Fbln1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Fbln1 0.09 0.07 3.5e-05 0.04 0.03 0.04 0.01 1.5e-04 7.5e-04 2.1e-04 1.4e-02
2 NAcc gene expression Fbln1 0.12 0.07 5.6e-09 0.09 0.07 0.08 0.09 3.5e-10 1.3e-08 1.0e-09 7.9e-11
3 BLA gene expression Fbln1 0.36 0.14 1.4e-06 0.08 0.12 0.11 0.07 4.9e-05 4.8e-07 1.6e-06 8.4e-05
4 PL gene expression Fbln1 0.19 0.1 3.3e-07 0.06 0.06 0.05 0.05 1.7e-07 2.6e-07 6.2e-06 4.0e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.81.42.11.4-1.1-1.2-0.8
Area under the delay curve1.92.03.51.6-1.4-1.90.2
BMI with tail2.47.811.9-2.93.41.82.8
BMI without tail1.43.04.5-2.12.11.60.8
Body weight1.04.26.8-2.42.61.91.1
Weight adjusted by age1.21.31.8-1.21.31.30.4
Bone surface0.30.61.30.9-0.5-1.1-0.2
Bone volume0.40.60.70.9-0.8-0.8-0.6
Breakpoint value in progressive ratio session0.20.20.5-0.30.20.30.7
Number of licking bursts0.80.92.40.8-0.7-0.1-1.5
Context. condit. distance diff. score1.62.03.7-1.91.31.21.1
Locomotion velocity, session 10.30.30.8-0.90.7-0.10.3
Locomotion distance, session 10.30.30.60.2-0.8-0.4-0.8
Locomotion velocity, session 21.82.13.6-1.91.71.30.4
Locomotion distance, session 20.10.10.20.1-0.1-0.40.4
Locomotion velocity, session 31.82.13.9-2.01.11.8-0.3
Locomotion distance, session 30.60.71.9-0.3-0.40.7-1.4
Stereotopy head waving bouts, day 31.82.12.9-1.71.60.91.4
Stereotopy head waving duration, day 33.03.64.9-2.22.21.91.1
Locomotion velocity, session 72.52.85.3-1.91.52.3-0.2
Locomotion distance, session 70.10.10.1-0.40.20.4-0.3
Stereotopy head waving bouts, day 72.42.74.4-2.01.52.1-0.1
Stereotopy head waving duration, day 71.01.22.2-1.31.01.5-0.2
Locomotion velocity, session 85.26.210.0-3.22.72.31.5
Locomotion distance, session 80.71.02.4-1.50.80.80.6
Degree of sensitization distance1.41.43.7-0.81.1-0.21.9
Degree of sensitization stereotypy1.01.12.1-1.20.91.5-0.4
Conditioned locomotion0.20.20.6-0.20.10.8-0.3
Cocaine response after cond. corrected0.50.61.40.8-0.4-0.4-1.2
Cocaine response after cond. not corrected1.11.23.80.9-0.6-0.1-1.9
Cocaine response before conditioning0.20.30.80.2-0.50.2-0.9
Saline control response0.60.71.90.6-0.80.1-1.4
Bone: connectivity density0.50.81.21.1-0.7-1.1-0.5
Bone: cortical apparent density0.81.11.81.0-0.9-1.30.7
Bone: cortical area0.71.12.0-0.91.21.40.1
Bone: cortical porosity0.40.40.8-0.60.70.90.2
Bone: cortical porosity0.40.50.9-0.70.70.90.2
Bone: cortical thickness0.10.10.20.4-0.1-0.20.5
Bone: cortical thickness1.11.21.8-0.81.41.21.1
Bone: cortical tissue density0.70.91.60.9-0.8-1.30.9
Condit. Reinf. active minus inactive responses0.60.61.00.9-0.8-1.0-0.1
Condit. Reinf. active-inactive response ratio1.01.01.81.1-1.1-1.3-0.0
Condit. Reinf. active responses1.41.72.51.4-1.4-1.6-0.5
Condit. Reinf. inactive responses0.60.71.10.8-0.9-1.1-0.5
Incentive salience index mean0.30.40.50.7-0.7-0.6-0.6
Condit. Reinf. lever presses0.20.31.10.1-0.20.2-1.0
Condit. Reinf. active minus inactive responses0.30.30.4-0.70.60.50.5
Condit. Reinf. active-inactive response ratio0.00.00.10.00.30.1-0.2
Condit. Reinf. active responses1.41.92.6-1.61.41.11.4
Condit. Reinf. inactive responses2.73.34.5-2.11.81.51.8
Condit. Reinf. lever presses0.81.11.6-1.31.10.80.9
