Flacc1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver mRNA stability Flacc1 0.04 0.03 5.6e-03 0.03 0.01 0.02 0.03 1.8e-04 8.0e-03 9.0e-04 4.4e-04
2 Liver gene expression Flacc1 0.14 0.07 1.8e-06 0.06 0.05 0.06 0.06 7.7e-07 2.1e-06 1.0e-06 5.2e-07
3 Liver intron excision ratio chr9_67810932_67816288 0.06 0.03 8.1e-06 0.01 0.04 0.03 0.03 1.7e-02 3.3e-05 1.4e-04 6.4e-04
4 Adipose gene expression Flacc1 0.07 0.04 6.1e-05 0.01 0.03 0.03 0.01 2.7e-02 8.1e-04 4.7e-04 1.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.62.94.8-1.70.12.2-1.9
Area under the delay curve0.00.00.1-0.0-0.2-0.10.4
BMI with tail3.612.724.04.9-4.5-2.5-0.2
BMI without tail0.52.86.81.9-2.6-0.60.6
Body weight0.10.30.7-0.7-0.20.9-0.2
Weight adjusted by age0.41.11.8-1.00.41.3-1.2
Bone surface1.93.67.2-2.70.91.9-1.7
Bone volume1.73.35.6-2.40.72.0-1.8
Breakpoint value in progressive ratio session0.40.70.9-0.80.80.7-0.9
Number of licking bursts0.10.40.6-0.40.60.5-0.8
Context. condit. distance diff. score0.91.13.50.60.60.51.9
Locomotion velocity, session 11.61.84.91.1-0.5-0.92.2
Locomotion distance, session 10.40.60.90.9-1.00.40.5
Locomotion velocity, session 20.50.50.90.6-1.0-0.11.0
Locomotion distance, session 21.11.55.10.7-2.3-0.40.4
Locomotion velocity, session 30.80.92.60.6-0.70.41.6
Locomotion distance, session 30.30.30.6-0.60.40.60.8
Stereotopy head waving bouts, day 30.60.71.41.2-0.5-1.0-0.4
Stereotopy head waving duration, day 31.11.42.41.6-1.5-0.8-0.6
Locomotion velocity, session 71.01.12.21.5-0.9-0.90.9
Locomotion distance, session 70.40.51.40.3-0.3-0.61.2
Stereotopy head waving bouts, day 70.91.12.3-1.10.81.5-0.2
Stereotopy head waving duration, day 70.40.51.4-0.2-0.61.2-0.3
Locomotion velocity, session 80.50.61.90.2-0.10.81.4
Locomotion distance, session 80.50.72.40.4-0.30.51.5
Degree of sensitization distance0.30.40.60.8-0.6-0.70.0
Degree of sensitization stereotypy1.51.63.8-1.50.42.00.4
Conditioned locomotion0.40.51.5-1.20.30.10.6
Cocaine response after cond. corrected1.01.52.2-1.51.11.31.1
Cocaine response after cond. not corrected2.02.94.7-2.11.52.2-0.6
Cocaine response before conditioning2.83.411.4-0.70.51.2-3.4
Saline control response0.30.51.1-0.50.11.0-0.7
Bone: connectivity density1.62.65.2-1.0-1.01.7-2.3
Bone: cortical apparent density2.53.98.82.4-0.3-3.01.0
Bone: cortical area0.61.01.9-1.11.4-1.0-0.2
Bone: cortical porosity2.72.94.8-2.12.21.3-0.6
Bone: cortical porosity3.94.36.9-2.62.31.8-1.3
Bone: cortical thickness0.91.55.40.80.3-2.30.2
Bone: cortical thickness0.40.51.11.0-0.1-0.9-0.6
Bone: cortical tissue density2.64.18.72.5-0.4-3.01.0
Condit. Reinf. active minus inactive responses1.31.52.9-0.81.40.5-1.7
Condit. Reinf. active-inactive response ratio0.40.51.5-0.20.60.1-1.2
