H2az1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression H2az1 0.04 0.03 1.5e-03 0.01 0.02 0.02 0.01 2.3e-03 5.9e-04 7.0e-04 2.4e-03
2 BLA alternative polyA XM_063282425.1 0.07 0.04 3.6e-04 0.05 0.04 0.06 0.04 9.8e-04 3.1e-03 4.9e-04 5.8e-03
3 BLA alternative polyA NM_022674.2 0.07 0.04 4.0e-04 0.04 0.04 0.04 0.03 3.9e-03 4.0e-03 2.0e-03 1.4e-02
4 BLA gene expression H2az1 0.18 0.09 1.7e-04 0.01 0.04 0.05 0.04 9.1e-02 4.6e-03 1.9e-03 3.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.01.92.3-1.2-1.51.51.3
Area under the delay curve0.20.30.7-0.6-0.30.3-0.8
BMI with tail1.24.16.92.62.2-2.1-0.3
BMI without tail0.73.97.62.82.0-1.9-0.4
Body weight1.46.211.93.42.5-2.50.8
Weight adjusted by age0.30.81.70.00.9-0.8-1.3
Bone surface0.20.50.7-0.9-0.70.70.2
Bone volume0.20.30.4-0.7-0.60.60.4
Breakpoint value in progressive ratio session0.61.13.10.2-0.80.91.8
Number of licking bursts0.20.51.30.60.3-0.31.1
Context. condit. distance diff. score0.60.71.2-0.6-0.80.81.1
Locomotion velocity, session 11.92.13.31.31.8-1.80.4
Locomotion distance, session 11.21.62.70.81.6-1.60.6
Locomotion velocity, session 20.10.10.2-0.20.0-0.00.5
Locomotion distance, session 21.41.93.40.81.8-1.8-0.6
Locomotion velocity, session 32.42.74.71.22.2-2.10.2
Locomotion distance, session 30.20.30.40.20.7-0.6-0.3
Stereotopy head waving bouts, day 31.72.02.71.71.6-1.6-0.4
Stereotopy head waving duration, day 31.72.13.31.81.6-1.60.2
Locomotion velocity, session 70.70.70.90.91.0-0.90.5
Locomotion distance, session 70.10.10.2-0.00.5-0.40.3
Stereotopy head waving bouts, day 71.41.62.10.81.4-1.5-1.3
Stereotopy head waving duration, day 72.02.53.40.91.8-1.9-1.6
Locomotion velocity, session 80.10.10.3-0.00.5-0.50.0
Locomotion distance, session 80.50.81.00.51.0-0.91.0
Degree of sensitization distance0.70.71.3-0.5-0.80.91.1
Degree of sensitization stereotypy0.80.91.50.40.9-1.0-1.2
Conditioned locomotion0.20.20.6-0.80.1-0.0-0.5
Cocaine response after cond. corrected0.20.30.8-0.1-0.50.40.9
Cocaine response after cond. not corrected0.60.91.2-0.7-1.11.11.0
Cocaine response before conditioning0.10.10.2-0.4-0.20.2-0.3
Saline control response2.83.96.21.02.0-2.0-2.5
Bone: connectivity density2.03.24.1-2.0-1.91.91.3
Bone: cortical apparent density0.10.10.50.7-0.0-0.00.2
Bone: cortical area0.50.82.51.60.6-0.60.1
Bone: cortical porosity0.91.01.60.71.3-1.3-0.2
Bone: cortical porosity1.31.42.21.11.5-1.5-0.3
Bone: cortical thickness0.50.81.91.20.00.01.4
Bone: cortical thickness0.30.40.90.7-0.10.10.9
Bone: cortical tissue density0.10.20.60.80.0-0.10.2
Condit. Reinf. active minus inactive responses1.72.03.31.81.5-1.5-0.3
Condit. Reinf. active-inactive response ratio3.03.37.62.81.6-1.60.3
Condit. Reinf. active responses0.81.01.20.91.1-1.1-0.8
Condit. Reinf. inactive responses0.40.61.3-1.1-0.20.2-1.0
Incentive salience index mean0.81.12.21.51.0-1.0-0.1
Condit. Reinf. lever presses0.10.10.10.40.3-0.3-0.1
Condit. Reinf. active minus inactive responses0.10.10.40.6-0.10.0-0.2
Condit. Reinf. active-inactive response ratio0.20.40.80.6-0.40.40.9
Condit. Reinf. active responses0.10.20.60.80.1-0.1-0.3
Condit. Reinf. inactive responses0.50.70.80.70.9-0.9-0.8
Condit. Reinf. lever presses0.10.20.20.4-0.40.40.4
