Efcab7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Efcab7 0.37 0.14 1.2e-04 0.02 0.03 0.03 0.02 1.1e-03 9.8e-05 6.9e-04 1.7e-03
2 LHb intron excision ratio chr5_119643229_119654376 0.87 0.07 1.3e-04 0.03 0.08 0.11 0.04 5.7e-02 6.3e-03 1.8e-03 4.5e-02
3 Eye gene expression Efcab7 0.36 0.21 1.4e-03 0.05 0.09 0.04 0.06 6.1e-02 1.7e-02 7.6e-02 3.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.91.8-0.3-1.30.9
Area under the delay curve2.52.95.2-1.62.30.9
BMI with tail0.51.92.6-1.1-1.4-1.6
BMI without tail1.03.24.3-1.3-1.9-2.1
Body weight0.31.41.9-0.8-1.4-1.3
Weight adjusted by age2.74.06.6-2.62.1-1.0
Bone surface2.03.65.2-1.7-2.3-1.6
Bone volume0.91.72.8-1.7-1.4-0.5
Breakpoint value in progressive ratio session1.51.83.11.4-1.80.6
Number of licking bursts0.20.30.70.10.8-0.2
Context. condit. distance diff. score1.72.13.20.6-1.71.8
Locomotion velocity, session 10.60.71.61.30.1-0.7
Locomotion distance, session 11.11.41.91.41.30.8
Locomotion velocity, session 20.10.20.3-0.40.6-0.0
Locomotion distance, session 20.30.51.01.00.3-0.6
Locomotion velocity, session 30.30.40.60.60.80.3
Locomotion distance, session 30.20.20.5-0.30.70.1
Stereotopy head waving bouts, day 30.40.51.10.00.51.0
Stereotopy head waving duration, day 30.81.01.50.70.91.2
Locomotion velocity, session 70.40.51.20.0-0.41.1
Locomotion distance, session 70.20.20.60.1-0.30.8
Stereotopy head waving bouts, day 70.30.30.8-0.30.2-0.9
Stereotopy head waving duration, day 70.40.51.30.10.5-1.2
Locomotion velocity, session 80.20.20.40.7-0.10.4
Locomotion distance, session 80.91.22.21.5-0.71.0
Degree of sensitization distance0.60.61.7-0.2-1.3-0.1
Degree of sensitization stereotypy0.40.41.30.00.1-1.1
Conditioned locomotion0.91.02.11.01.50.2
Cocaine response after cond. corrected0.40.50.80.40.9-0.7
Cocaine response after cond. not corrected0.30.30.50.70.2-0.7
Cocaine response before conditioning0.50.51.50.4-1.2-0.1
Saline control response0.10.10.20.40.1-0.2
Bone: connectivity density1.82.84.7-1.2-2.2-1.5
Bone: cortical apparent density3.34.58.02.30.42.8
Bone: cortical area0.40.60.70.7-0.8-0.9
Bone: cortical porosity1.21.33.20.1-1.8-0.8
Bone: cortical porosity0.91.01.90.2-1.4-1.0
Bone: cortical thickness0.30.51.41.2-0.20.3
Bone: cortical thickness0.20.20.30.5-0.50.3
Bone: cortical tissue density3.34.57.92.40.42.8
Condit. Reinf. active minus inactive responses0.70.71.11.1-0.4-1.0
Condit. Reinf. active-inactive response ratio1.61.72.91.7-1.4-0.6
Condit. Reinf. active responses0.70.92.20.7-0.1-1.5
Condit. Reinf. inactive responses0.40.50.90.00.7-1.0
Incentive salience index mean1.31.63.11.8-0.2-1.2
Condit. Reinf. lever presses1.62.36.32.5-0.2-0.8
Condit. Reinf. active minus inactive responses0.81.02.21.5-0.40.8
Condit. Reinf. active-inactive response ratio1.01.23.21.8-0.50.2
Condit. Reinf. active responses0.81.11.81.0-1.30.6
Condit. Reinf. inactive responses0.50.61.20.3-0.71.1
Condit. Reinf. lever presses1.01.33.50.2-0.6-1.9
Condit. Reinf. lever reinforcers received0.60.92.10.6-1.50.2
