Fra10ac1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Fra10ac1 0.04 0.02 5.9e-04 0.03 0.02 0.02 0.02 3.8e-04 2.9e-03 1.8e-03 1.8e-03
2 LHb mRNA stability Fra10ac1 0.32 0.15 6.7e-03 0.06 0.04 0.02 0.06 1.9e-02 3.3e-02 1.3e-01 1.7e-02
3 Adipose intron excision ratio chr1_245381862_245382882 0.04 0.02 3.2e-04 0.02 0.02 0.01 0.01 3.5e-03 5.2e-03 1.5e-02 1.0e-02
4 Adipose gene expression Fra10ac1 0.04 0.02 2.5e-03 0.01 0.01 0 0 1.1e-02 7.0e-03 2.4e-01 7.6e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density4.68.414.83.63.8-2.4-0.6
Area under the delay curve0.81.22.2-0.7-0.81.31.5
BMI with tail0.00.20.4-0.5-0.2-0.00.6
BMI without tail0.00.10.3-0.6-0.4-0.2-0.1
Body weight0.62.73.41.81.8-1.3-1.6
Weight adjusted by age0.41.12.7-0.4-0.21.31.7
Bone surface4.38.614.53.83.8-2.0-1.2
Bone volume4.48.713.73.73.6-2.4-1.5
Breakpoint value in progressive ratio session0.20.30.6-0.5-0.80.50.1
Number of licking bursts0.82.53.1-1.4-1.41.71.8
Context. condit. distance diff. score1.01.22.51.00.4-1.6-1.1
Locomotion velocity, session 12.12.32.4-1.5-1.51.61.6
Locomotion distance, session 10.60.71.1-0.7-0.70.91.0
Locomotion velocity, session 20.20.30.60.1-0.8-0.7-0.0
Locomotion distance, session 20.20.30.7-0.5-0.80.00.1
Locomotion velocity, session 30.30.30.70.40.0-0.6-0.8
Locomotion distance, session 31.92.25.21.00.3-1.6-2.3
Stereotopy head waving bouts, day 30.10.20.6-0.2-0.1-0.10.7
Stereotopy head waving duration, day 30.40.52.1-0.10.10.21.4
Locomotion velocity, session 71.71.93.31.10.5-1.7-1.8
Locomotion distance, session 72.22.85.01.50.7-1.9-2.2
Stereotopy head waving bouts, day 70.30.41.4-0.20.20.01.2
Stereotopy head waving duration, day 70.40.51.10.41.1-0.30.9
Locomotion velocity, session 80.30.30.60.80.7-0.5-0.1
Locomotion distance, session 80.20.30.60.0-0.8-0.8-0.2
Degree of sensitization distance0.20.20.3-0.2-0.50.20.5
Degree of sensitization stereotypy0.40.41.00.10.80.11.0
Conditioned locomotion0.10.10.20.20.50.3-0.5
Cocaine response after cond. corrected0.00.00.1-0.00.10.40.2
Cocaine response after cond. not corrected0.00.00.10.10.10.30.0
Cocaine response before conditioning0.00.00.1-0.2-0.20.10.3
Saline control response2.53.55.5-1.9-1.62.31.5
Bone: connectivity density4.16.610.13.13.2-2.4-0.7
Bone: cortical apparent density0.81.32.9-1.0-0.90.51.7
Bone: cortical area3.96.38.42.92.8-2.0-2.2
Bone: cortical porosity0.30.30.9-0.1-0.4-1.00.3
Bone: cortical porosity0.70.72.30.60.2-1.5-0.5
Bone: cortical thickness0.10.20.50.50.70.1-0.3
Bone: cortical thickness0.40.51.0-0.6-0.30.61.0
Bone: cortical tissue density0.91.53.4-1.1-1.00.61.9
Condit. Reinf. active minus inactive responses0.20.20.6-0.2-0.5-0.0-0.8
Condit. Reinf. active-inactive response ratio0.10.10.3-0.1-0.20.0-0.5
