Gas2l1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Gas2l1 0.02 0.02 6.5e-03 0.01 0.01 0 0.01 1.3e-02 9.9e-03 1.4e-01 1.1e-02
2 PL alternative polyA NM_001401406.1 0.06 0.04 1.8e-03 0.01 0.03 0.01 0.02 2.0e-02 6.0e-04 7.3e-03 6.4e-03
3 PL alternative polyA XM_039092217.1 0.06 0.04 2.6e-03 0.01 0.03 0.01 0.01 6.5e-02 8.0e-04 1.0e-02 9.1e-03
4 Adipose gene expression Gas2l1 0.04 0.03 2.5e-03 0.01 0.01 0.01 0.01 7.7e-03 4.9e-02 1.7e-02 2.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.40.80.30.5-0.60.9
Area under the delay curve1.71.84.4-2.11.2-1.2-0.2
BMI with tail0.00.00.00.1-0.10.1-0.1
BMI without tail0.40.81.20.11.0-1.01.1
Body weight0.83.35.8-2.41.9-1.90.2
Weight adjusted by age1.51.72.4-1.01.6-1.51.0
Bone surface0.20.30.4-0.70.6-0.50.3
Bone volume0.30.40.6-0.60.8-0.70.6
Breakpoint value in progressive ratio session0.70.81.9-1.40.8-0.8-0.3
Number of licking bursts1.82.24.1-2.01.5-1.50.2
Context. condit. distance diff. score1.82.25.52.3-1.31.20.3
Locomotion velocity, session 12.62.84.50.1-1.81.9-2.1
Locomotion distance, session 10.40.51.10.80.2-0.31.0
Locomotion velocity, session 22.12.53.40.2-1.81.8-1.8
Locomotion distance, session 21.52.12.81.7-1.71.6-0.4
Locomotion velocity, session 31.01.23.21.8-0.60.50.9
Locomotion distance, session 30.00.00.1-0.10.1-0.10.3
Stereotopy head waving bouts, day 30.40.41.21.1-0.30.20.6
Stereotopy head waving duration, day 30.91.02.41.6-1.00.90.0
Locomotion velocity, session 70.00.00.1-0.4-0.00.1-0.2
Locomotion distance, session 70.50.60.90.7-1.01.0-0.5
Stereotopy head waving bouts, day 70.10.10.40.6-0.30.20.1
Stereotopy head waving duration, day 70.30.30.60.10.6-0.60.8
Locomotion velocity, session 82.32.73.91.5-2.02.0-1.0
Locomotion distance, session 84.16.113.63.7-2.42.20.2
Degree of sensitization distance1.91.92.41.5-1.61.5-0.9
Degree of sensitization stereotypy0.10.10.2-0.40.5-0.50.1
Conditioned locomotion0.80.92.01.20.3-0.41.4
Cocaine response after cond. corrected1.11.22.4-1.61.1-1.1-0.0
Cocaine response after cond. not corrected1.92.12.9-1.71.7-1.60.5
Cocaine response before conditioning0.20.20.40.60.2-0.20.6
Saline control response0.91.11.61.1-1.31.3-0.4
Bone: connectivity density0.20.20.60.50.2-0.20.8
Bone: cortical apparent density0.50.61.1-1.10.9-0.80.1
Bone: cortical area1.82.75.4-2.31.7-1.60.2
Bone: cortical porosity0.40.40.6-0.30.8-0.80.7
Bone: cortical porosity0.10.10.20.30.2-0.20.4
Bone: cortical thickness2.13.54.5-1.92.1-2.11.1
Bone: cortical thickness0.91.12.30.60.8-0.91.5
Bone: cortical tissue density0.40.61.2-1.10.8-0.80.0
Condit. Reinf. active minus inactive responses1.11.32.6-0.7-1.01.1-1.6
Condit. Reinf. active-inactive response ratio4.54.87.10.3-2.42.5-2.7