Condit. Reinf. active responses1.62.02.9-1.61.70.9-1.4
Condit. Reinf. inactive responses0.30.41.0-1.00.80.20.1
Incentive salience index mean2.12.74.8-1.41.90.9-2.2
Condit. Reinf. lever presses1.11.63.0-1.31.70.8-1.1
Condit. Reinf. active minus inactive responses2.33.54.8-2.22.02.0-1.1
Condit. Reinf. active-inactive response ratio1.62.54.5-1.32.11.6-1.1
Condit. Reinf. active responses2.23.14.8-2.22.11.6-1.0
Condit. Reinf. inactive responses0.20.30.7-0.90.5-0.0-0.2
Condit. Reinf. lever presses0.60.82.00.21.1-0.0-1.4
Condit. Reinf. lever reinforcers received2.33.24.6-2.12.11.6-1.1
Conditioned reinforcement - actives0.10.30.60.6-0.2-0.8-0.5
Conditioned reinforcement - inactives0.41.12.8-0.81.7-1.00.2
Conditioned locomotion0.60.91.31.0-1.1-1.10.3
Patch foraging indifference point 0 sec0.20.40.80.7-0.3-0.9-0.7
Patch foraging indifference point AUC0.30.71.2-0.81.10.1-1.0
Delay disc. indifference point, 0s delay1.61.83.81.6-1.9-0.8-0.0
Delay disc. indifference point, 16s delay0.50.71.4-0.80.61.2-0.5
Delay disc. indifference point, 2s delay0.80.92.11.1-1.4-0.40.3
Delay disc. indifference point, 24s delay0.20.31.1-0.3-0.1-0.0-1.1
Delay disc. indifference point, 4s delay0.60.60.90.8-0.6-0.71.0
Delay disc. indifference point, 8s delay0.30.51.6-1.30.50.40.4
Indifference point function ln k0.10.30.70.3-0.60.30.9
Indifference point function log k0.10.30.70.3-0.60.30.9
Patch foraging total patch changes 0 sec0.20.71.11.0-0.4-0.8-1.1
Patch foraging total patch changes 12 sec0.40.51.00.30.5-1.0-0.9
Patch foraging total patch changes 18 sec0.81.93.31.6-0.6-1.8-1.2
Patch foraging total patch changes 24 sec0.20.61.5-0.40.90.1-1.2
Patch foraging total patch changes 6 sec0.61.03.30.5-0.8-0.2-1.8
Patch foraging time to switch 0 sec0.10.30.80.7-0.9-0.2-0.1
Patch foraging water rate 0 sec0.10.30.6-0.80.70.20.2
Patch foraging water rate 12 sec0.10.51.5-0.1-0.61.2-0.5
Patch foraging water rate 18 sec0.30.60.9-0.50.70.8-0.9
Patch foraging water rate 24 sec0.30.51.3-0.3-0.71.2-0.1
Patch foraging water rate 6 sec0.10.10.40.2-0.60.10.3
Seeking ratio, delayed vs. immediate footshock0.81.12.9-1.0-0.51.7-0.6
Distance traveled before self-admin0.81.83.6-1.91.11.3-0.8
Distance traveled after self-admin0.10.20.3-0.6-0.2-0.1-0.5
Extensor digitorum longus weight1.55.911.02.4-3.3-2.6-0.3
Bone: elastic displacement0.30.40.60.7-0.20.6-0.8
Bone: elastic work0.20.30.9-0.20.10.4-1.0
Bone: endosteal estimation1.74.37.0-2.62.01.8-1.8
Bone: endosteal perimeter1.43.56.7-2.61.61.9-1.2
Epididymis fat weight0.10.50.7-0.7-0.8-0.20.8
Delta time in closed arm before/after self-admin0.30.20.4-0.50.60.4-0.4
Delta time in open arm before/after self-admin3.64.27.3-2.72.61.6-0.3
