Efcab7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Efcab7 0.37 0.14 1.2e-04 0.02 0.03 0.03 0.02 1.1e-03 9.8e-05 6.9e-04 1.7e-03
2 LHb intron excision ratio chr5_119643229_119654376 0.87 0.07 1.3e-04 0.03 0.08 0.11 0.04 5.7e-02 6.3e-03 1.8e-03 4.7e-02
3 Eye gene expression Efcab7 0.36 0.21 1.4e-03 0.05 0.09 0.04 0.06 6.1e-02 1.7e-02 7.6e-02 3.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.91.9-0.31.40.9
Area under the delay curve1.82.85.1-1.6-2.30.9
BMI with tail0.51.92.6-1.11.3-1.6
BMI without tail0.63.24.3-1.31.9-2.1
Body weight0.31.41.9-0.81.4-1.3
Weight adjusted by age1.44.06.6-2.6-2.1-1.0
Bone surface1.83.65.2-1.72.3-1.6
Bone volume0.81.72.8-1.71.4-0.5
Breakpoint value in progressive ratio session1.01.83.11.41.80.6
Number of licking bursts0.10.30.70.1-0.9-0.2
Context. condit. distance diff. score1.82.13.20.61.71.8
Locomotion velocity, session 10.60.71.61.3-0.1-0.7
Locomotion distance, session 11.11.41.91.4-1.30.8
Locomotion velocity, session 20.10.20.3-0.4-0.6-0.0
Locomotion distance, session 20.30.51.01.0-0.3-0.6
Locomotion velocity, session 30.30.40.60.6-0.80.3
Locomotion distance, session 30.20.20.5-0.3-0.70.1
Stereotopy head waving bouts, day 30.40.41.10.0-0.51.0
Stereotopy head waving duration, day 30.81.01.50.7-0.91.2
Locomotion velocity, session 70.40.51.20.00.41.1
Locomotion distance, session 70.20.20.60.10.30.8
Stereotopy head waving bouts, day 70.30.30.8-0.3-0.2-0.9
Stereotopy head waving duration, day 70.40.51.30.1-0.5-1.2
Locomotion velocity, session 80.20.20.40.70.10.4
Locomotion distance, session 80.91.22.21.50.81.0
Degree of sensitization distance0.50.61.7-0.21.3-0.1
Degree of sensitization stereotypy0.40.41.30.0-0.1-1.1
Conditioned locomotion0.91.12.21.0-1.50.2
Cocaine response after cond. corrected0.30.50.90.4-0.9-0.7
Cocaine response after cond. not corrected0.20.30.50.7-0.2-0.7
Cocaine response before conditioning0.50.61.50.41.2-0.1
Saline control response0.10.10.20.4-0.1-0.2
Bone: connectivity density1.72.84.6-1.22.2-1.5
Bone: cortical apparent density2.84.58.02.3-0.32.8
Bone: cortical area0.40.60.70.70.8-0.9
Bone: cortical porosity1.21.33.20.11.8-0.8
Bone: cortical porosity0.91.01.90.21.4-1.0
Bone: cortical thickness0.30.51.41.20.20.3
Bone: cortical thickness0.20.20.30.50.50.3
Bone: cortical tissue density2.94.57.92.4-0.32.8
Condit. Reinf. active minus inactive responses0.60.71.11.10.4-1.0
Condit. Reinf. active-inactive response ratio1.61.72.91.71.3-0.6
Condit. Reinf. active responses0.70.92.20.70.1-1.5
Condit. Reinf. inactive responses0.40.50.90.0-0.7-1.0
Incentive salience index mean1.21.63.11.80.2-1.2
Condit. Reinf. lever presses1.52.36.32.50.2-0.8
Condit. Reinf. active minus inactive responses0.71.02.21.50.40.8
Condit. Reinf. active-inactive response ratio0.71.23.21.80.50.2
Condit. Reinf. active responses0.81.11.91.01.40.6
Condit. Reinf. inactive responses0.40.61.20.30.71.1
Condit. Reinf. lever presses0.91.33.50.20.6-1.9
Condit. Reinf. lever reinforcers received0.60.92.20.61.50.2
