H2az1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression H2az1 0.04 0.03 1.5e-03 0.01 0.02 0.02 0.01 2.3e-03 5.9e-04 7.0e-04 2.5e-03
2 BLA alternative polyA XM_063282425.1 0.07 0.04 3.6e-04 0.05 0.04 0.06 0.04 9.8e-04 3.1e-03 4.9e-04 5.8e-03
3 BLA alternative polyA NM_022674.2 0.07 0.04 4.0e-04 0.04 0.04 0.04 0.03 3.9e-03 4.0e-03 2.0e-03 1.2e-02
4 BLA gene expression H2az1 0.18 0.09 1.7e-04 0.01 0.04 0.05 0.04 9.1e-02 4.6e-03 1.9e-03 4.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.11.92.3-1.21.5-1.5-1.3
Area under the delay curve0.30.30.7-0.60.3-0.30.8
BMI with tail1.24.16.92.6-2.22.10.3
BMI without tail1.33.97.62.8-2.01.90.4
Body weight1.46.211.93.4-2.52.5-0.8
Weight adjusted by age0.50.81.70.0-0.90.81.3
Bone surface0.30.50.7-0.90.7-0.7-0.2
Bone volume0.20.30.4-0.70.6-0.6-0.4
Breakpoint value in progressive ratio session1.01.13.10.20.8-0.9-1.8
Number of licking bursts0.30.51.30.6-0.30.3-1.1
Context. condit. distance diff. score0.60.71.2-0.60.8-0.8-1.1
Locomotion velocity, session 12.02.13.31.3-1.81.8-0.4
Locomotion distance, session 11.21.62.70.8-1.61.6-0.6
Locomotion velocity, session 20.10.10.2-0.2-0.00.0-0.5
Locomotion distance, session 21.41.93.40.8-1.81.80.6
Locomotion velocity, session 32.42.74.71.2-2.22.1-0.2
Locomotion distance, session 30.20.30.40.2-0.70.60.3
Stereotopy head waving bouts, day 31.72.02.71.7-1.61.60.4
Stereotopy head waving duration, day 31.82.13.31.8-1.61.6-0.2
Locomotion velocity, session 70.70.70.90.9-1.00.9-0.5
Locomotion distance, session 70.10.10.2-0.0-0.50.4-0.3
Stereotopy head waving bouts, day 71.41.62.10.8-1.41.51.3
Stereotopy head waving duration, day 72.12.53.40.9-1.81.91.6
Locomotion velocity, session 80.10.10.3-0.0-0.50.5-0.0
Locomotion distance, session 80.50.81.00.5-1.00.9-1.0
Degree of sensitization distance0.70.71.3-0.50.8-0.9-1.1
Degree of sensitization stereotypy0.80.91.50.4-0.91.01.2
Conditioned locomotion0.20.20.6-0.8-0.10.00.5
Cocaine response after cond. corrected0.20.30.8-0.10.5-0.4-0.9
Cocaine response after cond. not corrected0.80.91.2-0.71.1-1.1-1.0
Cocaine response before conditioning0.10.10.2-0.40.2-0.20.3
Saline control response2.93.96.21.0-2.02.02.5
Bone: connectivity density2.13.24.1-2.01.9-1.9-1.3
Bone: cortical apparent density0.10.10.50.70.00.0-0.2
Bone: cortical area0.50.82.51.6-0.60.6-0.1
Bone: cortical porosity0.91.01.60.7-1.31.30.2
Bone: cortical porosity1.31.42.21.1-1.51.50.3
Bone: cortical thickness0.50.81.91.2-0.0-0.0-1.4
Bone: cortical thickness0.30.40.90.70.1-0.1-0.9
Bone: cortical tissue density0.10.20.60.8-0.00.1-0.2
Condit. Reinf. active minus inactive responses1.82.03.31.8-1.51.50.3
Condit. Reinf. active-inactive response ratio3.13.37.62.8-1.61.6-0.3
Condit. Reinf. active responses0.81.01.20.9-1.11.10.8
Condit. Reinf. inactive responses0.50.61.3-1.10.2-0.21.0
Incentive salience index mean0.91.12.21.5-1.01.00.1
Condit. Reinf. lever presses0.10.10.10.4-0.30.30.1
Condit. Reinf. active minus inactive responses0.10.10.40.60.1-0.00.2
Condit. Reinf. active-inactive response ratio0.30.40.80.60.4-0.4-0.9
Condit. Reinf. active responses0.10.20.60.8-0.10.10.3
Condit. Reinf. inactive responses0.50.70.80.7-0.90.90.8
Condit. Reinf. lever presses0.10.20.20.40.4-0.4-0.4
