Etv2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc alternative TSS XM_039093962.2 0.01 0.01 9.2e-03 0.01 0 0 0 3.2e-02 1.6e-01 1.6e-01 2.7e-01
2 IL gene expression Etv2 0.15 0.12 8.9e-03 0.04 0.07 0.07 0.01 4.5e-02 1.0e-02 8.1e-03 1.4e-01
3 Brain gene expression Etv2 0.04 0.04 7.8e-04 0.03 0.02 0.01 0.01 1.2e-03 4.5e-03 3.7e-02 1.6e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.22.02.21.4-1.3-1.5
Area under the delay curve0.40.50.80.9-0.00.8
BMI with tail0.20.81.1-0.41.01.0
BMI without tail0.10.20.60.80.00.3
Body weight2.310.315.84.0-2.9-2.5
Weight adjusted by age0.10.10.20.4-0.3-0.4
Bone surface1.01.93.51.9-1.1-1.0
Bone volume1.32.33.61.9-1.3-1.3
Breakpoint value in progressive ratio session0.40.41.11.0-0.30.3
Number of licking bursts2.33.84.7-1.71.92.2
Context. condit. distance diff. score0.30.30.8-0.00.50.9
Locomotion velocity, session 10.20.30.4-0.70.2-0.5
Locomotion distance, session 10.20.30.70.80.30.0
Locomotion velocity, session 20.70.81.2-1.11.00.4
Locomotion distance, session 22.94.06.8-1.42.61.8
Locomotion velocity, session 30.40.50.9-0.60.90.3
Locomotion distance, session 30.80.92.11.40.50.6
Stereotopy head waving bouts, day 30.50.60.8-0.9-0.5-0.9
Stereotopy head waving duration, day 30.50.71.5-1.2-0.4-0.6
Locomotion velocity, session 70.20.20.30.30.50.4
Locomotion distance, session 70.10.10.10.20.2-0.4
Stereotopy head waving bouts, day 71.92.22.8-1.31.41.7
Stereotopy head waving duration, day 71.51.92.4-1.61.21.3
Locomotion velocity, session 84.14.95.7-2.12.42.2
Locomotion distance, session 82.33.44.8-1.02.22.0
Degree of sensitization distance0.50.50.8-0.5-0.7-0.9
Degree of sensitization stereotypy2.12.33.7-1.01.51.9
Conditioned locomotion1.01.11.2-1.01.11.1
Cocaine response after cond. corrected0.50.61.2-0.4-0.7-1.1
Cocaine response after cond. not corrected1.11.32.7-0.4-1.1-1.6
Cocaine response before conditioning1.21.41.61.2-1.3-1.1
Saline control response0.20.20.5-0.70.2-0.4
Bone: connectivity density0.30.40.70.9-0.5-0.5
Bone: cortical apparent density1.41.92.5-1.61.60.8
Bone: cortical area1.52.32.51.6-1.5-1.5
Bone: cortical porosity2.32.54.7-0.81.52.2
Bone: cortical porosity3.23.56.0-1.11.82.4
Bone: cortical thickness0.91.41.71.1-1.2-1.3
Bone: cortical thickness0.30.30.7-0.80.50.0
Bone: cortical tissue density1.72.33.1-1.71.71.0
Condit. Reinf. active minus inactive responses0.10.10.1-0.20.40.4
Condit. Reinf. active-inactive response ratio0.20.20.30.0-0.5-0.6
Condit. Reinf. active responses2.22.83.4-1.51.91.6
Condit. Reinf. inactive responses4.65.67.3-2.02.72.4
Incentive salience index mean0.30.30.5-0.20.70.7
Condit. Reinf. lever presses0.30.40.80.10.50.9
Condit. Reinf. active minus inactive responses0.70.91.41.2-0.8-0.7
Condit. Reinf. active-inactive response ratio0.00.00.0-0.20.1-0.1
Condit. Reinf. active responses1.72.34.42.1-1.3-1.0
Condit. Reinf. inactive responses1.41.84.52.1-0.9-0.3
Condit. Reinf. lever presses5.98.212.63.5-2.8-2.1
Condit. Reinf. lever reinforcers received1.82.55.42.3-1.2-0.8