Condit. Reinf. lever reinforcers received0.10.10.30.6-0.10.1-0.0
Conditioned reinforcement - actives0.31.01.40.41.2-1.2-1.1
Conditioned reinforcement - inactives0.20.51.7-0.10.3-0.3-1.3
Conditioned locomotion0.91.33.8-1.9-0.70.8-0.5
Patch foraging indifference point 0 sec0.20.51.3-1.1-0.50.6-0.4
Patch foraging indifference point AUC0.00.10.40.60.1-0.00.1
Delay disc. indifference point, 0s delay0.91.01.4-1.2-0.80.7-1.2
Delay disc. indifference point, 16s delay0.10.10.2-0.10.4-0.4-0.2
Delay disc. indifference point, 2s delay1.11.22.1-1.4-0.60.6-1.4
Delay disc. indifference point, 24s delay0.40.71.5-1.2-0.70.7-0.5
Delay disc. indifference point, 4s delay0.50.60.9-0.7-0.90.9-0.1
Delay disc. indifference point, 8s delay0.40.71.50.10.8-0.8-1.2
Indifference point function ln k0.10.40.80.40.9-0.8-0.0
Indifference point function log k0.10.40.80.40.9-0.8-0.0
Patch foraging total patch changes 0 sec0.10.41.0-1.0-0.50.5-0.3
Patch foraging total patch changes 12 sec0.10.10.20.1-0.40.4-0.1
Patch foraging total patch changes 18 sec0.10.20.3-0.3-0.50.50.1
Patch foraging total patch changes 24 sec0.20.70.90.81.0-0.9-0.7
Patch foraging total patch changes 6 sec0.81.32.1-0.7-1.41.40.9
Patch foraging time to switch 0 sec0.10.40.5-0.7-0.70.6-0.4
Patch foraging water rate 0 sec0.20.93.5-0.00.3-0.31.9
Patch foraging water rate 12 sec0.52.03.71.91.5-1.40.2
Patch foraging water rate 18 sec0.51.03.40.7-0.30.41.9
Patch foraging water rate 24 sec0.81.13.70.70.3-0.21.9
Patch foraging water rate 6 sec2.33.36.52.51.3-1.31.8
Seeking ratio, delayed vs. immediate footshock2.02.96.1-2.5-1.71.70.1
Distance traveled before self-admin0.20.40.60.20.7-0.7-0.8
Distance traveled after self-admin0.10.30.60.40.4-0.4-0.8
Extensor digitorum longus weight3.212.924.65.03.7-3.7-0.1
Bone: elastic displacement0.30.40.70.80.6-0.50.6
Bone: elastic work0.81.02.11.30.4-0.41.4
Bone: endosteal estimation0.40.92.30.70.7-0.7-1.5
Bone: endosteal perimeter0.71.71.91.11.4-1.4-1.3
Epididymis fat weight0.62.83.21.81.7-1.7-1.4
Delta time in closed arm before/after self-admin1.41.31.61.21.2-1.3-0.7
Delta time in open arm before/after self-admin1.51.82.60.41.5-1.5-1.6
Diff in mean of infusions in LGA sessions1.73.14.7-0.5-2.22.21.7
Delay discount exponential model param0.20.30.40.70.4-0.40.7
Extinction: sum of active levers before priming0.50.72.30.2-0.50.51.5
Active lever presses in extinction session 61.21.21.7-1.1-1.31.30.5
Bone: final force0.10.20.80.90.3-0.30.2
Bone: final moment0.10.20.60.80.1-0.10.3
Food consumed during 24 hour testing period0.40.91.81.30.9-0.90.4
Glucose0.40.61.71.30.6-0.50.3
Heart weight0.50.91.31.01.1-1.10.2
Delay discount hyperbolic model param0.40.50.80.80.5-0.50.9
Intermittent access intake day 1-15 change0.10.50.6-0.5-0.80.7-0.7
Intermittent access intake escalation0.21.11.5-1.1-1.21.2-0.4
Intermittent access intake escalation 21.11.92.8-1.0-1.71.71.0
Intermitt. access day 1 inactive lever presses0.00.20.30.60.4-0.4-0.5
Intermitt. access day 15 inactive lever presses0.20.91.60.81.3-1.2-0.3
Intermitt. access escalation Index0.10.20.40.20.6-0.6-0.2
Intermittent access day 1 total infusions0.51.53.01.71.2-1.2-0.3
Intermittent access day 15 total infusions0.00.10.30.5-0.10.1-0.2