Condit. Reinf. active responses0.20.20.7-0.2-0.30.0-0.9
Condit. Reinf. inactive responses0.00.00.1-0.10.10.3-0.0
Incentive salience index mean0.70.91.8-0.9-1.30.7-0.6
Condit. Reinf. lever presses2.23.35.2-2.1-2.31.80.4
Condit. Reinf. active minus inactive responses0.91.42.11.50.9-1.3-1.0
Condit. Reinf. active-inactive response ratio0.20.30.50.70.6-0.5-0.0
Condit. Reinf. active responses0.71.01.41.21.1-0.6-0.9
Condit. Reinf. inactive responses0.10.20.40.20.40.2-0.6
Condit. Reinf. lever presses0.20.20.6-0.00.30.80.5
Condit. Reinf. lever reinforcers received0.30.40.70.80.7-0.1-0.5
Conditioned reinforcement - actives0.72.64.41.92.1-1.5-0.6
Conditioned reinforcement - inactives1.33.45.62.41.6-2.1-1.0
Conditioned locomotion1.31.93.51.71.9-1.0-0.4
Patch foraging indifference point 0 sec0.10.20.30.20.60.5-0.3
Patch foraging indifference point AUC0.71.62.8-1.1-1.01.71.2
Delay disc. indifference point, 0s delay0.10.20.40.0-0.5-0.10.7
Delay disc. indifference point, 16s delay0.30.40.8-0.10.00.80.9
Delay disc. indifference point, 2s delay0.60.72.3-0.4-0.20.61.5
Delay disc. indifference point, 24s delay0.71.02.0-1.1-1.40.80.7
Delay disc. indifference point, 4s delay1.11.22.3-0.8-0.91.11.5
Delay disc. indifference point, 8s delay2.13.66.1-1.6-1.42.52.0
Indifference point function ln k1.23.66.11.71.3-2.5-1.9
Indifference point function log k1.23.66.11.71.3-2.5-1.9
Patch foraging total patch changes 0 sec0.10.20.50.40.70.4-0.3
Patch foraging total patch changes 12 sec2.12.85.7-1.4-0.72.41.8
Patch foraging total patch changes 18 sec0.61.31.9-1.1-0.71.31.4
Patch foraging total patch changes 24 sec0.00.10.30.2-0.10.4-0.5
Patch foraging total patch changes 6 sec0.50.82.5-0.50.01.60.7
Patch foraging time to switch 0 sec0.62.32.9-1.5-1.21.71.6
Patch foraging water rate 0 sec0.62.13.51.20.7-1.9-1.7
Patch foraging water rate 12 sec0.52.23.41.31.0-1.7-1.8
Patch foraging water rate 18 sec1.02.23.91.10.5-1.9-2.0
Patch foraging water rate 24 sec0.91.31.61.10.8-1.3-1.2
Patch foraging water rate 6 sec0.30.40.70.60.7-0.8-0.3
Seeking ratio, delayed vs. immediate footshock0.10.20.4-0.2-0.4-0.0-0.7
Distance traveled before self-admin0.20.50.9-0.7-1.0-0.5-0.7
Distance traveled after self-admin0.20.41.20.40.3-1.10.2
Extensor digitorum longus weight0.20.71.60.3-0.4-0.9-1.3
Bone: elastic displacement1.31.72.4-1.5-1.30.71.4
Bone: elastic work0.30.40.7-0.5-0.7-0.10.9
Bone: endosteal estimation6.014.620.44.54.1-3.6-2.8
Bone: endosteal perimeter5.613.620.34.54.4-3.1-2.2
Epididymis fat weight0.20.91.31.01.0-1.1-0.5
Delta time in closed arm before/after self-admin0.30.31.00.5-0.0-0.1-1.0
Delta time in open arm before/after self-admin0.30.30.9-0.5-0.4-0.20.9