Conditioned reinforcement - actives0.30.61.2-1.10.70.1
Conditioned reinforcement - inactives1.11.73.80.21.12.0
Conditioned locomotion2.12.83.7-1.91.71.4
Patch foraging indifference point 0 sec0.00.00.00.2-0.20.1
Patch foraging indifference point AUC0.40.50.8-0.90.70.6
Delay disc. indifference point, 0s delay1.11.22.20.11.21.5
Delay disc. indifference point, 16s delay0.60.71.01.0-0.11.0
Delay disc. indifference point, 2s delay0.20.30.60.80.20.4
Delay disc. indifference point, 24s delay0.91.02.51.6-0.70.1
Delay disc. indifference point, 4s delay0.40.51.20.30.31.1
Delay disc. indifference point, 8s delay0.30.40.80.9-0.60.1
Indifference point function ln k0.10.10.20.30.0-0.5
Indifference point function log k0.10.10.20.30.0-0.5
Patch foraging total patch changes 0 sec0.00.00.10.3-0.20.1
Patch foraging total patch changes 12 sec0.00.00.1-0.1-0.3-0.1
Patch foraging total patch changes 18 sec0.20.30.5-0.30.40.7
Patch foraging total patch changes 24 sec0.20.41.01.0-0.40.1
Patch foraging total patch changes 6 sec0.00.00.0-0.1-0.2-0.1
Patch foraging time to switch 0 sec0.20.41.1-1.10.10.0
Patch foraging water rate 0 sec0.51.01.5-0.81.21.0
Patch foraging water rate 12 sec0.30.61.61.3-0.4-0.0
Patch foraging water rate 18 sec0.00.00.1-0.10.30.1
Patch foraging water rate 24 sec1.72.43.8-0.01.81.9
Patch foraging water rate 6 sec0.50.71.81.40.00.5
Seeking ratio, delayed vs. immediate footshock0.60.71.61.30.10.8
Distance traveled before self-admin0.00.00.1-0.20.30.1
Distance traveled after self-admin1.72.22.91.7-1.5-1.1
Extensor digitorum longus weight0.10.40.8-0.7-0.0-0.9
Bone: elastic displacement0.30.30.50.1-0.7-0.7
Bone: elastic work1.92.53.01.7-1.7-1.3
Bone: endosteal estimation1.12.43.21.8-1.5-1.3
Bone: endosteal perimeter0.51.22.21.5-0.9-0.7
Epididymis fat weight0.00.00.00.20.2-0.2
Delta time in closed arm before/after self-admin1.11.01.71.3-1.0-0.7
Delta time in open arm before/after self-admin0.40.41.0-1.00.4-0.1
Diff in mean of infusions in LGA sessions1.31.62.2-1.01.21.5
Delay discount exponential model param0.50.51.1-1.10.3-0.6
Extinction: sum of active levers before priming4.54.95.42.1-2.3-2.2
Active lever presses in extinction session 64.34.36.91.0-2.2-2.6
Bone: final force1.62.54.12.0-1.5-1.0
Bone: final moment2.03.24.82.2-1.7-1.3
Food consumed during 24 hour testing period0.40.51.11.00.10.6
Glucose0.30.40.9-0.4-0.4-1.0
Heart weight0.10.20.40.40.20.6
Delay discount hyperbolic model param0.40.40.8-0.90.1-0.7
Intermittent access intake day 1-15 change0.91.92.61.6-1.3-1.1
Intermittent access intake escalation0.81.71.81.3-1.2-1.3
Intermittent access intake escalation 21.92.12.41.4-1.6-1.4
Intermitt. access day 1 inactive lever presses0.72.66.32.5-1.20.3
Intermitt. access day 15 inactive lever presses0.51.01.81.20.11.3
Intermitt. access escalation Index0.60.91.4-0.61.21.0
Intermittent access day 1 total infusions3.55.67.0-1.82.62.6
Intermittent access day 15 total infusions0.60.91.2-0.41.11.1
Intermittent access terminal intake (last 3 days)1.52.03.2-0.71.61.8