Conditioned reinforcement - actives0.50.92.51.6-0.1-0.1
Conditioned reinforcement - inactives0.10.20.4-0.40.60.3
Conditioned locomotion1.92.57.02.7-0.7-0.1
Patch foraging indifference point 0 sec3.36.212.6-2.30.7-3.6
Patch foraging indifference point AUC0.40.61.9-0.1-0.0-1.4
Delay disc. indifference point, 0s delay2.12.33.5-1.21.51.9
Delay disc. indifference point, 16s delay1.41.51.8-1.21.3-1.2
Delay disc. indifference point, 2s delay3.23.58.4-2.91.20.9
Delay disc. indifference point, 24s delay0.20.20.40.50.70.2
Delay disc. indifference point, 4s delay3.43.53.7-1.91.91.8
Delay disc. indifference point, 8s delay2.42.96.8-0.52.61.2
Indifference point function ln k0.20.40.80.0-0.50.9
Indifference point function log k0.20.40.80.0-0.50.9
Patch foraging total patch changes 0 sec3.05.712.2-2.20.5-3.5
Patch foraging total patch changes 12 sec1.31.62.4-0.71.4-1.5
Patch foraging total patch changes 18 sec1.42.15.7-0.5-0.6-2.4
Patch foraging total patch changes 24 sec0.71.32.7-0.8-0.7-1.7
Patch foraging total patch changes 6 sec1.62.57.3-0.3-0.2-2.7
Patch foraging time to switch 0 sec0.81.72.81.70.61.4
Patch foraging water rate 0 sec0.71.52.2-1.5-0.1-1.5
Patch foraging water rate 12 sec2.45.19.6-0.8-3.1-2.2
Patch foraging water rate 18 sec0.50.81.70.0-1.3-0.8
Patch foraging water rate 24 sec1.21.64.9-0.1-2.2-0.1
Patch foraging water rate 6 sec0.91.33.1-0.9-1.80.0
Seeking ratio, delayed vs. immediate footshock1.92.45.7-1.2-2.4-0.0
Distance traveled before self-admin0.40.50.6-0.5-0.7-0.8
Distance traveled after self-admin0.80.91.7-1.30.6-0.9
Extensor digitorum longus weight0.20.81.60.90.11.3
Bone: elastic displacement0.40.50.70.6-0.70.8
Bone: elastic work0.60.81.80.60.31.3
Bone: endosteal estimation1.02.13.2-1.2-1.8-1.3
Bone: endosteal perimeter0.91.93.3-1.0-1.2-1.8
Epididymis fat weight0.20.71.11.1-1.00.0
Delta time in closed arm before/after self-admin0.10.10.20.3-0.4-0.0
Delta time in open arm before/after self-admin1.61.62.3-0.61.5-1.5
Diff in mean of infusions in LGA sessions0.40.41.11.0-0.3-0.4
Delay discount exponential model param2.22.54.11.6-2.0-0.8
Extinction: sum of active levers before priming1.11.22.5-0.5-1.60.9
Active lever presses in extinction session 61.71.74.40.7-2.1-0.4
Bone: final force0.61.01.71.3-1.00.5
Bone: final moment0.50.71.31.0-1.1-0.1
Food consumed during 24 hour testing period0.30.40.80.90.30.5
Glucose0.40.61.10.7-1.0-0.5
Heart weight2.94.57.61.7-2.81.7
Delay discount hyperbolic model param3.03.35.02.0-2.2-0.9
Intermittent access intake day 1-15 change0.51.01.71.11.30.3
Intermittent access intake escalation0.71.52.91.01.70.8
Intermittent access intake escalation 20.80.92.51.60.10.4
Intermitt. access day 1 inactive lever presses0.62.13.1-1.8-1.7-0.3
Intermitt. access day 15 inactive lever presses0.91.82.81.1-1.71.2
Intermitt. access escalation Index4.15.78.8-3.02.80.6
Intermittent access day 1 total infusions0.40.61.01.0-0.50.8
Intermittent access day 15 total infusions1.52.23.11.51.71.2
Intermittent access terminal intake (last 3 days)0.50.71.31.10.60.6
