Dnaja1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Dnaja1 0.03 0.02 4.9e-03 0.02 0.01 0 0.01 3.3e-03 1.4e-02 7.2e-02 1.0e-02
2 Adipose gene expression Dnaja1 0.15 0.09 1.3e-12 0.1 0.1 0.1 0.1 5.2e-11 1.1e-10 4.7e-11 8.6e-11
3 NAcc gene expression Dnaja1 0.03 0.02 5.0e-05 0.02 0.03 0.02 0.02 4.5e-04 6.0e-05 5.9e-04 2.2e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.81.42.21.41.5-0.2
Area under the delay curve0.20.30.4-0.6-0.60.1
BMI with tail0.72.43.71.71.9-0.9
BMI without tail1.13.24.12.02.0-1.2
Body weight2.511.112.33.53.5-2.9
Weight adjusted by age0.60.91.50.90.5-1.2
Bone surface0.71.21.51.21.2-0.8
Bone volume0.50.91.21.11.1-0.4
Breakpoint value in progressive ratio session0.80.91.3-0.5-1.1-1.1
Number of licking bursts4.06.69.72.83.1-1.4
Context. condit. distance diff. score0.20.20.3-0.5-0.50.5
Locomotion velocity, session 12.73.08.00.80.4-2.8
Locomotion distance, session 11.01.23.00.70.4-1.7
Locomotion velocity, session 21.31.62.31.41.5-0.6
Locomotion distance, session 22.33.23.91.81.7-2.0
Locomotion velocity, session 30.40.51.50.1-0.0-1.2
Locomotion distance, session 31.41.52.51.11.0-1.6
Stereotopy head waving bouts, day 30.40.41.00.40.4-1.0
Stereotopy head waving duration, day 30.10.20.20.30.5-0.4
Locomotion velocity, session 70.20.20.3-0.6-0.50.2
Locomotion distance, session 70.10.20.40.20.3-0.6
Stereotopy head waving bouts, day 72.52.83.41.81.8-1.4
Stereotopy head waving duration, day 71.72.12.71.61.6-1.0
Locomotion velocity, session 80.91.02.20.70.6-1.5
Locomotion distance, session 80.50.71.60.60.5-1.2
Degree of sensitization distance0.50.50.6-0.7-0.60.8
Degree of sensitization stereotypy2.12.32.91.71.7-1.0
Conditioned locomotion0.20.30.80.20.0-0.9
Cocaine response after cond. corrected0.40.50.6-0.7-0.8-0.6
Cocaine response after cond. not corrected0.40.51.0-0.3-0.5-1.0
Cocaine response before conditioning1.01.21.61.21.2-0.7
Saline control response2.93.84.22.01.8-2.0
Bone: connectivity density0.30.40.60.70.80.2
Bone: cortical apparent density0.20.30.8-0.10.00.9
Bone: cortical area1.92.94.52.02.1-0.4
Bone: cortical porosity0.10.10.2-0.0-0.10.4
Bone: cortical porosity0.10.10.20.50.4-0.2
Bone: cortical thickness0.71.21.91.21.40.5
Bone: cortical thickness0.20.30.8-0.2-0.00.9
Bone: cortical tissue density0.20.20.7-0.2-0.10.8
Condit. Reinf. active minus inactive responses0.30.30.40.60.6-0.5
Condit. Reinf. active-inactive response ratio1.01.01.2-1.0-1.10.9
Condit. Reinf. active responses2.22.73.31.81.8-1.2
Condit. Reinf. inactive responses2.73.34.32.12.1-1.1
Incentive salience index mean3.84.75.42.32.3-1.9
Condit. Reinf. lever presses11.315.917.84.24.1-3.6
Condit. Reinf. active minus inactive responses0.30.40.60.80.7-0.2
Condit. Reinf. active-inactive response ratio0.10.10.20.10.10.4
Condit. Reinf. active responses1.11.52.01.41.4-0.8
Condit. Reinf. inactive responses1.41.82.51.61.6-0.6
Condit. Reinf. lever presses0.91.22.11.31.4-0.1
Condit. Reinf. lever reinforcers received1.31.82.31.51.5-0.9
Conditioned reinforcement - actives0.00.00.10.30.20.1