Diff in mean of infusions in LGA sessions1.12.03.8-0.60.41.9-2.0
Delay discount exponential model param0.00.00.00.10.10.0-0.2
Extinction: sum of active levers before priming0.30.51.2-0.50.20.7-1.1
Active lever presses in extinction session 60.50.50.9-0.60.90.20.9
Bone: final force0.91.52.7-1.61.10.0-1.4
Bone: final moment0.71.22.9-1.10.7-0.1-1.7
Food consumed during 24 hour testing period0.51.02.11.4-1.0-1.0-0.0
Glucose0.91.42.51.4-1.6-1.0-0.3
Heart weight1.32.23.5-1.50.21.7-1.9
Delay discount hyperbolic model param0.00.10.20.10.20.2-0.4
Intermittent access intake day 1-15 change0.10.71.60.9-0.70.1-1.3
Intermittent access intake escalation0.21.12.51.1-0.9-0.1-1.6
Intermittent access intake escalation 20.40.71.5-0.20.21.0-1.2
Intermitt. access day 1 inactive lever presses0.33.56.42.5-1.5-2.3-0.3
Intermitt. access day 15 inactive lever presses0.10.82.30.7-0.5-0.5-1.5
Intermitt. access escalation Index0.51.73.61.0-0.9-1.91.2
Intermittent access day 1 total infusions0.10.30.40.60.5-0.70.4
Intermittent access day 15 total infusions0.71.83.51.9-0.8-1.4-1.0
Intermittent access terminal intake (last 3 days)0.91.63.41.9-0.7-1.1-1.1
Intermittent access total infusions0.81.02.11.4-0.4-1.2-0.6
Intermittent access day 1 locomotion0.30.61.40.90.3-1.2-0.1
Intermittent access day 15 total locomotion0.10.51.20.5-0.1-0.6-1.1
Intermittent access total locomotion0.50.61.31.1-0.4-0.9-0.1
Intermittent access standard deviation0.10.31.21.10.20.0-0.2
Left kidney weight0.32.54.80.7-2.1-0.2-2.2
Right kidney weight0.32.26.40.2-2.50.3-1.5
Cocaine induced anxiety0.10.30.7-0.1-0.9-0.70.2
Post-drug Anxiety0.40.40.9-0.1-1.00.30.8
Baseline Anxiety0.61.02.4-0.20.31.61.1
Tail length2.312.528.6-5.33.52.90.7
Length with tail3.515.531.1-5.64.23.6-0.1
Length without tail1.05.18.1-2.82.22.3-1.5
Times rat made contact with spout1.01.11.71.3-1.0-0.81.1
Lifetime Intake0.91.22.71.6-0.7-1.2-0.5
Liver weight, left0.61.02.0-1.40.80.70.9
Liver weight, right1.83.16.8-1.30.31.9-2.6
Locomotor activity0.50.81.40.7-1.1-1.2-0.3
Locomotor testing distance0.71.72.71.3-1.6-1.0-1.3
Locomotor testing rearing0.00.00.10.0-0.2-0.20.3
Locomotion in novel chamber2.93.99.32.0-1.50.4-3.1
Locomotion in novel chamber post-restriction0.30.92.6-0.60.60.7-1.6
Fecal boli incidents, locomotor time 10.30.70.8-0.70.90.9-0.9
Change in fecal boli incidents, locomotor task0.40.40.70.7-0.7-0.80.0
Time >=10cm from walls, locomotor time 10.20.20.4-0.40.6-0.60.0
Bouts of movement, locomotor time 10.70.93.6-0.11.9-0.3-0.0
Total resting periods, locomotor time 10.91.02.50.71.6-1.00.5
Rest time, locomotor task time 12.13.36.61.50.4-2.62.1
Distance moved, locomotor task time 10.92.76.2-2.50.51.9-0.9
