Fra10ac1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Fra10ac1 0.04 0.02 5.9e-04 0.03 0.02 0.02 0.02 3.8e-04 2.9e-03 1.8e-03 1.9e-03
2 LHb mRNA stability Fra10ac1 0.32 0.15 6.7e-03 0.06 0.04 0.02 0.06 1.9e-02 3.3e-02 1.3e-01 1.7e-02
3 Adipose intron excision ratio chr1_245381862_245382882 0.04 0.02 3.2e-04 0.02 0.02 0.01 0.01 3.5e-03 5.2e-03 1.5e-02 1.0e-02
4 Adipose gene expression Fra10ac1 0.04 0.02 2.5e-03 0.01 0.01 0 0.01 1.1e-02 7.0e-03 2.4e-01 6.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density4.98.414.8-3.63.82.4-0.6
Area under the delay curve1.11.22.20.7-0.8-1.31.5
BMI with tail0.00.20.40.5-0.30.00.6
BMI without tail0.00.10.30.6-0.40.2-0.1
Body weight0.62.73.4-1.81.81.3-1.6
Weight adjusted by age0.81.12.70.4-0.2-1.31.7
Bone surface4.78.614.6-3.83.82.0-1.2
Bone volume4.98.713.7-3.73.62.4-1.5
Breakpoint value in progressive ratio session0.20.30.60.5-0.8-0.50.1
Number of licking bursts1.52.53.11.4-1.4-1.71.8
Context. condit. distance diff. score1.01.22.5-1.00.41.6-1.1
Locomotion velocity, session 12.22.32.41.5-1.5-1.61.6
Locomotion distance, session 10.60.71.10.7-0.7-0.91.0
Locomotion velocity, session 20.20.30.6-0.1-0.80.7-0.0
Locomotion distance, session 20.20.20.70.5-0.8-0.00.1
Locomotion velocity, session 30.30.30.7-0.40.00.6-0.8
Locomotion distance, session 32.02.25.2-1.00.31.6-2.3
Stereotopy head waving bouts, day 30.10.20.60.2-0.10.10.7
Stereotopy head waving duration, day 30.50.52.10.10.1-0.21.4
Locomotion velocity, session 71.71.93.3-1.10.51.7-1.8
Locomotion distance, session 72.22.85.0-1.50.71.9-2.2
Stereotopy head waving bouts, day 70.30.41.40.20.2-0.01.2
Stereotopy head waving duration, day 70.40.51.1-0.41.00.30.9
Locomotion velocity, session 80.30.30.6-0.80.70.5-0.1
Locomotion distance, session 80.20.30.6-0.0-0.70.8-0.2
Degree of sensitization distance0.20.20.30.2-0.5-0.20.5
Degree of sensitization stereotypy0.40.41.0-0.10.8-0.11.0
Conditioned locomotion0.10.10.2-0.20.5-0.3-0.5
Cocaine response after cond. corrected0.00.00.10.00.1-0.40.2
Cocaine response after cond. not corrected0.00.00.1-0.10.1-0.30.0
Cocaine response before conditioning0.00.00.10.2-0.2-0.10.3
Saline control response2.63.55.51.9-1.6-2.31.5
Bone: connectivity density4.26.610.1-3.13.22.4-0.7
Bone: cortical apparent density0.91.32.91.0-0.9-0.51.7
Bone: cortical area4.16.38.4-2.92.82.0-2.2
Bone: cortical porosity0.30.30.90.1-0.41.00.3
Bone: cortical porosity0.70.72.3-0.60.21.5-0.5
Bone: cortical thickness0.10.20.5-0.50.7-0.1-0.3
Bone: cortical thickness0.40.51.00.6-0.3-0.61.0
Bone: cortical tissue density1.11.53.41.1-1.0-0.61.9
Condit. Reinf. active minus inactive responses0.20.20.60.2-0.50.0-0.8
Condit. Reinf. active-inactive response ratio0.10.10.30.1-0.2-0.0-0.5
