Eif3k

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc mRNA stability Eif3k 0.02 0.01 2.9e-03 0.01 0.02 0.01 0.01 9.4e-03 2.9e-03 7.2e-03 1.5e-02
2 Adipose gene expression Eif3k 0.03 0.02 1.4e-03 0.01 0.01 0.01 0.01 1.8e-02 2.8e-02 1.6e-02 1.4e-02
3 Brain mRNA stability Eif3k 0.04 0.03 1.1e-04 0.05 0.04 0.04 0.05 1.1e-05 1.8e-04 1.0e-04 1.6e-05
4 PL mRNA stability Eif3k 0.04 0.03 8.9e-06 0.05 0.04 0.02 0.05 3.2e-06 4.1e-05 2.6e-03 3.3e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.2-0.10.20.30.4
Area under the delay curve0.00.00.10.3-0.20.20.1
BMI with tail0.10.40.9-0.90.70.40.6
BMI without tail0.20.40.60.3-0.7-0.7-0.5
Body weight2.711.513.13.6-3.5-3.0-3.3
Weight adjusted by age0.20.20.3-0.60.50.30.4
Bone surface0.30.50.90.9-0.7-0.6-0.5
Bone volume0.30.50.80.9-0.8-0.7-0.5
Breakpoint value in progressive ratio session1.51.72.41.0-1.6-1.2-1.3
Number of licking bursts1.92.23.4-1.31.81.31.5
Context. condit. distance diff. score0.10.10.1-0.30.30.30.3
Locomotion velocity, session 12.62.82.9-1.71.71.71.7
Locomotion distance, session 10.81.01.21.1-1.0-1.0-1.0
Locomotion velocity, session 20.50.50.6-0.80.70.70.7
Locomotion distance, session 20.60.91.5-1.20.90.70.8
Locomotion velocity, session 30.10.20.4-0.00.70.30.3
Locomotion distance, session 36.36.87.22.7-2.6-2.6-2.6
Stereotopy head waving bouts, day 30.70.81.4-1.21.10.50.5
Stereotopy head waving duration, day 32.93.44.2-2.12.01.61.7
Locomotion velocity, session 70.00.00.10.3-0.10.10.1
Locomotion distance, session 70.10.10.30.5-0.3-0.3-0.3
Stereotopy head waving bouts, day 70.10.10.2-0.50.20.10.1
Stereotopy head waving duration, day 71.11.42.1-1.51.21.01.0
Locomotion velocity, session 83.23.84.6-1.92.11.81.9
Locomotion distance, session 80.40.61.1-1.00.80.70.7
Degree of sensitization distance3.53.53.8-1.81.91.91.9
Degree of sensitization stereotypy0.00.00.2-0.40.1-0.0-0.0
Conditioned locomotion0.40.50.80.7-0.4-0.9-0.8
Cocaine response after cond. corrected0.50.50.60.8-0.7-0.8-0.7
Cocaine response after cond. not corrected0.80.91.10.9-0.8-1.1-0.9
Cocaine response before conditioning1.61.92.81.0-1.1-1.7-1.6
Saline control response0.40.61.00.3-0.8-1.0-0.7
Bone: connectivity density0.50.81.2-0.70.81.01.1
Bone: cortical apparent density2.43.24.3-2.11.81.71.6
Bone: cortical area2.23.33.71.6-1.8-1.9-1.9
Bone: cortical porosity0.80.91.3-1.21.00.90.8
Bone: cortical porosity1.01.01.5-1.21.10.90.8
Bone: cortical thickness1.01.62.11.1-1.2-1.4-1.3
Bone: cortical thickness0.10.10.2-0.40.50.20.1
Bone: cortical tissue density2.83.74.9-2.21.91.81.8
Condit. Reinf. active minus inactive responses0.20.20.5-0.40.70.40.4
Condit. Reinf. active-inactive response ratio0.20.20.4-0.40.60.30.3