Diff in mean of infusions in LGA sessions0.40.71.50.60.5-1.2-1.0
Delay discount exponential model param0.81.12.00.60.7-1.2-1.4
Extinction: sum of active levers before priming0.71.13.10.6-0.2-1.0-1.8
Active lever presses in extinction session 60.60.61.21.00.1-1.10.0
Bone: final force1.93.24.62.22.0-1.4-1.4
Bone: final moment2.23.55.02.22.2-1.5-1.5
Food consumed during 24 hour testing period0.20.50.90.70.6-0.4-0.9
Glucose0.50.81.60.40.3-1.1-1.3
Heart weight0.50.81.30.61.0-0.7-1.1
Delay discount hyperbolic model param0.81.01.90.60.7-1.1-1.4
Intermittent access intake day 1-15 change1.37.011.73.23.4-2.0-1.5
Intermittent access intake escalation1.36.911.03.13.3-2.2-1.6
Intermittent access intake escalation 23.05.06.62.62.6-2.1-1.5
Intermitt. access day 1 inactive lever presses0.00.10.2-0.3-0.30.40.5
Intermitt. access day 15 inactive lever presses0.52.94.92.22.1-1.5-0.5
Intermitt. access escalation Index0.10.30.7-0.8-0.30.50.2
Intermittent access day 1 total infusions0.51.52.81.51.0-1.7-0.3
Intermittent access day 15 total infusions3.79.112.33.53.5-3.0-1.8
Intermittent access terminal intake (last 3 days)4.06.99.03.03.0-2.8-1.3
Intermittent access total infusions3.23.85.42.22.1-2.3-0.9
Intermittent access day 1 locomotion0.50.91.61.00.9-1.3-0.4
Intermittent access day 15 total locomotion0.52.03.91.82.0-0.90.1
Intermittent access total locomotion1.21.42.11.51.2-1.40.1
Intermittent access standard deviation1.89.312.43.53.4-2.9-2.2
Left kidney weight0.21.73.31.51.8-0.5-1.0
Right kidney weight0.10.51.00.50.90.2-1.0
Cocaine induced anxiety0.00.10.20.40.4-0.00.1
Post-drug Anxiety0.40.40.90.11.00.80.3
Baseline Anxiety0.10.20.60.30.80.3-0.4
Tail length0.52.64.01.61.4-1.3-2.0
Length with tail1.35.98.82.93.0-1.5-2.0
Length without tail0.94.97.72.72.8-1.6-1.4
Times rat made contact with spout0.20.30.4-0.5-0.70.30.6
Lifetime Intake2.63.24.62.11.9-2.1-0.7
Liver weight, left0.40.71.30.81.1-0.2-0.9
Liver weight, right1.22.13.51.61.9-1.2-1.0
Locomotor activity0.10.10.3-0.3-0.6-0.1-0.4
Locomotor testing distance0.00.10.2-0.0-0.40.2-0.3
Locomotor testing rearing0.10.30.70.5-0.2-0.5-0.8
Locomotion in novel chamber0.81.12.51.10.8-1.6-0.4
Locomotion in novel chamber post-restriction0.00.10.30.50.4-0.10.0
Fecal boli incidents, locomotor time 10.10.30.70.1-0.6-0.9-0.3
Change in fecal boli incidents, locomotor task0.40.51.3-0.5-0.41.10.2
Time >=10cm from walls, locomotor time 12.02.55.91.40.9-1.1-2.4
Bouts of movement, locomotor time 10.20.30.7-0.30.40.60.9
Total resting periods, locomotor time 10.30.41.0-0.40.20.71.0
Rest time, locomotor task time 10.61.02.1-0.8-0.61.01.5
Distance moved, locomotor task time 10.30.93.10.5-0.3-0.6-1.7