Conditioned reinforcement - actives0.20.92.51.60.1-0.1
Conditioned reinforcement - inactives0.10.20.3-0.4-0.60.3
Conditioned locomotion1.72.57.02.70.7-0.1
Patch foraging indifference point 0 sec2.26.212.6-2.3-0.7-3.6
Patch foraging indifference point AUC0.30.61.9-0.1-0.0-1.4
Delay disc. indifference point, 0s delay2.02.33.5-1.2-1.41.9
Delay disc. indifference point, 16s delay1.11.51.9-1.2-1.4-1.2
Delay disc. indifference point, 2s delay3.23.58.4-2.9-1.20.9
Delay disc. indifference point, 24s delay0.20.30.50.5-0.70.2
Delay disc. indifference point, 4s delay3.33.53.7-1.9-1.91.8
Delay disc. indifference point, 8s delay1.72.86.7-0.5-2.61.2
Indifference point function ln k0.10.40.80.00.50.9
Indifference point function log k0.10.40.80.00.50.9
Patch foraging total patch changes 0 sec2.05.712.2-2.2-0.5-3.5
Patch foraging total patch changes 12 sec1.21.72.4-0.7-1.5-1.5
Patch foraging total patch changes 18 sec0.92.15.7-0.50.5-2.4
Patch foraging total patch changes 24 sec0.41.22.7-0.80.6-1.7
Patch foraging total patch changes 6 sec1.52.57.3-0.30.2-2.7
Patch foraging time to switch 0 sec0.41.72.81.7-0.61.4
Patch foraging water rate 0 sec0.41.52.2-1.50.0-1.5
Patch foraging water rate 12 sec1.25.09.5-0.83.1-2.2
Patch foraging water rate 18 sec0.30.71.60.01.3-0.8
Patch foraging water rate 24 sec1.11.64.9-0.12.2-0.1
Patch foraging water rate 6 sec0.91.33.1-0.91.80.0
Seeking ratio, delayed vs. immediate footshock1.72.45.8-1.22.4-0.0
Distance traveled before self-admin0.20.50.6-0.50.7-0.8
Distance traveled after self-admin0.51.01.7-1.3-0.6-0.9
Extensor digitorum longus weight0.20.81.60.9-0.11.3
Bone: elastic displacement0.40.50.70.60.70.8
Bone: elastic work0.60.81.80.6-0.31.3
Bone: endosteal estimation0.92.13.2-1.21.8-1.3
Bone: endosteal perimeter0.81.93.3-1.01.2-1.8
Epididymis fat weight0.10.71.11.11.00.0
Delta time in closed arm before/after self-admin0.10.10.20.30.4-0.0
Delta time in open arm before/after self-admin1.41.62.4-0.6-1.6-1.5
Diff in mean of infusions in LGA sessions0.20.41.11.00.3-0.4
Delay discount exponential model param1.82.54.11.62.0-0.8
Extinction: sum of active levers before priming0.81.22.6-0.51.60.9
Active lever presses in extinction session 61.71.74.40.72.1-0.4
Bone: final force0.61.01.71.31.00.5
Bone: final moment0.50.71.31.01.1-0.1
Food consumed during 24 hour testing period0.20.40.80.9-0.30.5
Glucose0.40.61.10.71.0-0.5
Heart weight2.84.57.71.72.81.7
Delay discount hyperbolic model param2.53.34.92.02.2-0.9
Intermittent access intake day 1-15 change0.21.11.81.1-1.30.3
Intermittent access intake escalation0.31.52.91.0-1.70.8
Intermittent access intake escalation 20.50.92.51.6-0.10.4
Intermitt. access day 1 inactive lever presses0.22.13.1-1.81.8-0.3
Intermitt. access day 15 inactive lever presses0.31.92.91.11.71.2
Intermitt. access escalation Index1.85.78.8-3.0-2.80.6
Intermittent access day 1 total infusions0.20.61.01.00.50.8
Intermittent access day 15 total infusions0.92.23.11.5-1.71.2
Intermittent access terminal intake (last 3 days)0.40.71.31.1-0.60.6