Intermittent access total infusions1.51.73.71.90.61.0
Intermittent access day 1 locomotion0.91.23.51.9-0.0-0.1
Intermittent access day 15 total locomotion1.12.05.52.3-0.3-0.6
Intermittent access total locomotion2.12.67.12.7-0.7-0.1
Intermittent access standard deviation1.42.97.52.7-0.90.6
Left kidney weight0.21.22.41.0-1.50.3
Right kidney weight0.41.74.30.2-2.10.8
Cocaine induced anxiety4.05.716.3-0.84.00.2
Post-drug Anxiety4.95.211.4-1.83.41.1
Baseline Anxiety1.21.42.5-1.1-1.60.7
Tail length0.10.51.30.4-1.10.3
Length with tail0.00.10.1-0.1-0.4-0.1
Length without tail0.00.10.1-0.20.1-0.4
Times rat made contact with spout0.80.91.91.4-0.8-0.5
Lifetime Intake1.41.72.41.61.21.0
Liver weight, left1.42.34.41.2-1.12.1
Liver weight, right0.61.02.30.8-0.11.5
Locomotor activity0.20.40.6-0.80.7-0.3
Locomotor testing distance1.11.92.9-1.7-0.0-1.7
Locomotor testing rearing0.00.10.10.20.2-0.3
Locomotion in novel chamber1.11.42.50.2-1.6-1.3
Locomotion in novel chamber post-restriction1.62.55.32.31.40.5
Fecal boli incidents, locomotor time 11.21.73.81.22.00.1
Change in fecal boli incidents, locomotor task0.30.30.7-0.8-0.10.4
Time >=10cm from walls, locomotor time 11.71.83.6-1.91.3-0.3
Bouts of movement, locomotor time 10.40.51.1-0.1-1.1-0.5
Total resting periods, locomotor time 10.40.40.6-0.8-0.6-0.5
Rest time, locomotor task time 10.91.13.2-1.80.0-0.5
Distance moved, locomotor task time 10.10.10.20.20.20.4
Vertical activity count, locomotor time 10.20.41.1-1.0-0.30.1
Time >=10cm from walls, locomotor time 20.81.12.70.6-0.71.6
Bouts of movement, locomotor time 20.40.71.6-0.4-0.5-1.3
Total resting periods, locomotor time 20.30.61.5-0.6-0.2-1.2
Rest time, locomotor task time 21.51.93.3-1.81.5-0.4
Distance moved, locomotor task time 22.42.85.11.3-2.31.3
Vertical activity count, locomotor time 21.31.84.30.7-2.10.7
Light reinforcement 11.02.56.61.0-2.60.3
Light reinforcement 20.20.30.40.4-0.70.6
Bone: marrow area0.91.93.2-1.0-1.8-1.2
Bone: maximum diameter0.30.61.30.2-0.6-1.1
Bone: maximum force0.71.21.91.3-1.4-0.2
Bone: maximum moment0.81.42.61.0-1.6-0.9
Mean time between licks in bursts1.12.78.10.30.12.8
Mean num. licks in bursts0.50.81.80.7-1.3-0.3
Cd content in liver2.02.33.40.8-1.8-1.7
Co content in liver2.93.49.70.7-3.1-0.1
Cu content in liver1.01.21.71.3-0.91.0
Fe content in liver2.42.98.8-0.2-3.00.1
K content in liver0.80.82.10.3-0.41.5
Mg content in liver0.10.10.2-0.2-0.0-0.4
Mn content in liver0.50.61.21.10.6-0.4
Na content in liver3.03.24.81.1-2.21.9
Rb content in liver0.60.71.41.20.00.8
Se content in liver1.31.63.4-1.1-1.8-0.3
Sr content in liver2.01.73.6-0.3-1.9-1.2
Zn content in liver0.80.91.51.1-0.3-1.2
Bone: minimum diameter1.22.13.2-1.5-1.1-1.8
Time in familiar zone, hab. session 11.11.12.30.9-0.31.5
Time in novel zone, hab. session 12.92.95.9-1.60.2-2.4
Total zone transitions, hab. session 12.13.05.31.42.31.3
Total locomotion distance, hab. session 10.30.40.8-0.40.90.6
Locomotion velocity, hab. session 10.50.71.6-0.01.30.6