Vertical activity count, locomotor time 10.11.01.51.01.0-0.6-1.2
Time >=10cm from walls, locomotor time 20.20.41.20.70.0-0.2-1.1
Bouts of movement, locomotor time 21.03.23.8-2.0-1.81.61.9
Total resting periods, locomotor time 20.83.23.9-2.0-1.81.61.8
Rest time, locomotor task time 20.61.11.6-0.9-0.61.21.3
Distance moved, locomotor task time 21.31.74.31.0-0.0-1.3-2.1
Vertical activity count, locomotor time 20.40.81.41.10.5-0.8-1.2
Light reinforcement 10.10.51.7-0.20.10.61.3
Light reinforcement 21.73.96.9-1.9-1.51.62.6
Bone: marrow area6.114.820.84.64.2-3.7-2.7
Bone: maximum diameter7.915.923.54.84.8-3.4-2.4
Bone: maximum force3.16.29.43.13.0-2.2-1.2
Bone: maximum moment3.66.79.93.13.2-2.3-1.3
Mean time between licks in bursts0.00.20.4-0.3-0.20.5-0.6
Mean num. licks in bursts0.71.92.91.21.0-1.7-1.5
Cd content in liver0.30.30.6-0.8-0.40.50.4
Co content in liver0.10.20.4-0.5-0.10.6-0.2
Cu content in liver3.13.77.3-1.2-0.22.42.7
Fe content in liver1.72.12.9-1.6-1.01.71.3
K content in liver1.81.83.8-1.4-2.01.00.7
Mg content in liver1.41.52.9-1.3-1.70.90.7
Mn content in liver4.24.88.1-2.2-1.61.92.8
Na content in liver3.03.45.2-2.1-2.31.61.1
Rb content in liver0.70.91.01.01.0-0.8-0.8
Se content in liver21.024.829.5-5.4-4.95.44.1
Sr content in liver0.10.10.2-0.1-0.00.20.4
Zn content in liver4.14.88.5-2.3-2.92.01.1
Bone: minimum diameter10.419.925.05.04.6-4.4-3.8
Time in familiar zone, hab. session 10.70.71.50.91.2-0.40.7
Time in novel zone, hab. session 10.60.61.5-0.8-1.20.5-0.0
Total zone transitions, hab. session 10.10.10.2-0.0-0.10.50.4
Total locomotion distance, hab. session 11.62.32.8-1.6-1.71.61.1
Locomotion velocity, hab. session 12.63.74.7-2.1-2.12.21.2
Time in familiar zone, hab. session 20.00.10.20.10.00.40.2
Time in novel zone, hab. session 20.00.00.1-0.10.1-0.30.0
Total zone transitions, hab. session 20.30.40.9-0.5-0.40.90.4
Total locomotion distance, hab. session 20.60.81.1-1.1-0.91.10.4
Locomotion velocity, hab. session 21.01.31.8-1.3-1.21.40.7
Novel to familiar place preference ratio1.11.53.81.20.8-1.90.1
Novelty place preference1.31.63.91.30.9-2.00.2
Time in novel zone, NPP test1.31.63.91.40.8-2.00.0
Total zone transitions, NPP test0.60.91.8-1.0-1.40.8-0.1
Total locomotion distance, NPP test1.82.63.5-1.9-1.91.70.8
Locomotion velocity, NPP test2.02.84.3-2.0-2.11.60.6
Intraocular pressure0.30.40.80.30.9-0.10.9
Delta distance traveled before/after self-admin1.61.83.01.61.7-1.20.2
Delta ambulatory time before/after self-admin1.32.23.41.81.8-1.50.0
Parametrial fat weight0.40.91.4-1.2-1.20.6-0.5
Pavlov. Cond. lever latency0.70.92.40.71.6-0.20.8
Pavlov. Cond. magazine entry latency0.50.61.8-0.3-0.8-0.0-1.4
Pavlov. Cond. change in total contacts0.60.62.10.1-0.3-0.6-1.4