Condit. Reinf. active responses0.20.20.70.2-0.3-0.0-0.9
Condit. Reinf. inactive responses0.00.00.10.10.1-0.3-0.0
Incentive salience index mean0.70.91.70.9-1.3-0.7-0.6
Condit. Reinf. lever presses2.33.35.22.1-2.3-1.80.4
Condit. Reinf. active minus inactive responses1.11.42.1-1.50.91.3-1.0
Condit. Reinf. active-inactive response ratio0.20.30.5-0.70.60.5-0.0
Condit. Reinf. active responses0.71.01.4-1.21.10.6-0.9
Condit. Reinf. inactive responses0.10.20.4-0.20.4-0.2-0.6
Condit. Reinf. lever presses0.20.20.60.00.3-0.80.5
Condit. Reinf. lever reinforcers received0.30.40.7-0.80.70.1-0.5
Conditioned reinforcement - actives1.52.64.4-1.92.11.5-0.6
Conditioned reinforcement - inactives2.43.55.6-2.41.62.1-1.0
Conditioned locomotion1.51.93.5-1.71.91.0-0.4
Patch foraging indifference point 0 sec0.10.20.3-0.20.5-0.5-0.3
Patch foraging indifference point AUC1.11.62.81.1-1.0-1.71.2
Delay disc. indifference point, 0s delay0.20.20.4-0.0-0.50.10.7
Delay disc. indifference point, 16s delay0.30.40.80.10.0-0.80.9
Delay disc. indifference point, 2s delay0.60.72.30.4-0.2-0.61.5
Delay disc. indifference point, 24s delay0.91.02.01.1-1.4-0.80.7
Delay disc. indifference point, 4s delay1.11.22.30.8-0.9-1.11.5
Delay disc. indifference point, 8s delay3.13.66.11.6-1.4-2.52.0
Indifference point function ln k2.03.66.1-1.71.42.5-1.9
Indifference point function log k2.03.66.1-1.71.42.5-1.9
Patch foraging total patch changes 0 sec0.10.20.5-0.40.7-0.4-0.3
Patch foraging total patch changes 12 sec2.22.85.71.4-0.7-2.41.8
Patch foraging total patch changes 18 sec0.91.31.91.1-0.7-1.31.4
Patch foraging total patch changes 24 sec0.10.10.3-0.2-0.1-0.4-0.5
Patch foraging total patch changes 6 sec0.50.82.50.50.0-1.60.7
Patch foraging time to switch 0 sec1.12.32.91.5-1.2-1.71.6
Patch foraging water rate 0 sec1.02.13.5-1.20.71.9-1.7
Patch foraging water rate 12 sec1.12.23.4-1.31.01.7-1.8
Patch foraging water rate 18 sec1.42.23.9-1.10.51.9-2.0
Patch foraging water rate 24 sec0.91.31.6-1.10.81.3-1.2
Patch foraging water rate 6 sec0.30.40.7-0.60.70.8-0.3
Seeking ratio, delayed vs. immediate footshock0.10.20.40.2-0.40.0-0.7
Distance traveled before self-admin0.40.50.90.7-0.90.5-0.7
Distance traveled after self-admin0.30.41.2-0.40.31.10.2
Extensor digitorum longus weight0.20.71.6-0.3-0.40.9-1.3
Bone: elastic displacement1.51.72.41.5-1.3-0.71.4
Bone: elastic work0.30.40.70.5-0.70.10.9
Bone: endosteal estimation6.714.720.4-4.54.23.6-2.8
Bone: endosteal perimeter6.413.720.3-4.54.43.1-2.2
Epididymis fat weight0.30.91.3-1.01.01.1-0.5
Delta time in closed arm before/after self-admin0.30.31.0-0.5-0.00.1-1.0
Delta time in open arm before/after self-admin0.30.30.90.5-0.40.20.9