Time in familiar zone, hab. session 21.01.02.51.6-0.60.4
Time in novel zone, hab. session 21.01.01.9-1.40.8-0.7
Total zone transitions, hab. session 24.05.17.31.92.12.7
Total locomotion distance, hab. session 22.22.94.80.61.92.2
Locomotion velocity, hab. session 21.92.54.30.51.82.1
Novel to familiar place preference ratio0.70.71.30.0-1.0-1.1
Novelty place preference0.80.91.9-0.1-1.4-0.9
Time in novel zone, NPP test1.11.22.6-0.2-1.6-1.0
Total zone transitions, NPP test1.72.52.71.51.61.6
Total locomotion distance, NPP test0.60.91.3-0.41.21.0
Locomotion velocity, NPP test0.71.01.9-0.21.41.0
Intraocular pressure0.81.12.0-1.11.40.3
Delta distance traveled before/after self-admin0.60.71.5-0.51.2-0.6
Delta ambulatory time before/after self-admin0.60.71.7-0.61.3-0.3
Parametrial fat weight3.17.316.5-2.2-0.9-4.1
Pavlov. Cond. lever latency1.01.21.9-1.3-0.21.4
Pavlov. Cond. magazine entry latency1.41.74.32.10.9-0.0
Pavlov. Cond. change in total contacts0.91.01.51.2-0.1-1.2
Pavlov. Cond. index score1.11.43.21.80.5-0.9
Pavlov. Cond. latency score1.21.53.11.80.6-0.9
Pavlov. Cond. lever contacts1.01.22.61.60.2-1.0
Pavlov. Cond. magazine entry number1.72.26.0-2.4-0.7-0.2
Pavlov. Cond. intertrial magazine entries1.11.43.50.21.90.8
Pavlov. Cond. lever-magazine prob. diff.1.21.42.81.70.7-1.0
Pavlov. Cond. response bias1.41.74.82.20.1-0.6
Pavlov. Cond. lever latency1.31.82.9-0.9-1.31.7
Pavlov. Cond. magazine entry latency0.80.92.50.30.4-1.6
Pavlov. Cond. change in total contacts0.81.22.6-0.11.0-1.6
Pavlov. Cond. index score0.70.92.40.40.3-1.6
Pavlov. Cond. latency score0.60.82.10.50.3-1.4
Pavlov. Cond. lever contacts1.11.53.10.71.0-1.8
Pavlov. Cond. magazine entry number0.70.81.2-0.5-1.11.0
Pavlov. Cond. intertrial magazine entries0.60.92.30.10.61.5
Pavlov. Cond. lever-magazine prob. diff.0.70.92.50.20.3-1.6
Pavlov. Cond. response bias1.11.42.70.71.0-1.7
Time in closed arm before self-admin0.60.81.50.91.20.4
Time in closed arm after self-admin0.30.30.40.60.60.5
Time in open arm before self-admin0.60.71.3-1.1-0.7-0.5
Time in open arm after self-admin2.32.53.9-1.80.6-2.0
Bone: periosteal estimation0.81.73.0-0.5-1.7-1.3
Bone: periosteal perimeter0.71.21.80.6-1.2-1.3
Bone: post-yield work1.82.74.01.2-2.0-1.6
Progressive ratio test 1 active lever presses3.03.76.02.51.51.7
Progressive ratio test 1 breakpoint3.23.96.32.51.41.8
Progressive ratio test 1 inactive lever presses1.11.62.81.4-0.31.7
Progressive ratio test 2 active lever presses1.21.52.61.61.30.3
Progressive ratio test 2 breakpoint1.61.83.61.91.30.5
Progressive ratio test 2 inactive lever presses0.40.71.60.71.30.2
Incentive Sensitization - Responses0.30.40.60.70.7-0.4
Incentive Sensitization - Breakpoint0.30.40.50.60.7-0.6
Sum of active levers in priming session hrs 5-62.72.56.1-1.0-2.50.7
Progressive ratio0.30.51.31.10.10.5
Food seeking constrained by brief footshock2.22.75.41.31.02.3
Seeking ratio, punishment vs. effort0.30.50.90.7-0.30.9
Retroperitoneal fat weight0.20.71.8-0.50.1-1.4