Pavlov. Cond. index score0.50.61.2-0.4-1.10.1-1.0
Pavlov. Cond. latency score0.60.71.7-0.5-1.30.2-1.0
Pavlov. Cond. lever contacts0.80.92.3-0.9-1.50.5-0.5
Pavlov. Cond. magazine entry number0.50.61.8-0.4-0.00.61.4
Pavlov. Cond. intertrial magazine entries0.10.10.3-0.6-0.0-0.10.2
Pavlov. Cond. lever-magazine prob. diff.0.50.61.4-0.6-1.20.1-0.9
Pavlov. Cond. response bias0.40.51.6-0.0-0.6-0.3-1.3
Pavlov. Cond. lever latency0.20.30.8-0.1-0.6-0.9-0.2
Pavlov. Cond. magazine entry latency0.20.31.1-0.3-0.4-0.1-1.0
Pavlov. Cond. change in total contacts0.10.30.9-0.3-0.41.0-0.3
Pavlov. Cond. index score0.10.10.20.10.30.4-0.5
Pavlov. Cond. latency score0.10.20.30.30.50.2-0.6
Pavlov. Cond. lever contacts0.30.41.2-0.10.41.10.3
Pavlov. Cond. magazine entry number0.60.81.00.91.0-1.00.7
Pavlov. Cond. intertrial magazine entries0.20.41.10.60.4-1.0-0.2
Pavlov. Cond. lever-magazine prob. diff.0.10.10.30.10.20.4-0.5
Pavlov. Cond. response bias0.20.20.9-0.2-0.10.9-0.2
Time in closed arm before self-admin0.30.40.7-0.7-0.8-0.80.2
Time in closed arm after self-admin0.91.13.3-0.9-1.80.4-0.1
Time in open arm before self-admin0.20.30.90.40.20.90.2
Time in open arm after self-admin0.50.61.00.50.90.51.0
Bone: periosteal estimation6.214.821.34.64.5-3.3-2.6
Bone: periosteal perimeter4.58.912.43.53.5-2.6-2.1
Bone: post-yield work4.37.411.23.33.2-2.4-1.5
Progressive ratio test 1 active lever presses1.01.83.01.71.7-1.20.2
Progressive ratio test 1 breakpoint0.91.52.61.51.6-1.00.2
Progressive ratio test 1 inactive lever presses0.71.72.61.61.3-1.6-0.4
Progressive ratio test 2 active lever presses4.86.811.63.43.2-2.3-0.7
Progressive ratio test 2 breakpoint5.67.111.93.53.3-2.3-0.7
Progressive ratio test 2 inactive lever presses0.92.74.12.02.0-1.70.1
Incentive Sensitization - Responses2.26.29.03.03.0-2.4-1.1
Incentive Sensitization - Breakpoint2.86.49.33.13.0-2.4-1.2
Sum of active levers in priming session hrs 5-60.20.20.50.0-0.30.70.1
Progressive ratio0.20.51.0-1.0-0.80.6-0.3
Food seeking constrained by brief footshock2.12.73.21.61.5-1.6-1.8
Seeking ratio, punishment vs. effort0.51.22.41.51.0-0.9-0.9
Retroperitoneal fat weight0.00.10.1-0.3-0.3-0.2-0.1
Reaction time number correct0.20.71.21.01.1-0.7-0.3
Reaction time mean minus median0.53.24.11.71.8-1.6-2.0
Reaction time mean minus median AUC0.21.52.21.21.3-0.8-1.5
Reaction time num false alarms0.10.10.50.1-0.00.1-0.7
Reaction time num false alarms AUC0.10.31.20.1-0.1-0.0-1.1
Reaction time trials correct on left0.20.71.21.01.1-0.7-0.3
Reaction time trials on left0.20.71.11.01.1-0.7-0.4
Reaction time mean0.30.72.0-0.3-0.8-0.1-1.4
Reaction time mean AUC0.30.61.2-0.6-1.00.1-1.1
Median of all reaction times0.71.12.4-1.0-1.60.3-1.0
