Flacc1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver mRNA stability Flacc1 0.04 0.03 5.6e-03 0.03 0.01 0.02 0.03 1.8e-04 8.0e-03 9.0e-04 4.7e-04
2 Liver gene expression Flacc1 0.14 0.07 1.8e-06 0.06 0.05 0.06 0.06 7.7e-07 2.1e-06 1.0e-06 6.0e-07
3 Liver intron excision ratio chr9_67810932_67816288 0.06 0.03 8.1e-06 0.01 0.04 0.03 0.03 1.7e-02 3.3e-05 1.4e-04 6.0e-04
4 Adipose gene expression Flacc1 0.07 0.04 6.1e-05 0.01 0.03 0.03 0.01 2.7e-02 8.1e-04 4.6e-04 1.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.72.94.81.70.12.21.9
Area under the delay curve0.00.00.10.0-0.2-0.1-0.4
BMI with tail3.712.724.0-4.9-4.5-2.50.2
BMI without tail0.92.86.9-1.9-2.6-0.6-0.6
Body weight0.10.30.70.7-0.20.90.2
Weight adjusted by age0.71.11.81.00.41.31.2
Bone surface2.03.67.22.70.91.91.7
Bone volume1.93.35.62.40.72.01.8
Breakpoint value in progressive ratio session0.50.70.90.80.80.70.9
Number of licking bursts0.20.40.60.40.60.50.8
Context. condit. distance diff. score0.91.13.5-0.60.60.5-1.9
Locomotion velocity, session 11.61.84.9-1.1-0.5-0.9-2.2
Locomotion distance, session 10.40.60.9-0.9-1.00.4-0.5
Locomotion velocity, session 20.50.50.9-0.6-1.0-0.1-1.0
Locomotion distance, session 21.11.55.1-0.7-2.3-0.4-0.4
Locomotion velocity, session 30.80.92.6-0.6-0.70.4-1.6
Locomotion distance, session 30.30.30.60.60.40.6-0.8
Stereotopy head waving bouts, day 30.60.71.4-1.2-0.5-1.00.4
Stereotopy head waving duration, day 31.21.42.4-1.6-1.5-0.80.6
Locomotion velocity, session 71.01.12.2-1.5-0.9-0.9-0.9
Locomotion distance, session 70.40.51.4-0.3-0.3-0.6-1.2
Stereotopy head waving bouts, day 70.91.12.31.10.81.50.2
Stereotopy head waving duration, day 70.40.51.40.2-0.61.20.3
Locomotion velocity, session 80.50.61.9-0.2-0.10.8-1.4
Locomotion distance, session 80.50.72.4-0.4-0.30.5-1.5
Degree of sensitization distance0.30.40.6-0.8-0.6-0.7-0.0
Degree of sensitization stereotypy1.51.63.81.50.42.0-0.4
Conditioned locomotion0.40.51.51.20.30.1-0.6
Cocaine response after cond. corrected1.31.52.21.51.11.3-1.1
Cocaine response after cond. not corrected2.52.94.72.11.42.20.6
Cocaine response before conditioning2.93.411.40.70.51.23.4
Saline control response0.30.51.10.50.11.00.7
Bone: connectivity density1.62.65.21.0-1.01.72.3
Bone: cortical apparent density2.93.98.8-2.4-0.3-3.0-1.0
Bone: cortical area0.71.01.91.11.4-1.00.2
Bone: cortical porosity2.72.94.82.12.21.30.6
Bone: cortical porosity4.04.36.92.62.31.81.3
Bone: cortical thickness0.91.55.4-0.80.3-2.3-0.2
Bone: cortical thickness0.50.51.1-1.0-0.1-0.90.6
Bone: cortical tissue density3.04.18.7-2.5-0.4-3.0-1.0
Condit. Reinf. active minus inactive responses1.31.52.90.81.40.51.7
Condit. Reinf. active-inactive response ratio0.50.51.50.20.60.11.2
Condit. Reinf. active responses1.62.02.91.61.70.91.4
Condit. Reinf. inactive responses0.40.41.01.00.80.2-0.1
Incentive salience index mean2.22.74.81.41.90.92.2
Condit. Reinf. lever presses1.21.63.01.31.70.81.1
Condit. Reinf. active minus inactive responses2.73.54.82.22.02.01.1
Condit. Reinf. active-inactive response ratio2.12.54.51.32.11.61.1
Condit. Reinf. active responses2.33.14.82.22.11.61.0
Condit. Reinf. inactive responses0.20.30.70.90.5-0.00.2
Condit. Reinf. lever presses0.60.82.0-0.21.1-0.01.4