Diff in mean of infusions in LGA sessions0.60.71.5-0.60.51.2-1.0
Delay discount exponential model param1.01.12.0-0.60.71.2-1.4
Extinction: sum of active levers before priming1.01.13.1-0.6-0.21.0-1.8
Active lever presses in extinction session 60.60.61.2-1.00.11.10.0
Bone: final force2.03.24.6-2.22.01.4-1.4
Bone: final moment2.23.55.0-2.22.21.5-1.5
Food consumed during 24 hour testing period0.30.50.9-0.70.60.4-0.9
Glucose0.50.81.6-0.40.31.1-1.3
Heart weight0.50.81.3-0.61.00.7-1.1
Delay discount hyperbolic model param0.91.01.9-0.60.71.1-1.4
Intermittent access intake day 1-15 change3.47.011.7-3.23.42.0-1.5
Intermittent access intake escalation3.46.911.0-3.13.32.2-1.6
Intermittent access intake escalation 24.45.06.6-2.62.62.1-1.5
Intermitt. access day 1 inactive lever presses0.00.10.20.3-0.3-0.40.5
Intermitt. access day 15 inactive lever presses1.42.94.9-2.22.11.5-0.5
Intermitt. access escalation Index0.20.30.70.8-0.3-0.50.2
Intermittent access day 1 total infusions0.91.52.8-1.51.01.7-0.3
Intermittent access day 15 total infusions6.19.112.3-3.53.53.0-1.8
Intermittent access terminal intake (last 3 days)5.36.99.0-3.03.02.8-1.3
Intermittent access total infusions3.33.85.4-2.22.12.3-0.9
Intermittent access day 1 locomotion0.70.91.6-1.00.91.3-0.4
Intermittent access day 15 total locomotion1.12.03.9-1.82.00.90.1
Intermittent access total locomotion1.21.42.1-1.51.21.40.1
Intermittent access standard deviation4.59.412.4-3.53.42.9-2.2
Left kidney weight0.41.73.3-1.51.80.5-1.0
Right kidney weight0.10.51.0-0.50.9-0.2-1.0
Cocaine induced anxiety0.10.10.2-0.40.40.00.1
Post-drug Anxiety0.40.40.9-0.11.0-0.80.3
Baseline Anxiety0.20.20.6-0.30.8-0.3-0.4
Tail length0.72.64.0-1.61.41.3-2.0
Length with tail1.45.98.9-2.93.01.5-2.0
Length without tail1.54.97.7-2.72.81.6-1.4
Times rat made contact with spout0.20.30.40.5-0.7-0.30.6
Lifetime Intake2.73.24.6-2.11.92.1-0.7
Liver weight, left0.40.71.3-0.81.10.2-0.9
Liver weight, right1.22.13.5-1.61.91.2-1.0
Locomotor activity0.10.10.30.3-0.60.1-0.4
Locomotor testing distance0.00.10.20.0-0.4-0.2-0.3
Locomotor testing rearing0.20.30.7-0.5-0.20.5-0.8
Locomotion in novel chamber0.91.12.5-1.10.81.6-0.4
Locomotion in novel chamber post-restriction0.10.10.3-0.50.40.10.0
Fecal boli incidents, locomotor time 10.20.30.7-0.1-0.60.9-0.3
Change in fecal boli incidents, locomotor task0.50.51.30.5-0.4-1.10.2
Time >=10cm from walls, locomotor time 12.32.55.9-1.40.91.1-2.4
Bouts of movement, locomotor time 10.30.30.70.30.4-0.60.9
Total resting periods, locomotor time 10.40.41.00.40.2-0.71.0
Rest time, locomotor task time 10.81.02.10.8-0.6-1.01.5
Distance moved, locomotor task time 10.60.93.1-0.5-0.30.6-1.7