Vertical activity count, locomotor time 10.10.81.8-1.40.31.1-0.0
Time >=10cm from walls, locomotor time 20.20.62.00.2-1.4-0.40.1
Bouts of movement, locomotor time 20.00.20.20.2-0.40.4-0.5
Total resting periods, locomotor time 20.00.10.20.3-0.10.2-0.5
Rest time, locomotor task time 21.22.04.11.10.9-2.01.4
Distance moved, locomotor task time 20.60.81.1-1.0-0.70.8-1.0
Vertical activity count, locomotor time 20.92.26.41.3-2.5-0.7-0.5
Light reinforcement 11.35.99.62.9-3.1-2.30.4
Light reinforcement 20.10.20.6-0.1-0.8-0.2-0.2
Bone: marrow area1.74.26.9-2.62.01.7-1.8
Bone: maximum diameter1.42.86.0-2.22.50.30.1
Bone: maximum force0.91.94.3-1.60.50.6-2.1
Bone: maximum moment0.91.75.5-1.00.00.5-2.3
Mean time between licks in bursts0.42.33.21.0-1.4-1.81.7
Mean num. licks in bursts0.71.92.01.4-1.4-1.41.3
Cd content in liver0.20.20.6-0.00.20.00.8
Co content in liver0.91.12.50.11.60.31.3
Cu content in liver0.20.20.4-0.60.2-0.1-0.7
Fe content in liver1.31.62.9-0.80.71.7-1.5
K content in liver0.80.81.3-1.11.20.20.7
Mg content in liver0.30.30.5-0.70.70.4-0.1
Mn content in liver1.71.93.51.9-0.0-1.81.0
Na content in liver1.21.32.9-1.71.40.7-0.4
Rb content in liver0.30.40.7-0.7-0.10.60.8
Se content in liver0.10.10.3-0.40.20.1-0.5
Sr content in liver0.70.61.50.30.1-1.20.8
Zn content in liver0.10.20.7-0.0-0.1-0.80.1
Bone: minimum diameter0.91.73.0-1.41.2-0.2-1.7
Time in familiar zone, hab. session 10.70.82.60.1-0.61.6-0.5
Time in novel zone, hab. session 10.80.91.7-0.10.9-1.30.9
Total zone transitions, hab. session 10.60.91.7-1.10.81.30.2
Total locomotion distance, hab. session 11.31.92.6-1.41.61.3-1.1
Locomotion velocity, hab. session 11.01.41.8-1.31.40.9-1.2
Time in familiar zone, hab. session 20.30.41.00.60.20.2-1.0
Time in novel zone, hab. session 20.50.50.90.3-0.7-0.81.0
Total zone transitions, hab. session 20.30.40.90.5-1.00.20.5
Total locomotion distance, hab. session 20.30.41.40.5-1.20.2-0.2
Locomotion velocity, hab. session 20.30.41.20.5-1.1-0.0-0.1
Novel to familiar place preference ratio0.10.10.40.1-0.70.00.3
Novelty place preference0.10.10.40.2-0.6-0.00.1
Time in novel zone, NPP test0.10.20.50.2-0.70.1-0.1
Total zone transitions, NPP test0.10.20.4-0.30.40.70.1
Total locomotion distance, NPP test0.50.82.50.2-0.20.7-1.6
Locomotion velocity, NPP test0.40.62.10.4-0.20.2-1.4
Intraocular pressure2.13.46.62.6-1.8-1.9-0.2
Delta distance traveled before/after self-admin1.01.11.81.1-1.2-1.30.1
Delta ambulatory time before/after self-admin0.81.43.31.1-0.8-1.80.6
Parametrial fat weight0.92.12.91.3-1.0-1.71.7
Pavlov. Cond. lever latency1.31.72.31.3-1.5-1.40.9
Pavlov. Cond. magazine entry latency1.92.44.8-1.21.41.2-2.2
Pavlov. Cond. change in total contacts1.71.83.6-1.01.11.2-1.9