Condit. Reinf. lever reinforcers received0.91.31.7-1.31.10.91.2
Conditioned reinforcement - actives1.21.22.71.2-0.9-1.6-0.2
Conditioned reinforcement - inactives0.00.00.0-0.2-0.10.0-0.0
Conditioned locomotion0.40.40.7-0.50.80.8-0.4
Patch foraging indifference point 0 sec0.30.51.01.0-0.4-0.5-0.8
Patch foraging indifference point AUC0.20.20.30.1-0.6-0.50.5
Delay disc. indifference point, 0s delay0.20.20.50.20.2-0.40.7
Delay disc. indifference point, 16s delay2.92.94.42.0-1.7-2.1-0.5
Delay disc. indifference point, 2s delay0.30.40.50.7-0.4-0.70.5
Delay disc. indifference point, 24s delay0.10.10.2-0.00.2-0.00.5
Delay disc. indifference point, 4s delay2.02.14.51.3-1.2-2.10.8
Delay disc. indifference point, 8s delay1.41.42.41.2-1.3-1.50.3
Indifference point function ln k0.81.12.2-1.01.51.0-0.3
Indifference point function log k0.81.12.2-1.01.51.0-0.3
Patch foraging total patch changes 0 sec0.50.81.61.2-0.6-0.5-1.0
Patch foraging total patch changes 12 sec0.20.20.5-0.50.30.20.7
Patch foraging total patch changes 18 sec0.81.01.41.2-1.1-0.6-0.9
Patch foraging total patch changes 24 sec0.20.20.70.2-0.20.4-0.8
Patch foraging total patch changes 6 sec0.40.61.21.1-0.7-0.8-0.3
Patch foraging time to switch 0 sec0.50.71.9-1.00.21.40.2
Patch foraging water rate 0 sec0.10.10.40.10.60.3-0.2
Patch foraging water rate 12 sec0.61.02.71.0-0.2-0.4-1.6
Patch foraging water rate 18 sec0.20.30.50.7-0.1-0.7-0.5
Patch foraging water rate 24 sec0.10.10.30.00.5-0.40.3
Patch foraging water rate 6 sec0.40.61.00.8-0.7-0.5-1.0
Seeking ratio, delayed vs. immediate footshock0.70.81.51.2-0.9-0.5-0.9
Distance traveled before self-admin0.10.10.3-0.50.30.5-0.0
Distance traveled after self-admin0.91.02.8-0.80.61.7-0.4
Extensor digitorum longus weight0.21.01.8-1.11.30.90.1
Bone: elastic displacement0.10.10.6-0.1-0.00.1-0.7
Bone: elastic work2.53.24.9-2.01.92.20.3
Bone: endosteal estimation1.94.26.3-2.52.32.30.3
Bone: endosteal perimeter2.65.310.1-2.32.33.2-0.8
Epididymis fat weight0.20.30.9-0.20.1-1.00.6
Delta time in closed arm before/after self-admin0.10.10.3-0.00.40.30.5
Delta time in open arm before/after self-admin0.40.41.1-0.4-0.50.2-1.0
Diff in mean of infusions in LGA sessions0.70.82.60.10.2-0.71.6
Delay discount exponential model param2.02.13.8-1.61.41.9-0.3
Extinction: sum of active levers before priming0.90.81.90.5-0.3-1.41.1
Active lever presses in extinction session 61.71.73.8-0.91.40.42.0
Bone: final force0.91.53.6-0.81.20.31.9
Bone: final moment1.22.04.8-0.91.50.32.2
Food consumed during 24 hour testing period2.93.54.9-2.22.11.71.3
Glucose0.30.41.01.0-0.7-0.1-0.3
Heart weight0.10.10.10.20.3-0.20.4
Delay discount hyperbolic model param1.61.73.1-1.41.31.8-0.4
Intermittent access intake day 1-15 change0.40.40.60.6-0.8-0.5-0.7
Intermittent access intake escalation0.30.30.70.5-0.5-0.3-0.8
Intermittent access intake escalation 20.50.50.80.7-0.9-0.6-0.5
Intermitt. access day 1 inactive lever presses1.21.31.6-1.21.01.31.0
Intermitt. access day 15 inactive lever presses1.31.42.7-1.21.20.31.7
Intermitt. access escalation Index0.20.20.50.40.3-0.70.1
Intermittent access day 1 total infusions0.20.20.5-0.50.70.00.5
Intermittent access day 15 total infusions0.00.00.0-0.00.2-0.2-0.2