Condit. Reinf. active responses1.01.31.5-1.11.21.11.1
Condit. Reinf. inactive responses0.70.80.9-0.90.81.01.0
Incentive salience index mean0.00.00.00.10.20.10.1
Condit. Reinf. lever presses0.10.20.30.6-0.4-0.3-0.3
Condit. Reinf. active minus inactive responses4.55.56.52.2-2.3-2.5-2.4
Condit. Reinf. active-inactive response ratio2.72.93.91.2-1.6-2.0-1.9
Condit. Reinf. active responses5.17.18.12.5-2.6-2.8-2.7
Condit. Reinf. inactive responses1.61.92.11.5-1.4-1.3-1.3
Condit. Reinf. lever presses7.910.712.23.5-3.2-3.3-3.1
Condit. Reinf. lever reinforcers received6.28.79.82.9-2.9-3.1-2.9
Conditioned reinforcement - actives0.50.51.00.6-0.4-1.0-0.5
Conditioned reinforcement - inactives2.32.53.31.8-1.6-1.3-1.6
Conditioned locomotion1.11.32.1-1.11.40.71.2
Patch foraging indifference point 0 sec0.40.61.10.6-0.6-1.0-0.7
Patch foraging indifference point AUC0.60.71.2-1.10.70.90.6
Delay disc. indifference point, 0s delay0.30.30.50.4-0.7-0.6-0.5
Delay disc. indifference point, 16s delay1.31.32.01.4-1.2-1.0-0.8
Delay disc. indifference point, 2s delay0.10.10.10.2-0.10.30.3
Delay disc. indifference point, 24s delay1.31.32.11.5-1.2-0.6-1.0
Delay disc. indifference point, 4s delay0.00.10.10.3-0.3-0.2-0.1
Delay disc. indifference point, 8s delay1.01.01.4-0.90.81.21.1
Indifference point function ln k0.70.91.51.2-0.8-1.0-0.7
Indifference point function log k0.70.91.51.2-0.8-1.0-0.7
Patch foraging total patch changes 0 sec0.40.71.20.8-0.7-1.1-0.8
Patch foraging total patch changes 12 sec0.20.30.50.3-0.5-0.6-0.7
Patch foraging total patch changes 18 sec0.30.41.0-1.00.50.40.2
Patch foraging total patch changes 24 sec0.60.70.70.8-0.9-0.8-0.8
Patch foraging total patch changes 6 sec0.10.10.1-0.0-0.3-0.3-0.4
Patch foraging time to switch 0 sec1.32.02.7-1.41.31.61.3
Patch foraging water rate 0 sec0.30.40.6-0.40.80.60.8
Patch foraging water rate 12 sec1.01.52.61.6-1.2-0.7-1.1
Patch foraging water rate 18 sec0.40.51.0-0.20.70.71.0
Patch foraging water rate 24 sec0.60.81.11.0-0.8-0.9-0.8
Patch foraging water rate 6 sec0.20.30.80.9-0.5-0.4-0.3
Seeking ratio, delayed vs. immediate footshock1.31.51.71.2-1.3-1.2-1.3
Distance traveled before self-admin2.22.32.61.4-1.5-1.5-1.6
Distance traveled after self-admin5.76.36.72.6-2.5-2.5-2.5
Extensor digitorum longus weight0.20.81.1-0.91.00.80.9
Bone: elastic displacement0.00.00.1-0.10.20.20.2
Bone: elastic work2.43.13.41.8-1.7-1.8-1.8
Bone: endosteal estimation1.12.53.11.5-1.8-1.5-1.5
Bone: endosteal perimeter1.12.22.71.6-1.7-1.4-1.3
Epididymis fat weight0.00.00.0-0.20.10.20.2
Delta time in closed arm before/after self-admin0.70.61.11.1-0.8-0.7-0.5
Delta time in open arm before/after self-admin0.00.00.1-0.30.20.0-0.0
Diff in mean of infusions in LGA sessions0.10.10.20.1-0.3-0.1-0.5