Intermittent access total infusions2.22.63.5-1.01.81.9
Intermittent access day 1 locomotion4.45.68.7-1.22.53.0
Intermittent access day 15 total locomotion0.71.32.4-0.31.31.5
Intermittent access total locomotion3.13.74.6-1.42.12.1
Intermittent access standard deviation1.02.14.72.2-1.2-0.4
Left kidney weight2.09.210.73.3-2.9-2.9
Right kidney weight2.612.013.13.5-3.3-3.6
Cocaine induced anxiety0.00.00.0-0.0-0.1-0.2
Post-drug Anxiety0.10.10.3-0.10.10.5
Baseline Anxiety0.40.41.20.40.21.1
Tail length3.915.122.04.7-3.7-3.1
Length with tail5.624.435.45.9-4.8-3.9
Length without tail2.99.312.93.6-2.9-2.6
Times rat made contact with spout0.30.40.8-0.1-0.5-0.9
Lifetime Intake1.72.12.7-1.21.61.5
Liver weight, left0.10.20.6-0.80.30.1
Liver weight, right0.10.20.4-0.60.3-0.3
Locomotor activity0.50.81.4-0.9-0.5-1.2
Locomotor testing distance0.40.71.6-1.30.1-0.7
Locomotor testing rearing0.91.93.9-2.01.30.3
Locomotion in novel chamber0.10.10.4-0.6-0.0-0.1
Locomotion in novel chamber post-restriction0.00.00.0-0.1-0.10.2
Fecal boli incidents, locomotor time 11.52.13.9-2.01.21.1
Change in fecal boli incidents, locomotor task1.11.11.60.3-1.3-1.3
Time >=10cm from walls, locomotor time 10.10.10.10.4-0.40.1
Bouts of movement, locomotor time 10.40.50.90.60.60.9
Total resting periods, locomotor time 10.40.40.70.50.50.9
Rest time, locomotor task time 10.91.11.4-1.10.81.2
Distance moved, locomotor task time 10.10.10.3-0.20.5-0.0
Vertical activity count, locomotor time 10.41.02.01.4-0.8-0.7
Time >=10cm from walls, locomotor time 20.91.41.6-1.11.11.3
Bouts of movement, locomotor time 20.00.00.00.20.00.0
Total resting periods, locomotor time 20.00.00.0-0.00.00.1
Rest time, locomotor task time 20.10.10.2-0.40.10.5
Distance moved, locomotor task time 20.40.51.0-0.51.00.5
Vertical activity count, locomotor time 20.20.30.80.9-0.1-0.1
Light reinforcement 10.20.40.6-0.30.80.8
Light reinforcement 21.62.53.3-1.81.71.1
Bone: marrow area1.22.63.31.8-1.6-1.4
Bone: maximum diameter1.01.92.71.6-1.4-1.1
Bone: maximum force2.23.96.62.6-1.8-1.4
Bone: maximum moment2.54.57.12.7-1.9-1.6
Mean time between licks in bursts0.30.61.0-0.31.00.9
Mean num. licks in bursts2.53.95.51.5-2.0-2.3
Cd content in liver0.00.00.0-0.1-0.10.1
Co content in liver0.20.20.5-0.70.0-0.0
Cu content in liver0.70.91.51.2-0.8-0.7
Fe content in liver0.10.20.4-0.70.10.3
K content in liver0.00.00.00.1-0.10.0
Mg content in liver0.20.20.5-0.7-0.0-0.3
Mn content in liver0.40.40.4-0.7-0.6-0.6
Na content in liver0.40.40.50.7-0.7-0.4
Rb content in liver0.30.41.0-0.20.31.0
Se content in liver1.92.25.3-2.31.10.4
Sr content in liver0.20.10.2-0.4-0.4-0.3
Zn content in liver0.70.81.8-1.30.60.4
Bone: minimum diameter1.32.35.12.3-1.2-0.6
Time in familiar zone, hab. session 11.41.43.00.5-0.9-1.7
Time in novel zone, hab. session 12.52.54.7-1.01.32.2
Total zone transitions, hab. session 10.30.40.7-0.10.80.6
Total locomotion distance, hab. session 10.50.71.31.2-0.7-0.3
Locomotion velocity, hab. session 10.40.60.80.9-0.8-0.6