Condit. Reinf. lever reinforcers received0.10.10.30.60.1-0.10.0
Conditioned reinforcement - actives0.61.01.40.4-1.21.21.1
Conditioned reinforcement - inactives0.30.51.7-0.1-0.30.31.3
Conditioned locomotion1.01.33.8-1.90.7-0.80.5
Patch foraging indifference point 0 sec0.30.51.3-1.10.5-0.60.4
Patch foraging indifference point AUC0.10.10.40.6-0.10.0-0.1
Delay disc. indifference point, 0s delay0.91.01.4-1.20.8-0.71.2
Delay disc. indifference point, 16s delay0.10.10.2-0.1-0.40.40.2
Delay disc. indifference point, 2s delay1.11.22.1-1.40.6-0.61.4
Delay disc. indifference point, 24s delay0.60.71.5-1.20.7-0.70.5
Delay disc. indifference point, 4s delay0.50.60.9-0.70.9-0.90.1
Delay disc. indifference point, 8s delay0.60.71.50.1-0.80.81.2
Indifference point function ln k0.20.40.80.4-0.90.80.0
Indifference point function log k0.20.40.80.4-0.90.80.0
Patch foraging total patch changes 0 sec0.20.41.0-1.00.5-0.50.3
Patch foraging total patch changes 12 sec0.10.10.20.10.4-0.40.1
Patch foraging total patch changes 18 sec0.10.20.3-0.30.5-0.5-0.1
Patch foraging total patch changes 24 sec0.40.70.90.8-1.00.90.7
Patch foraging total patch changes 6 sec0.91.32.1-0.71.4-1.4-0.9
Patch foraging time to switch 0 sec0.20.40.5-0.70.7-0.60.4
Patch foraging water rate 0 sec0.40.93.5-0.0-0.30.3-1.9
Patch foraging water rate 12 sec1.02.03.71.9-1.51.4-0.2
Patch foraging water rate 18 sec0.71.03.40.70.3-0.4-1.9
Patch foraging water rate 24 sec0.81.13.70.7-0.30.2-1.9
Patch foraging water rate 6 sec2.33.36.52.5-1.31.3-1.8
Seeking ratio, delayed vs. immediate footshock2.42.96.1-2.51.7-1.7-0.1
Distance traveled before self-admin0.30.40.60.2-0.70.70.8
Distance traveled after self-admin0.20.30.60.4-0.40.40.8
Extensor digitorum longus weight3.312.924.65.0-3.73.70.1
Bone: elastic displacement0.30.40.70.8-0.60.5-0.6
Bone: elastic work0.81.02.11.3-0.40.4-1.4
Bone: endosteal estimation0.40.92.30.7-0.70.71.5
Bone: endosteal perimeter0.81.71.91.1-1.41.41.3
Epididymis fat weight0.82.83.21.8-1.71.71.4
Delta time in closed arm before/after self-admin1.41.31.61.2-1.21.30.7
Delta time in open arm before/after self-admin1.81.82.60.4-1.51.51.6
Diff in mean of infusions in LGA sessions2.53.14.7-0.52.2-2.2-1.7
Delay discount exponential model param0.30.30.40.7-0.40.4-0.7
Extinction: sum of active levers before priming0.60.72.30.20.5-0.5-1.5
Active lever presses in extinction session 61.21.21.7-1.11.3-1.3-0.5
Bone: final force0.20.20.80.9-0.30.3-0.2
Bone: final moment0.10.20.60.8-0.10.1-0.3
Food consumed during 24 hour testing period0.60.91.81.3-0.90.9-0.4
Glucose0.40.61.71.3-0.60.5-0.3
Heart weight0.60.91.31.0-1.11.1-0.2
Delay discount hyperbolic model param0.40.50.80.8-0.50.5-0.9
Intermittent access intake day 1-15 change0.20.50.6-0.50.8-0.70.7
Intermittent access intake escalation0.51.11.5-1.11.2-1.20.4
Intermittent access intake escalation 21.71.92.8-1.01.7-1.7-1.0
Intermitt. access day 1 inactive lever presses0.10.20.30.6-0.40.40.5
Intermitt. access day 15 inactive lever presses0.40.91.60.8-1.31.20.3
Intermitt. access escalation Index0.10.20.40.2-0.60.60.2
Intermittent access day 1 total infusions0.91.53.01.7-1.21.20.3
Intermittent access day 15 total infusions0.10.10.30.50.1-0.10.2
