Hormad2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb alternative TSS NM_001017501.1 0.3 0.17 2.8e-03 0.04 0.08 0.05 0.05 3.9e-02 5.2e-03 2.7e-02 2.2e-02
2 Liver gene expression Hormad2 0.06 0.06 7.2e-03 0.01 0 0 0 2.2e-02 2.7e-01 3.1e-01 1.6e-01
3 Adipose gene expression Hormad2 0.13 0.09 1.6e-04 0.02 0.03 0.02 0.02 2.4e-03 5.4e-04 1.6e-03 3.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.91.80.1-1.3-0.9
Area under the delay curve2.32.78.0-2.80.30.1
BMI with tail0.31.11.1-1.11.01.0
BMI without tail0.20.71.1-0.7-0.8-1.0
Body weight0.94.011.9-3.4-0.1-0.3
Weight adjusted by age0.91.33.1-1.8-0.8-0.6
Bone surface0.10.20.4-0.6-0.6-0.2
Bone volume0.20.40.7-0.3-0.8-0.6
Breakpoint value in progressive ratio session0.10.10.1-0.40.30.2
Number of licking bursts0.71.12.1-0.9-0.7-1.4
Context. condit. distance diff. score0.50.61.61.30.10.5
Locomotion velocity, session 13.13.44.91.21.92.2
Locomotion distance, session 10.20.30.60.4-0.70.2
Locomotion velocity, session 23.13.64.31.82.11.8
Locomotion distance, session 21.72.44.72.20.81.3
Locomotion velocity, session 30.10.10.20.3-0.50.4
Locomotion distance, session 30.30.30.6-0.40.50.7
Stereotopy head waving bouts, day 30.30.41.01.0-0.10.2
Stereotopy head waving duration, day 30.81.02.31.50.30.8
Locomotion velocity, session 70.30.30.60.00.60.8
Locomotion distance, session 70.60.71.50.60.61.2
Stereotopy head waving bouts, day 70.20.20.5-0.7-0.2-0.1
Stereotopy head waving duration, day 70.30.40.7-0.8-0.6-0.4
Locomotion velocity, session 82.83.45.92.41.61.4
Locomotion distance, session 82.43.59.73.10.20.9
Degree of sensitization distance1.61.64.42.10.40.5
Degree of sensitization stereotypy0.50.50.9-1.0-0.6-0.6
Conditioned locomotion0.50.51.1-0.4-1.0-0.6
Cocaine response after cond. corrected0.60.71.9-1.4-0.3-0.2
Cocaine response after cond. not corrected1.72.05.2-2.3-0.7-0.5
Cocaine response before conditioning0.20.30.6-0.8-0.4-0.1
Saline control response0.91.22.21.00.61.5
Bone: connectivity density0.30.51.3-0.2-1.1-0.3
Bone: cortical apparent density0.10.10.3-0.1-0.1-0.5
Bone: cortical area1.11.74.8-2.2-0.5-0.4
Bone: cortical porosity0.50.61.0-1.0-0.7-0.4
Bone: cortical porosity0.50.50.8-0.7-0.9-0.5
Bone: cortical thickness1.62.65.4-2.3-1.2-1.0
Bone: cortical thickness1.51.83.7-0.6-1.9-1.1
Bone: cortical tissue density0.10.10.2-0.1-0.0-0.5
Condit. Reinf. active minus inactive responses2.02.34.60.31.52.1
Condit. Reinf. active-inactive response ratio5.25.67.91.62.52.8
Condit. Reinf. active responses0.91.22.40.31.01.6
Condit. Reinf. inactive responses0.60.80.9-0.8-1.0-0.9
Incentive salience index mean1.31.63.0-0.41.21.7
Condit. Reinf. lever presses0.40.51.1-1.00.20.6
Condit. Reinf. active minus inactive responses0.20.30.70.9-0.20.2
Condit. Reinf. active-inactive response ratio0.10.10.3-0.10.10.6
Condit. Reinf. active responses0.71.02.31.50.10.9
Condit. Reinf. inactive responses1.01.33.11.80.20.8
Condit. Reinf. lever presses0.10.20.30.6-0.30.4
Condit. Reinf. lever reinforcers received0.60.81.41.20.01.0
