0.6
Conditioned locomotion0.50.51.1-0.41.0-0.6
Cocaine response after cond. corrected0.50.71.9-1.40.3-0.2
Cocaine response after cond. not corrected1.42.05.2-2.30.7-0.5
Cocaine response before conditioning0.20.30.6-0.80.4-0.1
Saline control response0.81.22.21.0-0.61.5
Bone: connectivity density0.30.51.3-0.21.1-0.3
Bone: cortical apparent density0.10.10.3-0.10.1-0.5
Bone: cortical area1.11.74.8-2.20.5-0.4
Bone: cortical porosity0.50.61.0-1.00.7-0.4
Bone: cortical porosity0.50.50.8-0.70.9-0.5
Bone: cortical thickness1.62.65.4-2.31.2-1.0
Bone: cortical thickness1.41.83.7-0.61.9-1.1
Bone: cortical tissue density0.00.10.2-0.10.0-0.5
Condit. Reinf. active minus inactive responses2.02.34.60.3-1.52.1
Condit. Reinf. active-inactive response ratio5.25.67.91.6-2.52.8
Condit. Reinf. active responses0.91.22.40.3-1.01.6
Condit. Reinf. inactive responses0.60.80.9-0.81.0-0.9
Incentive salience index mean1.21.63.0-0.4-1.21.7
Condit. Reinf. lever presses0.30.51.1-1.0-0.20.6
Condit. Reinf. active minus inactive responses0.20.30.70.90.20.2
Condit. Reinf. active-inactive response ratio0.10.10.3-0.1-0.10.6
Condit. Reinf. active responses0.71.02.31.5-0.10.9
Condit. Reinf. inactive responses0.91.33.11.8-0.20.8
Condit. Reinf. lever presses0.10.20.30.60.30.4
Condit. Reinf. lever reinforcers received0.60.81.41.2-0.01.0
Conditioned reinforcement - actives0.20.92.0-1.4-0.70.4
Conditioned reinforcement - inactives0.41.23.0-1.7-0.70.3
Conditioned locomotion0.50.72.0-1.4-0.1-0.4
Patch foraging indifference point 0 sec0.10.20.7-0.00.3-0.8
Patch foraging indifference point AUC0.30.60.80.8-0.60.9
Delay disc. indifference point, 0s delay2.83.29.2-3.00.4-0.3
Delay disc. indifference point, 16s delay1.01.52.3-1.5-1.30.7
Delay disc. indifference point, 2s delay4.04.410.6-3.31.3-1.1
Delay disc. indifference point, 24s delay1.21.94.2-2.0-0.80.9
Delay disc. indifference point, 4s delay2.22.46.5-2.60.6-0.4
Delay disc. indifference point, 8s delay0.20.30.8-0.9-0.40.2
Indifference point function ln k0.20.60.9-0.81.0-0.6
Indifference point function log k0.20.60.9-0.81.0-0.6
Patch foraging total patch changes 0 sec0.00.10.30.00.0-0.6
Patch foraging total patch changes 12 sec0.00.10.1-0.20.1-0.3
Patch foraging total patch changes 18 sec0.41.01.70.4-1.31.0
Patch foraging total patch changes 24 sec0.51.84.32.1-0.50.8
Patch foraging total patch changes 6 sec0.00.00.10.1-0.30.1
Patch foraging time to switch 0 sec0.10.51.30.30.5-1.1
Patch foraging water rate 0 sec0.20.71.3-0.4-0.81.1
Patch foraging water rate 12 sec0.10.20.7-0.20.10.8
Patch foraging water rate 18 sec1.12.54.7-0.22.2-1.7
Patch foraging water rate 24 sec0.40.60.80.7-0.70.9
Patch foraging water rate 6 sec0.10.20.4-0.20.6-0.2
Seeking ratio, delayed vs. immediate footshock0.10.10.40.6-0.10.0
Distance traveled before self-admin0.61.42.70.11.2-1.6
Distance traveled after self-admin1.42.43.5-0.71.9-1.9
Extensor digitorum longus weight1.14.512.2-3.50.8-0.9
Bone: elastic displacement0.91.22.20.01.2-1.5
Bone: elastic work2.02.63.8-0.91.8-2.0
Bone: endosteal estimation0.00.10.20.30.1-0.5
Bone: endosteal perimeter0.10.20.4-0.7-0.2-0.0
Epididymis fat weight0.31.63.9-2.00.5-0.9
Delta time in closed arm before/after self-admin0.40.30.60.80.60.2
Delta time in open arm before/after self-admin0.50.61.0-1.0-1.00.1
Diff in mean of infusions in LGA sessions0.10.10.20.20.4-0.4