Time in familiar zone, hab. session 22.42.64.11.3-2.0-1.4
Time in novel zone, hab. session 21.01.11.7-0.91.30.8
Total zone transitions, hab. session 23.14.05.2-1.92.31.8
Total locomotion distance, hab. session 20.50.61.3-0.20.71.2
Locomotion velocity, hab. session 20.40.51.0-0.30.71.0
Novel to familiar place preference ratio0.10.10.10.4-0.10.0
Novelty place preference0.00.00.10.20.00.2
Time in novel zone, NPP test0.00.00.10.10.20.3
Total zone transitions, NPP test0.20.20.6-0.30.8-0.1
Total locomotion distance, NPP test2.02.83.51.9-1.5-1.6
Locomotion velocity, NPP test2.23.13.92.0-1.7-1.6
Intraocular pressure0.10.20.4-0.20.10.6
Delta distance traveled before/after self-admin2.42.63.61.9-1.6-1.2
Delta ambulatory time before/after self-admin1.82.23.71.9-1.4-1.0
Parametrial fat weight0.81.94.0-0.4-1.3-2.0
Pavlov. Cond. lever latency0.20.20.40.2-0.6-0.6
Pavlov. Cond. magazine entry latency0.20.30.4-0.60.70.4
Pavlov. Cond. change in total contacts1.31.42.2-0.41.31.5
Pavlov. Cond. index score0.30.30.5-0.50.70.6
Pavlov. Cond. latency score0.30.40.5-0.40.70.7
Pavlov. Cond. lever contacts0.10.10.20.20.20.4
Pavlov. Cond. magazine entry number0.30.30.50.4-0.7-0.6
Pavlov. Cond. intertrial magazine entries0.81.01.5-1.21.10.4
Pavlov. Cond. lever-magazine prob. diff.0.40.50.7-0.60.80.7
Pavlov. Cond. response bias0.00.00.1-0.30.2-0.1
Pavlov. Cond. lever latency3.85.110.0-3.22.01.2
Pavlov. Cond. magazine entry latency2.83.35.62.4-1.9-0.9
Pavlov. Cond. change in total contacts4.67.414.03.7-2.5-1.3
Pavlov. Cond. index score4.96.511.63.4-2.5-1.4
Pavlov. Cond. latency score4.25.510.23.2-2.2-1.2
Pavlov. Cond. lever contacts4.05.610.93.3-2.1-1.2
Pavlov. Cond. magazine entry number4.05.08.1-2.82.21.5
Pavlov. Cond. intertrial magazine entries0.81.22.2-1.50.90.7
Pavlov. Cond. lever-magazine prob. diff.4.86.510.93.3-2.5-1.5
Pavlov. Cond. response bias4.66.312.43.5-2.2-1.3
Time in closed arm before self-admin1.92.52.9-1.41.71.6
Time in closed arm after self-admin0.50.61.30.30.61.1
Time in open arm before self-admin6.06.67.82.7-2.8-2.2
Time in open arm after self-admin1.92.12.80.9-1.6-1.7
Bone: periosteal estimation1.93.94.92.2-1.9-1.8
Bone: periosteal perimeter1.11.92.01.4-1.4-1.3
Bone: post-yield work0.71.02.91.7-0.5-0.0
Progressive ratio test 1 active lever presses0.60.81.4-0.10.91.2
Progressive ratio test 1 breakpoint0.60.81.5-0.10.91.2
Progressive ratio test 1 inactive lever presses1.92.85.80.21.62.4
Progressive ratio test 2 active lever presses0.50.60.9-0.70.90.6
Progressive ratio test 2 breakpoint0.70.81.1-0.81.10.7
Progressive ratio test 2 inactive lever presses1.22.04.30.31.32.1
Incentive Sensitization - Responses0.60.91.2-1.01.10.6
Incentive Sensitization - Breakpoint0.60.81.2-1.01.10.6
Sum of active levers in priming session hrs 5-60.10.10.1-0.40.20.1
Progressive ratio0.10.10.3-0.10.30.5
Food seeking constrained by brief footshock1.92.33.71.9-1.5-0.9
Seeking ratio, punishment vs. effort0.30.40.80.9-0.5-0.2
Retroperitoneal fat weight0.73.16.7-1.2-1.1-2.6