Conditioned reinforcement - actives0.50.92.0-1.40.70.4
Conditioned reinforcement - inactives0.81.23.0-1.70.70.3
Conditioned locomotion0.60.72.0-1.40.1-0.4
Patch foraging indifference point 0 sec0.10.20.7-0.0-0.3-0.8
Patch foraging indifference point AUC0.40.60.80.80.60.9
Delay disc. indifference point, 0s delay2.93.29.2-3.0-0.4-0.3
Delay disc. indifference point, 16s delay1.31.52.3-1.51.30.7
Delay disc. indifference point, 2s delay4.04.410.6-3.3-1.3-1.1
Delay disc. indifference point, 24s delay1.71.94.2-2.00.80.9
Delay disc. indifference point, 4s delay2.32.46.5-2.6-0.6-0.4
Delay disc. indifference point, 8s delay0.30.30.8-0.90.40.2
Indifference point function ln k0.40.60.9-0.8-1.0-0.6
Indifference point function log k0.40.60.9-0.8-1.0-0.6
Patch foraging total patch changes 0 sec0.10.10.30.0-0.0-0.6
Patch foraging total patch changes 12 sec0.00.10.1-0.2-0.1-0.3
Patch foraging total patch changes 18 sec0.61.01.70.41.31.0
Patch foraging total patch changes 24 sec1.01.84.32.10.50.8
Patch foraging total patch changes 6 sec0.00.00.10.10.30.1
Patch foraging time to switch 0 sec0.30.51.30.3-0.5-1.1
Patch foraging water rate 0 sec0.30.71.3-0.40.81.1
Patch foraging water rate 12 sec0.10.20.7-0.2-0.10.8
Patch foraging water rate 18 sec1.62.54.7-0.2-2.2-1.7
Patch foraging water rate 24 sec0.50.60.80.70.70.9
Patch foraging water rate 6 sec0.10.20.4-0.2-0.6-0.2
Seeking ratio, delayed vs. immediate footshock0.10.10.40.60.10.0
Distance traveled before self-admin1.11.42.70.1-1.2-1.6
Distance traveled after self-admin2.02.43.5-0.7-1.9-1.9
Extensor digitorum longus weight1.14.512.2-3.5-0.8-0.9
Bone: elastic displacement1.01.22.20.0-1.2-1.5
Bone: elastic work2.02.63.8-0.9-1.8-2.0
Bone: endosteal estimation0.00.10.20.3-0.1-0.5
Bone: endosteal perimeter0.10.20.4-0.70.2-0.0
Epididymis fat weight0.51.63.9-2.0-0.5-0.9
Delta time in closed arm before/after self-admin0.40.30.60.8-0.60.2
Delta time in open arm before/after self-admin0.60.61.0-1.01.00.1
Diff in mean of infusions in LGA sessions0.10.10.20.2-0.4-0.4
Delay discount exponential model param2.32.67.82.8-0.2-0.1
Extinction: sum of active levers before priming1.01.11.4-0.61.21.2
Active lever presses in extinction session 60.80.81.8-1.3-0.6-0.5
Bone: final force0.10.10.2-0.1-0.3-0.5
Bone: final moment0.20.40.8-0.3-0.5-0.9
Food consumed during 24 hour testing period1.31.82.81.01.71.3
Glucose13.220.836.3-0.46.05.1
Heart weight1.01.62.5-0.41.41.6
Delay discount hyperbolic model param2.62.98.62.9-0.00.1
Intermittent access intake day 1-15 change0.81.73.6-0.21.91.2
Intermittent access intake escalation0.81.62.9-0.71.71.2
Intermittent access intake escalation 20.20.20.7-0.10.8-0.1
Intermitt. access day 1 inactive lever presses0.20.71.2-1.1-0.30.9
Intermitt. access day 15 inactive lever presses1.02.14.2-0.51.42.1
Intermitt. access escalation Index1.72.43.71.21.51.9
Intermittent access day 1 total infusions1.01.62.5-1.6-1.0-1.2
Intermittent access day 15 total infusions0.71.02.8-1.70.60.0
Intermittent access terminal intake (last 3 days)0.50.61.6-1.30.2-0.3