Intermittent access terminal intake (last 3 days)0.10.30.80.90.3-0.30.1
Intermittent access total infusions0.60.81.91.40.8-0.70.0
Intermittent access day 1 locomotion0.50.91.31.01.1-1.1-0.4
Intermittent access day 15 total locomotion0.10.41.0-0.4-0.40.4-1.0
Intermittent access total locomotion0.10.10.10.40.2-0.2-0.3
Intermittent access standard deviation0.00.20.30.6-0.40.40.1
Left kidney weight0.32.35.02.21.4-1.40.4
Right kidney weight0.32.33.31.81.7-1.60.6
Cocaine induced anxiety0.00.10.1-0.2-0.30.30.0
Post-drug Anxiety0.20.20.4-0.6-0.30.3-0.6
Baseline Anxiety0.10.10.30.50.3-0.3-0.1
Tail length0.10.40.80.90.5-0.50.2
Length with tail0.31.52.51.61.0-1.01.2
Length without tail0.10.50.60.80.6-0.60.7
Times rat made contact with spout2.32.65.3-0.5-1.61.62.3
Lifetime Intake0.70.91.61.31.0-1.0-0.0
Liver weight, left0.20.40.60.60.8-0.7-0.5
Liver weight, right0.10.20.70.8-0.0-0.00.0
Locomotor activity0.00.10.1-0.0-0.30.3-0.3
Locomotor testing distance0.00.10.10.40.1-0.0-0.3
Locomotor testing rearing0.31.21.90.6-1.11.11.4
Locomotion in novel chamber5.97.913.5-3.7-2.82.81.6
Locomotion in novel chamber post-restriction0.10.30.5-0.4-0.70.70.3
Fecal boli incidents, locomotor time 10.30.81.50.20.9-0.9-1.2
Change in fecal boli incidents, locomotor task0.10.10.20.40.1-0.00.4
Time >=10cm from walls, locomotor time 12.43.04.5-1.1-2.02.11.4
Bouts of movement, locomotor time 10.60.81.1-0.5-1.01.01.0
Total resting periods, locomotor time 10.20.20.3-0.2-0.50.50.6
Rest time, locomotor task time 10.30.51.20.30.5-0.6-1.1
Distance moved, locomotor task time 10.00.10.1-0.0-0.30.40.4
Vertical activity count, locomotor time 10.10.50.7-0.7-0.60.60.8
Time >=10cm from walls, locomotor time 20.51.41.91.21.4-1.3-0.6
Bouts of movement, locomotor time 20.51.52.1-1.1-1.51.4-0.9
Total resting periods, locomotor time 20.41.41.8-1.1-1.41.3-1.0
Rest time, locomotor task time 20.20.40.7-0.8-0.50.5-0.7
Distance moved, locomotor task time 20.00.00.00.1-0.10.10.2
Vertical activity count, locomotor time 20.10.10.4-0.3-0.20.20.6
Light reinforcement 10.31.52.21.51.5-1.4-0.0
Light reinforcement 20.00.10.10.20.4-0.3-0.1
Bone: marrow area0.30.82.20.60.6-0.6-1.5
Bone: maximum diameter0.20.30.50.70.5-0.5-0.7
Bone: maximum force0.10.20.40.70.3-0.30.5
Bone: maximum moment0.10.20.40.50.1-0.10.7
Mean time between licks in bursts0.00.00.10.0-0.20.20.3
Mean num. licks in bursts0.30.91.4-0.8-1.21.20.3
Cd content in liver0.20.31.01.0-0.20.20.1
Co content in liver4.45.26.92.62.5-2.5-1.1
Cu content in liver2.83.44.3-1.4-2.12.11.7
Fe content in liver0.40.51.4-0.8-0.10.0-1.2
K content in liver0.80.81.0-0.9-1.01.0-0.4
Mg content in liver0.20.20.4-0.4-0.60.60.0
Mn content in liver0.50.61.10.4-1.01.0-0.4
Na content in liver0.20.30.4-0.7-0.50.60.0
Rb content in liver0.60.71.40.60.7-0.8-1.2
Se content in liver0.20.20.9-0.10.0-0.0-1.0
Sr content in liver0.40.41.50.2-0.10.1-1.2
Zn content in liver21.825.436.6-4.8-6.06.02.3
Bone: minimum diameter1.73.26.12.51.8-1.8-0.7
Time in familiar zone, hab. session 10.40.40.5-0.30.7-0.70.7
Time in novel zone, hab. session 10.50.62.10.1-0.40.3-1.5
Total zone transitions, hab. session 12.43.36.11.12.5-2.4-0.2
Total locomotion distance, hab. session 10.30.50.7-0.00.8-0.80.7
Locomotion velocity, hab. session 10.30.51.30.10.6-0.51.1