Delay discount exponential model param0.10.10.1-0.30.3-0.1-0.1
Extinction: sum of active levers before priming1.21.21.60.8-1.3-1.1-1.1
Active lever presses in extinction session 60.30.30.50.5-0.7-0.5-0.5
Bone: final force1.82.83.11.7-1.6-1.7-1.8
Bone: final moment2.74.44.72.1-2.0-2.2-2.2
Food consumed during 24 hour testing period0.50.61.11.0-0.6-0.7-0.6
Glucose0.30.40.7-0.20.50.70.8
Heart weight0.71.01.20.9-0.9-1.0-1.1
Delay discount hyperbolic model param0.00.00.1-0.20.2-0.2-0.2
Intermittent access intake day 1-15 change1.11.11.51.1-1.2-0.8-1.0
Intermittent access intake escalation0.90.81.11.0-1.1-0.8-0.8
Intermittent access intake escalation 22.72.73.41.4-1.8-1.6-1.7
Intermitt. access day 1 inactive lever presses0.60.71.71.3-0.8-0.4-0.4
Intermitt. access day 15 inactive lever presses0.40.41.21.1-0.5-0.3-0.3
Intermitt. access escalation Index0.30.20.60.2-0.4-0.8-0.4
Intermittent access day 1 total infusions0.10.10.40.20.3-0.6-0.1
Intermittent access day 15 total infusions1.01.11.51.1-0.9-1.2-1.0
Intermittent access terminal intake (last 3 days)1.61.72.01.3-1.2-1.4-1.3
Intermittent access total infusions0.80.81.40.9-0.6-1.2-0.8
Intermittent access day 1 locomotion0.20.20.80.20.3-0.9-0.0
Intermittent access day 15 total locomotion0.00.00.10.10.2-0.10.2
Intermittent access total locomotion0.30.30.7-0.40.80.10.7
Intermittent access standard deviation4.74.96.22.2-2.5-2.0-2.2
Left kidney weight2.98.29.12.8-2.8-2.9-3.0
Right kidney weight4.211.812.63.5-3.4-3.2-3.6
Cocaine induced anxiety0.00.00.0-0.0-0.00.2-0.1
Post-drug Anxiety0.40.40.5-0.60.60.70.6
Baseline Anxiety0.10.10.2-0.40.5-0.10.3
Tail length5.215.918.54.3-4.3-3.5-3.8
Length with tail7.828.634.75.9-5.6-4.7-5.2
Length without tail3.78.210.63.3-2.8-2.6-2.8
Times rat made contact with spout0.50.61.1-1.00.70.70.6
Lifetime Intake0.20.20.60.3-0.1-0.7-0.3
Liver weight, left0.10.10.3-0.60.30.20.2
Liver weight, right0.00.00.00.2-0.00.0-0.2
Locomotor activity0.60.91.3-1.10.71.00.9
Locomotor testing distance0.91.52.1-1.41.11.21.2
Locomotor testing rearing1.72.75.0-2.21.31.61.2
Locomotion in novel chamber0.40.50.8-0.90.50.60.8
Locomotion in novel chamber post-restriction0.10.10.10.3-0.30.0-0.1
Fecal boli incidents, locomotor time 12.83.14.0-1.41.81.82.0
Change in fecal boli incidents, locomotor task0.20.20.4-0.2-0.4-0.6-0.4
Time >=10cm from walls, locomotor time 10.00.00.0-0.10.10.00.1
Bouts of movement, locomotor time 10.30.30.50.6-0.7-0.5-0.3
Total resting periods, locomotor time 10.20.30.40.6-0.6-0.5-0.2
Rest time, locomotor task time 10.00.00.1-0.10.20.10.3
Distance moved, locomotor task time 10.10.10.20.0-0.3-0.2-0.4
Vertical activity count, locomotor time 11.01.01.30.8-1.1-1.0-1.0