Condit. Reinf. active responses0.40.50.9-0.4-0.60.7-0.9
Condit. Reinf. inactive responses1.01.11.5-0.51.2-1.21.2
Incentive salience index mean0.50.61.1-0.9-0.40.4-1.1
Condit. Reinf. lever presses0.10.20.2-0.50.4-0.40.3
Condit. Reinf. active minus inactive responses0.30.40.70.8-0.70.7-0.2
Condit. Reinf. active-inactive response ratio0.10.10.20.2-0.40.4-0.4
Condit. Reinf. active responses0.60.81.11.0-1.01.0-0.4
Condit. Reinf. inactive responses0.70.91.21.0-1.11.1-0.5
Condit. Reinf. lever presses0.20.30.70.9-0.40.40.3
Condit. Reinf. lever reinforcers received0.50.70.90.9-0.90.9-0.3
Conditioned reinforcement - actives0.10.10.30.0-0.40.4-0.6
Conditioned reinforcement - inactives0.10.10.1-0.2-0.20.2-0.4
Conditioned locomotion0.10.20.2-0.20.5-0.50.3
Patch foraging indifference point 0 sec1.01.73.1-1.81.3-1.30.1
Patch foraging indifference point AUC0.10.10.1-0.3-0.20.2-0.3
Delay disc. indifference point, 0s delay0.80.91.4-1.21.0-1.00.2
Delay disc. indifference point, 16s delay1.21.22.9-1.70.1-0.0-1.3
Delay disc. indifference point, 2s delay2.52.83.9-1.32.0-2.01.3
Delay disc. indifference point, 24s delay0.50.51.2-1.1-0.00.1-0.9
Delay disc. indifference point, 4s delay2.62.73.9-2.01.9-1.80.6
Delay disc. indifference point, 8s delay0.40.51.3-1.20.4-0.3-0.5
Indifference point function ln k0.30.50.80.10.7-0.70.9
Indifference point function log k0.30.50.80.10.7-0.70.9
Patch foraging total patch changes 0 sec0.91.43.1-1.81.1-1.1-0.1
Patch foraging total patch changes 12 sec0.50.71.6-1.20.8-0.70.0
Patch foraging total patch changes 18 sec1.01.32.8-1.4-0.40.5-1.7
Patch foraging total patch changes 24 sec1.51.82.41.2-1.61.5-1.0
Patch foraging total patch changes 6 sec0.60.92.6-1.60.7-0.6-0.3
Patch foraging time to switch 0 sec0.10.20.60.8-0.20.20.2
Patch foraging water rate 0 sec0.50.82.6-1.60.4-0.3-0.7
Patch foraging water rate 12 sec0.00.00.0-0.10.0-0.0-0.0
Patch foraging water rate 18 sec1.62.23.10.01.6-1.71.8
Patch foraging water rate 24 sec0.50.71.2-0.1-0.80.9-1.1
Patch foraging water rate 6 sec0.30.50.7-0.70.8-0.80.4
Seeking ratio, delayed vs. immediate footshock0.10.10.20.4-0.30.3-0.2
Distance traveled before self-admin1.61.72.3-0.71.5-1.51.2
Distance traveled after self-admin1.11.21.7-0.61.3-1.31.1
Extensor digitorum longus weight1.87.214.4-3.82.7-2.60.2
Bone: elastic displacement0.60.61.30.70.6-0.61.2
Bone: elastic work1.31.72.3-0.31.5-1.51.4
Bone: endosteal estimation0.10.10.2-0.50.4-0.4-0.0
Bone: endosteal perimeter0.30.61.5-1.20.6-0.6-0.3
Epididymis fat weight0.41.02.50.80.7-0.81.6
Delta time in closed arm before/after self-admin2.12.06.12.5-0.90.80.8
Delta time in open arm before/after self-admin3.23.18.9-3.01.2-1.1-0.9