Intermittent access total infusions1.41.73.71.9-0.61.0
Intermittent access day 1 locomotion0.61.23.51.9-0.0-0.1
Intermittent access day 15 total locomotion0.52.05.52.30.3-0.6
Intermittent access total locomotion2.12.57.12.70.7-0.1
Intermittent access standard deviation0.52.97.52.70.90.6
Left kidney weight0.11.22.41.01.60.3
Right kidney weight0.21.74.40.22.10.8
Cocaine induced anxiety2.15.716.3-0.8-4.00.2
Post-drug Anxiety4.55.211.2-1.8-3.31.1
Baseline Anxiety0.81.42.6-1.11.60.7
Tail length0.10.51.30.41.20.3
Length with tail0.00.10.1-0.10.4-0.1
Length without tail0.00.10.1-0.2-0.1-0.4
Times rat made contact with spout0.80.91.91.40.8-0.5
Lifetime Intake1.31.72.41.6-1.21.0
Liver weight, left1.42.44.41.21.12.1
Liver weight, right0.61.02.30.80.21.5
Locomotor activity0.20.40.6-0.8-0.6-0.3
Locomotor testing distance0.81.92.9-1.70.0-1.7
Locomotor testing rearing0.00.10.10.2-0.2-0.3
Locomotion in novel chamber1.11.42.40.21.6-1.3
Locomotion in novel chamber post-restriction0.82.65.32.3-1.40.5
Fecal boli incidents, locomotor time 10.71.83.91.2-2.00.1
Change in fecal boli incidents, locomotor task0.30.30.7-0.80.10.4
Time >=10cm from walls, locomotor time 11.51.83.6-1.9-1.3-0.3
Bouts of movement, locomotor time 10.40.51.1-0.11.0-0.5
Total resting periods, locomotor time 10.30.40.6-0.80.6-0.5
Rest time, locomotor task time 10.71.13.2-1.8-0.0-0.5
Distance moved, locomotor task time 10.00.10.20.2-0.20.4
Vertical activity count, locomotor time 10.10.41.1-1.00.30.1
Time >=10cm from walls, locomotor time 20.41.22.70.60.71.6
Bouts of movement, locomotor time 20.20.71.6-0.40.5-1.3
Total resting periods, locomotor time 20.20.61.5-0.60.1-1.2
Rest time, locomotor task time 21.11.93.3-1.8-1.5-0.4
Distance moved, locomotor task time 22.22.95.31.32.31.3
Vertical activity count, locomotor time 20.81.84.40.72.10.7
Light reinforcement 10.62.66.61.02.60.3
Light reinforcement 20.10.30.40.40.70.6
Bone: marrow area0.81.93.2-1.01.8-1.2
Bone: maximum diameter0.30.51.30.20.6-1.1
Bone: maximum force0.61.21.91.31.4-0.2
Bone: maximum moment0.71.42.51.01.6-0.9
Mean time between licks in bursts0.52.78.10.3-0.02.8
Mean num. licks in bursts0.30.81.80.71.3-0.3
Cd content in liver2.02.23.30.81.8-1.7
Co content in liver2.93.49.80.73.1-0.1
Cu content in liver1.01.21.71.30.91.0
Fe content in liver2.43.08.9-0.23.00.1
K content in liver0.80.82.10.30.51.5
Mg content in liver0.10.10.2-0.20.0-0.4
Mn content in liver0.50.61.21.1-0.6-0.4
Na content in liver2.93.25.01.12.21.9
Rb content in liver0.60.71.41.2-0.00.8
Se content in liver1.41.63.4-1.11.9-0.3
Sr content in liver2.01.73.6-0.31.9-1.2
Zn content in liver0.80.91.51.10.2-1.2
Bone: minimum diameter1.12.13.2-1.51.1-1.8
Time in familiar zone, hab. session 11.01.12.30.90.31.5
Time in novel zone, hab. session 12.62.95.9-1.6-0.2-2.4
Total zone transitions, hab. session 12.13.05.31.4-2.31.3
Total locomotion distance, hab. session 10.30.40.8-0.4-0.90.6
Locomotion velocity, hab. session 10.50.71.6-0.0-1.30.6
Time in familiar zone, hab. session 20.91.02.51.60.60.4