Reaction time number correct0.00.10.10.1-0.1-0.4
Reaction time mean minus median0.20.60.70.8-0.8-0.7
Reaction time mean minus median AUC0.61.61.81.2-1.4-1.2
Reaction time num false alarms0.71.01.4-1.20.80.9
Reaction time num false alarms AUC0.71.11.8-1.30.80.9
Reaction time trials correct on left0.00.10.10.1-0.1-0.4
Reaction time trials on left0.00.10.20.1-0.1-0.4
Reaction time mean0.10.20.30.6-0.3-0.3
Reaction time mean AUC0.10.20.30.5-0.4-0.4
Median of all reaction times0.00.00.00.20.10.0
Reaction time omissions0.20.30.7-0.2-0.3-0.8
Reaction time false alarm rate0.60.91.2-1.10.71.0
Reaction time premature initiation rate0.30.51.10.00.51.1
Reaction time premature initiations0.20.30.8-0.00.50.9
Std. dev. reaction times0.30.61.01.0-0.7-0.5
Reaction time trials completed0.00.10.20.1-0.1-0.4
Reaction time trials AUC0.10.10.4-0.0-0.2-0.6
Run reversals in cocaine runway, females0.30.30.80.9-0.3-0.1
Run reversals in cocaine runway, males2.42.44.00.2-1.7-2.0
Latency to leave start box in cocaine runway0.10.10.20.20.40.5
Latency to leave start box in cocaine runway, F0.40.40.80.00.80.9
Latency to leave start box in cocaine runway, M0.00.00.1-0.20.20.1
Std. dev. time between licks in bursts1.01.32.8-0.11.01.7
Total sessions with >9 infusions0.70.91.7-1.30.90.3
Short access day 1 total inactive lever presses1.92.44.70.31.62.2
Short access day 10 total inactive lever presses0.41.02.11.40.20.9
Short access day 1 total infusions0.20.30.4-0.40.70.6
Short access day 10 total infusions0.40.50.6-0.80.80.5
Short access total infusions0.70.91.4-1.21.00.6
Short access day 1 locomotion0.81.01.1-1.01.11.0
Short access day 10 total locomotion0.30.51.10.40.61.1
Short access total locomotion1.61.92.1-1.31.51.4
One hour access (0.3 mA shock)0.60.71.40.60.61.2
Compulsive drug intake0.40.51.0-0.10.71.0
One hour access (shock baseline)0.20.30.6-0.00.60.8
Social response proportion0.80.91.91.4-0.9-0.3
Social responses0.10.10.30.5-0.40.0
Social time0.71.02.51.6-0.6-0.2
Soleus weight0.00.00.1-0.1-0.2-0.3
Bone: stiffness0.91.52.91.7-0.9-0.8
Tibialis anterior weight0.30.92.1-0.3-0.6-1.4
Time to tail flick, vehicle, before self-admin0.40.40.5-0.60.70.5
Time to tail flick, vehicle, after self-admin0.20.20.40.6-0.6-0.1
Time to tail flick, test, before self-admin1.11.11.8-0.11.31.3
Time to tail flick, test, after self-admin0.10.10.1-0.20.30.3
Delta time to tail flick, vehicle, before/after SA0.70.60.91.0-0.9-0.4
Delta time to tail flick, test, before/after SA0.50.50.8-0.6-0.7-0.9
Tibia length2.15.99.63.1-2.1-1.9
Ambulatory time before self-admin0.00.00.10.00.10.3
Ambulatory time after self-admin2.93.46.02.5-1.8-1.0
Bone: tissue strength1.41.43.61.9-0.90.1
Total heroin consumption0.30.30.60.40.40.8
Bone: trabecular number1.22.03.71.9-1.2-1.0
Bone: trabecular spacing0.60.81.40.4-1.2-0.9
Bone: trabecular thickness0.00.00.1-0.00.3-0.0
Bone: trabecular tissue density0.91.32.3-1.5-0.3-1.2
Water consumed over 24 hours0.71.01.11.1-0.9-1.0
Number of responses in last shaping day0.00.00.10.00.30.1