Diff in mean of infusions in LGA sessions0.20.20.40.40.3-0.30.6
Delay discount exponential model param1.61.73.92.0-1.21.20.2
Extinction: sum of active levers before priming0.70.71.9-0.6-0.50.5-1.4
Active lever presses in extinction session 60.70.61.0-0.51.0-1.00.6
Bone: final force0.20.30.6-0.80.6-0.60.1
Bone: final moment0.40.60.9-1.00.9-0.80.3
Food consumed during 24 hour testing period1.01.22.3-1.4-0.30.4-1.5
Glucose10.415.632.5-4.8-1.72.1-5.7
Heart weight1.31.82.71.0-1.61.6-1.0
Delay discount hyperbolic model param1.81.94.02.0-1.31.30.1
Intermittent access intake day 1-15 change1.00.91.9-0.3-0.91.0-1.4
Intermittent access intake escalation0.70.71.3-0.1-0.90.9-1.1
Intermittent access intake escalation 20.30.30.5-0.1-0.60.6-0.7
Intermitt. access day 1 inactive lever presses1.01.11.41.1-1.21.2-0.5
Intermitt. access day 15 inactive lever presses1.71.84.0-0.7-1.21.2-2.0
Intermitt. access escalation Index0.50.40.8-0.1-0.60.7-0.9
Intermittent access day 1 total infusions0.20.20.30.10.5-0.50.6
Intermittent access day 15 total infusions0.10.10.2-0.50.00.0-0.4
Intermittent access terminal intake (last 3 days)0.10.10.2-0.4-0.00.0-0.4
Intermittent access total infusions0.10.10.2-0.30.4-0.40.1
Intermittent access day 1 locomotion0.20.20.70.9-0.20.10.4
Intermittent access day 15 total locomotion0.20.20.6-0.5-0.20.3-0.8
Intermittent access total locomotion0.10.10.3-0.50.2-0.1-0.4
Intermittent access standard deviation0.60.61.51.2-0.70.60.2
Left kidney weight0.20.71.10.20.8-0.91.1
Right kidney weight0.61.83.61.30.9-1.01.9
Cocaine induced anxiety1.01.13.1-1.80.6-0.5-0.9
Post-drug Anxiety0.50.51.2-1.0-0.20.2-1.1
Baseline Anxiety0.80.81.20.5-1.11.1-0.8
Tail length2.37.110.2-2.33.2-3.21.7
Length with tail1.55.68.9-3.02.6-2.50.5
Length without tail0.51.13.0-1.70.3-0.2-1.1
Times rat made contact with spout2.32.74.20.0-1.81.8-2.0
Lifetime Intake0.40.40.6-0.50.8-0.80.5
Liver weight, left1.32.03.91.40.9-1.12.0
Liver weight, right1.32.14.62.20.3-0.41.9
Locomotor activity0.40.71.5-1.0-0.20.3-1.2
Locomotor testing distance1.01.62.4-0.71.5-1.51.1
Locomotor testing rearing0.81.23.1-1.81.0-0.9-0.3
Locomotion in novel chamber1.51.85.32.3-0.60.51.2
Locomotion in novel chamber post-restriction3.84.66.12.2-2.52.4-1.3
Fecal boli incidents, locomotor time 10.20.30.30.5-0.60.6-0.3
Change in fecal boli incidents, locomotor task0.80.81.3-0.0-0.91.0-1.1
Time >=10cm from walls, locomotor time 10.00.00.00.0-0.20.2-0.2
Bouts of movement, locomotor time 11.11.22.6-0.6-0.91.0-1.6
Total resting periods, locomotor time 11.71.93.5-0.2-1.41.5-1.9
Rest time, locomotor task time 10.60.71.1-0.1-0.90.9-1.0
Distance moved, locomotor task time 11.31.41.9-0.61.4-1.41.2