Vertical activity count, locomotor time 10.41.01.5-1.01.00.6-1.2
Time >=10cm from walls, locomotor time 20.30.41.2-0.70.00.2-1.1
Bouts of movement, locomotor time 22.03.23.82.0-1.8-1.61.9
Total resting periods, locomotor time 21.83.23.92.0-1.8-1.61.8
Rest time, locomotor task time 20.91.11.60.9-0.6-1.21.3
Distance moved, locomotor task time 21.41.74.3-1.0-0.01.3-2.1
Vertical activity count, locomotor time 20.60.81.4-1.10.50.8-1.2
Light reinforcement 10.20.51.70.20.1-0.61.3
Light reinforcement 22.53.96.91.9-1.5-1.62.6
Bone: marrow area6.814.920.8-4.64.23.7-2.7
Bone: maximum diameter8.515.923.5-4.84.83.4-2.4
Bone: maximum force3.56.29.4-3.13.02.2-1.2
Bone: maximum moment3.86.710.0-3.13.22.3-1.3
Mean time between licks in bursts0.10.20.40.3-0.2-0.5-0.6
Mean num. licks in bursts1.21.92.9-1.21.01.7-1.5
Cd content in liver0.30.30.60.8-0.4-0.50.4
Co content in liver0.10.20.40.5-0.1-0.6-0.2
Cu content in liver3.13.77.31.2-0.2-2.42.7
Fe content in liver1.72.12.91.6-1.0-1.71.3
K content in liver1.91.83.81.4-2.0-1.00.7
Mg content in liver1.51.52.91.3-1.7-0.90.7
Mn content in liver4.34.88.12.2-1.7-1.92.8
Na content in liver3.13.45.22.1-2.3-1.61.1
Rb content in liver0.70.91.1-1.01.00.8-0.8
Se content in liver21.024.829.55.4-4.9-5.44.1
Sr content in liver0.10.10.20.1-0.0-0.20.4
Zn content in liver4.34.88.52.3-2.9-2.01.1
Bone: minimum diameter10.920.025.0-5.04.64.4-3.8
Time in familiar zone, hab. session 10.80.71.5-0.91.20.40.7
Time in novel zone, hab. session 10.60.61.50.8-1.2-0.5-0.0
Total zone transitions, hab. session 10.10.10.20.0-0.1-0.50.4
Total locomotion distance, hab. session 11.62.32.81.6-1.7-1.61.1
Locomotion velocity, hab. session 12.63.74.72.1-2.1-2.21.2
Time in familiar zone, hab. session 20.10.10.2-0.10.0-0.40.2
Time in novel zone, hab. session 20.00.00.10.10.10.30.0
Total zone transitions, hab. session 20.30.40.90.5-0.4-0.90.4
Total locomotion distance, hab. session 20.60.81.11.1-0.9-1.10.4
Locomotion velocity, hab. session 21.01.31.81.3-1.2-1.40.7
Novel to familiar place preference ratio1.31.53.8-1.20.81.90.1
Novelty place preference1.51.63.9-1.30.92.00.2
Time in novel zone, NPP test1.51.63.9-1.40.82.00.0
Total zone transitions, NPP test0.60.91.81.0-1.4-0.8-0.1
Total locomotion distance, NPP test1.92.63.51.9-1.9-1.70.8
Locomotion velocity, NPP test2.02.94.32.0-2.1-1.60.6
Intraocular pressure0.30.40.8-0.30.90.10.9
Delta distance traveled before/after self-admin1.71.83.0-1.61.71.20.2
Delta ambulatory time before/after self-admin1.82.23.4-1.81.71.50.0
Parametrial fat weight0.40.91.41.2-1.2-0.6-0.5
Pavlov. Cond. lever latency0.70.92.4-0.71.50.20.8
Pavlov. Cond. magazine entry latency0.50.61.80.3-0.80.0-1.4
Pavlov. Cond. change in total contacts0.60.62.1-0.1-0.30.6-1.4