Conditioned reinforcement - inactives0.00.00.10.20.0-0.2
Conditioned locomotion0.00.00.10.00.2-0.2
Patch foraging indifference point 0 sec1.12.15.50.70.5-2.3
Patch foraging indifference point AUC3.95.76.62.62.5-2.0
Delay disc. indifference point, 0s delay0.10.10.2-0.3-0.5-0.1
Delay disc. indifference point, 16s delay0.70.71.2-1.0-1.1-0.3
Delay disc. indifference point, 2s delay0.10.10.20.30.50.3
Delay disc. indifference point, 24s delay0.20.20.3-0.5-0.50.4
Delay disc. indifference point, 4s delay0.10.10.2-0.4-0.30.3
Delay disc. indifference point, 8s delay0.00.00.0-0.10.10.1
Indifference point function ln k0.91.62.1-1.4-1.40.8
Indifference point function log k0.91.62.1-1.4-1.40.8
Patch foraging total patch changes 0 sec1.73.16.41.31.1-2.5
Patch foraging total patch changes 12 sec0.71.01.01.01.0-1.0
Patch foraging total patch changes 18 sec0.20.30.60.20.2-0.8
Patch foraging total patch changes 24 sec1.62.83.21.81.5-1.7
Patch foraging total patch changes 6 sec2.43.76.11.61.6-2.5
Patch foraging time to switch 0 sec2.55.15.6-2.4-2.22.2
Patch foraging water rate 0 sec1.73.54.21.81.7-2.1
Patch foraging water rate 12 sec0.20.50.60.70.7-0.8
Patch foraging water rate 18 sec0.50.81.31.11.10.2
Patch foraging water rate 24 sec0.20.30.40.50.60.6
Patch foraging water rate 6 sec2.33.34.52.12.0-1.2
Seeking ratio, delayed vs. immediate footshock1.72.02.91.71.5-1.0
Distance traveled before self-admin6.58.610.13.03.2-2.6
Distance traveled after self-admin3.74.57.12.32.7-1.0
Extensor digitorum longus weight4.517.722.64.64.8-3.0
Bone: elastic displacement7.38.49.3-3.0-3.12.6
Bone: elastic work4.86.210.0-2.2-2.03.2
Bone: endosteal estimation1.02.12.91.31.3-1.7
Bone: endosteal perimeter1.12.33.21.41.3-1.8
Epididymis fat weight0.10.40.70.70.8-0.4
Delta time in closed arm before/after self-admin0.20.20.3-0.5-0.10.6
Delta time in open arm before/after self-admin0.10.10.2-0.1-0.4-0.2
Diff in mean of infusions in LGA sessions0.81.01.2-1.0-1.01.1
Delay discount exponential model param0.20.30.40.60.6-0.1
Extinction: sum of active levers before priming1.61.82.6-1.5-1.60.8
Active lever presses in extinction session 60.00.00.0-0.2-0.20.2
Bone: final force1.52.53.41.81.8-0.9
Bone: final moment1.01.72.51.51.6-0.5
Food consumed during 24 hour testing period1.52.12.31.41.4-1.5
Glucose1.32.02.21.41.5-1.3
Heart weight0.40.60.90.70.9-0.5
Delay discount hyperbolic model param0.20.20.30.60.5-0.0
Intermittent access intake day 1-15 change0.00.10.10.30.3-0.1
Intermittent access intake escalation0.00.00.10.20.30.1
Intermittent access intake escalation 20.30.30.50.60.70.3
Intermitt. access day 1 inactive lever presses0.31.21.41.20.9-1.1
Intermitt. access day 15 inactive lever presses0.10.30.40.70.3-0.5
Intermitt. access escalation Index0.10.20.20.40.4-0.4
Intermittent access day 1 total infusions1.11.82.5-1.5-1.60.6
Intermittent access day 15 total infusions0.20.30.3-0.5-0.50.6
Intermittent access terminal intake (last 3 days)0.00.00.10.30.2-0.1