Vertical activity count, locomotor time 10.60.60.9-0.40.9-0.90.7
Time >=10cm from walls, locomotor time 20.10.10.20.3-0.40.4-0.4
Bouts of movement, locomotor time 20.00.00.00.10.1-0.10.0
Total resting periods, locomotor time 20.00.00.00.1-0.10.1-0.2
Rest time, locomotor task time 20.10.20.30.3-0.50.5-0.3
Distance moved, locomotor task time 20.00.00.00.2-0.20.2-0.1
Vertical activity count, locomotor time 20.00.00.00.00.2-0.20.1
Light reinforcement 10.61.01.3-0.51.1-1.11.1
Light reinforcement 20.91.21.8-0.51.3-1.31.1
Bone: marrow area0.00.10.1-0.40.3-0.3-0.1
Bone: maximum diameter1.73.19.2-3.00.8-0.7-1.4
Bone: maximum force0.30.60.8-0.80.9-0.90.5
Bone: maximum moment0.61.11.5-1.01.2-1.20.6
Mean time between licks in bursts1.52.14.6-0.6-1.31.4-2.1
Mean num. licks in bursts3.84.66.41.8-2.52.5-1.6
Cd content in liver0.20.20.40.50.2-0.20.6
Co content in liver0.10.10.30.10.2-0.20.5
Cu content in liver0.10.10.5-0.70.1-0.1-0.3
Fe content in liver3.23.95.50.9-2.32.3-1.9
K content in liver3.03.04.1-1.02.0-2.01.7
Mg content in liver0.60.60.7-0.60.8-0.80.7
Mn content in liver2.42.73.9-0.41.8-1.82.0
Na content in liver1.51.64.4-2.10.2-0.1-1.3
Rb content in liver2.43.04.4-2.11.9-1.80.7
Se content in liver1.21.52.2-1.51.4-1.30.6
Sr content in liver0.90.81.6-1.2-0.30.3-1.3
Zn content in liver0.40.40.5-0.60.7-0.70.5
Bone: minimum diameter0.10.20.3-0.10.5-0.50.5
Time in familiar zone, hab. session 10.10.10.20.4-0.10.00.3
Time in novel zone, hab. session 10.60.60.8-0.80.9-0.90.4
Total zone transitions, hab. session 10.00.00.0-0.0-0.20.2-0.2
Total locomotion distance, hab. session 10.20.20.3-0.40.6-0.60.4
Locomotion velocity, hab. session 10.00.00.0-0.1-0.20.2-0.2
Time in familiar zone, hab. session 20.91.02.11.4-1.00.9-0.2
Time in novel zone, hab. session 21.41.42.9-1.71.2-1.10.3
Total zone transitions, hab. session 20.20.30.9-0.90.4-0.3-0.1
Total locomotion distance, hab. session 20.20.31.0-1.00.00.0-0.6
Locomotion velocity, hab. session 20.30.41.4-1.20.3-0.2-0.5
Novel to familiar place preference ratio0.70.71.6-1.0-0.40.4-1.3
Novelty place preference0.70.81.6-1.0-0.40.4-1.3
Time in novel zone, NPP test0.70.71.5-1.0-0.30.4-1.2
Total zone transitions, NPP test0.30.51.20.80.3-0.31.1
Total locomotion distance, NPP test0.10.10.30.30.2-0.20.6
Locomotion velocity, NPP test0.10.10.20.10.2-0.20.4
Intraocular pressure0.50.71.6-0.6-0.70.7-1.2
Delta distance traveled before/after self-admin0.30.30.40.6-0.70.6-0.2
Delta ambulatory time before/after self-admin0.50.50.80.9-0.80.8-0.2
Parametrial fat weight1.52.96.9-1.8-0.81.0-2.6
Pavlov. Cond. lever latency0.40.51.1-0.8-0.20.3-1.0
Pavlov. Cond. magazine entry latency0.91.23.31.8-0.80.70.7
Pavlov. Cond. change in total contacts0.20.20.7-0.90.3-0.2-0.2