Pavlov. Cond. index score0.50.61.20.4-1.1-0.1-1.0
Pavlov. Cond. latency score0.60.71.70.5-1.3-0.2-1.0
Pavlov. Cond. lever contacts0.80.92.30.9-1.5-0.5-0.5
Pavlov. Cond. magazine entry number0.50.61.80.4-0.0-0.61.4
Pavlov. Cond. intertrial magazine entries0.10.10.30.6-0.00.10.2
Pavlov. Cond. lever-magazine prob. diff.0.50.61.40.6-1.2-0.1-0.9
Pavlov. Cond. response bias0.40.51.60.0-0.60.3-1.3
Pavlov. Cond. lever latency0.20.30.80.1-0.60.9-0.2
Pavlov. Cond. magazine entry latency0.30.31.10.3-0.40.1-1.0
Pavlov. Cond. change in total contacts0.20.30.90.3-0.4-1.0-0.3
Pavlov. Cond. index score0.10.10.2-0.10.3-0.4-0.5
Pavlov. Cond. latency score0.10.20.3-0.30.5-0.2-0.6
Pavlov. Cond. lever contacts0.30.41.20.10.4-1.10.3
Pavlov. Cond. magazine entry number0.60.81.0-0.91.01.00.7
Pavlov. Cond. intertrial magazine entries0.30.41.1-0.60.41.0-0.2
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.10.2-0.4-0.5
Pavlov. Cond. response bias0.20.20.90.2-0.0-0.9-0.2
Time in closed arm before self-admin0.30.40.70.7-0.80.80.2
Time in closed arm after self-admin1.01.13.30.9-1.8-0.4-0.1
Time in open arm before self-admin0.30.30.9-0.40.2-0.90.2
Time in open arm after self-admin0.50.61.0-0.50.9-0.51.0
Bone: periosteal estimation7.014.821.3-4.64.53.3-2.6
Bone: periosteal perimeter5.28.912.4-3.53.52.6-2.1
Bone: post-yield work5.07.411.2-3.33.22.4-1.5
Progressive ratio test 1 active lever presses1.51.83.0-1.71.71.20.2
Progressive ratio test 1 breakpoint1.21.52.6-1.51.61.00.2
Progressive ratio test 1 inactive lever presses1.21.72.6-1.61.31.6-0.4
Progressive ratio test 2 active lever presses5.86.811.6-3.43.22.3-0.7
Progressive ratio test 2 breakpoint6.27.111.9-3.53.32.3-0.7
Progressive ratio test 2 inactive lever presses1.72.74.1-2.02.01.70.1
Incentive Sensitization - Responses4.46.29.0-3.03.02.4-1.1
Incentive Sensitization - Breakpoint5.06.59.3-3.13.02.4-1.2
Sum of active levers in priming session hrs 5-60.20.10.5-0.0-0.3-0.70.1
Progressive ratio0.30.51.01.0-0.8-0.6-0.3
Food seeking constrained by brief footshock2.22.73.2-1.61.51.6-1.8
Seeking ratio, punishment vs. effort0.81.22.4-1.51.00.9-0.9
Retroperitoneal fat weight0.00.10.10.3-0.30.2-0.1
Reaction time number correct0.40.71.2-1.01.10.7-0.3
Reaction time mean minus median1.33.24.1-1.71.81.6-2.0
Reaction time mean minus median AUC0.61.52.2-1.21.30.8-1.5
Reaction time num false alarms0.10.10.5-0.1-0.0-0.1-0.7
Reaction time num false alarms AUC0.20.31.2-0.1-0.10.0-1.1
Reaction time trials correct on left0.40.71.2-1.01.10.7-0.3
Reaction time trials on left0.40.71.1-1.01.10.7-0.4
Reaction time mean0.40.72.00.3-0.80.1-1.4
Reaction time mean AUC0.40.61.20.6-1.0-0.1-1.1
Median of all reaction times0.81.12.41.0-1.5-0.3-1.0