Reaction time number correct0.51.02.7-0.51.6-0.0
Reaction time mean minus median0.30.81.51.0-0.3-1.2
Reaction time mean minus median AUC0.20.40.70.9-0.2-0.6
Reaction time num false alarms0.40.61.3-0.61.1-0.5
Reaction time num false alarms AUC0.71.11.4-0.81.2-1.1
Reaction time trials correct on left0.51.02.7-0.51.6-0.0
Reaction time trials on left0.51.02.7-0.51.6-0.1
Reaction time mean0.20.41.00.30.3-1.0
Reaction time mean AUC0.10.20.50.30.2-0.7
Median of all reaction times0.20.30.7-0.10.5-0.8
Reaction time omissions0.81.21.81.3-0.3-1.3
Reaction time false alarm rate0.50.61.4-0.70.2-1.2
Reaction time premature initiation rate0.91.23.2-0.3-1.80.5
Reaction time premature initiations0.20.30.4-0.2-0.70.6
Std. dev. reaction times0.71.33.80.3-0.3-1.9
Reaction time trials completed0.51.02.7-0.51.6-0.1
Reaction time trials AUC0.51.02.9-0.51.7-0.1
Run reversals in cocaine runway, females0.20.20.3-0.5-0.50.1
Run reversals in cocaine runway, males0.30.30.9-0.20.2-1.0
Latency to leave start box in cocaine runway0.10.20.30.3-0.30.5
Latency to leave start box in cocaine runway, F0.00.10.10.20.0-0.4
Latency to leave start box in cocaine runway, M0.40.41.0-0.2-0.41.0
Std. dev. time between licks in bursts1.01.44.0-2.0-0.20.2
Total sessions with >9 infusions2.22.75.90.92.41.1
Short access day 1 total inactive lever presses1.01.33.30.7-1.80.3
Short access day 10 total inactive lever presses2.25.37.2-2.6-2.7-1.3
Short access day 1 total infusions0.40.50.6-0.70.80.7
Short access day 10 total infusions2.22.87.52.7-0.40.9
Short access total infusions0.91.21.91.11.40.7
Short access day 1 locomotion0.40.41.31.1-0.1-0.1
Short access day 10 total locomotion1.73.26.22.5-1.6-0.8
Short access total locomotion1.41.64.62.20.40.3
One hour access (0.3 mA shock)2.83.29.43.1-0.5-0.4
Compulsive drug intake2.52.94.7-2.20.9-1.8
One hour access (shock baseline)2.23.48.52.9-0.11.3
Social response proportion0.20.20.30.40.5-0.5
Social responses2.02.66.32.5-1.20.4
Social time1.21.64.32.10.8-0.3
Soleus weight0.51.64.32.1-0.70.1
Bone: stiffness0.50.81.70.8-1.3-0.2
Tibialis anterior weight3.612.429.1-2.7-0.9-5.4
Time to tail flick, vehicle, before self-admin0.91.02.3-0.70.4-1.5
Time to tail flick, vehicle, after self-admin1.72.33.9-1.42.0-0.9
Time to tail flick, test, before self-admin0.80.92.5-1.60.00.3
Time to tail flick, test, after self-admin0.50.50.7-0.8-0.80.6
Delta time to tail flick, vehicle, before/after SA0.30.30.8-0.10.20.9
Delta time to tail flick, test, before/after SA0.10.10.3-0.2-0.1-0.5
Tibia length1.64.47.12.1-1.32.7
Ambulatory time before self-admin0.50.71.4-0.8-1.2-0.4
Ambulatory time after self-admin0.30.40.9-0.50.1-0.9
Bone: tissue strength0.80.81.91.40.3-0.7
Total heroin consumption1.11.31.81.0-1.31.0
Bone: trabecular number0.20.40.5-0.7-0.60.5
Bone: trabecular spacing0.20.30.60.8-0.40.0
Bone: trabecular thickness0.20.20.4-0.20.40.6
Bone: trabecular tissue density7.210.620.53.21.14.5
Water consumed over 24 hours0.50.71.11.1-1.0-0.4
Number of responses in last shaping day0.60.71.60.6-1.3-0.2