Intermittent access terminal intake (last 3 days)0.20.20.5-0.60.70.30.2
Intermittent access total infusions0.30.30.6-0.60.80.50.2
Intermittent access day 1 locomotion0.00.10.2-0.00.20.1-0.4
Intermittent access day 15 total locomotion0.30.30.4-0.60.60.7-0.6
Intermittent access total locomotion0.50.50.9-1.00.80.70.3
Intermittent access standard deviation0.40.40.7-0.80.30.40.9
Left kidney weight10.429.243.0-6.66.24.34.1
Right kidney weight10.429.342.0-6.56.24.34.4
Cocaine induced anxiety3.43.96.6-2.02.01.02.6
Post-drug Anxiety2.42.64.4-1.51.71.02.1
Baseline Anxiety2.22.33.41.9-1.4-1.0-1.7
Tail length0.20.71.50.5-0.9-0.5-1.2
Length with tail0.00.20.5-0.3-0.10.3-0.7
Length without tail0.20.31.0-0.40.4-0.31.0
Times rat made contact with spout0.60.71.5-0.80.9-0.31.2
Lifetime Intake0.50.60.9-0.91.00.80.2
Liver weight, left0.71.23.3-0.70.9-0.21.8
Liver weight, right0.10.20.6-0.80.20.20.1
Locomotor activity1.52.44.4-1.52.11.70.3
Locomotor testing distance0.10.20.6-0.00.80.5-0.3
Locomotor testing rearing0.50.71.4-0.70.91.2-0.4
Locomotion in novel chamber1.41.85.01.1-0.9-0.2-2.2
Locomotion in novel chamber post-restriction0.20.20.7-0.30.30.8-0.2
Fecal boli incidents, locomotor time 10.30.40.6-0.80.50.60.5
Change in fecal boli incidents, locomotor task0.60.61.20.7-0.8-0.3-1.1
Time >=10cm from walls, locomotor time 11.21.21.5-1.21.21.00.9
Bouts of movement, locomotor time 10.70.82.0-0.60.90.21.4
Total resting periods, locomotor time 10.80.92.6-0.40.8-0.21.6
Rest time, locomotor task time 11.01.11.7-1.01.30.51.2
Distance moved, locomotor task time 10.30.30.9-0.40.31.0-0.1
Vertical activity count, locomotor time 10.10.10.30.2-0.20.4-0.5
Time >=10cm from walls, locomotor time 20.10.10.20.10.30.4-0.4
Bouts of movement, locomotor time 20.80.93.30.0-0.0-0.61.8
Total resting periods, locomotor time 21.11.24.00.1-0.1-0.92.0
Rest time, locomotor task time 22.02.35.71.3-1.3-2.40.1
Distance moved, locomotor task time 22.93.37.5-1.81.62.7-0.3
Vertical activity count, locomotor time 22.72.96.6-1.61.52.6-0.5
Light reinforcement 10.51.02.0-0.70.51.4-1.1
Light reinforcement 21.41.93.5-1.31.51.9-0.1
Bone: marrow area1.94.16.2-2.52.32.20.4
Bone: maximum diameter3.97.19.9-2.93.13.10.6
Bone: maximum force1.42.43.6-1.41.71.11.9
Bone: maximum moment1.73.04.8-1.52.01.02.2
Mean time between licks in bursts1.41.93.51.5-1.2-0.5-1.9
Mean num. licks in bursts2.22.76.9-1.41.3-0.22.6
Cd content in liver0.60.61.11.0-0.7-1.10.1
Co content in liver0.30.40.7-0.50.60.8-0.4
Cu content in liver4.35.27.22.7-2.6-1.6-2.2
Fe content in liver0.10.10.30.20.00.5-0.2
K content in liver0.20.20.6-0.1-0.1-0.50.8
Mg content in liver0.20.20.40.3-0.1-0.70.5
Mn content in liver0.40.41.0-1.00.60.50.2
Na content in liver1.11.12.01.2-1.4-0.8-0.7
Rb content in liver0.40.51.11.1-0.3-0.90.0
Se content in liver0.50.60.70.7-0.8-0.8-0.7
Sr content in liver0.40.30.70.4-0.8-0.5-0.5
Zn content in liver1.11.21.91.0-1.2-0.5-1.4
Bone: minimum diameter1.42.75.8-1.41.12.4-1.3
Time in familiar zone, hab. session 10.80.81.2-0.91.11.1-0.1
Time in novel zone, hab. session 10.20.20.30.6-0.4-0.2-0.3
Total zone transitions, hab. session 11.11.52.61.3-1.6-1.3-0.6
Total locomotion distance, hab. session 10.00.10.1-0.1-0.4-0.0-0.4
Locomotion velocity, hab. session 10.00.10.1-0.3-0.30.0-0.3