Pavlov. Cond. index score2.22.74.1-1.42.01.5-1.6
Pavlov. Cond. latency score2.43.14.2-1.62.01.7-1.6
Pavlov. Cond. lever contacts1.21.42.0-0.91.41.2-1.2
Pavlov. Cond. magazine entry number1.72.13.71.3-1.3-1.21.9
Pavlov. Cond. intertrial magazine entries0.20.20.5-0.40.10.50.7
Pavlov. Cond. lever-magazine prob. diff.1.92.33.6-1.21.91.3-1.6
Pavlov. Cond. response bias2.02.43.7-1.41.91.2-1.6
Pavlov. Cond. lever latency0.40.61.5-0.2-1.20.21.0
Pavlov. Cond. magazine entry latency0.20.30.90.40.9-0.40.2
Pavlov. Cond. change in total contacts0.92.17.2-1.12.70.2-0.3
Pavlov. Cond. index score0.61.03.8-0.12.0-0.3-0.3
Pavlov. Cond. latency score0.60.93.5-0.11.9-0.3-0.4
Pavlov. Cond. lever contacts0.71.12.6-0.11.60.2-1.3
Pavlov. Cond. magazine entry number0.40.62.00.0-1.40.5-0.1
Pavlov. Cond. intertrial magazine entries0.51.01.5-0.2-1.21.0-1.2
Pavlov. Cond. lever-magazine prob. diff.0.71.14.1-0.22.0-0.3-0.2
Pavlov. Cond. response bias0.50.72.2-0.11.50.2-0.8
Time in closed arm before self-admin0.61.01.6-1.21.30.80.3
Time in closed arm after self-admin1.01.12.0-1.21.11.40.2
Time in open arm before self-admin3.94.86.82.6-2.4-2.6-0.1
Time in open arm after self-admin0.70.81.9-1.01.40.2-0.6
Bone: periosteal estimation1.53.56.6-2.62.20.7-1.3
Bone: periosteal perimeter1.02.03.6-1.91.70.8-0.9
Bone: post-yield work0.71.23.30.5-1.1-0.1-1.8
Progressive ratio test 1 active lever presses0.71.31.81.4-0.3-1.2-1.3
Progressive ratio test 1 breakpoint0.61.01.71.2-0.2-1.0-1.3
Progressive ratio test 1 inactive lever presses2.46.411.63.4-2.4-2.90.0
Progressive ratio test 2 active lever presses0.71.01.51.0-0.0-1.2-1.2
Progressive ratio test 2 breakpoint0.70.91.41.0-0.1-1.2-1.2
Progressive ratio test 2 inactive lever presses0.41.22.61.3-0.0-1.6-0.6
Incentive Sensitization - Responses0.10.30.7-0.40.9-0.50.0
Incentive Sensitization - Breakpoint0.10.30.6-0.40.8-0.60.1
Sum of active levers in priming session hrs 5-60.60.61.5-1.20.90.2-0.1
Progressive ratio0.20.70.80.9-0.6-0.90.9
Food seeking constrained by brief footshock0.81.12.6-0.70.01.1-1.6
Seeking ratio, punishment vs. effort1.32.83.8-1.90.71.9-1.9
Retroperitoneal fat weight0.83.57.61.5-1.4-1.52.8
Reaction time number correct0.10.40.80.7-0.70.1-0.9
Reaction time mean minus median0.00.10.1-0.20.20.2-0.2
Reaction time mean minus median AUC0.00.20.50.10.50.4-0.7
Reaction time num false alarms1.42.44.01.7-2.0-1.50.6
Reaction time num false alarms AUC1.22.74.71.8-2.2-1.60.5
Reaction time trials correct on left0.10.40.80.7-0.70.1-0.9
Reaction time trials on left0.10.40.70.7-0.70.1-0.9
Reaction time mean0.92.03.2-1.51.80.41.6
Reaction time mean AUC0.61.52.5-1.21.60.21.4
Median of all reaction times2.13.25.1-1.92.30.32.1