Condit. Reinf. lever reinforcers received2.33.24.62.12.11.61.1
Conditioned reinforcement - actives0.20.30.6-0.6-0.2-0.80.5
Conditioned reinforcement - inactives0.81.12.80.81.7-1.0-0.2
Conditioned locomotion0.70.91.3-1.0-1.1-1.1-0.3
Patch foraging indifference point 0 sec0.20.40.8-0.7-0.3-0.90.7
Patch foraging indifference point AUC0.50.71.20.81.10.11.0
Delay disc. indifference point, 0s delay1.61.83.8-1.6-1.9-0.80.0
Delay disc. indifference point, 16s delay0.60.71.40.80.61.20.5
Delay disc. indifference point, 2s delay0.80.92.1-1.1-1.4-0.4-0.3
Delay disc. indifference point, 24s delay0.30.31.10.3-0.1-0.01.1
Delay disc. indifference point, 4s delay0.60.60.9-0.8-0.6-0.7-1.0
Delay disc. indifference point, 8s delay0.50.51.61.30.50.4-0.4
Indifference point function ln k0.20.30.7-0.3-0.60.3-0.9
Indifference point function log k0.20.30.7-0.3-0.60.3-0.9
Patch foraging total patch changes 0 sec0.40.71.1-1.0-0.4-0.81.1
Patch foraging total patch changes 12 sec0.40.51.0-0.30.5-1.00.9
Patch foraging total patch changes 18 sec1.31.93.3-1.6-0.5-1.81.2
Patch foraging total patch changes 24 sec0.40.61.50.40.90.11.2
Patch foraging total patch changes 6 sec0.71.03.3-0.5-0.7-0.21.8
Patch foraging time to switch 0 sec0.20.30.8-0.7-0.9-0.20.1
Patch foraging water rate 0 sec0.10.30.60.80.70.2-0.2
Patch foraging water rate 12 sec0.30.51.50.1-0.61.20.5
Patch foraging water rate 18 sec0.40.60.90.50.70.80.9
Patch foraging water rate 24 sec0.30.51.30.3-0.71.20.1
Patch foraging water rate 6 sec0.10.10.4-0.2-0.60.1-0.3
Seeking ratio, delayed vs. immediate footshock0.91.12.91.0-0.51.70.6
Distance traveled before self-admin1.41.83.61.91.11.30.8
Distance traveled after self-admin0.10.20.30.6-0.2-0.10.5
Extensor digitorum longus weight1.55.911.0-2.4-3.3-2.60.3
Bone: elastic displacement0.30.40.6-0.7-0.20.60.8
Bone: elastic work0.20.30.90.20.10.41.0
Bone: endosteal estimation2.04.37.02.62.01.81.8
Bone: endosteal perimeter1.73.66.72.61.61.91.2
Epididymis fat weight0.10.50.70.7-0.8-0.2-0.8
Delta time in closed arm before/after self-admin0.30.20.40.50.60.40.4
Delta time in open arm before/after self-admin4.24.27.32.72.61.60.3
Diff in mean of infusions in LGA sessions1.72.03.80.60.41.92.0
Delay discount exponential model param0.00.00.0-0.10.10.00.2
Extinction: sum of active levers before priming0.40.51.20.50.20.71.1
Active lever presses in extinction session 60.50.50.90.60.90.2-0.9
Bone: final force0.91.52.71.61.10.01.4
Bone: final moment0.71.22.91.10.8-0.11.7
Food consumed during 24 hour testing period0.71.02.1-1.4-1.0-1.00.0
Glucose0.91.42.5-1.4-1.6-1.00.3
Heart weight1.42.23.51.50.21.71.9
Delay discount hyperbolic model param0.10.10.2-0.10.20.20.4
Intermittent access intake day 1-15 change0.40.71.6-0.9-0.70.11.3
Intermittent access intake escalation0.51.12.5-1.1-0.9-0.11.6
Intermittent access intake escalation 20.60.61.50.20.21.01.2
Intermitt. access day 1 inactive lever presses0.93.56.4-2.5-1.5-2.30.3
Intermitt. access day 15 inactive lever presses0.40.82.3-0.7-0.5-0.51.5
Intermitt. access escalation Index1.21.73.6-1.0-0.9-1.9-1.2
Intermittent access day 1 total infusions0.20.30.4-0.60.5-0.7-0.4
Intermittent access day 15 total infusions1.21.83.5-1.9-0.8-1.41.0