Time in familiar zone, hab. session 20.50.51.00.1-1.01.00.2
Time in novel zone, hab. session 20.40.40.9-0.20.6-0.6-1.0
Total zone transitions, hab. session 21.31.73.00.91.7-1.70.4
Total locomotion distance, hab. session 20.20.20.60.40.2-0.20.8
Locomotion velocity, hab. session 20.10.20.60.20.2-0.10.8
Novel to familiar place preference ratio0.00.00.0-0.10.00.00.2
Novelty place preference0.00.00.1-0.1-0.00.10.2
Time in novel zone, NPP test0.00.00.1-0.1-0.10.10.4
Total zone transitions, NPP test1.21.82.41.51.6-1.50.3
Total locomotion distance, NPP test0.40.62.20.4-0.30.31.5
Locomotion velocity, NPP test0.50.82.60.5-0.30.41.6
Intraocular pressure0.10.10.4-0.30.0-0.0-0.6
Delta distance traveled before/after self-admin0.20.20.40.5-0.0-0.0-0.7
Delta ambulatory time before/after self-admin0.10.10.20.4-0.40.30.1
Parametrial fat weight0.10.20.5-0.2-0.70.70.1
Pavlov. Cond. lever latency0.50.61.01.00.8-0.80.4
Pavlov. Cond. magazine entry latency0.40.60.80.30.8-0.8-0.9
Pavlov. Cond. change in total contacts0.10.10.1-0.40.1-0.2-0.2
Pavlov. Cond. index score0.20.30.4-0.6-0.60.6-0.2
Pavlov. Cond. latency score0.40.50.6-0.8-0.80.7-0.3
Pavlov. Cond. lever contacts0.30.40.5-0.6-0.70.7-0.1
Pavlov. Cond. magazine entry number0.50.70.9-0.8-0.90.90.6
Pavlov. Cond. intertrial magazine entries0.10.20.2-0.2-0.50.4-0.5
Pavlov. Cond. lever-magazine prob. diff.0.30.40.6-0.6-0.80.8-0.1
Pavlov. Cond. response bias0.10.10.30.10.5-0.5-0.2
Pavlov. Cond. lever latency0.60.81.6-1.3-0.70.7-0.7
Pavlov. Cond. magazine entry latency0.00.10.1-0.3-0.20.1-0.3
Pavlov. Cond. change in total contacts0.00.10.20.3-0.30.30.4
Pavlov. Cond. index score0.10.10.3-0.0-0.30.30.5
Pavlov. Cond. latency score0.20.20.3-0.3-0.60.50.5
Pavlov. Cond. lever contacts0.60.81.91.40.7-0.70.6
Pavlov. Cond. magazine entry number0.00.00.10.20.2-0.20.0
Pavlov. Cond. intertrial magazine entries0.10.20.40.1-0.40.40.6
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.1-0.40.40.5
Pavlov. Cond. response bias0.81.22.21.51.1-1.10.0
Time in closed arm before self-admin0.40.71.5-0.5-0.70.71.2
Time in closed arm after self-admin1.21.42.8-0.7-1.01.01.7
Time in open arm before self-admin0.30.30.70.4-0.40.50.8
Time in open arm after self-admin1.11.21.60.41.2-1.3-1.2
Bone: periosteal estimation0.51.22.41.60.9-0.9-0.9
Bone: periosteal perimeter1.12.32.81.71.5-1.5-1.3
Bone: post-yield work0.20.41.6-1.30.1-0.1-0.2
Progressive ratio test 1 active lever presses1.83.15.52.31.8-1.8-0.9
Progressive ratio test 1 breakpoint1.52.65.02.21.6-1.6-0.7
Progressive ratio test 1 inactive lever presses0.10.30.30.50.5-0.5-0.6
Progressive ratio test 2 active lever presses1.11.64.32.11.0-1.0-0.3
Progressive ratio test 2 breakpoint1.01.23.51.90.8-0.9-0.1
Progressive ratio test 2 inactive lever presses0.20.80.90.91.0-1.0-0.7
Incentive Sensitization - Responses0.00.10.1-0.3-0.40.3-0.1
Incentive Sensitization - Breakpoint0.10.10.2-0.3-0.50.4-0.0
Sum of active levers in priming session hrs 5-65.04.76.6-1.1-2.62.62.2
Progressive ratio0.10.30.5-0.00.7-0.7-0.5
Food seeking constrained by brief footshock0.70.82.11.5-0.20.21.0
Seeking ratio, punishment vs. effort0.51.11.80.5-1.01.01.3
Retroperitoneal fat weight0.10.51.61.20.5-0.5-0.2