Delay discount exponential model param1.92.67.82.80.2-0.1
Extinction: sum of active levers before priming0.71.11.4-0.6-1.21.2
Active lever presses in extinction session 60.80.81.8-1.30.6-0.5
Bone: final force0.10.10.2-0.10.3-0.5
Bone: final moment0.20.40.8-0.30.5-0.9
Food consumed during 24 hour testing period0.91.82.81.0-1.71.3
Glucose13.120.836.3-0.4-6.05.1
Heart weight1.01.62.5-0.4-1.41.6
Delay discount hyperbolic model param2.22.98.62.90.00.1
Intermittent access intake day 1-15 change0.31.73.6-0.2-1.91.2
Intermittent access intake escalation0.31.62.9-0.7-1.71.2
Intermittent access intake escalation 20.10.20.7-0.1-0.8-0.1
Intermitt. access day 1 inactive lever presses0.10.71.2-1.10.30.9
Intermitt. access day 15 inactive lever presses0.42.14.2-0.5-1.42.1
Intermitt. access escalation Index0.82.43.71.2-1.51.9
Intermittent access day 1 total infusions0.51.62.5-1.61.0-1.2
Intermittent access day 15 total infusions0.41.02.8-1.7-0.60.0
Intermittent access terminal intake (last 3 days)0.30.61.6-1.3-0.2-0.3
Intermittent access total infusions0.81.02.6-1.60.0-0.5
Intermittent access day 1 locomotion0.40.71.40.10.8-1.2
Intermittent access day 15 total locomotion0.31.23.4-1.8-0.5-0.0
Intermittent access total locomotion0.60.71.9-1.4-0.4-0.0
Intermittent access standard deviation0.10.30.5-0.40.6-0.7
Left kidney weight0.43.03.7-1.91.9-1.4
Right kidney weight1.28.210.5-2.53.2-2.8
Cocaine induced anxiety0.30.81.3-0.9-1.20.6
Post-drug Anxiety0.91.01.4-1.2-1.00.7
Baseline Anxiety0.00.00.1-0.2-0.10.3
Tail length0.95.05.7-2.41.9-2.4
Length with tail1.25.39.2-3.01.6-2.0
Length without tail0.31.54.5-2.10.1-0.3
Times rat made contact with spout3.33.84.91.9-2.21.8
Lifetime Intake0.91.12.5-1.60.3-0.8
Liver weight, left0.71.32.6-0.51.6-1.0
Liver weight, right0.30.61.10.31.0-0.7
Locomotor activity0.40.61.30.4-1.10.5
Locomotor testing distance0.61.41.8-1.41.0-1.1
Locomotor testing rearing0.20.61.8-1.3-0.20.1
Locomotion in novel chamber0.50.71.4-0.21.2-0.8
Locomotion in novel chamber post-restriction0.92.63.31.8-1.31.7
Fecal boli incidents, locomotor time 10.10.30.40.6-0.40.5
Change in fecal boli incidents, locomotor task1.61.71.81.4-1.31.2
Time >=10cm from walls, locomotor time 10.10.10.10.3-0.4-0.0
Bouts of movement, locomotor time 11.11.42.50.0-1.31.6
Total resting periods, locomotor time 11.82.14.0-0.0-1.52.0
Rest time, locomotor task time 10.40.71.20.5-0.71.1
Distance moved, locomotor task time 10.51.43.2-0.01.0-1.8
Vertical activity count, locomotor time 10.21.12.40.70.5-1.5
Time >=10cm from walls, locomotor time 20.10.40.50.7-0.60.5
Bouts of movement, locomotor time 20.20.50.8-0.80.10.9
Total resting periods, locomotor time 20.20.71.5-0.8-0.21.2
Rest time, locomotor task time 20.30.50.80.9-0.40.7
Distance moved, locomotor task time 20.10.10.30.10.2-0.5
Vertical activity count, locomotor time 20.10.20.3-0.30.3-0.6
Light reinforcement 10.20.71.7-1.30.7-0.1
Light reinforcement 20.51.12.1-0.21.1-1.5
Bone: marrow area0.00.10.20.30.1-0.4
Bone: maximum diameter0.81.72.6-1.6-1.30.9
Bone: maximum force0.20.50.9-0.10.7-1.0
Bone: maximum moment0.51.01.9-0.31.0-1.4
Mean time between licks in bursts0.42.42.91.4-1.71.5
Mean num. licks in bursts1.85.06.32.1-2.12.5
Cd content in liver0.40.40.90.1-1.00.5
Co content in liver0.50.61.6-1.30.5-0.2
Cu content in liver0.20.30.5-0.5-0.30.7
Fe content in liver0.91.12.10.9-0.61.5