Intermittent access terminal intake (last 3 days)1.21.63.4-1.9-0.7-1.11.1
Intermittent access total infusions0.81.02.1-1.4-0.4-1.20.6
Intermittent access day 1 locomotion0.40.61.4-0.90.3-1.20.1
Intermittent access day 15 total locomotion0.20.51.2-0.5-0.1-0.61.1
Intermittent access total locomotion0.50.61.3-1.1-0.4-0.90.1
Intermittent access standard deviation0.20.31.2-1.10.20.00.2
Left kidney weight0.52.54.8-0.7-2.1-0.22.2
Right kidney weight0.52.26.4-0.2-2.50.31.5
Cocaine induced anxiety0.20.30.70.1-0.9-0.7-0.2
Post-drug Anxiety0.40.40.90.1-1.00.3-0.8
Baseline Anxiety0.81.02.40.20.31.6-1.1
Tail length3.212.528.65.33.52.9-0.7
Length with tail3.615.531.15.64.23.60.1
Length without tail1.65.18.12.82.22.31.5
Times rat made contact with spout1.01.11.7-1.3-1.0-0.8-1.1
Lifetime Intake1.01.22.7-1.6-0.7-1.20.5
Liver weight, left0.61.02.01.40.80.7-0.9
Liver weight, right1.83.16.81.30.31.92.6
Locomotor activity0.50.81.4-0.7-1.1-1.20.3
Locomotor testing distance1.01.72.6-1.3-1.6-1.01.3
Locomotor testing rearing0.00.00.1-0.0-0.2-0.2-0.3
Locomotion in novel chamber3.13.99.3-2.0-1.50.43.1
Locomotion in novel chamber post-restriction0.60.92.60.60.60.71.6
Fecal boli incidents, locomotor time 10.50.70.80.70.90.90.9
Change in fecal boli incidents, locomotor task0.40.40.7-0.7-0.7-0.8-0.0
Time >=10cm from walls, locomotor time 10.20.20.40.40.6-0.6-0.0
Bouts of movement, locomotor time 10.80.93.60.11.9-0.30.0
Total resting periods, locomotor time 10.91.02.4-0.71.6-1.0-0.5
Rest time, locomotor task time 12.73.36.6-1.50.4-2.6-2.1
Distance moved, locomotor task time 11.82.76.22.50.51.90.9
Vertical activity count, locomotor time 10.30.81.81.40.31.10.0
Time >=10cm from walls, locomotor time 20.40.52.0-0.2-1.4-0.4-0.1
Bouts of movement, locomotor time 20.10.20.2-0.2-0.40.40.5
Total resting periods, locomotor time 20.10.10.2-0.3-0.10.20.5
Rest time, locomotor task time 21.62.04.1-1.10.9-2.0-1.4
Distance moved, locomotor task time 20.70.81.11.0-0.70.81.0
Vertical activity count, locomotor time 21.62.26.4-1.3-2.5-0.70.5
Light reinforcement 12.45.99.6-2.9-3.1-2.3-0.4
Light reinforcement 20.10.20.60.1-0.8-0.20.2
Bone: marrow area1.94.26.92.62.01.71.8
Bone: maximum diameter1.52.86.02.22.50.3-0.1
Bone: maximum force1.11.94.31.60.50.62.1
Bone: maximum moment0.91.75.51.00.00.52.3
Mean time between licks in bursts0.92.33.2-1.0-1.4-1.8-1.7
Mean num. licks in bursts1.21.92.0-1.4-1.4-1.4-1.3
Cd content in liver0.20.20.60.00.20.0-0.8
Co content in liver0.91.12.5-0.11.60.3-1.3
Cu content in liver0.20.20.40.60.2-0.10.7
Fe content in liver1.31.62.90.80.71.71.5
K content in liver0.80.81.31.11.20.2-0.7
Mg content in liver0.30.30.50.70.70.40.1
Mn content in liver1.71.93.5-1.9-0.0-1.8-1.0
Na content in liver1.31.32.91.71.40.70.4
Rb content in liver0.30.40.70.7-0.10.6-0.8
Se content in liver0.10.10.30.40.20.10.5
Sr content in liver0.70.61.5-0.30.1-1.2-0.8
Zn content in liver0.20.20.70.0-0.0-0.8-0.1
Bone: minimum diameter0.91.73.01.41.3-0.21.7
Time in familiar zone, hab. session 10.90.82.6-0.1-0.61.60.5
Time in novel zone, hab. session 10.90.91.70.11.0-1.3-0.9
Total zone transitions, hab. session 10.60.91.71.10.81.3-0.2
Total locomotion distance, hab. session 11.31.92.61.41.61.31.1
Locomotion velocity, hab. session 11.01.41.81.31.40.91.2