Intermittent access total infusions0.81.02.6-1.6-0.0-0.5
Intermittent access day 1 locomotion0.50.71.40.1-0.8-1.2
Intermittent access day 15 total locomotion0.71.23.4-1.80.5-0.0
Intermittent access total locomotion0.60.71.9-1.40.4-0.0
Intermittent access standard deviation0.20.30.5-0.4-0.6-0.7
Left kidney weight0.73.03.7-1.9-1.9-1.4
Right kidney weight1.88.210.5-2.5-3.2-2.8
Cocaine induced anxiety0.60.81.3-0.91.20.6
Post-drug Anxiety0.91.01.4-1.21.00.7
Baseline Anxiety0.00.00.1-0.20.10.3
Tail length1.35.05.7-2.4-1.9-2.4
Length with tail1.25.39.2-3.0-1.6-2.0
Length without tail0.51.54.5-2.1-0.1-0.3
Times rat made contact with spout3.33.84.91.92.21.8
Lifetime Intake0.91.12.5-1.6-0.3-0.8
Liver weight, left0.81.32.6-0.5-1.6-1.0
Liver weight, right0.30.61.10.3-1.0-0.7
Locomotor activity0.40.61.30.41.10.5
Locomotor testing distance0.81.41.8-1.4-1.0-1.1
Locomotor testing rearing0.30.61.8-1.30.20.1
Locomotion in novel chamber0.50.71.4-0.2-1.2-0.8
Locomotion in novel chamber post-restriction1.62.63.31.81.31.7
Fecal boli incidents, locomotor time 10.20.30.40.60.40.5
Change in fecal boli incidents, locomotor task1.71.71.81.41.31.2
Time >=10cm from walls, locomotor time 10.10.10.10.30.4-0.0
Bouts of movement, locomotor time 11.21.42.50.01.31.6
Total resting periods, locomotor time 11.92.14.0-0.01.52.0
Rest time, locomotor task time 10.50.71.20.50.71.1
Distance moved, locomotor task time 10.91.43.2-0.0-1.0-1.8
Vertical activity count, locomotor time 10.41.12.40.7-0.5-1.5
Time >=10cm from walls, locomotor time 20.30.40.50.70.60.5
Bouts of movement, locomotor time 20.30.50.8-0.8-0.10.9
Total resting periods, locomotor time 20.40.71.5-0.80.21.2
Rest time, locomotor task time 20.40.50.80.90.40.7
Distance moved, locomotor task time 20.10.10.30.1-0.2-0.5
Vertical activity count, locomotor time 20.10.20.3-0.3-0.3-0.6
Light reinforcement 10.30.71.7-1.3-0.7-0.1
Light reinforcement 20.71.12.1-0.2-1.1-1.5
Bone: marrow area0.00.10.20.3-0.1-0.4
Bone: maximum diameter0.91.72.6-1.61.30.9
Bone: maximum force0.30.50.9-0.1-0.7-1.0
Bone: maximum moment0.61.01.9-0.3-1.0-1.4
Mean time between licks in bursts1.02.42.91.41.71.5
Mean num. licks in bursts3.25.06.32.12.12.5
Cd content in liver0.40.40.90.11.00.5
Co content in liver0.50.61.6-1.3-0.5-0.2
Cu content in liver0.20.30.5-0.50.30.7
Fe content in liver0.91.12.10.90.61.5
K content in liver3.63.48.5-2.9-1.1-0.7
Mg content in liver2.12.16.2-2.5-0.20.0
Mn content in liver0.40.40.4-0.6-0.6-0.6
Na content in liver2.12.24.1-2.00.91.3
Rb content in liver0.40.40.7-0.8-0.3-0.7
Se content in liver1.72.05.5-2.3-0.5-0.6
Sr content in liver0.60.51.0-0.51.00.4
Zn content in liver0.30.30.4-0.6-0.5-0.5
Bone: minimum diameter0.10.10.3-0.0-0.5-0.3
Time in familiar zone, hab. session 11.11.02.31.5-0.4-0.8
Time in novel zone, hab. session 10.70.71.8-1.3-0.4-0.4
Total zone transitions, hab. session 10.50.81.81.30.40.5
Total locomotion distance, hab. session 10.10.10.20.20.20.4
Locomotion velocity, hab. session 10.50.81.50.40.81.2