Intermittent access terminal intake (last 3 days)0.20.30.80.9-0.30.3-0.1
Intermittent access total infusions0.60.81.91.4-0.80.7-0.0
Intermittent access day 1 locomotion0.70.91.31.0-1.11.10.4
Intermittent access day 15 total locomotion0.20.41.0-0.40.4-0.41.0
Intermittent access total locomotion0.10.10.10.4-0.20.20.3
Intermittent access standard deviation0.10.20.30.60.4-0.4-0.1
Left kidney weight0.52.35.02.2-1.41.4-0.4
Right kidney weight0.52.33.31.8-1.71.6-0.6
Cocaine induced anxiety0.00.10.1-0.20.3-0.3-0.0
Post-drug Anxiety0.20.20.4-0.60.3-0.30.6
Baseline Anxiety0.10.10.30.5-0.30.30.1
Tail length0.10.40.80.9-0.50.5-0.2
Length with tail0.31.52.51.6-1.01.0-1.2
Length without tail0.10.50.60.8-0.60.6-0.7
Times rat made contact with spout2.32.65.3-0.51.6-1.6-2.3
Lifetime Intake0.80.91.61.3-1.01.00.0
Liver weight, left0.30.40.60.6-0.80.70.5
Liver weight, right0.10.20.70.80.00.0-0.0
Locomotor activity0.00.10.1-0.00.3-0.30.3
Locomotor testing distance0.00.10.10.4-0.10.00.3
Locomotor testing rearing0.61.21.90.61.1-1.1-1.4
Locomotion in novel chamber6.27.913.5-3.72.8-2.8-1.6
Locomotion in novel chamber post-restriction0.20.30.5-0.40.7-0.7-0.3
Fecal boli incidents, locomotor time 10.60.81.50.2-0.90.91.2
Change in fecal boli incidents, locomotor task0.10.10.20.4-0.10.0-0.4
Time >=10cm from walls, locomotor time 12.83.04.5-1.12.0-2.1-1.4
Bouts of movement, locomotor time 10.70.81.1-0.51.0-1.0-1.0
Total resting periods, locomotor time 10.20.20.3-0.20.5-0.5-0.6
Rest time, locomotor task time 10.40.51.20.3-0.50.61.1
Distance moved, locomotor task time 10.10.10.1-0.00.3-0.4-0.4
Vertical activity count, locomotor time 10.20.50.7-0.70.6-0.6-0.8
Time >=10cm from walls, locomotor time 21.01.41.91.2-1.41.30.6
Bouts of movement, locomotor time 21.01.52.1-1.11.5-1.40.9
Total resting periods, locomotor time 20.81.41.8-1.11.4-1.31.0
Rest time, locomotor task time 20.30.40.7-0.80.5-0.50.7
Distance moved, locomotor task time 20.00.00.00.10.1-0.1-0.2
Vertical activity count, locomotor time 20.10.10.4-0.30.2-0.2-0.6
Light reinforcement 10.61.52.21.5-1.51.40.0
Light reinforcement 20.00.10.10.2-0.40.30.1
Bone: marrow area0.40.82.20.6-0.60.61.5
Bone: maximum diameter0.20.30.50.7-0.50.50.7
Bone: maximum force0.10.20.40.7-0.30.3-0.5
Bone: maximum moment0.10.20.40.5-0.10.1-0.7
Mean time between licks in bursts0.00.00.10.00.2-0.2-0.3
Mean num. licks in bursts0.60.91.4-0.81.2-1.2-0.3
Cd content in liver0.20.31.01.00.2-0.2-0.1
Co content in liver4.55.26.92.6-2.52.51.1
Cu content in liver2.83.44.3-1.42.1-2.1-1.7
Fe content in liver0.40.51.4-0.80.1-0.01.2
K content in liver0.80.81.0-0.91.0-1.00.4
Mg content in liver0.20.20.4-0.40.6-0.6-0.0
Mn content in liver0.50.61.10.41.0-1.00.4
Na content in liver0.20.30.4-0.70.5-0.6-0.0
Rb content in liver0.60.71.40.6-0.70.81.2
Se content in liver0.20.20.9-0.1-0.00.01.0
Sr content in liver0.40.41.50.20.1-0.11.2
Zn content in liver22.925.436.6-4.86.0-6.0-2.3
Bone: minimum diameter1.83.26.12.5-1.81.80.7
Time in familiar zone, hab. session 10.40.40.5-0.3-0.70.7-0.7
Time in novel zone, hab. session 10.60.62.10.10.4-0.31.5
Total zone transitions, hab. session 12.43.36.11.1-2.52.40.2
Total locomotion distance, hab. session 10.30.50.7-0.0-0.80.8-0.7
Locomotion velocity, hab. session 10.30.51.30.1-0.60.5-1.1