Intermittent access total infusions0.00.00.1-0.2-0.2-0.0
Intermittent access day 1 locomotion0.91.21.7-1.3-1.30.5
Intermittent access day 15 total locomotion1.32.43.5-1.9-1.70.8
Intermittent access total locomotion1.72.12.6-1.6-1.41.2
Intermittent access standard deviation0.00.10.20.10.1-0.4
Left kidney weight1.15.17.02.11.9-2.6
Right kidney weight0.41.61.71.31.2-1.3
Cocaine induced anxiety1.01.41.81.31.4-0.9
Post-drug Anxiety4.04.35.02.22.2-1.8
Baseline Anxiety0.30.30.50.60.7-0.3
Tail length1.45.46.52.52.5-1.9
Length with tail1.77.58.82.72.5-3.0
Length without tail0.41.22.40.70.7-1.5
Times rat made contact with spout0.30.40.60.60.8-0.0
Lifetime Intake0.10.10.2-0.1-0.1-0.4
Liver weight, left0.20.40.50.50.6-0.7
Liver weight, right0.71.21.4-1.2-1.11.0
Locomotor activity0.10.10.1-0.4-0.40.2
Locomotor testing distance0.10.10.2-0.2-0.3-0.5
Locomotor testing rearing0.40.80.90.90.8-1.0
Locomotion in novel chamber0.20.30.40.60.70.1
Locomotion in novel chamber post-restriction0.91.42.91.21.7-0.0
Fecal boli incidents, locomotor time 12.33.34.4-1.9-2.11.3
Change in fecal boli incidents, locomotor task1.61.61.81.41.1-1.3
Time >=10cm from walls, locomotor time 10.10.10.30.30.1-0.5
Bouts of movement, locomotor time 11.11.21.4-1.2-1.21.0
Total resting periods, locomotor time 12.52.82.9-1.7-1.71.6
Rest time, locomotor task time 12.63.25.4-1.7-1.32.3
Distance moved, locomotor task time 12.03.04.71.61.3-2.2
Vertical activity count, locomotor time 11.33.25.21.71.2-2.3
Time >=10cm from walls, locomotor time 20.20.20.30.60.2-0.5
Bouts of movement, locomotor time 20.40.60.91.00.7-0.5
Total resting periods, locomotor time 20.10.10.30.60.3-0.2
Rest time, locomotor task time 21.11.31.5-1.2-1.01.2
Distance moved, locomotor task time 20.10.10.20.30.4-0.0
Vertical activity count, locomotor time 20.60.91.11.10.7-1.0
Light reinforcement 11.53.67.51.41.3-2.7
Light reinforcement 21.72.65.81.10.9-2.4
Bone: marrow area0.92.02.41.31.3-1.5
Bone: maximum diameter2.03.85.32.22.3-1.1
Bone: maximum force3.05.47.52.62.7-1.4
Bone: maximum moment2.23.95.72.22.4-1.0
Mean time between licks in bursts0.20.40.6-0.7-0.70.4
Mean num. licks in bursts2.64.05.3-2.2-2.31.4
Cd content in liver1.21.31.91.31.4-0.7
Co content in liver0.30.40.6-0.6-0.8-0.3
Cu content in liver1.11.31.5-1.2-1.21.0
Fe content in liver0.30.40.6-0.6-0.8-0.4
K content in liver0.10.10.2-0.4-0.5-0.2
Mg content in liver0.90.91.3-1.1-1.10.6
Mn content in liver1.61.83.01.51.7-0.3
Na content in liver1.11.21.2-1.1-1.11.1
Rb content in liver4.45.17.0-2.6-2.61.3
Se content in liver2.22.64.01.92.0-0.6
Sr content in liver0.50.40.70.80.8-0.2
Zn content in liver0.00.00.1-0.1-0.00.3
Bone: minimum diameter0.10.30.4-0.5-0.40.6
Time in familiar zone, hab. session 12.01.95.1-0.8-0.32.3
Time in novel zone, hab. session 11.21.21.6-0.8-1.3-1.1
Total zone transitions, hab. session 10.00.00.1-0.2-0.20.1
Total locomotion distance, hab. session 10.30.40.60.50.80.7
Locomotion velocity, hab. session 10.91.32.31.31.50.0
Time in familiar zone, hab. session 22.12.23.9-1.3-1.02.0