Time in familiar zone, hab. session 20.91.02.81.7-0.3-0.2
Time in novel zone, hab. session 20.50.51.3-1.10.2-0.2
Total zone transitions, hab. session 20.30.40.80.20.70.9
Total locomotion distance, hab. session 20.60.81.40.21.21.0
Locomotion velocity, hab. session 20.50.71.1-0.21.11.0
Novel to familiar place preference ratio1.41.52.2-0.61.41.5
Novelty place preference1.41.52.1-0.61.41.4
Time in novel zone, NPP test1.21.31.9-0.51.31.4
Total zone transitions, NPP test0.20.30.7-0.4-0.8-0.0
Total locomotion distance, NPP test0.10.10.2-0.5-0.30.2
Locomotion velocity, NPP test0.20.20.6-0.8-0.30.3
Intraocular pressure1.21.82.61.21.61.2
Delta distance traveled before/after self-admin0.30.30.6-0.8-0.40.0
Delta ambulatory time before/after self-admin0.10.10.1-0.4-0.4-0.0
Parametrial fat weight3.37.712.31.03.53.1
Pavlov. Cond. lever latency0.10.10.1-0.10.40.3
Pavlov. Cond. magazine entry latency0.50.61.91.4-0.2-0.0
Pavlov. Cond. change in total contacts0.10.20.2-0.30.50.4
Pavlov. Cond. index score0.20.30.70.8-0.4-0.1
Pavlov. Cond. latency score0.30.30.70.8-0.5-0.3
Pavlov. Cond. lever contacts0.10.10.10.3-0.4-0.2
Pavlov. Cond. magazine entry number0.50.61.5-1.2-0.2-0.6
Pavlov. Cond. intertrial magazine entries1.51.83.1-1.7-1.3-0.7
Pavlov. Cond. lever-magazine prob. diff.0.20.30.60.8-0.5-0.1
Pavlov. Cond. response bias0.00.00.10.1-0.30.2
Pavlov. Cond. lever latency2.63.55.9-2.4-1.4-1.7
Pavlov. Cond. magazine entry latency0.10.10.20.2-0.3-0.4
Pavlov. Cond. change in total contacts0.61.02.21.50.50.7
Pavlov. Cond. index score0.81.02.21.50.50.7
Pavlov. Cond. latency score0.60.82.11.50.30.5
Pavlov. Cond. lever contacts2.12.95.12.21.11.5
Pavlov. Cond. magazine entry number0.20.30.7-0.9-0.4-0.0
Pavlov. Cond. intertrial magazine entries0.20.30.6-0.40.30.8
Pavlov. Cond. lever-magazine prob. diff.0.70.92.31.50.40.5
Pavlov. Cond. response bias1.31.83.31.81.01.1
Time in closed arm before self-admin0.60.81.30.3-0.9-1.2
Time in closed arm after self-admin0.60.61.20.5-1.1-0.7
Time in open arm before self-admin0.00.00.1-0.30.00.2
Time in open arm after self-admin1.21.32.5-0.11.61.2
Bone: periosteal estimation0.20.40.9-0.9-0.4-0.5
Bone: periosteal perimeter0.61.13.3-1.8-0.00.1
Bone: post-yield work0.20.30.50.60.0-0.7
Progressive ratio test 1 active lever presses0.70.92.7-1.6-0.1-0.0
Progressive ratio test 1 breakpoint0.80.92.8-1.7-0.00.1
Progressive ratio test 1 inactive lever presses0.60.92.6-1.60.20.4
Progressive ratio test 2 active lever presses0.40.40.9-1.00.6-0.2
Progressive ratio test 2 breakpoint0.30.40.7-0.90.6-0.1
Progressive ratio test 2 inactive lever presses0.81.31.7-1.31.30.8
Incentive Sensitization - Responses0.20.20.5-0.10.7-0.3
Incentive Sensitization - Breakpoint0.20.20.5-0.00.7-0.3
Sum of active levers in priming session hrs 5-60.50.51.5-1.2-0.20.0
Progressive ratio0.50.81.80.1-0.8-1.3
Food seeking constrained by brief footshock3.44.25.5-2.1-1.6-2.3
Seeking ratio, punishment vs. effort0.50.72.0-1.4-0.40.3
Retroperitoneal fat weight1.04.26.20.42.52.5