Reaction time number correct0.00.10.30.20.00.00.5
Reaction time mean minus median0.00.30.5-0.5-0.70.6-0.4
Reaction time mean minus median AUC0.10.50.8-0.5-0.90.8-0.2
Reaction time num false alarms1.52.53.6-0.11.8-1.8-1.9
Reaction time num false alarms AUC1.53.34.80.32.2-2.2-1.9
Reaction time trials correct on left0.00.10.30.20.00.00.5
Reaction time trials on left0.00.10.30.1-0.10.10.5
Reaction time mean0.10.10.2-0.3-0.50.4-0.1
Reaction time mean AUC0.00.10.1-0.0-0.30.2-0.3
Median of all reaction times0.00.00.0-0.0-0.10.10.1
Reaction time omissions0.91.42.5-1.6-1.31.2-0.4
Reaction time false alarm rate1.31.82.5-0.11.5-1.5-1.6
Reaction time premature initiation rate2.23.45.11.72.3-2.2-0.9
Reaction time premature initiations1.33.95.81.92.4-2.4-0.8
Std. dev. reaction times0.20.71.1-0.9-1.00.9-0.3
Reaction time trials completed0.00.10.30.1-0.10.10.5
Reaction time trials AUC0.00.10.30.30.1-0.00.5
Run reversals in cocaine runway, females0.20.20.5-0.1-0.70.70.2
Run reversals in cocaine runway, males0.30.30.40.6-0.50.50.7
Latency to leave start box in cocaine runway0.20.30.5-0.7-0.50.6-0.2
Latency to leave start box in cocaine runway, F0.10.10.50.10.2-0.2-0.7
Latency to leave start box in cocaine runway, M2.01.92.2-1.5-1.41.51.1
Std. dev. time between licks in bursts0.10.10.2-0.40.2-0.20.4
Total sessions with >9 infusions1.41.82.41.01.5-1.5-1.2
Short access day 1 total inactive lever presses0.10.20.30.30.6-0.50.5
Short access day 10 total inactive lever presses0.10.83.0-1.7-0.30.3-0.5
Short access day 1 total infusions0.61.32.10.41.4-1.4-0.9
Short access day 10 total infusions0.40.71.01.00.9-0.8-0.7
Short access total infusions0.91.21.90.91.4-1.3-0.6
Short access day 1 locomotion0.30.40.90.30.9-0.9-0.1
Short access day 10 total locomotion0.00.20.3-0.2-0.50.6-0.0
Short access total locomotion0.10.20.6-0.40.1-0.1-0.8
One hour access (0.3 mA shock)0.10.20.20.5-0.50.5-0.1
Compulsive drug intake0.20.30.6-0.2-0.70.70.1
One hour access (shock baseline)0.10.20.60.80.2-0.2-0.2
Social response proportion0.30.41.2-1.1-0.20.2-0.4
Social responses1.01.32.4-0.8-1.01.01.5
Social time1.11.73.5-1.9-1.21.20.6
Soleus weight1.02.94.02.01.8-1.8-0.9
Bone: stiffness0.20.30.50.70.4-0.40.6
Tibialis anterior weight3.411.923.94.93.4-3.40.3
Time to tail flick, vehicle, before self-admin0.40.51.0-0.70.4-0.5-1.0
Time to tail flick, vehicle, after self-admin0.40.82.5-0.70.4-0.4-1.6
Time to tail flick, test, before self-admin0.50.50.9-0.9-0.50.4-0.9
Time to tail flick, test, after self-admin0.10.10.1-0.30.4-0.40.1
Delta time to tail flick, vehicle, before/after SA0.30.40.70.30.6-0.5-0.8
Delta time to tail flick, test, before/after SA0.50.60.91.00.7-0.70.7
Tibia length0.30.92.81.70.5-0.6-0.5
Ambulatory time before self-admin0.20.60.90.11.0-0.9-0.8
Ambulatory time after self-admin0.40.61.60.00.6-0.6-1.3
Bone: tissue strength0.30.31.10.40.1-0.11.1
Total heroin consumption0.60.70.9-0.4-0.90.90.9
Bone: trabecular number0.30.51.5-1.2-0.50.5-0.4
Bone: trabecular spacing0.71.01.70.0-1.31.30.9
Bone: trabecular thickness0.30.40.70.10.9-0.9-0.0
Bone: trabecular tissue density0.20.30.50.50.7-0.7-0.3
Water consumed over 24 hours0.20.51.50.5-0.10.11.2
Number of responses in last shaping day4.55.87.51.62.7-2.7-2.4