Time >=10cm from walls, locomotor time 20.00.00.1-0.1-0.0-0.1-0.3
Bouts of movement, locomotor time 20.20.20.30.00.50.40.6
Total resting periods, locomotor time 20.20.20.4-0.10.60.30.6
Rest time, locomotor task time 20.30.30.40.5-0.5-0.6-0.5
Distance moved, locomotor task time 20.10.10.4-0.60.20.20.1
Vertical activity count, locomotor time 20.10.10.20.1-0.5-0.3-0.3
Light reinforcement 10.20.40.7-0.60.50.80.5
Light reinforcement 26.48.510.3-2.63.02.73.2
Bone: marrow area1.22.63.21.5-1.8-1.5-1.6
Bone: maximum diameter1.62.93.11.8-1.7-1.8-1.6
Bone: maximum force2.95.15.72.1-2.2-2.4-2.3
Bone: maximum moment4.06.97.72.5-2.6-2.8-2.6
Mean time between licks in bursts0.20.20.30.4-0.3-0.5-0.6
Mean num. licks in bursts0.60.71.40.4-1.2-0.7-0.9
Cd content in liver0.50.50.9-1.00.60.70.6
Co content in liver1.72.02.3-1.41.51.21.5
Cu content in liver1.41.72.31.5-1.1-1.3-1.3
Fe content in liver0.30.40.7-0.30.50.80.8
K content in liver0.70.70.90.9-0.7-0.9-0.9
Mg content in liver0.10.10.10.30.0-0.3-0.4
Mn content in liver0.40.50.80.2-0.4-0.9-0.9
Na content in liver5.55.85.92.3-2.4-2.4-2.4
Rb content in liver0.00.00.00.1-0.00.0-0.1
Se content in liver3.84.66.0-2.42.22.01.9
Sr content in liver0.60.60.7-0.80.90.60.8
Zn content in liver0.20.30.4-0.30.60.50.6
Bone: minimum diameter5.410.211.32.7-3.4-3.3-3.3
Time in familiar zone, hab. session 10.20.20.40.4-0.6-0.4-0.4
Time in novel zone, hab. session 10.10.10.2-0.30.50.20.2
Total zone transitions, hab. session 10.40.50.70.3-0.8-0.9-0.8
Total locomotion distance, hab. session 12.63.64.31.6-2.1-1.9-2.0
Locomotion velocity, hab. session 11.01.51.71.0-1.3-1.3-1.3
Time in familiar zone, hab. session 20.50.50.70.8-0.7-0.6-0.6
Time in novel zone, hab. session 20.60.60.7-0.90.80.80.7
Total zone transitions, hab. session 20.10.10.2-0.50.40.10.1
Total locomotion distance, hab. session 20.30.40.70.5-0.5-0.7-0.8
Locomotion velocity, hab. session 20.30.40.60.3-0.4-0.7-0.8
Novel to familiar place preference ratio1.01.01.50.7-1.2-0.9-1.0
Novelty place preference0.90.91.30.7-1.2-0.9-1.0
Time in novel zone, NPP test0.50.50.80.4-0.9-0.7-0.7
Total zone transitions, NPP test0.20.20.3-0.40.40.50.6
Total locomotion distance, NPP test1.52.02.41.3-1.5-1.4-1.4
Locomotion velocity, NPP test1.92.73.11.5-1.8-1.6-1.6
Intraocular pressure0.00.10.10.20.00.30.3
Delta distance traveled before/after self-admin0.50.60.90.9-0.8-0.6-0.6
Delta ambulatory time before/after self-admin1.11.21.41.1-1.1-1.2-1.0
Parametrial fat weight0.51.01.4-1.01.20.91.0
Pavlov. Cond. lever latency0.10.10.2-0.30.30.40.4
Pavlov. Cond. magazine entry latency0.10.10.2-0.20.40.30.4
Pavlov. Cond. change in total contacts0.00.00.00.10.1-0.1-0.0