Time in novel zone, hab. session 20.50.51.0-0.4-0.7-1.0
Total zone transitions, hab. session 21.31.72.71.21.0-1.6
Total locomotion distance, hab. session 21.01.41.71.31.3-0.8
Locomotion velocity, hab. session 21.11.41.91.31.4-0.8
Novel to familiar place preference ratio2.52.74.6-1.9-2.20.3
Novelty place preference3.53.75.9-2.2-2.40.7
Time in novel zone, NPP test4.14.47.0-2.4-2.60.7
Total zone transitions, NPP test1.21.72.61.21.0-1.6
Total locomotion distance, NPP test2.23.03.11.71.7-1.8
Locomotion velocity, NPP test2.33.23.41.81.8-1.7
Intraocular pressure1.62.32.61.61.5-1.4
Delta distance traveled before/after self-admin0.00.00.10.10.10.3
Delta ambulatory time before/after self-admin0.10.10.2-0.1-0.10.4
Parametrial fat weight0.10.20.4-0.2-0.5-0.6
Pavlov. Cond. lever latency8.110.211.6-3.3-3.42.8
Pavlov. Cond. magazine entry latency0.40.50.60.70.8-0.7
Pavlov. Cond. change in total contacts2.93.13.41.81.7-1.8
Pavlov. Cond. index score3.44.35.22.22.3-1.7
Pavlov. Cond. latency score3.14.04.72.12.2-1.7
Pavlov. Cond. lever contacts7.69.110.63.23.3-2.5
Pavlov. Cond. magazine entry number0.50.60.7-0.9-0.90.5
Pavlov. Cond. intertrial magazine entries0.10.10.10.30.4-0.2
Pavlov. Cond. lever-magazine prob. diff.2.93.64.62.12.1-1.4
Pavlov. Cond. response bias4.25.26.02.42.5-1.9
Pavlov. Cond. lever latency0.81.11.9-1.2-1.40.1
Pavlov. Cond. magazine entry latency0.40.50.8-0.7-0.60.9
Pavlov. Cond. change in total contacts0.30.51.30.10.41.1
Pavlov. Cond. index score0.20.30.8-0.10.10.9
Pavlov. Cond. latency score0.20.30.80.00.20.9
Pavlov. Cond. lever contacts0.50.71.31.01.10.1
Pavlov. Cond. magazine entry number0.40.51.40.30.0-1.2
Pavlov. Cond. intertrial magazine entries0.40.50.80.90.6-0.7
Pavlov. Cond. lever-magazine prob. diff.0.30.31.0-0.20.01.0
Pavlov. Cond. response bias0.20.30.40.40.60.6
Time in closed arm before self-admin0.40.60.6-0.8-0.80.7
Time in closed arm after self-admin0.60.60.8-0.9-0.50.9
Time in open arm before self-admin1.71.92.51.31.2-1.6
Time in open arm after self-admin1.41.51.81.31.0-1.3
Bone: periosteal estimation1.43.03.81.91.9-1.3
Bone: periosteal perimeter0.71.21.61.11.0-1.3
Bone: post-yield work2.73.94.21.92.1-2.0
Progressive ratio test 1 active lever presses0.10.10.1-0.1-0.4-0.3
Progressive ratio test 1 breakpoint0.10.10.2-0.0-0.3-0.4
Progressive ratio test 1 inactive lever presses1.01.42.41.10.7-1.6
Progressive ratio test 2 active lever presses0.30.40.7-0.6-0.8-0.2
Progressive ratio test 2 breakpoint0.40.40.8-0.6-0.9-0.2
Progressive ratio test 2 inactive lever presses0.00.10.20.2-0.0-0.4
Incentive Sensitization - Responses0.10.10.2-0.3-0.4-0.2
Incentive Sensitization - Breakpoint0.20.20.4-0.5-0.6-0.1
Sum of active levers in priming session hrs 5-62.82.64.3-1.8-2.10.2
Progressive ratio0.00.10.1-0.2-0.4-0.2
Food seeking constrained by brief footshock11.514.115.84.03.8-3.5
Seeking ratio, punishment vs. effort3.24.65.72.42.4-1.6
Retroperitoneal fat weight0.52.22.4-1.6-1.41.4
Reaction time number correct0.00.10.2-0.1-0.3-0.4