Reaction time omissions0.10.10.3-0.2-0.10.40.5
Reaction time false alarm rate1.11.52.01.1-1.4-1.40.9
Reaction time premature initiation rate1.11.86.90.4-0.10.0-2.6
Reaction time premature initiations0.72.27.80.8-0.6-0.0-2.8
Std. dev. reaction times0.20.71.4-1.20.90.80.0
Reaction time trials completed0.10.40.70.7-0.70.1-0.9
Reaction time trials AUC0.10.30.50.6-0.60.1-0.7
Run reversals in cocaine runway, females0.20.20.70.10.3-0.40.8
Run reversals in cocaine runway, males0.20.20.90.00.90.20.1
Latency to leave start box in cocaine runway2.43.36.32.5-1.9-1.70.2
Latency to leave start box in cocaine runway, F1.41.72.61.6-1.0-1.51.0
Latency to leave start box in cocaine runway, M3.33.14.82.1-2.2-0.7-1.6
Std. dev. time between licks in bursts0.61.21.61.3-1.3-1.20.1
Total sessions with >9 infusions1.92.34.52.1-1.1-1.7-0.8
Short access day 1 total inactive lever presses0.10.20.50.4-0.5-0.70.2
Short access day 10 total inactive lever presses0.10.50.60.6-0.8-0.70.8
Short access day 1 total infusions0.40.92.11.5-0.6-0.9-0.4
Short access day 10 total infusions0.71.12.61.6-0.8-1.1-0.3
Short access total infusions1.01.43.31.8-0.8-1.3-0.0
Short access day 1 locomotion1.22.03.41.4-0.6-1.9-1.6
Short access day 10 total locomotion0.20.71.81.3-0.3-0.8-0.4
Short access total locomotion1.62.54.32.1-1.4-1.9-0.3
One hour access (0.3 mA shock)0.30.40.50.70.6-0.5-0.7
Compulsive drug intake0.10.10.20.40.2-0.40.0
One hour access (shock baseline)0.10.20.40.7-0.1-0.3-0.5
Social response proportion0.81.02.5-1.60.50.8-0.7
Social responses0.81.12.9-1.71.00.3-0.7
Social time0.20.30.8-0.90.60.2-0.4
Soleus weight0.61.74.00.2-2.00.1-1.6
Bone: stiffness1.62.87.1-2.71.31.3-0.9
Tibialis anterior weight0.00.10.30.2-0.5-0.5-0.1
Time to tail flick, vehicle, before self-admin0.10.10.30.20.3-0.60.2
Time to tail flick, vehicle, after self-admin0.10.10.30.2-0.6-0.40.1
Time to tail flick, test, before self-admin0.30.30.7-0.00.1-0.70.9
Time to tail flick, test, after self-admin0.50.51.01.0-0.60.6-0.5
Delta time to tail flick, vehicle, before/after SA0.40.41.20.7-1.10.1-0.0
Delta time to tail flick, test, before/after SA0.91.12.41.1-0.60.7-1.5
Tibia length2.36.513.5-3.72.71.9-1.3
Ambulatory time before self-admin0.41.22.5-1.60.21.4-0.5
Ambulatory time after self-admin0.20.30.4-0.4-0.7-0.6-0.6
Bone: tissue strength0.90.92.2-0.3-1.00.6-1.5
Total heroin consumption0.30.41.4-0.3-0.0-0.0-1.2
Bone: trabecular number1.63.16.2-1.8-0.12.5-1.7
Bone: trabecular spacing1.11.64.20.60.7-1.22.1
Bone: trabecular thickness0.81.12.6-0.7-0.41.1-1.6
Bone: trabecular tissue density0.71.22.9-0.11.7-1.10.8
Water consumed over 24 hours1.01.93.71.9-1.6-0.8-0.9
Number of responses in last shaping day0.60.81.70.7-0.2-1.0-1.3