K content in liver3.53.48.5-2.91.1-0.7
Mg content in liver1.92.16.2-2.50.20.0
Mn content in liver0.40.40.4-0.60.6-0.6
Na content in liver2.02.24.1-2.0-0.91.3
Rb content in liver0.40.40.7-0.80.3-0.7
Se content in liver1.72.05.5-2.30.5-0.6
Sr content in liver0.60.51.0-0.5-1.00.4
Zn content in liver0.30.30.4-0.60.5-0.5
Bone: minimum diameter0.10.10.3-0.00.5-0.3
Time in familiar zone, hab. session 10.91.02.31.50.4-0.8
Time in novel zone, hab. session 10.60.71.8-1.30.4-0.4
Total zone transitions, hab. session 10.50.81.81.3-0.40.5
Total locomotion distance, hab. session 10.10.10.20.2-0.20.4
Locomotion velocity, hab. session 10.50.81.50.4-0.81.2
Time in familiar zone, hab. session 20.91.02.81.70.3-0.2
Time in novel zone, hab. session 20.40.51.3-1.1-0.2-0.2
Total zone transitions, hab. session 20.30.40.80.2-0.70.9
Total locomotion distance, hab. session 20.60.81.40.2-1.21.0
Locomotion velocity, hab. session 20.50.71.1-0.2-1.11.0
Novel to familiar place preference ratio1.21.52.2-0.6-1.41.5
Novelty place preference1.11.52.1-0.6-1.41.4
Time in novel zone, NPP test1.11.31.9-0.5-1.31.4
Total zone transitions, NPP test0.20.30.7-0.40.8-0.0
Total locomotion distance, NPP test0.10.10.2-0.50.30.2
Locomotion velocity, NPP test0.20.20.6-0.80.30.3
Intraocular pressure1.11.82.61.2-1.61.2
Delta distance traveled before/after self-admin0.20.30.6-0.80.40.0
Delta ambulatory time before/after self-admin0.10.10.1-0.40.4-0.0
Parametrial fat weight3.37.712.31.0-3.53.1
Pavlov. Cond. lever latency0.10.10.1-0.1-0.40.3
Pavlov. Cond. magazine entry latency0.50.61.91.40.2-0.0
Pavlov. Cond. change in total contacts0.10.20.2-0.3-0.50.4
Pavlov. Cond. index score0.20.30.70.80.4-0.1
Pavlov. Cond. latency score0.30.30.70.80.5-0.3
Pavlov. Cond. lever contacts0.10.10.10.30.4-0.2
Pavlov. Cond. magazine entry number0.50.61.5-1.20.2-0.6
Pavlov. Cond. intertrial magazine entries1.51.83.1-1.71.3-0.7
Pavlov. Cond. lever-magazine prob. diff.0.20.30.60.80.5-0.1
Pavlov. Cond. response bias0.00.00.10.10.30.2
Pavlov. Cond. lever latency2.53.55.9-2.41.4-1.7
Pavlov. Cond. magazine entry latency0.10.10.20.20.3-0.4
Pavlov. Cond. change in total contacts0.41.02.21.5-0.50.7
Pavlov. Cond. index score0.61.02.21.5-0.50.7
Pavlov. Cond. latency score0.50.82.11.5-0.30.5
Pavlov. Cond. lever contacts1.92.95.12.2-1.11.5
Pavlov. Cond. magazine entry number0.20.30.7-0.90.4-0.0
Pavlov. Cond. intertrial magazine entries0.10.30.6-0.4-0.30.8
Pavlov. Cond. lever-magazine prob. diff.0.60.92.31.5-0.40.5
Pavlov. Cond. response bias1.31.83.31.8-1.01.1
Time in closed arm before self-admin0.40.81.30.30.9-1.2
Time in closed arm after self-admin0.60.61.20.51.1-0.7
Time in open arm before self-admin0.00.00.1-0.3-0.00.2
Time in open arm after self-admin1.21.32.5-0.1-1.61.2
Bone: periosteal estimation0.20.40.9-0.90.4-0.5
Bone: periosteal perimeter0.61.13.3-1.80.00.1
Bone: post-yield work0.20.30.50.6-0.0-0.7
Progressive ratio test 1 active lever presses0.50.92.7-1.60.1-0.0
Progressive ratio test 1 breakpoint0.50.92.8-1.70.00.1
Progressive ratio test 1 inactive lever presses0.40.92.6-1.6-0.20.4
Progressive ratio test 2 active lever presses0.30.40.9-1.0-0.6-0.2
Progressive ratio test 2 breakpoint0.30.40.7-0.9-0.6-0.1
Progressive ratio test 2 inactive lever presses0.41.31.7-1.3-1.30.8
Incentive Sensitization - Responses0.10.20.5-0.1-0.7-0.3