Reaction time mean minus median0.61.64.4-0.6-0.12.1
Reaction time mean minus median AUC0.30.71.80.10.61.4
Reaction time num false alarms0.20.20.6-0.20.10.8
Reaction time num false alarms AUC0.10.20.40.40.60.0
Reaction time trials correct on left0.00.10.2-0.1-0.3-0.4
Reaction time trials on left0.10.10.2-0.2-0.4-0.3
Reaction time mean3.04.77.5-2.0-1.62.7
Reaction time mean AUC3.25.28.4-2.1-1.62.9
Median of all reaction times3.65.15.9-2.3-2.02.4
Reaction time omissions2.73.94.9-2.2-2.21.5
Reaction time false alarm rate0.10.20.4-0.10.20.7
Reaction time premature initiation rate4.36.06.8-2.6-2.42.3
Reaction time premature initiations2.64.75.7-2.4-2.31.8
Std. dev. reaction times1.63.06.6-1.3-0.82.6
Reaction time trials completed0.10.10.2-0.2-0.4-0.3
Reaction time trials AUC0.10.10.2-0.2-0.4-0.3
Run reversals in cocaine runway, females0.30.30.8-0.5-0.20.9
Run reversals in cocaine runway, males0.10.10.1-0.4-0.30.3
Latency to leave start box in cocaine runway0.91.11.51.11.2-0.7
Latency to leave start box in cocaine runway, F0.10.10.2-0.3-0.3-0.4
Latency to leave start box in cocaine runway, M5.14.76.12.52.5-1.4
Std. dev. time between licks in bursts0.71.01.2-1.1-1.00.9
Total sessions with >9 infusions0.10.20.40.10.1-0.7
Short access day 1 total inactive lever presses1.62.23.61.31.1-1.9
Short access day 10 total inactive lever presses0.41.11.31.11.1-0.9
Short access day 1 total infusions0.50.61.50.40.4-1.2
Short access day 10 total infusions0.20.20.3-0.3-0.6-0.5
Short access total infusions0.20.20.5-0.1-0.3-0.7
Short access day 1 locomotion1.41.72.7-1.6-1.50.5
Short access day 10 total locomotion1.42.73.1-1.8-1.41.7
Short access total locomotion0.91.01.6-1.3-1.00.6
One hour access (0.3 mA shock)0.20.20.3-0.4-0.6-0.3
Compulsive drug intake0.10.10.2-0.1-0.20.5
One hour access (shock baseline)0.20.30.8-0.2-0.3-0.9
Social response proportion0.80.91.1-0.9-1.01.0
Social responses0.50.70.80.90.8-0.7
Social time0.10.10.1-0.3-0.4-0.2
Soleus weight0.41.23.30.30.0-1.8
Bone: stiffness4.26.89.12.93.0-1.6
Tibialis anterior weight7.324.629.05.35.4-4.1
Time to tail flick, vehicle, before self-admin1.92.02.5-1.6-1.51.1
Time to tail flick, vehicle, after self-admin0.00.00.1-0.1-0.00.3
Time to tail flick, test, before self-admin0.40.40.60.80.7-0.4
Time to tail flick, test, after self-admin0.20.30.40.40.40.7
Delta time to tail flick, vehicle, before/after SA0.60.60.80.90.8-0.6
Delta time to tail flick, test, before/after SA0.80.81.1-0.9-0.71.0
Tibia length0.71.93.21.21.0-1.8
Ambulatory time before self-admin4.66.87.62.72.8-2.4
Ambulatory time after self-admin3.44.05.12.12.3-1.5
Bone: tissue strength0.10.10.10.30.3-0.1
Total heroin consumption0.70.81.5-1.0-1.20.1
Bone: trabecular number0.61.01.61.21.3-0.2
Bone: trabecular spacing0.10.10.10.30.30.3
Bone: trabecular thickness0.10.20.3-0.4-0.30.5
Bone: trabecular tissue density3.85.67.62.62.8-1.6
Water consumed over 24 hours1.62.22.81.61.7-1.1
Number of responses in last shaping day1.41.53.90.70.3-2.0