Time in familiar zone, hab. session 20.50.51.00.11.0-1.0-0.2
Time in novel zone, hab. session 20.40.40.9-0.2-0.60.61.0
Total zone transitions, hab. session 21.31.73.00.9-1.71.7-0.4
Total locomotion distance, hab. session 20.20.20.60.4-0.20.2-0.8
Locomotion velocity, hab. session 20.10.20.60.2-0.20.1-0.8
Novel to familiar place preference ratio0.00.00.0-0.1-0.0-0.0-0.2
Novelty place preference0.00.00.1-0.10.0-0.1-0.2
Time in novel zone, NPP test0.00.00.1-0.10.1-0.1-0.4
Total zone transitions, NPP test1.31.82.41.5-1.61.5-0.3
Total locomotion distance, NPP test0.50.62.20.40.3-0.3-1.5
Locomotion velocity, NPP test0.50.82.60.50.3-0.4-1.6
Intraocular pressure0.10.10.4-0.3-0.00.00.6
Delta distance traveled before/after self-admin0.20.20.40.50.00.00.7
Delta ambulatory time before/after self-admin0.10.10.20.40.4-0.3-0.1
Parametrial fat weight0.10.20.5-0.20.7-0.7-0.1
Pavlov. Cond. lever latency0.50.61.01.0-0.80.8-0.4
Pavlov. Cond. magazine entry latency0.40.60.80.3-0.80.80.9
Pavlov. Cond. change in total contacts0.10.10.1-0.4-0.10.20.2
Pavlov. Cond. index score0.20.30.4-0.60.6-0.60.2
Pavlov. Cond. latency score0.40.50.6-0.80.8-0.70.3
Pavlov. Cond. lever contacts0.30.40.5-0.60.7-0.70.1
Pavlov. Cond. magazine entry number0.50.70.9-0.80.9-0.9-0.6
Pavlov. Cond. intertrial magazine entries0.10.20.2-0.20.5-0.40.5
Pavlov. Cond. lever-magazine prob. diff.0.30.40.6-0.60.8-0.80.1
Pavlov. Cond. response bias0.10.10.30.1-0.50.50.2
Pavlov. Cond. lever latency0.60.81.6-1.30.7-0.70.7
Pavlov. Cond. magazine entry latency0.10.10.1-0.30.2-0.10.3
Pavlov. Cond. change in total contacts0.10.10.20.30.3-0.3-0.4
Pavlov. Cond. index score0.10.10.3-0.00.3-0.3-0.5
Pavlov. Cond. latency score0.20.20.3-0.30.6-0.5-0.5
Pavlov. Cond. lever contacts0.60.81.91.4-0.70.7-0.6
Pavlov. Cond. magazine entry number0.00.00.10.2-0.20.2-0.0
Pavlov. Cond. intertrial magazine entries0.10.20.40.10.4-0.4-0.6
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.10.4-0.4-0.5
Pavlov. Cond. response bias0.81.22.21.5-1.11.1-0.0
Time in closed arm before self-admin0.60.71.5-0.50.7-0.7-1.2
Time in closed arm after self-admin1.31.42.8-0.71.0-1.0-1.7
Time in open arm before self-admin0.30.30.70.40.4-0.5-0.8
Time in open arm after self-admin1.11.21.60.4-1.21.31.2
Bone: periosteal estimation0.61.22.41.6-0.90.90.9
Bone: periosteal perimeter1.32.32.81.7-1.51.51.3
Bone: post-yield work0.30.41.6-1.3-0.10.10.2
Progressive ratio test 1 active lever presses2.53.15.52.3-1.81.80.9
Progressive ratio test 1 breakpoint2.12.65.02.2-1.61.60.7
Progressive ratio test 1 inactive lever presses0.20.30.30.5-0.50.50.6
Progressive ratio test 2 active lever presses1.41.64.32.1-1.01.00.3
Progressive ratio test 2 breakpoint1.11.23.51.9-0.80.90.1
Progressive ratio test 2 inactive lever presses0.50.80.90.9-1.01.00.7
Incentive Sensitization - Responses0.10.10.1-0.30.4-0.30.1
Incentive Sensitization - Breakpoint0.10.10.2-0.30.5-0.40.0
Sum of active levers in priming session hrs 5-65.14.76.6-1.12.6-2.6-2.2
Progressive ratio0.20.30.5-0.0-0.70.70.5
Food seeking constrained by brief footshock0.70.82.11.50.2-0.2-1.0
Seeking ratio, punishment vs. effort0.71.11.80.51.0-1.0-1.3
Retroperitoneal fat weight0.10.51.61.2-0.50.50.2