Time in familiar zone, hab. session 20.30.41.0-0.60.20.21.0
Time in novel zone, hab. session 20.50.50.9-0.3-0.7-0.8-1.0
Total zone transitions, hab. session 20.30.40.9-0.5-1.00.2-0.5
Total locomotion distance, hab. session 20.30.41.4-0.5-1.20.20.2
Locomotion velocity, hab. session 20.30.41.2-0.5-1.1-0.00.1
Novel to familiar place preference ratio0.10.10.4-0.1-0.70.0-0.3
Novelty place preference0.10.10.4-0.2-0.6-0.0-0.1
Time in novel zone, NPP test0.10.20.5-0.2-0.70.10.1
Total zone transitions, NPP test0.10.20.40.30.40.7-0.1
Total locomotion distance, NPP test0.60.82.5-0.2-0.20.71.6
Locomotion velocity, NPP test0.40.62.1-0.4-0.20.21.4
Intraocular pressure2.33.46.6-2.6-1.8-1.90.2
Delta distance traveled before/after self-admin1.01.11.8-1.1-1.2-1.3-0.1
Delta ambulatory time before/after self-admin1.11.43.3-1.1-0.8-1.8-0.6
Parametrial fat weight0.92.12.9-1.3-1.0-1.7-1.7
Pavlov. Cond. lever latency1.31.72.3-1.3-1.5-1.4-0.9
Pavlov. Cond. magazine entry latency1.92.44.81.21.41.22.2
Pavlov. Cond. change in total contacts1.71.83.61.01.11.21.9
Pavlov. Cond. index score2.22.74.11.42.01.51.6
Pavlov. Cond. latency score2.43.14.21.62.01.71.6
Pavlov. Cond. lever contacts1.21.42.00.91.41.21.2
Pavlov. Cond. magazine entry number1.72.13.7-1.3-1.3-1.2-1.9
Pavlov. Cond. intertrial magazine entries0.20.20.50.40.10.5-0.7
Pavlov. Cond. lever-magazine prob. diff.1.92.33.61.21.91.31.6
Pavlov. Cond. response bias2.02.43.71.41.91.21.6
Pavlov. Cond. lever latency0.50.61.50.2-1.20.2-1.0
Pavlov. Cond. magazine entry latency0.30.30.9-0.40.9-0.4-0.2
Pavlov. Cond. change in total contacts1.32.17.21.12.70.20.3
Pavlov. Cond. index score0.71.03.80.12.0-0.30.3
Pavlov. Cond. latency score0.70.93.50.11.9-0.30.4
Pavlov. Cond. lever contacts0.81.12.60.11.60.21.3
Pavlov. Cond. magazine entry number0.50.62.0-0.0-1.40.50.1
Pavlov. Cond. intertrial magazine entries0.71.01.50.2-1.21.01.2
Pavlov. Cond. lever-magazine prob. diff.0.81.14.10.22.0-0.30.2
Pavlov. Cond. response bias0.50.72.20.11.50.20.8
Time in closed arm before self-admin0.81.01.61.21.30.8-0.3
Time in closed arm after self-admin1.11.12.01.21.11.4-0.2
Time in open arm before self-admin4.44.86.8-2.6-2.4-2.60.1
Time in open arm after self-admin0.70.81.91.01.40.20.6
Bone: periosteal estimation1.63.56.62.62.30.71.3
Bone: periosteal perimeter1.12.03.61.91.70.80.9
Bone: post-yield work0.81.23.3-0.5-1.1-0.11.8
Progressive ratio test 1 active lever presses1.01.31.8-1.4-0.3-1.21.3
Progressive ratio test 1 breakpoint0.91.01.7-1.2-0.2-1.01.3
Progressive ratio test 1 inactive lever presses4.46.411.6-3.4-2.4-2.9-0.0
Progressive ratio test 2 active lever presses0.81.01.5-1.0-0.0-1.21.2
Progressive ratio test 2 breakpoint0.80.91.4-1.0-0.1-1.21.2
Progressive ratio test 2 inactive lever presses0.71.22.6-1.3-0.0-1.60.6
Incentive Sensitization - Responses0.20.30.70.40.9-0.5-0.0
Incentive Sensitization - Breakpoint0.20.30.60.40.8-0.6-0.1
Sum of active levers in priming session hrs 5-60.60.61.51.20.90.20.1
Progressive ratio0.40.70.8-0.9-0.6-0.9-0.9
Food seeking constrained by brief footshock0.91.12.60.70.01.11.6
Seeking ratio, punishment vs. effort2.02.83.81.90.71.91.9
Retroperitoneal fat weight0.83.57.6-1.5-1.4-1.5-2.8