Pavlov. Cond. index score0.00.00.00.00.0-0.1-0.1
Pavlov. Cond. latency score0.00.00.10.1-0.1-0.3-0.2
Pavlov. Cond. lever contacts0.70.90.91.0-0.9-0.9-0.9
Pavlov. Cond. magazine entry number0.00.10.10.2-0.3-0.1-0.2
Pavlov. Cond. intertrial magazine entries0.20.20.4-0.70.50.30.3
Pavlov. Cond. lever-magazine prob. diff.0.10.10.10.2-0.1-0.4-0.3
Pavlov. Cond. response bias0.10.10.10.3-0.2-0.4-0.3
Pavlov. Cond. lever latency3.75.05.6-2.42.32.22.1
Pavlov. Cond. magazine entry latency2.22.64.02.0-1.5-1.5-1.3
Pavlov. Cond. change in total contacts6.89.39.93.1-3.1-3.0-2.9
Pavlov. Cond. index score3.44.45.72.4-2.1-2.0-1.9
Pavlov. Cond. latency score3.34.15.52.3-2.0-1.9-1.8
Pavlov. Cond. lever contacts3.54.85.42.3-2.2-2.2-2.0
Pavlov. Cond. magazine entry number1.51.83.1-1.71.31.11.0
Pavlov. Cond. intertrial magazine entries0.91.11.5-1.01.21.10.9
Pavlov. Cond. lever-magazine prob. diff.3.94.96.22.5-2.2-2.2-2.0
Pavlov. Cond. response bias4.05.56.32.5-2.3-2.3-2.2
Time in closed arm before self-admin0.10.10.2-0.30.40.20.1
Time in closed arm after self-admin0.30.30.70.8-0.3-0.5-0.3
Time in open arm before self-admin1.21.31.61.3-1.3-1.0-1.1
Time in open arm after self-admin0.90.91.20.6-1.1-1.0-1.1
Bone: periosteal estimation2.14.34.91.9-2.2-2.1-2.1
Bone: periosteal perimeter1.83.03.41.7-1.8-1.7-1.7
Bone: post-yield work0.70.91.11.0-1.0-1.0-0.9
Progressive ratio test 1 active lever presses2.32.43.91.6-1.2-2.0-1.3
Progressive ratio test 1 breakpoint2.82.94.11.7-1.4-2.0-1.6
Progressive ratio test 1 inactive lever presses0.60.71.21.1-0.7-1.0-0.5
Progressive ratio test 2 active lever presses1.01.01.51.2-0.7-1.2-0.8
Progressive ratio test 2 breakpoint1.01.11.71.3-0.8-1.3-0.8
Progressive ratio test 2 inactive lever presses3.43.95.52.3-1.9-1.9-1.7
Incentive Sensitization - Responses0.00.00.10.4-0.00.00.0
Incentive Sensitization - Breakpoint0.00.00.10.10.20.30.2
Sum of active levers in priming session hrs 5-60.10.10.4-0.6-0.0-0.1-0.2
Progressive ratio0.50.60.7-0.80.60.80.8
Food seeking constrained by brief footshock3.13.84.21.8-1.9-2.0-2.0
Seeking ratio, punishment vs. effort2.32.83.11.8-1.5-1.8-1.7
Retroperitoneal fat weight1.13.64.3-1.91.92.11.8
Reaction time number correct0.00.10.1-0.0-0.1-0.3-0.4
Reaction time mean minus median0.20.30.50.7-0.3-0.4-0.6
Reaction time mean minus median AUC0.40.50.80.9-0.4-0.6-0.7
Reaction time num false alarms0.91.21.6-1.31.20.31.2
Reaction time num false alarms AUC1.21.72.2-1.51.40.61.4
Reaction time trials correct on left0.00.10.1-0.0-0.1-0.3-0.4
Reaction time trials on left0.00.00.1-0.0-0.1-0.3-0.3
Reaction time mean0.00.10.10.10.40.20.3
Reaction time mean AUC0.10.20.4-0.10.60.30.5
Median of all reaction times0.10.20.3-0.20.60.30.6