Reaction time number correct0.00.10.30.2-0.0-0.0-0.5
Reaction time mean minus median0.10.30.5-0.50.7-0.60.4
Reaction time mean minus median AUC0.20.50.8-0.50.9-0.80.2
Reaction time num false alarms1.82.53.6-0.1-1.81.81.9
Reaction time num false alarms AUC2.13.34.80.3-2.22.21.9
Reaction time trials correct on left0.00.10.30.2-0.0-0.0-0.5
Reaction time trials on left0.00.10.30.10.1-0.1-0.5
Reaction time mean0.10.10.2-0.30.5-0.40.1
Reaction time mean AUC0.00.10.1-0.00.3-0.20.3
Median of all reaction times0.00.00.0-0.00.1-0.1-0.1
Reaction time omissions1.01.42.5-1.61.3-1.20.4
Reaction time false alarm rate1.31.82.5-0.1-1.51.51.6
Reaction time premature initiation rate2.53.45.11.7-2.32.20.9
Reaction time premature initiations2.23.95.81.9-2.42.40.8
Std. dev. reaction times0.40.71.1-0.91.0-0.90.3
Reaction time trials completed0.00.10.30.10.1-0.1-0.5
Reaction time trials AUC0.00.10.30.3-0.10.0-0.5
Run reversals in cocaine runway, females0.20.20.5-0.10.7-0.7-0.2
Run reversals in cocaine runway, males0.30.30.40.60.5-0.5-0.7
Latency to leave start box in cocaine runway0.20.30.5-0.70.5-0.60.2
Latency to leave start box in cocaine runway, F0.10.10.50.1-0.20.20.7
Latency to leave start box in cocaine runway, M2.01.92.2-1.51.4-1.5-1.1
Std. dev. time between licks in bursts0.10.10.2-0.4-0.20.2-0.4
Total sessions with >9 infusions1.51.82.41.0-1.51.51.2
Short access day 1 total inactive lever presses0.20.20.30.3-0.60.5-0.5
Short access day 10 total inactive lever presses0.30.83.0-1.70.3-0.30.5
Short access day 1 total infusions0.91.32.10.4-1.41.40.9
Short access day 10 total infusions0.60.71.01.0-0.90.80.7
Short access total infusions1.01.21.90.9-1.41.30.6
Short access day 1 locomotion0.30.40.90.3-0.90.90.1
Short access day 10 total locomotion0.10.20.3-0.20.5-0.60.0
Short access total locomotion0.20.20.6-0.4-0.10.10.8
One hour access (0.3 mA shock)0.20.20.20.50.5-0.50.1
Compulsive drug intake0.20.30.6-0.20.7-0.7-0.1
One hour access (shock baseline)0.10.20.60.8-0.20.20.2
Social response proportion0.30.41.2-1.10.2-0.20.4
Social responses1.01.32.4-0.81.0-1.0-1.5
Social time1.21.73.5-1.91.2-1.2-0.6
Soleus weight1.02.94.02.0-1.81.80.9
Bone: stiffness0.20.30.50.7-0.40.4-0.6
Tibialis anterior weight3.511.923.94.9-3.43.4-0.3
Time to tail flick, vehicle, before self-admin0.50.51.0-0.7-0.40.51.0
Time to tail flick, vehicle, after self-admin0.60.82.5-0.7-0.40.41.6
Time to tail flick, test, before self-admin0.50.50.9-0.90.5-0.40.9
Time to tail flick, test, after self-admin0.10.10.1-0.3-0.40.4-0.1
Delta time to tail flick, vehicle, before/after SA0.40.40.70.3-0.60.50.8
Delta time to tail flick, test, before/after SA0.60.60.91.0-0.70.7-0.7
Tibia length0.30.92.81.7-0.50.60.5
Ambulatory time before self-admin0.40.60.90.1-1.00.90.8
Ambulatory time after self-admin0.50.61.60.0-0.60.61.3
Bone: tissue strength0.30.31.10.4-0.10.1-1.1
Total heroin consumption0.60.70.9-0.40.9-0.9-0.9
Bone: trabecular number0.30.51.5-1.20.5-0.50.4
Bone: trabecular spacing0.81.01.70.01.3-1.3-0.9
Bone: trabecular thickness0.30.40.70.1-0.90.90.0
Bone: trabecular tissue density0.20.30.50.5-0.70.70.3
Water consumed over 24 hours0.30.51.50.50.1-0.1-1.2
Number of responses in last shaping day5.35.87.51.6-2.72.72.4