Time in novel zone, hab. session 20.91.01.9-1.4-0.8-0.7
Total zone transitions, hab. session 24.05.17.31.9-2.12.7
Total locomotion distance, hab. session 22.22.84.80.6-1.82.2
Locomotion velocity, hab. session 21.92.54.30.5-1.72.1
Novel to familiar place preference ratio0.60.71.30.00.9-1.1
Novelty place preference0.70.91.9-0.11.4-0.9
Time in novel zone, NPP test1.01.22.6-0.21.6-1.0
Total zone transitions, NPP test1.72.52.61.5-1.61.6
Total locomotion distance, NPP test0.60.81.3-0.4-1.11.0
Locomotion velocity, NPP test0.71.01.8-0.2-1.31.0
Intraocular pressure0.71.12.0-1.1-1.40.3
Delta distance traveled before/after self-admin0.60.71.5-0.5-1.2-0.6
Delta ambulatory time before/after self-admin0.40.71.7-0.6-1.3-0.3
Parametrial fat weight3.17.316.5-2.20.9-4.1
Pavlov. Cond. lever latency1.01.21.9-1.30.21.4
Pavlov. Cond. magazine entry latency1.41.74.32.1-1.0-0.0
Pavlov. Cond. change in total contacts0.91.01.51.20.1-1.2
Pavlov. Cond. index score1.11.43.21.8-0.5-0.9
Pavlov. Cond. latency score1.11.53.11.8-0.6-0.9
Pavlov. Cond. lever contacts1.01.22.61.6-0.2-1.0
Pavlov. Cond. magazine entry number1.72.26.0-2.40.7-0.2
Pavlov. Cond. intertrial magazine entries1.11.43.50.2-1.90.8
Pavlov. Cond. lever-magazine prob. diff.1.21.42.81.7-0.8-1.0
Pavlov. Cond. response bias1.41.74.82.2-0.1-0.6
Pavlov. Cond. lever latency1.31.82.9-0.91.31.7
Pavlov. Cond. magazine entry latency0.70.92.50.3-0.5-1.6
Pavlov. Cond. change in total contacts0.51.22.6-0.1-1.0-1.6
Pavlov. Cond. index score0.60.92.40.4-0.3-1.6
Pavlov. Cond. latency score0.50.82.10.5-0.3-1.4
Pavlov. Cond. lever contacts1.11.63.10.7-1.0-1.8
Pavlov. Cond. magazine entry number0.60.81.2-0.51.11.0
Pavlov. Cond. intertrial magazine entries0.40.92.30.1-0.61.5
Pavlov. Cond. lever-magazine prob. diff.0.60.92.50.2-0.3-1.6
Pavlov. Cond. response bias1.11.52.70.7-1.1-1.7
Time in closed arm before self-admin0.50.81.60.9-1.30.4
Time in closed arm after self-admin0.30.30.40.6-0.60.5
Time in open arm before self-admin0.60.71.3-1.10.7-0.5
Time in open arm after self-admin2.32.53.9-1.8-0.7-2.0
Bone: periosteal estimation0.71.63.0-0.51.7-1.3
Bone: periosteal perimeter0.61.21.80.61.2-1.3
Bone: post-yield work1.52.63.91.22.0-1.6
Progressive ratio test 1 active lever presses2.13.76.02.5-1.51.7
Progressive ratio test 1 breakpoint2.33.96.32.5-1.41.8
Progressive ratio test 1 inactive lever presses0.61.62.81.40.31.7
Progressive ratio test 2 active lever presses1.01.52.61.6-1.30.3
Progressive ratio test 2 breakpoint1.41.83.61.9-1.30.5
Progressive ratio test 2 inactive lever presses0.20.71.60.7-1.30.2
Incentive Sensitization - Responses0.20.40.60.7-0.8-0.4
Incentive Sensitization - Breakpoint0.20.40.50.6-0.7-0.6
Sum of active levers in priming session hrs 5-62.72.66.2-1.02.50.7
Progressive ratio0.20.51.31.1-0.10.5
Food seeking constrained by brief footshock2.12.75.41.3-0.92.3
Seeking ratio, punishment vs. effort0.20.50.90.70.30.9
Retroperitoneal fat weight0.20.71.8-0.5-0.1-1.4
Reaction time number correct0.31.02.7-0.5-1.6-0.0