Reaction time omissions1.11.75.3-0.5-0.01.1-2.3
Reaction time false alarm rate0.20.20.50.3-0.4-0.3-0.7
Reaction time premature initiation rate0.30.41.0-0.40.6-0.0-1.0
Reaction time premature initiations0.71.32.2-1.11.50.4-1.2
Std. dev. reaction times1.32.35.6-1.21.11.0-2.4
Reaction time trials completed0.40.71.1-1.01.10.7-0.4
Reaction time trials AUC0.20.40.7-0.80.80.5-0.3
Run reversals in cocaine runway, females0.40.40.80.3-0.3-0.90.9
Run reversals in cocaine runway, males0.90.91.91.4-0.4-1.10.7
Latency to leave start box in cocaine runway0.91.02.0-0.90.41.1-1.4
Latency to leave start box in cocaine runway, F1.11.32.7-0.70.31.6-1.4
Latency to leave start box in cocaine runway, M0.20.20.3-0.60.3-0.3-0.5
Std. dev. time between licks in bursts1.11.52.21.3-1.0-1.51.1
Total sessions with >9 infusions0.20.20.80.10.2-0.10.9
Short access day 1 total inactive lever presses0.71.01.4-0.80.71.21.2
Short access day 10 total inactive lever presses0.20.50.90.8-0.9-0.60.0
Short access day 1 total infusions0.30.41.6-0.10.2-0.21.3
Short access day 10 total infusions0.10.10.20.2-0.00.10.5
Short access total infusions0.50.71.2-0.80.91.10.3
Short access day 1 locomotion0.60.72.30.3-0.5-0.41.5
Short access day 10 total locomotion0.30.61.01.0-1.0-0.30.6
Short access total locomotion0.80.91.61.0-1.0-0.51.3
One hour access (0.3 mA shock)10.812.418.9-4.24.33.3-1.5
Compulsive drug intake0.40.40.8-0.30.20.9-0.9
One hour access (shock baseline)2.84.47.2-2.62.71.7-0.8
Social response proportion0.70.81.1-1.01.01.00.1
Social responses1.11.42.7-1.51.60.90.1
Social time0.40.60.80.9-0.9-0.70.4
Soleus weight1.44.26.9-2.62.01.9-1.6
Bone: stiffness3.35.47.2-2.72.52.4-1.6
Tibialis anterior weight0.20.61.4-0.6-0.40.8-1.2
Time to tail flick, vehicle, before self-admin2.62.76.11.6-0.7-1.32.5
Time to tail flick, vehicle, after self-admin0.30.41.00.3-1.00.1-0.8
Time to tail flick, test, before self-admin1.51.63.2-1.30.61.8-1.0
Time to tail flick, test, after self-admin1.21.22.10.5-1.1-1.51.2
Delta time to tail flick, vehicle, before/after SA1.71.74.5-1.1-0.01.0-2.1
Delta time to tail flick, test, before/after SA1.51.62.91.0-0.9-1.71.3
Tibia length0.20.61.1-0.91.1-0.2-0.7
Ambulatory time before self-admin0.50.71.61.0-1.30.1-0.4
Ambulatory time after self-admin0.60.82.6-0.60.31.60.0
Bone: tissue strength0.50.50.8-0.70.50.6-0.9
Total heroin consumption0.10.10.1-0.30.20.2-0.3
Bone: trabecular number4.57.412.6-3.23.52.5-0.6
Bone: trabecular spacing1.11.42.31.5-1.5-1.1-0.3
Bone: trabecular thickness3.74.66.8-2.62.42.0-1.3
Bone: trabecular tissue density0.40.60.9-0.90.90.9-0.1
Water consumed over 24 hours0.20.20.60.0-0.60.8-0.2
Number of responses in last shaping day1.11.22.4-0.31.4-0.71.5