Incentive Sensitization - Breakpoint0.10.20.5-0.0-0.7-0.3
Sum of active levers in priming session hrs 5-60.50.51.5-1.20.20.0
Progressive ratio0.30.81.80.10.8-1.3
Food seeking constrained by brief footshock3.44.25.5-2.11.6-2.3
Seeking ratio, punishment vs. effort0.30.72.0-1.40.40.3
Retroperitoneal fat weight0.94.26.20.4-2.52.5
Reaction time number correct0.31.02.01.4-0.90.6
Reaction time mean minus median0.10.71.60.5-1.30.6
Reaction time mean minus median AUC0.00.20.4-0.4-0.60.3
Reaction time num false alarms0.61.11.8-1.30.8-0.9
Reaction time num false alarms AUC0.81.82.1-1.31.3-1.5
Reaction time trials correct on left0.31.02.01.4-0.90.6
Reaction time trials on left0.31.02.01.4-0.80.6
Reaction time mean0.00.10.30.1-0.50.0
Reaction time mean AUC0.00.00.1-0.0-0.3-0.1
Median of all reaction times0.00.00.00.0-0.2-0.1
Reaction time omissions0.00.10.10.2-0.00.4
Reaction time false alarm rate2.43.44.2-2.11.7-1.7
Reaction time premature initiation rate0.60.91.61.01.2-0.2
Reaction time premature initiations0.30.92.51.60.50.2
Std. dev. reaction times0.20.61.50.5-1.20.4
Reaction time trials completed0.31.02.01.4-0.80.6
Reaction time trials AUC0.20.81.51.2-0.70.5
Run reversals in cocaine runway, females0.10.10.20.5-0.1-0.0
Run reversals in cocaine runway, males0.10.10.2-0.0-0.1-0.4
Latency to leave start box in cocaine runway0.20.30.4-0.60.6-0.4
Latency to leave start box in cocaine runway, F0.91.11.3-1.01.1-1.0
Latency to leave start box in cocaine runway, M0.30.20.60.0-0.40.8
Std. dev. time between licks in bursts0.30.51.41.2-0.10.5
Total sessions with >9 infusions0.70.81.6-0.41.3-0.9
Short access day 1 total inactive lever presses0.40.92.0-1.40.4-0.7
Short access day 10 total inactive lever presses0.10.30.5-0.70.70.3
Short access day 1 total infusions0.61.22.3-0.61.5-1.0
Short access day 10 total infusions0.30.60.9-0.00.9-1.0
Short access total infusions0.71.01.3-0.71.1-1.1
Short access day 1 locomotion1.52.64.10.31.9-2.0
Short access day 10 total locomotion0.41.61.71.31.3-1.3
Short access total locomotion1.21.82.51.11.6-1.3
One hour access (0.3 mA shock)0.30.30.5-0.7-0.6-0.2
Compulsive drug intake0.30.40.91.00.40.2
One hour access (shock baseline)0.41.12.7-1.6-0.8-0.0
Social response proportion1.62.03.41.2-1.81.1
Social responses1.62.13.70.9-1.91.4
Social time0.71.12.21.5-0.90.4
Soleus weight1.44.15.9-1.71.9-2.4
Bone: stiffness0.00.10.2-0.0-0.00.5
Tibialis anterior weight0.41.43.9-2.00.1-0.6
Time to tail flick, vehicle, before self-admin0.30.40.9-0.00.6-0.9
Time to tail flick, vehicle, after self-admin0.00.10.2-0.10.40.0
Time to tail flick, test, before self-admin0.10.10.2-0.10.5-0.2
Time to tail flick, test, after self-admin0.50.61.2-1.10.4-0.6
Delta time to tail flick, vehicle, before/after SA0.20.30.70.2-0.30.8
Delta time to tail flick, test, before/after SA0.20.30.6-0.2-0.80.4
Tibia length1.23.45.4-0.62.1-2.3
Ambulatory time before self-admin0.61.83.5-0.21.3-1.9
Ambulatory time after self-admin1.11.82.9-0.31.6-1.7
Bone: tissue strength0.60.61.21.10.1-0.8
Total heroin consumption0.10.10.10.30.2-0.2
Bone: trabecular number0.71.42.5-0.61.6-1.1
Bone: trabecular spacing0.20.40.90.3-1.00.2
Bone: trabecular thickness0.81.12.2-0.11.5-1.1
Bone: trabecular tissue density0.51.01.31.0-1.20.7
Water consumed over 24 hours1.32.65.42.3-1.50.4
Number of responses in last shaping day0.20.20.60.0-0.10.8