Reaction time omissions1.01.75.30.5-0.0-1.1-2.3
Reaction time false alarm rate0.20.20.5-0.3-0.50.3-0.7
Reaction time premature initiation rate0.20.41.00.40.60.0-1.0
Reaction time premature initiations0.41.32.21.11.5-0.4-1.2
Std. dev. reaction times0.72.35.61.21.1-1.0-2.4
Reaction time trials completed0.20.71.11.01.1-0.7-0.4
Reaction time trials AUC0.10.40.70.80.8-0.5-0.3
Run reversals in cocaine runway, females0.40.40.8-0.3-0.30.90.9
Run reversals in cocaine runway, males0.80.91.9-1.4-0.41.10.7
Latency to leave start box in cocaine runway0.71.02.00.90.4-1.1-1.4
Latency to leave start box in cocaine runway, F1.01.32.70.70.3-1.6-1.4
Latency to leave start box in cocaine runway, M0.20.20.30.60.30.3-0.5
Std. dev. time between licks in bursts0.81.52.2-1.3-1.01.51.1
Total sessions with >9 infusions0.20.20.8-0.10.20.10.9
Short access day 1 total inactive lever presses0.51.01.40.80.7-1.21.2
Short access day 10 total inactive lever presses0.10.50.9-0.8-0.90.60.0
Short access day 1 total infusions0.20.41.60.10.20.21.3
Short access day 10 total infusions0.00.10.2-0.2-0.0-0.10.5
Short access total infusions0.50.71.20.80.9-1.10.3
Short access day 1 locomotion0.40.72.3-0.3-0.50.41.5
Short access day 10 total locomotion0.10.61.0-1.0-1.00.30.6
Short access total locomotion0.60.91.6-1.0-1.00.51.3
One hour access (0.3 mA shock)10.512.418.94.24.3-3.3-1.5
Compulsive drug intake0.30.40.80.30.2-0.9-0.9
One hour access (shock baseline)1.74.47.22.62.7-1.7-0.8
Social response proportion0.60.81.11.01.0-1.00.1
Social responses1.11.42.71.51.6-0.90.1
Social time0.40.60.8-0.9-0.80.70.4
Soleus weight1.44.26.92.62.0-1.9-1.6
Bone: stiffness3.05.47.22.72.5-2.4-1.6
Tibialis anterior weight0.20.61.40.6-0.4-0.8-1.2
Time to tail flick, vehicle, before self-admin2.22.76.1-1.6-0.71.32.5
Time to tail flick, vehicle, after self-admin0.20.41.0-0.3-1.0-0.1-0.8
Time to tail flick, test, before self-admin1.41.63.21.30.6-1.8-1.0
Time to tail flick, test, after self-admin1.21.22.1-0.5-1.11.51.2
Delta time to tail flick, vehicle, before/after SA1.51.74.51.1-0.0-1.0-2.1
Delta time to tail flick, test, before/after SA1.31.62.9-1.0-0.91.71.3
Tibia length0.20.61.10.91.10.2-0.7
Ambulatory time before self-admin0.20.71.6-1.0-1.3-0.1-0.4
Ambulatory time after self-admin0.50.72.60.60.3-1.60.0
Bone: tissue strength0.40.50.80.70.5-0.6-0.9
Total heroin consumption0.10.10.10.30.2-0.2-0.3
Bone: trabecular number3.97.412.63.23.5-2.5-0.6
Bone: trabecular spacing1.01.42.3-1.5-1.51.1-0.3
Bone: trabecular thickness3.34.66.82.62.4-2.0-1.3
Bone: trabecular tissue density0.40.60.90.90.9-0.9-0.1
Water consumed over 24 hours0.10.20.6-0.0-0.6-0.8-0.2
Number of responses in last shaping day0.91.22.40.31.40.71.5