Time in familiar zone, hab. session 20.60.60.80.8-0.4-0.9-0.8
Time in novel zone, hab. session 20.10.10.20.1-0.3-0.10.4
Total zone transitions, hab. session 20.20.20.3-0.50.50.10.6
Total locomotion distance, hab. session 20.10.10.2-0.40.30.4-0.1
Locomotion velocity, hab. session 20.10.10.2-0.40.30.30.0
Novel to familiar place preference ratio0.10.10.30.1-0.4-0.60.1
Novelty place preference0.00.00.0-0.2-0.2-0.2-0.0
Time in novel zone, NPP test0.00.00.0-0.2-0.2-0.2-0.1
Total zone transitions, NPP test0.70.91.60.8-1.2-1.3-0.1
Total locomotion distance, NPP test0.10.10.30.1-0.50.1-0.5
Locomotion velocity, NPP test0.10.20.30.2-0.6-0.0-0.6
Intraocular pressure0.10.10.2-0.40.10.3-0.5
Delta distance traveled before/after self-admin0.40.41.0-0.50.41.0-0.5
Delta ambulatory time before/after self-admin0.20.20.3-0.10.30.5-0.5
Parametrial fat weight0.20.30.60.4-0.7-0.80.0
Pavlov. Cond. lever latency0.40.51.7-0.40.5-0.31.3
Pavlov. Cond. magazine entry latency0.81.01.71.3-1.0-0.8-0.8
Pavlov. Cond. change in total contacts0.40.41.01.0-0.4-0.2-0.8
Pavlov. Cond. index score0.40.50.80.8-0.7-0.2-0.9
Pavlov. Cond. latency score0.30.41.10.6-0.50.1-1.0
Pavlov. Cond. lever contacts0.60.72.40.4-0.40.4-1.5
Pavlov. Cond. magazine entry number0.70.91.5-1.20.90.80.7
Pavlov. Cond. intertrial magazine entries1.72.13.81.7-1.3-2.0-0.3
Pavlov. Cond. lever-magazine prob. diff.0.60.81.31.0-0.9-0.3-1.1
Pavlov. Cond. response bias0.81.01.51.2-0.8-0.5-1.2
Pavlov. Cond. lever latency0.20.30.50.7-0.6-0.5-0.4
Pavlov. Cond. magazine entry latency0.40.40.70.8-0.6-0.70.4
Pavlov. Cond. change in total contacts0.60.81.2-0.90.90.71.1
Pavlov. Cond. index score0.10.10.4-0.10.20.00.6
Pavlov. Cond. latency score0.10.20.4-0.20.40.30.6
Pavlov. Cond. lever contacts0.50.60.7-0.80.90.60.9
Pavlov. Cond. magazine entry number0.10.10.40.1-0.1-0.2-0.6
Pavlov. Cond. intertrial magazine entries0.81.12.7-0.90.90.21.6
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.10.20.20.5
Pavlov. Cond. response bias0.20.30.6-0.40.50.20.8
Time in closed arm before self-admin1.21.32.01.4-1.3-1.1-0.7
Time in closed arm after self-admin0.30.30.50.5-0.20.4-0.7
Time in open arm before self-admin0.30.30.6-0.60.40.8-0.1
Time in open arm after self-admin0.40.41.2-1.10.30.60.2
Bone: periosteal estimation1.93.95.5-2.22.32.30.3
Bone: periosteal perimeter2.74.58.3-2.12.22.9-0.8
Bone: post-yield work0.81.12.80.30.2-1.21.7
Progressive ratio test 1 active lever presses0.30.30.80.30.3-0.90.4
Progressive ratio test 1 breakpoint0.20.20.60.30.2-0.80.3
Progressive ratio test 1 inactive lever presses0.20.20.4-0.50.70.20.4
Progressive ratio test 2 active lever presses0.80.92.7-0.20.2-0.91.6
Progressive ratio test 2 breakpoint0.91.02.9-0.30.3-0.81.7
Progressive ratio test 2 inactive lever presses0.50.61.7-0.70.5-0.21.3
Incentive Sensitization - Responses1.41.44.6-0.70.6-0.62.1
Incentive Sensitization - Breakpoint1.61.75.1-0.80.8-0.52.3
Sum of active levers in priming session hrs 5-60.50.51.0-0.70.50.51.0
Progressive ratio0.20.30.60.5-0.4-0.80.3
Food seeking constrained by brief footshock0.50.71.1-0.70.91.00.3
Seeking ratio, punishment vs. effort0.70.91.7-0.91.01.30.3
Retroperitoneal fat weight1.23.86.0-2.42.21.51.4