Pavlov. Cond. index score1.01.23.41.9-0.70.60.9
Pavlov. Cond. latency score0.81.02.71.7-0.50.40.8
Pavlov. Cond. lever contacts0.40.51.31.2-0.30.30.7
Pavlov. Cond. magazine entry number1.31.73.8-2.01.2-1.1-0.4
Pavlov. Cond. intertrial magazine entries1.41.72.5-0.91.6-1.61.0
Pavlov. Cond. lever-magazine prob. diff.1.21.44.02.0-0.70.60.9
Pavlov. Cond. response bias0.60.81.91.4-0.50.40.8
Pavlov. Cond. lever latency4.15.57.3-2.52.7-2.61.1
Pavlov. Cond. magazine entry latency0.00.00.10.10.0-0.00.2
Pavlov. Cond. change in total contacts0.40.60.80.6-0.90.9-0.6
Pavlov. Cond. index score1.11.42.01.4-1.41.3-0.4
Pavlov. Cond. latency score1.01.22.11.5-1.21.2-0.2
Pavlov. Cond. lever contacts3.44.66.12.3-2.52.4-1.2
Pavlov. Cond. magazine entry number0.20.20.4-0.20.6-0.60.4
Pavlov. Cond. intertrial magazine entries0.00.00.00.0-0.20.2-0.1
Pavlov. Cond. lever-magazine prob. diff.0.91.11.91.4-1.11.1-0.2
Pavlov. Cond. response bias1.92.63.61.5-1.91.9-1.1
Time in closed arm before self-admin0.91.01.3-0.91.1-1.10.8
Time in closed arm after self-admin0.80.82.01.4-0.10.01.1
Time in open arm before self-admin1.51.63.31.8-1.31.2-0.3
Time in open arm after self-admin1.11.22.9-0.3-1.01.0-1.7
Bone: periosteal estimation0.71.42.7-1.61.2-1.20.1
Bone: periosteal perimeter1.01.63.7-1.91.2-1.1-0.2
Bone: post-yield work0.10.20.4-0.60.4-0.30.0
Progressive ratio test 1 active lever presses0.00.00.1-0.1-0.20.2-0.3
Progressive ratio test 1 breakpoint0.00.00.10.2-0.20.2-0.1
Progressive ratio test 1 inactive lever presses0.80.92.5-1.60.7-0.6-0.4
Progressive ratio test 2 active lever presses0.00.00.1-0.20.2-0.2-0.0
Progressive ratio test 2 breakpoint0.00.00.1-0.2-0.00.0-0.3
Progressive ratio test 2 inactive lever presses0.50.61.5-0.8-0.40.5-1.2
Incentive Sensitization - Responses0.10.10.2-0.2-0.30.3-0.4
Incentive Sensitization - Breakpoint0.10.10.2-0.1-0.30.3-0.4
Sum of active levers in priming session hrs 5-60.20.20.6-0.80.4-0.3-0.2
Progressive ratio0.20.20.30.10.5-0.50.6
Food seeking constrained by brief footshock4.15.07.0-1.82.6-2.61.7
Seeking ratio, punishment vs. effort0.70.81.4-1.21.0-0.90.3
Retroperitoneal fat weight0.10.40.60.3-0.70.7-0.7
Reaction time number correct0.20.30.5-0.1-0.60.7-0.7
Reaction time mean minus median2.22.94.01.5-2.02.0-1.2
Reaction time mean minus median AUC0.81.01.61.3-1.11.1-0.2
Reaction time num false alarms0.71.01.4-0.41.1-1.11.2
Reaction time num false alarms AUC1.21.72.7-0.31.4-1.41.6
Reaction time trials correct on left0.20.30.5-0.1-0.60.7-0.7
Reaction time trials on left0.20.30.5-0.0-0.70.7-0.7
Reaction time mean0.71.01.31.1-1.11.1-0.4
Reaction time mean AUC0.71.01.91.4-1.01.0-0.2
Median of all reaction times0.30.40.70.8-0.70.7-0.3