Reaction time omissions0.10.20.3-0.50.50.20.5
Reaction time false alarm rate1.11.52.2-1.21.30.71.5
Reaction time premature initiation rate0.00.00.00.1-0.10.10.0
Reaction time premature initiations0.00.00.00.0-0.10.0-0.1
Std. dev. reaction times0.10.20.40.6-0.1-0.3-0.4
Reaction time trials completed0.00.00.1-0.0-0.1-0.3-0.3
Reaction time trials AUC0.00.00.1-0.20.0-0.2-0.2
Run reversals in cocaine runway, females0.30.20.40.00.50.60.6
Run reversals in cocaine runway, males0.90.91.2-1.11.00.90.8
Latency to leave start box in cocaine runway0.10.10.3-0.30.30.50.2
Latency to leave start box in cocaine runway, F0.60.70.8-0.90.80.90.6
Latency to leave start box in cocaine runway, M0.10.10.20.5-0.3-0.2-0.2
Std. dev. time between licks in bursts0.60.70.90.7-0.9-0.8-0.8
Total sessions with >9 infusions0.20.20.3-0.40.4-0.60.1
Short access day 1 total inactive lever presses0.60.71.21.1-0.7-0.7-0.6
Short access day 10 total inactive lever presses0.30.40.91.0-0.5-0.4-0.3
Short access day 1 total infusions0.40.50.90.6-0.5-0.9-0.7
Short access day 10 total infusions0.10.10.2-0.30.5-0.20.2
Short access total infusions0.10.10.3-0.30.5-0.30.3
Short access day 1 locomotion1.51.62.3-1.51.30.81.3
Short access day 10 total locomotion0.50.61.50.7-0.4-1.2-0.5
Short access total locomotion0.30.30.4-0.50.6-0.50.4
One hour access (0.3 mA shock)1.51.72.21.4-1.2-1.5-1.1
Compulsive drug intake0.30.30.40.3-0.6-0.5-0.5
One hour access (shock baseline)0.30.30.50.7-0.4-0.6-0.4
Social response proportion4.75.15.62.2-2.2-2.2-2.4
Social responses0.10.20.40.6-0.5-0.0-0.3
Social time0.50.61.10.8-1.0-0.1-0.8
Soleus weight1.02.93.4-1.81.51.81.7
Bone: stiffness1.42.32.71.3-1.5-1.7-1.5
Tibialis anterior weight0.00.00.2-0.40.0-0.1-0.0
Time to tail flick, vehicle, before self-admin0.10.10.20.2-0.1-0.4-0.3
Time to tail flick, vehicle, after self-admin0.30.40.80.9-0.5-0.5-0.4
Time to tail flick, test, before self-admin0.00.00.0-0.20.2-0.2-0.2
Time to tail flick, test, after self-admin0.00.00.1-0.00.2-0.3-0.1
Delta time to tail flick, vehicle, before/after SA0.20.20.30.6-0.5-0.3-0.3
Delta time to tail flick, test, before/after SA0.00.00.0-0.00.1-0.10.0
Tibia length2.36.46.82.6-2.4-2.6-2.5
Ambulatory time before self-admin1.21.31.51.1-1.1-1.1-1.2
Ambulatory time after self-admin6.16.77.52.7-2.6-2.5-2.6
Bone: tissue strength4.74.65.02.1-2.1-2.2-2.1
Total heroin consumption1.31.52.10.7-1.3-1.3-1.4
Bone: trabecular number0.10.10.20.5-0.4-0.4-0.2
Bone: trabecular spacing1.72.22.51.3-1.5-1.5-1.6
Bone: trabecular thickness0.10.10.2-0.20.40.40.5
Bone: trabecular tissue density2.73.84.2-2.01.92.01.9
Water consumed over 24 hours0.80.91.11.0-0.9-1.0-1.0
Number of responses in last shaping day2.42.52.71.6-1.6-1.5-1.6