Reaction time number correct0.30.40.70.7-0.6-0.0-0.8
Reaction time mean minus median0.10.20.30.4-0.6-0.4-0.2
Reaction time mean minus median AUC0.10.10.2-0.50.10.20.4
Reaction time num false alarms0.60.82.40.4-0.70.3-1.5
Reaction time num false alarms AUC0.50.72.00.3-0.80.0-1.4
Reaction time trials correct on left0.30.40.70.7-0.6-0.0-0.8
Reaction time trials on left0.30.40.70.8-0.7-0.1-0.8
Reaction time mean0.60.91.40.9-1.2-1.10.3
Reaction time mean AUC0.71.01.60.8-1.3-1.20.3
Median of all reaction times0.91.32.01.1-1.3-1.40.4
Reaction time omissions1.01.42.21.5-1.1-1.4-0.1
Reaction time false alarm rate0.10.20.7-0.1-0.30.2-0.8
Reaction time premature initiation rate1.52.04.7-1.21.20.42.2
Reaction time premature initiations0.60.92.3-0.70.70.31.5
Std. dev. reaction times0.40.51.00.6-0.9-1.00.1
Reaction time trials completed0.30.40.70.8-0.7-0.1-0.8
Reaction time trials AUC0.20.20.50.5-0.40.2-0.7
Run reversals in cocaine runway, females2.01.93.61.5-1.1-0.7-1.9
Run reversals in cocaine runway, males0.20.20.4-0.60.40.4-0.5
Latency to leave start box in cocaine runway1.11.22.0-1.21.41.20.2
Latency to leave start box in cocaine runway, F0.40.41.0-0.51.00.50.2
Latency to leave start box in cocaine runway, M1.21.21.8-1.31.11.20.6
Std. dev. time between licks in bursts0.00.00.10.4-0.0-0.20.0
Total sessions with >9 infusions0.91.02.0-0.80.81.4-0.9
Short access day 1 total inactive lever presses1.11.21.9-1.31.41.20.3
Short access day 10 total inactive lever presses1.11.21.9-1.40.81.40.5
Short access day 1 total infusions0.80.81.2-1.01.01.1-0.1
Short access day 10 total infusions0.30.30.8-0.50.90.6-0.0
Short access total infusions1.71.92.6-1.51.61.60.3
Short access day 1 locomotion0.10.10.4-0.10.00.7-0.3
Short access day 10 total locomotion0.20.20.70.1-0.00.3-0.8
Short access total locomotion0.90.92.3-0.70.81.5-0.5
One hour access (0.3 mA shock)0.10.10.2-0.40.10.5-0.1
Compulsive drug intake0.00.00.10.0-0.20.00.2
One hour access (shock baseline)0.10.10.4-0.10.10.4-0.6
Social response proportion0.60.61.1-0.80.81.10.1
Social responses0.60.81.4-0.90.91.2-0.3
Social time1.21.52.41.6-1.1-1.5-0.5
Soleus weight0.41.13.0-0.60.9-0.51.7
Bone: stiffness0.30.61.2-0.20.60.81.1
Tibialis anterior weight0.00.00.10.10.1-0.40.1
Time to tail flick, vehicle, before self-admin0.80.82.40.5-0.0-1.50.8
Time to tail flick, vehicle, after self-admin0.20.20.50.5-0.2-0.7-0.1
Time to tail flick, test, before self-admin0.30.30.6-0.70.50.8-0.3
Time to tail flick, test, after self-admin1.21.33.01.7-0.8-0.8-0.8
Delta time to tail flick, vehicle, before/after SA0.60.60.6-0.70.80.70.7
Delta time to tail flick, test, before/after SA2.32.14.02.0-1.3-1.5-0.6
Tibia length0.00.10.1-0.2-0.1-0.30.3
Ambulatory time before self-admin0.10.10.3-0.50.10.50.1
Ambulatory time after self-admin0.20.20.50.2-0.10.5-0.7
Bone: tissue strength0.40.40.50.7-0.1-0.70.7
Total heroin consumption1.21.42.8-1.11.00.71.7
Bone: trabecular number1.21.92.41.5-1.5-0.9-1.6
Bone: trabecular spacing4.45.77.5-2.72.72.41.3
Bone: trabecular thickness0.30.30.60.5-0.8-0.3-0.5
Bone: trabecular tissue density0.20.30.50.2-0.7-0.50.7
Water consumed over 24 hours1.51.92.6-1.61.61.20.9
Number of responses in last shaping day0.00.00.10.3-0.10.0-0.3