Reaction time omissions0.60.92.21.5-0.80.70.1
Reaction time false alarm rate1.72.43.7-0.31.7-1.71.9
Reaction time premature initiation rate1.11.53.71.9-0.10.01.5
Reaction time premature initiations0.60.82.11.4-0.40.30.9
Std. dev. reaction times1.82.53.31.5-1.81.8-1.1
Reaction time trials completed0.20.30.5-0.0-0.70.7-0.7
Reaction time trials AUC0.20.20.4-0.2-0.50.5-0.6
Run reversals in cocaine runway, females0.50.50.90.9-0.70.7-0.3
Run reversals in cocaine runway, males0.40.30.6-0.80.6-0.60.1
Latency to leave start box in cocaine runway0.40.40.6-0.10.7-0.80.7
Latency to leave start box in cocaine runway, F1.11.21.7-0.71.3-1.30.9
Latency to leave start box in cocaine runway, M0.30.30.80.9-0.50.5-0.0
Std. dev. time between licks in bursts0.10.20.20.1-0.50.5-0.5
Total sessions with >9 infusions0.50.50.8-0.00.8-0.80.9
Short access day 1 total inactive lever presses3.03.44.7-2.22.1-2.00.7
Short access day 10 total inactive lever presses0.10.20.40.6-0.30.30.1
Short access day 1 total infusions0.70.71.30.30.9-0.91.2
Short access day 10 total infusions0.50.61.10.20.8-0.81.0
Short access total infusions1.11.22.20.21.1-1.11.5
Short access day 1 locomotion1.71.84.01.01.0-1.12.0
Short access day 10 total locomotion0.40.40.90.60.5-0.51.0
Short access total locomotion1.61.63.41.60.4-0.51.8
One hour access (0.3 mA shock)0.00.10.1-0.10.3-0.30.0
Compulsive drug intake1.01.02.91.7-0.70.70.5
One hour access (shock baseline)0.40.51.2-1.10.5-0.4-0.5
Social response proportion1.61.83.6-1.2-0.91.0-1.9
Social responses1.31.63.3-1.5-0.60.7-1.8
Social time0.60.91.6-0.3-0.91.0-1.2
Soleus weight1.23.65.2-1.82.3-2.31.0
Bone: stiffness0.00.00.00.0-0.10.1-0.1
Tibialis anterior weight0.51.64.2-2.11.0-0.9-0.6
Time to tail flick, vehicle, before self-admin0.10.10.20.20.2-0.20.5
Time to tail flick, vehicle, after self-admin0.30.30.70.10.4-0.40.9
Time to tail flick, test, before self-admin0.20.20.50.7-0.30.20.2
Time to tail flick, test, after self-admin2.62.73.5-1.91.8-1.71.0
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.10.2-0.20.2
Delta time to tail flick, test, before/after SA0.70.61.8-1.30.6-0.6-0.1
Tibia length0.72.02.80.11.6-1.61.7
Ambulatory time before self-admin3.03.14.4-1.12.1-2.11.6
Ambulatory time after self-admin1.01.21.6-0.61.3-1.31.0
Bone: tissue strength0.10.10.3-0.2-0.20.2-0.5
Total heroin consumption0.10.10.1-0.30.3-0.3-0.0
Bone: trabecular number0.40.61.00.10.8-0.81.0
Bone: trabecular spacing0.40.51.4-1.20.2-0.1-0.7
Bone: trabecular thickness0.70.81.81.20.3-0.41.3
Bone: trabecular tissue density1.21.72.40.6-1.51.5-1.3
Water consumed over 24 hours0.81.02.0-1.2-0.50.6-1.4
Number of responses in last shaping day0.20.20.40.10.5-0.60.6