Reaction time mean minus median0.10.81.51.00.2-1.2
Reaction time mean minus median AUC0.10.40.70.90.2-0.6
Reaction time num false alarms0.40.61.2-0.6-1.1-0.5
Reaction time num false alarms AUC0.51.11.4-0.8-1.2-1.1
Reaction time trials correct on left0.31.02.7-0.5-1.6-0.0
Reaction time trials on left0.31.02.7-0.5-1.6-0.1
Reaction time mean0.20.41.00.3-0.3-1.0
Reaction time mean AUC0.10.20.50.3-0.3-0.7
Median of all reaction times0.20.30.7-0.1-0.5-0.8
Reaction time omissions0.81.21.81.30.3-1.3
Reaction time false alarm rate0.50.61.4-0.7-0.2-1.2
Reaction time premature initiation rate0.81.23.3-0.31.80.5
Reaction time premature initiations0.10.30.4-0.20.70.6
Std. dev. reaction times0.41.33.80.30.3-1.9
Reaction time trials completed0.31.02.7-0.5-1.6-0.1
Reaction time trials AUC0.31.02.9-0.5-1.7-0.1
Run reversals in cocaine runway, females0.20.20.3-0.50.50.1
Run reversals in cocaine runway, males0.30.30.9-0.2-0.2-1.0
Latency to leave start box in cocaine runway0.10.20.30.30.30.5
Latency to leave start box in cocaine runway, F0.00.10.10.2-0.0-0.4
Latency to leave start box in cocaine runway, M0.40.41.0-0.20.41.0
Std. dev. time between licks in bursts0.71.44.0-2.00.30.2
Total sessions with >9 infusions2.12.65.80.9-2.41.1
Short access day 1 total inactive lever presses0.61.33.20.71.80.3
Short access day 10 total inactive lever presses0.85.37.3-2.62.7-1.3
Short access day 1 total infusions0.30.50.6-0.7-0.70.7
Short access day 10 total infusions1.72.87.52.70.40.9
Short access total infusions0.81.21.81.1-1.40.7
Short access day 1 locomotion0.30.41.31.10.1-0.1
Short access day 10 total locomotion0.83.26.22.51.6-0.8
Short access total locomotion1.11.64.62.2-0.40.3
One hour access (0.3 mA shock)2.73.29.43.10.4-0.4
Compulsive drug intake2.03.04.7-2.2-0.9-1.8
One hour access (shock baseline)1.33.48.52.90.11.3
Social response proportion0.20.20.30.4-0.6-0.5
Social responses2.02.66.32.51.20.4
Social time1.11.74.32.1-0.8-0.3
Soleus weight0.51.64.32.10.70.1
Bone: stiffness0.40.81.70.81.3-0.2
Tibialis anterior weight3.612.329.1-2.70.9-5.4
Time to tail flick, vehicle, before self-admin0.81.02.3-0.7-0.4-1.5
Time to tail flick, vehicle, after self-admin1.12.34.0-1.4-2.0-0.9
Time to tail flick, test, before self-admin0.80.92.5-1.6-0.00.3
Time to tail flick, test, after self-admin0.50.60.7-0.80.80.6
Delta time to tail flick, vehicle, before/after SA0.30.30.8-0.1-0.20.9
Delta time to tail flick, test, before/after SA0.10.10.3-0.20.1-0.5
Tibia length1.64.47.12.11.42.7
Ambulatory time before self-admin0.20.71.4-0.81.2-0.4
Ambulatory time after self-admin0.20.40.9-0.5-0.1-0.9
Bone: tissue strength0.80.81.91.4-0.3-0.7
Total heroin consumption1.11.31.81.01.31.0
Bone: trabecular number0.20.40.5-0.70.60.5
Bone: trabecular spacing0.20.20.60.80.40.0
Bone: trabecular thickness0.10.20.4-0.2-0.40.6
Bone: trabecular tissue density6.110.620.53.2-1.04.5
Water consumed over 24 hours0.40.71.11.11.0-0.4
Number of responses in last shaping day0.50.71.60.61.3-0.2