Reaction time number correct0.51.02.01.40.90.6
Reaction time mean minus median0.30.71.60.51.30.6
Reaction time mean minus median AUC0.10.20.4-0.40.60.3
Reaction time num false alarms0.81.11.8-1.3-0.8-0.9
Reaction time num false alarms AUC1.21.82.1-1.3-1.3-1.5
Reaction time trials correct on left0.51.02.01.40.90.6
Reaction time trials on left0.51.02.01.40.80.6
Reaction time mean0.10.10.30.10.50.0
Reaction time mean AUC0.00.00.1-0.00.3-0.1
Median of all reaction times0.00.00.00.00.2-0.1
Reaction time omissions0.00.10.10.20.00.4
Reaction time false alarm rate2.43.44.2-2.1-1.7-1.7
Reaction time premature initiation rate0.60.91.61.0-1.2-0.2
Reaction time premature initiations0.50.92.51.6-0.50.2
Std. dev. reaction times0.30.61.50.51.20.4
Reaction time trials completed0.51.02.01.40.80.6
Reaction time trials AUC0.40.81.51.20.70.5
Run reversals in cocaine runway, females0.10.10.20.50.1-0.0
Run reversals in cocaine runway, males0.10.10.2-0.00.1-0.4
Latency to leave start box in cocaine runway0.30.30.4-0.6-0.6-0.4
Latency to leave start box in cocaine runway, F1.01.11.3-1.0-1.1-1.0
Latency to leave start box in cocaine runway, M0.30.20.60.00.40.8
Std. dev. time between licks in bursts0.40.51.41.20.10.5
Total sessions with >9 infusions0.70.81.6-0.4-1.3-0.9
Short access day 1 total inactive lever presses0.70.92.0-1.4-0.4-0.7
Short access day 10 total inactive lever presses0.10.30.5-0.7-0.70.3
Short access day 1 total infusions0.91.22.3-0.6-1.5-1.0
Short access day 10 total infusions0.50.60.9-0.0-0.9-1.0
Short access total infusions0.81.01.3-0.7-1.1-1.1
Short access day 1 locomotion2.12.64.10.3-1.9-2.0
Short access day 10 total locomotion0.91.61.71.3-1.3-1.3
Short access total locomotion1.51.82.51.1-1.6-1.3
One hour access (0.3 mA shock)0.30.30.5-0.70.6-0.2
Compulsive drug intake0.30.40.91.0-0.40.2
One hour access (shock baseline)0.71.12.7-1.60.8-0.0
Social response proportion1.82.03.41.21.81.1
Social responses1.62.13.70.91.91.4
Social time0.81.12.21.50.90.4
Soleus weight1.44.15.9-1.7-1.9-2.4
Bone: stiffness0.00.10.2-0.00.00.5
Tibialis anterior weight0.41.43.9-2.0-0.1-0.6
Time to tail flick, vehicle, before self-admin0.40.40.9-0.0-0.6-0.9
Time to tail flick, vehicle, after self-admin0.10.10.2-0.1-0.40.0
Time to tail flick, test, before self-admin0.10.10.2-0.1-0.5-0.2
Time to tail flick, test, after self-admin0.60.61.2-1.1-0.4-0.6
Delta time to tail flick, vehicle, before/after SA0.30.30.70.20.30.8
Delta time to tail flick, test, before/after SA0.30.30.6-0.20.80.4
Tibia length1.23.45.4-0.6-2.1-2.3
Ambulatory time before self-admin1.21.83.5-0.2-1.3-1.9
Ambulatory time after self-admin1.51.82.9-0.3-1.6-1.7
Bone: tissue strength0.60.61.21.1-0.1-0.8
Total heroin consumption0.10.10.10.3-0.2-0.2
Bone: trabecular number0.81.42.5-0.6-1.6-1.1
Bone: trabecular spacing0.30.40.90.31.00.2
Bone: trabecular thickness0.91.12.2-0.1-1.5-1.1
Bone: trabecular tissue density0.61.01.31.01.20.7
Water consumed over 24 hours1.92.65.42.31.50.4
Number of responses in last shaping day0.20.20.60.00.10.8