Reaction time number correct0.20.40.8-0.7-0.70.10.9
Reaction time mean minus median0.00.10.10.20.20.20.2
Reaction time mean minus median AUC0.10.20.5-0.10.50.40.7
Reaction time num false alarms1.72.44.0-1.7-2.0-1.5-0.6
Reaction time num false alarms AUC1.72.74.7-1.8-2.2-1.6-0.5
Reaction time trials correct on left0.20.40.8-0.7-0.70.10.9
Reaction time trials on left0.20.40.7-0.7-0.70.10.9
Reaction time mean1.32.03.21.51.80.4-1.6
Reaction time mean AUC0.91.52.51.21.60.2-1.4
Median of all reaction times2.33.25.11.92.30.3-2.1
Reaction time omissions0.10.10.30.2-0.10.4-0.5
Reaction time false alarm rate1.11.52.0-1.1-1.4-1.4-0.9
Reaction time premature initiation rate1.31.86.9-0.4-0.10.02.6
Reaction time premature initiations1.22.27.8-0.8-0.6-0.02.8
Std. dev. reaction times0.40.71.41.20.90.8-0.0
Reaction time trials completed0.20.40.7-0.7-0.70.10.9
Reaction time trials AUC0.20.30.5-0.6-0.60.10.7
Run reversals in cocaine runway, females0.20.20.7-0.10.3-0.4-0.8
Run reversals in cocaine runway, males0.20.20.9-0.00.90.2-0.1
Latency to leave start box in cocaine runway2.93.36.3-2.5-1.9-1.7-0.2
Latency to leave start box in cocaine runway, F1.51.72.6-1.6-1.0-1.5-1.0
Latency to leave start box in cocaine runway, M3.33.14.8-2.1-2.2-0.71.6
Std. dev. time between licks in bursts0.91.21.6-1.3-1.3-1.2-0.1
Total sessions with >9 infusions1.92.34.5-2.1-1.1-1.70.8
Short access day 1 total inactive lever presses0.20.20.5-0.4-0.5-0.7-0.2
Short access day 10 total inactive lever presses0.20.50.6-0.6-0.8-0.7-0.8
Short access day 1 total infusions0.70.92.1-1.5-0.6-0.90.4
Short access day 10 total infusions0.91.12.6-1.6-0.8-1.10.3
Short access total infusions1.11.43.3-1.8-0.8-1.30.0
Short access day 1 locomotion1.72.03.4-1.4-0.6-1.91.6
Short access day 10 total locomotion0.40.71.8-1.3-0.3-0.80.4
Short access total locomotion2.12.54.3-2.1-1.4-1.90.3
One hour access (0.3 mA shock)0.40.40.5-0.70.6-0.50.7
Compulsive drug intake0.10.10.2-0.40.2-0.4-0.0
One hour access (shock baseline)0.10.20.4-0.7-0.1-0.30.5
Social response proportion0.81.02.51.60.50.80.7
Social responses0.81.12.91.71.00.30.7
Social time0.30.30.80.90.60.20.4
Soleus weight0.61.64.0-0.2-2.00.11.6
Bone: stiffness1.72.87.12.71.31.30.9
Tibialis anterior weight0.00.10.3-0.2-0.5-0.50.1
Time to tail flick, vehicle, before self-admin0.10.10.3-0.20.3-0.6-0.2
Time to tail flick, vehicle, after self-admin0.10.10.3-0.2-0.6-0.4-0.1
Time to tail flick, test, before self-admin0.30.30.70.00.1-0.7-0.9
Time to tail flick, test, after self-admin0.50.51.0-1.0-0.60.60.5
Delta time to tail flick, vehicle, before/after SA0.40.41.2-0.7-1.10.10.0
Delta time to tail flick, test, before/after SA1.01.12.4-1.1-0.60.71.5
Tibia length2.46.513.53.72.71.91.3
Ambulatory time before self-admin0.81.22.51.60.21.40.5
Ambulatory time after self-admin0.30.30.40.4-0.7-0.60.6
Bone: tissue strength0.90.92.20.3-1.00.61.5
Total heroin consumption0.30.41.40.3-0.0-0.01.2
Bone: trabecular number1.93.16.21.8-0.12.51.7
Bone: trabecular spacing1.21.64.2-0.60.7-1.2-2.1
Bone: trabecular thickness0.91.12.60.7-0.41.11.6
Bone: trabecular tissue density0.81.22.90.11.7-1.1-0.8
Water consumed over 24 hours1.51.93.7-1.9-1.6-0.80.9
Number of responses in last shaping day0.70.81.7-0.7-0.2-1.01.3